Citrus Sinensis ID: 019340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHcHHccccHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkqrtwpdrstgsrftalqfpitekdnrrpelTASARKARIKRrsrfscsrsiksteghdfaslpfDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWgkrfkhgrgvRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAvlgdpagqfnlgisylqaqpaNAEEAVKLLYQASIAGHVRAQYQLALCLhrgrgvdfNLQEAARWYLRAAEGGYVRAMYNTSLcysfgeglplsHRQARKWMKRaadcghgkaqlehglglfteGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH
Flexible Loop (DISEMBL)
mkqrtwpdrstgsrftalqfpitekdnrrpeltasarkarikrrsrfscsrsiksteghdfaslPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRwgkrfkhgrgvrkNLDKALDSFLkgaargstLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILqqlsatsrdrAMLVVDSwrampslh
Low Complexity Region (SEG)
MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTasarkarikrrsrFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH
Disordered region (IsUnstruct)
**********************************************************HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW*******
Disordered Region (DISOPRED)
****TW***STGSRF*ALQF*****DNRRPELTASARKARIKRRSRFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL*
Disordered Region (DISEMBL)
************SRFTALQFPITEKDNRR**************************TEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH
Disordered Region (DISPRO)
************************************************************FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q94C27	351	F-box protein At1g70590 O	yes	no	0.991	0.965	0.620	1e-116
Q9ESM7	794	Protein sel-1 homolog 1 O	N/A	no	0.611	0.263	0.316	1e-16
Q9UBV2	794	Protein sel-1 homolog 1 O	yes	no	0.599	0.258	0.300	5e-16
Q80Z70	794	Protein sel-1 homolog 1 O	yes	no	0.611	0.263	0.311	1e-15
Q9Z2G6	790	Protein sel-1 homolog 1 O	yes	no	0.611	0.264	0.311	1e-15
Q3V172	688	Protein sel-1 homolog 2 O	no	no	0.596	0.296	0.274	7e-12
Q9ZG88	974	Localization factor PodJL	yes	no	0.403	0.141	0.353	2e-11
B8GXA0	974	Localization factor PodJL	yes	no	0.403	0.141	0.353	2e-11
Q5TEA6	688	Protein sel-1 homolog 2 O	no	no	0.622	0.309	0.268	3e-11
P77234	325	Uncharacterized protein Y	N/A	no	0.476	0.501	0.312	5e-11

>sp|Q94C27|FB84_ARATH F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 262/348 (75%), Gaps = 9/348 (2%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
           MKQRTWP RS GSRF++L F      ++R  ++    A+A+     R S  S S    S 
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60

Query: 57  EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
           E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61  EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120

Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
            VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NL
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180

Query: 176 GISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235
           GI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240

Query: 236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 295
           GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300

Query: 296 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 339
           +YLELA R GE AA  VK V+ QQLSAT    +   A+   ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 9/218 (4%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
           GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 169 PAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 226
           P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506

Query: 227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 286
            +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566

Query: 287 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
            +G+   AVV YL LA +  E A  +    IL Q  AT
Sbjct: 567 KDGDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Mesocricetus auratus (taxid: 10036)

>sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3

 Score = 85.5 bits (210), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
           GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 169 PAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 226
           P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506

Query: 227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 286
            +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566

Query: 287 TEGEMMKAVV-YLELATRAGETAADHVKNVILQ 318
            +G+   AV+ YL LA +  E A  +   ++ Q
Sbjct: 567 KDGDYNAAVIQYLLLAEQGYEVAQSNAAFILDQ 599

May play a role in Notch signaling (By similarity). May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Homo sapiens (taxid: 9606)

>sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
           GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+
Sbjct: 387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 446

Query: 169 PAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 226
           P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A
Sbjct: 447 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506

Query: 227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 286
            +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      +
Sbjct: 507 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 566

Query: 287 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
            + +   AVV YL LA +  E A  +    IL Q  AT
Sbjct: 567 KDDDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 603

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 9/218 (4%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGD 168
           GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+
Sbjct: 383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGN 442

Query: 169 PAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA 226
           P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV  + ++A
Sbjct: 443 PVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 502

Query: 227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLF 286
            +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L      +
Sbjct: 503 LKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSY 562

Query: 287 TEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
            + +   AVV YL LA +  E A  +    IL Q  AT
Sbjct: 563 KDEDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 599

May play a role in Notch signaling. May be involved in the endoplasmic reticulum quality control (ERQC) system also called ER-associated degradation (ERAD) involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins.

Mus musculus (taxid: 10090)

>sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDP 169
           +G+ ++  KAL  FLK A  GS  AM   G MY+E +         A   +  AA  G+ 
Sbjct: 312 KGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNA 371

Query: 170 AGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 227
            G   LG+ Y   +  P N  EA+K   +A+  G   AQ+QL    + G GV  + + A 
Sbjct: 372 IGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAF 431

Query: 228 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 287
           +++  A++ G   A+Y  +  Y+ G G+  S R A +  K   + GH   +       + 
Sbjct: 432 KYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491

Query: 288 EGEMMKAVVYLELATRAGETAADHVKNVILQ 318
           +G++  +++   L    G   A      IL+
Sbjct: 492 DGDIDSSLIQYALLAEMGYEVAQSNSAFILE 522

Mus musculus (taxid: 10090)

>sp|Q9ZG88|PODJ_CAUCR Localization factor PodJL OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=podJ PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 12/150 (8%)

Query: 191 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 249
           V+LL +A+  G+  AQ+ L+     G+ GV  ++ EA RW  RAA GG  RAM+N +L Y
Sbjct: 745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYY 804

Query: 250 SFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATR 303
             GEG P +   A  W ++AAD G   +Q       E GLG+       +A  +  +A R
Sbjct: 805 FKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGVSQ--NPAEAYKWYVIAGR 862

Query: 304 AGETAADHVKNVILQQLSATSR---DRAML 330
           AG++ A      +  QL+A ++   DR+ L
Sbjct: 863 AGDSTARGRATALRSQLTAEAQQTADRSAL 892

PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8GXA0|PODJ_CAUCN Localization factor PodJL OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=podJ PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 12/150 (8%)

Query: 191 VKLLYQASIAGHVRAQYQLALCLHRGR-GVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 249
           V+LL +A+  G+  AQ+ L+     G+ GV  ++ EA RW  RAA GG  RAM+N +L Y
Sbjct: 745 VELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAEARRWSERAANGGDPRAMHNLALYY 804

Query: 250 SFGEGLPLSHRQARKWMKRAADCGHGKAQL------EHGLGLFTEGEMMKAVVYLELATR 303
             GEG P +   A  W ++AAD G   +Q       E GLG+       +A  +  +A R
Sbjct: 805 FKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLYESGLGVSQ--NPAEAYKWYVIAGR 862

Query: 304 AGETAADHVKNVILQQLSATSR---DRAML 330
           AG++ A      +  QL+A ++   DR+ L
Sbjct: 863 AGDSTARGRATALRSQLTAEAQQTADRSAL 892

PodJL provides the positional information for the localization of several polar organelles (pili, adhesive holdfast and chemotactic apparatus) by recruiting structural (CpaE) and regulatory (PleC) proteins to a specific cell pole.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

>sp|Q5TEA6|SE1L2_HUMAN Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 115 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDP 169
           +G+ ++  KAL  FLK A  GS  AM   G MY E +         A   +  AA  G+ 
Sbjct: 312 KGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNA 371

Query: 170 AGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 227
            G   LG+ Y   +  P N  EA+K   +A+  G   AQ+QL    + G G+  + + A 
Sbjct: 372 IGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAF 431

Query: 228 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT 287
           +++  A++ G   A+Y  +  Y+ G G+  S R A +  K   + GH   +       + 
Sbjct: 432 KYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYK 491

Query: 288 EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDR 327
           +G++  ++V   L    G   A      IL+   A   ++
Sbjct: 492 DGDIDSSLVQYALLAEMGYEVAQSNSAFILESKKANILEK 531

Homo sapiens (taxid: 9606)

>sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEA-----AISLYRQ 162
           G+++   +   K+ ++A+    K A +G T A    G   W +D+ EA     A+  Y+ 
Sbjct: 69  GQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASNALG---WTLDRGEAPNYKEAVVWYQI 125

Query: 163 AAVLGDPAGQFNLGISYLQAQPANAEEAVKLLY--QASIAGHVRAQYQLALCLHRGRGVD 220
           AA  G    Q NLG  Y        + A+   +  QA++ GH  AQ  LA     G+GV 
Sbjct: 126 AAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVA 185

Query: 221 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 273
            N   AA WYL++A+ G   A +  +  Y+ GEG+   ++QA  W  +AA  G
Sbjct: 186 QNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQG 238

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
225470583	335	PREDICTED: F-box protein At1g70590 [Viti	0.967	0.988	0.708	1e-135
255574005	329	conserved hypothetical protein [Ricinus	0.959	0.996	0.705	1e-133
224110896	334	predicted protein [Populus trichocarpa]	0.967	0.991	0.706	1e-132
224102439	317	predicted protein [Populus trichocarpa]	0.923	0.996	0.660	1e-123
449450432	368	PREDICTED: F-box protein At1g70590-like	1.0	0.929	0.616	1e-120
297838865	345	F-box family protein [Arabidopsis lyrata	0.994	0.985	0.655	1e-119
356497357	327	PREDICTED: F-box protein At1g70590-like	0.947	0.990	0.637	1e-114
18409624	351	F-box protein [Arabidopsis thaliana] gi|	0.991	0.965	0.620	1e-114
356501969	327	PREDICTED: F-box protein At1g70590-like	0.821	0.859	0.703	1e-110
147779938	943	hypothetical protein VITISV_023688 [Viti	0.713	0.258	0.675	1e-103

>gi|225470583|ref|XP_002273705.1| PREDICTED: F-box protein At1g70590 [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/346 (70%), Positives = 278/346 (80%), Gaps = 15/346 (4%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSI---KSTE 57
           MKQRTWP +S GSRFTAL+             + S +K   + RS+   S +I    S E
Sbjct: 1   MKQRTWPVKSEGSRFTALRL-----------YSGSGKKEETRLRSKRYSSITIPFRSSRE 49

Query: 58  GHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG- 116
             DF+ LP D+L KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G 
Sbjct: 50  ETDFSKLPDDILQKIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGG 109

Query: 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLG 176
           VR N+ KALDSFLKGAARGSTLAMVDAGL+YWEM KKE +I+LYR+AA LGDP  Q NLG
Sbjct: 110 VRPNIQKALDSFLKGAARGSTLAMVDAGLIYWEMGKKEESIALYRKAAELGDPTAQCNLG 169

Query: 177 ISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG 236
           ISYL ++P   EEA K LY +S AG+VRAQYQLALCLHRGRG+D NL EAARWYL+AAEG
Sbjct: 170 ISYLHSEPPKREEAAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAARWYLKAAEG 229

Query: 237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVV 296
           GYVRAMYN SLCYS+GEGL  SHRQAR+WMKRAAD GH KAQ EHGLGLF+EGEMMKAVV
Sbjct: 230 GYVRAMYNVSLCYSYGEGLVHSHRQARRWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVV 289

Query: 297 YLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 342
           YLELATRAGETAA HVKNVILQQLS TSRDRAML+ D+WRA+P+ H
Sbjct: 290 YLELATRAGETAAAHVKNVILQQLSVTSRDRAMLLADNWRALPTSH 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574005|ref|XP_002527920.1| conserved hypothetical protein [Ricinus communis] gi|223532695|gb|EEF34477.1| conserved hypothetical protein [Ricinus communis]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/343 (70%), Positives = 271/343 (79%), Gaps = 15/343 (4%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
           MKQRTWP RS GS+F +L  P T            +++  I  +S  S S      +G D
Sbjct: 1   MKQRTWPSRSDGSKFKSLPLPYT-----------ISKREIIPSKSVISFS---VPKDGRD 46

Query: 61  FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
           F++LPFD+L KIAASFTLP L+ ASLVC+SW D LRPLREAMV L+WGKRFKHGRG VR 
Sbjct: 47  FSTLPFDILIKIAASFTLPNLQTASLVCRSWRDGLRPLREAMVFLKWGKRFKHGRGGVRP 106

Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
           NL KALDSFLKG A GS LAMVDAGL+YWEM  K+ AI+LY +AA LGDPAGQ NLGI Y
Sbjct: 107 NLQKALDSFLKGVALGSPLAMVDAGLVYWEMGFKDKAIALYLKAAELGDPAGQCNLGIYY 166

Query: 180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 239
           +Q +P   +EA+K L QAS AGHVRAQYQLALCLH+GRGVD NLQEAA+WYL+AA GGYV
Sbjct: 167 VQVEPPKPKEAIKWLLQASNAGHVRAQYQLALCLHQGRGVDHNLQEAAKWYLKAAAGGYV 226

Query: 240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 299
           RAMYN +LCYS GEGL  S+RQARKWMKRAAD GH KAQ EHGLGLF+EGEMMKAVVYLE
Sbjct: 227 RAMYNVALCYSVGEGLAQSYRQARKWMKRAADRGHSKAQFEHGLGLFSEGEMMKAVVYLE 286

Query: 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH 342
           LATRAGETAA HVKNVILQQLS TSRDR ML+ DSWRA+PS H
Sbjct: 287 LATRAGETAAAHVKNVILQQLSTTSRDRVMLLADSWRALPSSH 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110896|ref|XP_002315673.1| predicted protein [Populus trichocarpa] gi|222864713|gb|EEF01844.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/341 (70%), Positives = 278/341 (81%), Gaps = 10/341 (2%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
           MKQ TWP RS GSRF +L  PI      + +   S  K+  K  S    SR I+S++G D
Sbjct: 1   MKQSTWPGRSDGSRFKSL--PI------KHQFHQSEFKSTSKFWSASLASRQIRSSDG-D 51

Query: 61  FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRK 119
           F+ LPFD+L KIAASFTLP L+AASLVCKSW++ LRPLREAM+ L+WGKRFKHGRG VR 
Sbjct: 52  FSKLPFDILTKIAASFTLPNLQAASLVCKSWSEGLRPLREAMLFLKWGKRFKHGRGGVRP 111

Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
           NL KAL+SFLKGAARGSTLAMVDAGL+YWE+  K+ AI+LY +AA LGD +GQ NLG++Y
Sbjct: 112 NLSKALESFLKGAARGSTLAMVDAGLLYWEIGDKDKAIALYEKAAKLGDRSGQCNLGLAY 171

Query: 180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 239
           LQA+P+  +EAVK L+QAS +GHVRAQYQ ALCLH+G GV+ NLQEAARWYL+AAEGGYV
Sbjct: 172 LQAEPSKRKEAVKWLFQASKSGHVRAQYQFALCLHQGSGVNCNLQEAARWYLKAAEGGYV 231

Query: 240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 299
           RAMYN +LCYS GEGL  SHR ARKWMKRAAD GH KAQ EHGLGLF+EGE +KAVVYLE
Sbjct: 232 RAMYNVALCYSVGEGLAQSHRLARKWMKRAADRGHSKAQFEHGLGLFSEGEQLKAVVYLE 291

Query: 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340
           LATRAGETAA HVKNVILQQLSATSRDR M + D+WRA+PS
Sbjct: 292 LATRAGETAAAHVKNVILQQLSATSRDRVMNLADNWRALPS 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102439|ref|XP_002312677.1| predicted protein [Populus trichocarpa] gi|222852497|gb|EEE90044.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/342 (66%), Positives = 269/342 (78%), Gaps = 26/342 (7%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
           MKQ+TWP R    R +  +F ++ + +                       R ++S++G D
Sbjct: 1   MKQKTWPGRQY--RQSTFKFWLSSEAD----------------------FRQLRSSDG-D 35

Query: 61  FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
           F++LP D+L KIAASFTLP L+ ASLVCKSW++ LRPLREA++ L+WGKRFKHGR GVR 
Sbjct: 36  FSTLPSDILTKIAASFTLPHLQTASLVCKSWSEGLRPLREALLFLKWGKRFKHGRGGVRP 95

Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
           NLDKALDSFLKGA RGSTLAMVDAGL+YWE+ KK+ AI+LY++AAVLGDP+GQ NLG+SY
Sbjct: 96  NLDKALDSFLKGAVRGSTLAMVDAGLLYWEIGKKDKAIALYKKAAVLGDPSGQCNLGLSY 155

Query: 180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV 239
           LQA+P+  +EAVK L+QAS +GHVRAQYQLALCLH+G G D +L EAARWYL+AAEGGYV
Sbjct: 156 LQAEPSKRKEAVKWLFQASKSGHVRAQYQLALCLHQGCGFDRHLHEAARWYLKAAEGGYV 215

Query: 240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLE 299
           RAMY  +LCYS GEGL  SHRQARKWMKRAAD GH  AQ EHGLGLF+EGE +KAVVYLE
Sbjct: 216 RAMYRVALCYSVGEGLAQSHRQARKWMKRAADRGHSNAQYEHGLGLFSEGEKLKAVVYLE 275

Query: 300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL 341
           LAT AGETAA HVKNVILQQL ATSRD  M + ++WRA+PSL
Sbjct: 276 LATHAGETAAVHVKNVILQQLPATSRDHVMNLANNWRALPSL 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450432|ref|XP_004142966.1| PREDICTED: F-box protein At1g70590-like isoform 1 [Cucumis sativus] gi|449500305|ref|XP_004161061.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At1g70590-like [Cucumis sativus]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 265/368 (72%), Gaps = 26/368 (7%)

Query: 1   MKQRTWPDRSTGSRFTALQFP------ITEKDNRRPELTA---SARKARIKRRSRFSCSR 51
           M QRTWPDRS  S F++              D+    L A   S       + + F+ + 
Sbjct: 1   MWQRTWPDRSDASPFSSFSLSKLKAKSAIHMDDHHHNLDAYHTSRHTLSTSKSTNFTPTV 60

Query: 52  SI----------------KSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDAL 95
                              S   HDF++LP+DVL KIAASF LP LRAAS VCK+W DA 
Sbjct: 61  HPSPSTSSSSQTPFWVRPSSLPSHDFSALPYDVLIKIAASFNLPNLRAASFVCKAWFDAF 120

Query: 96  RPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKE 154
           RPLREAM+ LRWGKRFKHGRG VR N DKAL+SFLKGAARGSTLAMVDAGL+YWEM  K 
Sbjct: 121 RPLREAMLFLRWGKRFKHGRGGVRPNSDKALNSFLKGAARGSTLAMVDAGLLYWEMGNKN 180

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH 214
            AI+LY++AA LGDP+ + NLGIS+L A+P N  EAVK L QAS+ G++RAQYQLALCL 
Sbjct: 181 DAIALYQKAADLGDPSAKCNLGISFLHAKPPNPTEAVKWLRQASVVGNIRAQYQLALCLQ 240

Query: 215 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274
           +G GVD N+QEAARW+++AAEGGYVRAMYN SLCYS GEGL  +H+QA+KWMKRAAD GH
Sbjct: 241 QGHGVDRNVQEAARWFIKAAEGGYVRAMYNLSLCYSCGEGLVHNHQQAKKWMKRAADRGH 300

Query: 275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDS 334
            KAQ EHGL LF+E +MMKAVVYLELATR+GE AA HVKNVILQQLS +SRDR M V D+
Sbjct: 301 CKAQFEHGLHLFSERDMMKAVVYLELATRSGERAAGHVKNVILQQLSQSSRDRVMSVADN 360

Query: 335 WRAMPSLH 342
           WR +PS H
Sbjct: 361 WRPLPSSH 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838865|ref|XP_002887314.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297333155|gb|EFH63573.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/343 (65%), Positives = 266/343 (77%), Gaps = 3/343 (0%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASAR-KARIKRRSRFSCSRSIKSTE-G 58
           MKQRTWP RS GSRFT+L F   ++  +R   ++  R  A+    SR S S S  S E G
Sbjct: 1   MKQRTWPCRSEGSRFTSLSFLKPQEKEKRTRFSSINRATAKSSTSSRSSSSSSPLSNEIG 60

Query: 59  HDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-V 117
            DF+ LPFD+L KIAA F+ P L+AAS VCKSW DAL+PLRE+M+LLRWGK+FKHGRG V
Sbjct: 61  GDFSMLPFDILMKIAAPFSHPNLQAASSVCKSWRDALKPLRESMLLLRWGKKFKHGRGGV 120

Query: 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGI 177
           R NLDKALDSFLKGAARGSTLAMVDAGL+YWE  +KE A+SLYR+AA LGD  GQ NLGI
Sbjct: 121 RANLDKALDSFLKGAARGSTLAMVDAGLVYWETGEKEKAMSLYRRAAELGDAVGQCNLGI 180

Query: 178 SYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237
            YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH+GR V  NL EA++WYL+AAEGG
Sbjct: 181 CYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHQGRVVKTNLLEASKWYLKAAEGG 240

Query: 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVY 297
           YVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EG M+K+V+Y
Sbjct: 241 YVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGAMLKSVLY 300

Query: 298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340
           LELA R GE+AA H+K VI QQLSATSR   +    +WR +P+
Sbjct: 301 LELAERGGESAATHIKEVIHQQLSATSRGHVINQASNWRPLPA 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497357|ref|XP_003517527.1| PREDICTED: F-box protein At1g70590-like [Glycine max]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/342 (63%), Positives = 259/342 (75%), Gaps = 18/342 (5%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHD 60
           MK RTWP       F++L +      + R E +A AR  R+  R        +    G +
Sbjct: 1   MKHRTWP-----RAFSSLPY------SNRSEFSA-ARSTRLCARPPPPSPPGV----GGE 44

Query: 61  FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRK 119
           F+SLP+DVL KIAASF  P LRAASLVC++W +ALRPLREAMVLLRWGKRFKHGR GVR 
Sbjct: 45  FSSLPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMVLLRWGKRFKHGRRGVRP 104

Query: 120 NLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY 179
           N+DKALDSF K A RGS LAMVDAGL+YWE  +K  A+ LY +AA LG+P+ Q NLG+SY
Sbjct: 105 NVDKALDSFTKAAVRGSALAMVDAGLIYWERGEKPKAMELYLKAAELGNPSAQCNLGLSY 164

Query: 180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGGY 238
           LQA+P N E+AVK L +AS+ G+VRAQYQLALCLHR  G V  NL+EAA+WY++AAEGGY
Sbjct: 165 LQAEPPNTEKAVKWLRKASVCGNVRAQYQLALCLHRSGGRVRSNLKEAAKWYMKAAEGGY 224

Query: 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYL 298
           VRAMYN SLC+SFGEGL  +H+ ARKWMKRAAD GH KAQ EHGL LF+EG+MMKAVVYL
Sbjct: 225 VRAMYNISLCFSFGEGLASNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVYL 284

Query: 299 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340
           ELATRAGE  A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 285 ELATRAGEKGAAHVKNAVLHRLSSVSRDHAMHLANSWRALPS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409624|ref|NP_564992.1| F-box protein [Arabidopsis thaliana] gi|75165183|sp|Q94C27.1|FB84_ARATH RecName: Full=F-box protein At1g70590 gi|14335050|gb|AAK59789.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|27363348|gb|AAO11593.1| At1g70590/F5A18_23 [Arabidopsis thaliana] gi|332196965|gb|AEE35086.1| F-box protein [Arabidopsis thaliana]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/348 (62%), Positives = 262/348 (75%), Gaps = 9/348 (2%)

Query: 1   MKQRTWPDRSTGSRFTALQFPITEKDNRRPELT----ASARKARIKRRSRFSCSRSIKST 56
           MKQRTWP RS GSRF++L F      ++R  ++    A+A+     R S  S S    S 
Sbjct: 1   MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60

Query: 57  EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
           E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct: 61  EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120

Query: 117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
            VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NL
Sbjct: 121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180

Query: 176 GISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235
           GI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAE
Sbjct: 181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240

Query: 236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 295
           GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct: 241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300

Query: 296 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 339
           +YLELA R GE AA  VK V+ QQLSAT    +   A+   ++WR +P
Sbjct: 301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501969|ref|XP_003519795.1| PREDICTED: F-box protein At1g70590-like [Glycine max]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/283 (70%), Positives = 234/283 (82%), Gaps = 2/283 (0%)

Query: 60  DFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHG-RGVR 118
           DF++LP+DVL KIAASF  P LRAASLVC++W +ALRPLREAM LL WGKRFKHG RGV 
Sbjct: 44  DFSALPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMALLLWGKRFKHGHRGVG 103

Query: 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS 178
            N D+ALDSF+K AARGS LAMVDAGL+YWE  +K  A+  Y +AA LG+P+ Q NLG+S
Sbjct: 104 PNPDRALDSFIKAAARGSALAMVDAGLIYWERGEKPKAMEFYHKAAELGNPSAQCNLGLS 163

Query: 179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG-VDFNLQEAARWYLRAAEGG 237
           YLQA+P N E AVK L++AS+ G+VRAQYQLALCLHRG G V  NL+EAA+WY++AAEGG
Sbjct: 164 YLQAEPPNTELAVKWLHKASVCGNVRAQYQLALCLHRGGGRVRSNLKEAAKWYMKAAEGG 223

Query: 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVY 297
           YVRAMYN SLC+SFGEGL  +H+ ARKWMKRAAD GH KAQ EHGL LF+EG+MMKAVVY
Sbjct: 224 YVRAMYNISLCFSFGEGLTRNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVY 283

Query: 298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS 340
           LELATRAGE  A HVKN +L +LS+ SRD AM + +SWRA+PS
Sbjct: 284 LELATRAGEKGAAHVKNAVLHRLSSASRDHAMHLANSWRALPS 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779938|emb|CAN62303.1| hypothetical protein VITISV_023688 [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/287 (67%), Positives = 215/287 (74%), Gaps = 43/287 (14%)

Query: 71  KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFL 129
           KIAA+FTLP L+ ASLVC+SW D+LRPLREAM+LL+WGKRFKHG G VR N+ KALDSFL
Sbjct: 46  KIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVRPNIQKALDSFL 105

Query: 130 KGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEE 189
           KGAARGSTLAMVDAGL+YWEM KKE +++LYR+AA LGDP  Q NLGISYL ++P   EE
Sbjct: 106 KGAARGSTLAMVDAGLIYWEMGKKEESVALYRKAAELGDPTAQCNLGISYLHSEPPKREE 165

Query: 190 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA----------------------- 226
           A K LY +S AG+VRAQYQLALCLHRGRG+D NL EA                       
Sbjct: 166 AAKWLYLSSNAGYVRAQYQLALCLHRGRGMDRNLPEAPTIVKGFREWEYEMWGDNHCTKP 225

Query: 227 -------------------ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMK 267
                              ARWYL+AAEGGYVRAMYN SLCYS+GEGL  SHRQAR+WMK
Sbjct: 226 CSPFVDAIHLVLYLSSPRQARWYLKAAEGGYVRAMYNVSLCYSYGEGLVHSHRQARRWMK 285

Query: 268 RAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN 314
           RAAD GH KAQ EHGLGLF+EGEMMKAVVYLELATRAGETAA HVKN
Sbjct: 286 RAADRGHSKAQFEHGLGLFSEGEMMKAVVYLELATRAGETAAAHVKN 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2026774	351	AT1G70590 "AT1G70590" [Arabido	0.991	0.965	0.612	7.2e-107
UNIPROTKB|Q748V7	245	GSU2894 "SEL1 repeat-containin	0.555	0.775	0.366	3.3e-24
TIGR_CMR|GSU_2894	245	GSU_2894 "conserved hypothetic	0.555	0.775	0.366	3.3e-24
UNIPROTKB|E1C6X2	791	SEL1L "Uncharacterized protein	0.628	0.271	0.32	3.2e-20
UNIPROTKB|Q481Z1	235	CPS_2411 "Conserved domain pro	0.535	0.778	0.322	5.7e-20
TIGR_CMR|CPS_2411	235	CPS_2411 "conserved domain pro	0.535	0.778	0.322	5.7e-20
UNIPROTKB|F1PVX5	794	SEL1L "Uncharacterized protein	0.628	0.270	0.315	6e-19
UNIPROTKB|F1MGJ5	840	SEL1L "Uncharacterized protein	0.628	0.255	0.315	6.6e-19
UNIPROTKB|Q9UBV2	794	SEL1L "Protein sel-1 homolog 1	0.628	0.270	0.311	5.6e-18
UNIPROTKB|G3V9D3	793	Sel1l "Sel1 (Suppressor of lin	0.628	0.271	0.315	1.3e-17

TAIR|locus:2026774 AT1G70590 "AT1G70590" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 213/348 (61%), Positives = 257/348 (73%)

Query:     1 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----T 56
             MKQRTWP RS GSRF++L F      ++R  ++              S S S  S     
Sbjct:     1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSN 60

Query:    57 EGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG 116
             E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG
Sbjct:    61 EFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRG 120

Query:   117 -VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNL 175
              VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NL
Sbjct:   121 GVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNL 180

Query:   176 GISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235
             GI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAE
Sbjct:   181 GIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAE 240

Query:   236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV 295
             GGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD GH KAQ EHGL LF+EGEM+K+V
Sbjct:   241 GGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSV 300

Query:   296 VYLELATRAGETAADHVKNVILQQLSAT----SRDRAMLVVDSWRAMP 339
             +YLELA R GE AA  VK V+ QQLSAT    +   A+   ++WR +P
Sbjct:   301 LYLELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLP 348

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|Q748V7 GSU2894 "SEL1 repeat-containing protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 73/199 (36%), Positives = 105/199 (52%)

Query:    91 WNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147
             +  ALR  RE   A    R G  + +G GV +N  +AL  + K A  G   A    G MY
Sbjct:    41 YETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMY 100

Query:   148 WE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEA--VKLLYQASIAG 201
                    +    A+S Y +AA  G    QF +G  Y   +    + A  VK L QA+  G
Sbjct:   101 DNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG 160

Query:   202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 261
             ++RAQY++A     GR +  ++ EAA+WYLRAAE G+ RA Y  +L +  GEG+     +
Sbjct:   161 NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAE 220

Query:   262 ARKWMKRAADCGHGKAQLE 280
             A KW+++AA+ GH KAQ++
Sbjct:   221 AVKWLRKAAEGGHTKAQMD 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2894 GSU_2894 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 73/199 (36%), Positives = 105/199 (52%)

Query:    91 WNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY 147
             +  ALR  RE   A    R G  + +G GV +N  +AL  + K A  G   A    G MY
Sbjct:    41 YETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMY 100

Query:   148 WE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEA--VKLLYQASIAG 201
                    +    A+S Y +AA  G    QF +G  Y   +    + A  VK L QA+  G
Sbjct:   101 DNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG 160

Query:   202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 261
             ++RAQY++A     GR +  ++ EAA+WYLRAAE G+ RA Y  +L +  GEG+     +
Sbjct:   161 NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAE 220

Query:   262 ARKWMKRAADCGHGKAQLE 280
             A KW+++AA+ GH KAQ++
Sbjct:   221 AVKWLRKAAEGGHTKAQMD 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C6X2 SEL1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 3.2e-20, P = 3.2e-20
 Identities = 72/225 (32%), Positives = 115/225 (51%)

Query:   108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
             G+   HG RGV +N  +A + F + A  G++ AM   G MY E  D      E A+  ++
Sbjct:   378 GQLHLHGGRGVEQNHQRAFEYFNQAANAGNSHAMAFLGKMYSEGSDVVPQNNETALQYFK 437

Query:   162 QAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219
             +AA +G+P GQ  LG++YL  +  P N E A+K   +A+  G V  Q QL    + G GV
Sbjct:   438 KAADMGNPVGQSGLGMAYLYGRGVPVNYELALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 497

Query:   220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
               + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L
Sbjct:   498 KRDYKQALKYFNLASQGGHILAFYNLAQMHATGTGVMRSCHTAVELFKNVCERGRWSERL 557

Query:   280 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
                   + +G+   AVV YL LA +  E A  +    IL Q  A+
Sbjct:   558 MTAYNSYKDGDSNSAVVQYLLLAEQGYEVAQSNAA-FILDQKEAS 601

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|Q481Z1 CPS_2411 "Conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 62/192 (32%), Positives = 104/192 (54%)

Query:   111 FKHGRGVRKNLD--KALDSFLKGAARGSTLAMVDAGLMYWEMD--KKE--AAISLYRQAA 164
             F  G+   KN +  +A+  F K A +GS  A    G MY +    K++   A+  YR+AA
Sbjct:    22 FDKGKEAYKNNNYPQAITLFNKAAGQGSAKAQSYLGYMYTKGKGVKQDYTKAVDWYRKAA 81

Query:   165 VLGDPAGQFNLGISYLQAQPANAE--EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 222
               G+   Q++L I Y + +    +  +A++   +A+  G+ R+QY LAL  + G+GV  +
Sbjct:    82 EQGNARDQYSLAIIYEKGRGVAQDYNQAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQD 141

Query:   223 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 282
              ++A +WY +AAE G     Y+  + Y  G+G+   ++QA  W  +AA+ G  KAQ   G
Sbjct:   142 YKQALKWYSKAAEDGNAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLG 201

Query:   283 LGLFTEGEMMKA 294
             L L+ +G+ + A
Sbjct:   202 L-LYADGKGITA 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_2411 CPS_2411 "conserved domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 62/192 (32%), Positives = 104/192 (54%)

Query:   111 FKHGRGVRKNLD--KALDSFLKGAARGSTLAMVDAGLMYWEMD--KKE--AAISLYRQAA 164
             F  G+   KN +  +A+  F K A +GS  A    G MY +    K++   A+  YR+AA
Sbjct:    22 FDKGKEAYKNNNYPQAITLFNKAAGQGSAKAQSYLGYMYTKGKGVKQDYTKAVDWYRKAA 81

Query:   165 VLGDPAGQFNLGISYLQAQPANAE--EAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN 222
               G+   Q++L I Y + +    +  +A++   +A+  G+ R+QY LAL  + G+GV  +
Sbjct:    82 EQGNARDQYSLAIIYEKGRGVAQDYNQAIEWHTKAAEQGNPRSQYHLALIYYNGKGVTQD 141

Query:   223 LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 282
              ++A +WY +AAE G     Y+  + Y  G+G+   ++QA  W  +AA+ G  KAQ   G
Sbjct:   142 YKQALKWYSKAAEDGNAGVQYSLGVMYENGQGVAQDYKQAFDWYSKAAEQGDAKAQYNLG 201

Query:   283 LGLFTEGEMMKA 294
             L L+ +G+ + A
Sbjct:   202 L-LYADGKGITA 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PVX5 SEL1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 6.0e-19, P = 6.0e-19
 Identities = 71/225 (31%), Positives = 113/225 (50%)

Query:   108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
             G+   HG RGV +N  +A D F   A  G++ AM   G MY E  D      E A+  ++
Sbjct:   380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439

Query:   162 QAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219
             +AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV
Sbjct:   440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499

Query:   220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
               + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L
Sbjct:   500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559

Query:   280 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
                   + +G+   AV+ YL LA +  E A  +    IL Q  AT
Sbjct:   560 MTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAT 603

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|F1MGJ5 SEL1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 6.6e-19, P = 6.6e-19
 Identities = 71/225 (31%), Positives = 113/225 (50%)

Query:   108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
             G+   HG RGV +N  +A D F   A  G++ AM   G MY E  D      E A+  ++
Sbjct:   426 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 485

Query:   162 QAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219
             +AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV
Sbjct:   486 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 545

Query:   220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
               + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L
Sbjct:   546 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 605

Query:   280 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
                   + +G+   AV+ YL LA +  E A  +    IL Q  AT
Sbjct:   606 MTAYSSYKDGDSNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAT 649

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

UNIPROTKB|Q9UBV2 SEL1L "Protein sel-1 homolog 1" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 70/225 (31%), Positives = 113/225 (50%)

Query:   108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
             G+   HG RGV +N  +A D F   A  G++ AM   G MY E  D      E A+  ++
Sbjct:   380 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 439

Query:   162 QAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219
             +AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV
Sbjct:   440 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 499

Query:   220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
               + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L
Sbjct:   500 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 559

Query:   280 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
                   + +G+   AV+ YL LA +  E A  +    IL Q  A+
Sbjct:   560 MTAYNSYKDGDYNAAVIQYLLLAEQGYEVAQSNAA-FILDQREAS 603

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=NAS

UNIPROTKB|G3V9D3 Sel1l "Sel1 (Suppressor of lin-12) 1 homolog (C. elegans), isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 71/225 (31%), Positives = 112/225 (49%)

Query:   108 GKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-MD----KKEAAISLYR 161
             G+   HG RGV +N  +A D F   A  G++ AM   G MY E  D      E A+  ++
Sbjct:   379 GQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFK 438

Query:   162 QAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 219
             +AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q QL    + G GV
Sbjct:   439 KAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGV 498

Query:   220 DFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
               + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   + G    +L
Sbjct:   499 KRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERL 558

Query:   280 EHGLGLFTEGEMMKAVV-YLELATRAGETAADHVKNVILQQLSAT 323
                   + + +   AVV YL LA +  E A  +    IL Q  AT
Sbjct:   559 MTAYNSYKDDDYNAAVVQYLLLAEQGYEVAQSNAA-FILDQREAT 602

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94C27	FB84_ARATH	No assigned EC number	0.6206	0.9912	0.9658	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00009477001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (335 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016871001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (266 aa)			•						0.503
	GSVIVG00027131001	SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_41, whole genome shotg [...] (507 aa)							•		0.451
	GSVIVG00015195001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (953 aa)				•			•		0.450

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	3e-25
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	6e-21
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	4e-14
smart00671	36	smart00671, SEL1, Sel1-like repeats	2e-06
pfam08238	38	pfam08238, Sel1, Sel1 repeat	2e-05
smart00671	36	smart00671, SEL1, Sel1-like repeats	9e-05
pfam00646	48	pfam00646, F-box, F-box domain	7e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002
pfam08238	38	pfam08238, Sel1, Sel1 repeat	0.003
pfam12937	47	pfam12937, F-box-like, F-box-like	0.004

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score =  102 bits (256), Expect = 3e-25
 Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 13/202 (6%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY----WEMDKKEAAISLYRQAAVLGDP 169
           G     +  KAL S+ K A  G   A+   G MY         K  A   YR AA  G  
Sbjct: 50  GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA 109

Query: 170 AGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGH---VRAQYQLALCLHRG---RGVDF 221
              FNLG+ Y   +  P +  +A+K   +A+  G+     A Y+L L    G     V +
Sbjct: 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169

Query: 222 NLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEH 281
           + ++A   Y +AAE G   A       Y  G G+P   ++A +W K+AA+ G G A    
Sbjct: 170 DDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNL 229

Query: 282 GLGLFTEGEMMKAVVYLELATR 303
           GL ++  GE +K   +L  A  
Sbjct: 230 GL-MYLNGEGVKKAAFLTAAKE 250

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 90.9 bits (225), Expect = 6e-21
 Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 22/193 (11%)

Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK----KEAAISLYRQA 163
           G+ +  G+GV ++  KA D +   AA G   A+ + GLMY            A+  Y +A
Sbjct: 80  GQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139

Query: 164 AVLGDPAG---QFNLGISYLQ-----AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR 215
           A LG+       + LG++YL      A   + ++A+ L  +A+  G+  AQ  L     +
Sbjct: 140 AKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEK 199

Query: 216 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSH----------RQARKW 265
           G GV  +L++A RWY +AAE G   A YN  L Y  GEG+  +           +QA +W
Sbjct: 200 GLGVPRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEW 259

Query: 266 MKRAADCGHGKAQ 278
           +++A + G   A 
Sbjct: 260 LQKACELGFDNAC 272

Length = 292

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 178 SYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG 237
               A P +  +A+K   +A+  G   A   L      G+GV  +  +AA WY  AA  G
Sbjct: 48  GAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG 107

Query: 238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL-EHGLGL-FTEGEMMKAV 295
              A++N  L Y+ G G+PL   +A K+ ++AA  G+ +A L  + LGL +  G    AV
Sbjct: 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167

Query: 296 VYLELATRAGETAADH 311
            Y +         A  
Sbjct: 168 AYDDKKALYLYRKAAE 183

Length = 292

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY 238
             AQY L      G GV  +L++A  +Y +AAE G 
Sbjct: 1   AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 203 VRAQYQLA--LCLHRGRGVDFNLQEAARWYLRAAEGGY 238
             AQY L        G GV  + ++A  WY +AAE G 
Sbjct: 1   AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38

This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38

>gnl|CDD|214772 smart00671, SEL1, Sel1-like repeats

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274
             A YN    Y +G G+P    +A ++ K+AA+ G+
Sbjct: 1   AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36

These represent a subfamily of TPR (tetratricopeptide repeat) sequences. Length = 36

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
             LP D+L +I +      L   SLV K W   + 
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
          LP ++L +I +      L     V + W   + 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLID 33

Length = 41

>gnl|CDD|219757 pfam08238, Sel1, Sel1 repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 239 VRAMYN--TSLCYSFGEGLPLSHRQARKWMKRAADCGH 274
             A YN      Y  G G+P  + +A +W ++AA+ G+
Sbjct: 1   AEAQYNLGLYYMYLNGLGVPKDYEKALEWYRKAAEQGN 38

This short repeat is found in the Sel1 protein. It is related to TPR repeats. Length = 38

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDA 94
           + LP ++L +I +      L   +LVC+ W + 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.9
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.89
KOG1129	478	consensus TPR repeat-containing protein [General f	99.89
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.89
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.77
KOG1129	478	consensus TPR repeat-containing protein [General f	99.77
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.73
PRK11189	296	lipoprotein NlpI; Provisional	99.72
KOG1126	638	consensus DNA-binding cell division cycle control	99.72
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.71
PRK12370	553	invasion protein regulator; Provisional	99.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.7
KOG1126	638	consensus DNA-binding cell division cycle control	99.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.69
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.69
PRK12370	553	invasion protein regulator; Provisional	99.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.63
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.61
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.61
PRK11189	296	lipoprotein NlpI; Provisional	99.59
KOG1125	579	consensus TPR repeat-containing protein [General f	99.59
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.57
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.57
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.56
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.5
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.46
KOG2076	895	consensus RNA polymerase III transcription factor	99.44
PRK14574	822	hmsH outer membrane protein; Provisional	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.44
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.43
KOG1125	579	consensus TPR repeat-containing protein [General f	99.4
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.36
PLN03218	1060	maturation of RBCL 1; Provisional	99.32
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
PLN03218	1060	maturation of RBCL 1; Provisional	99.31
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.3
PLN02789	320	farnesyltranstransferase	99.3
PRK15359	144	type III secretion system chaperone protein SscB;	99.28
PLN02789	320	farnesyltranstransferase	99.27
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.26
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.22
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.18
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
PRK14574	822	hmsH outer membrane protein; Provisional	99.14
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.08
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.08
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.07
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.06
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.04
KOG2076	895	consensus RNA polymerase III transcription factor	99.04
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.95
PLN03077	857	Protein ECB2; Provisional	98.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.94
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.92
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.91
PLN03077	857	Protein ECB2; Provisional	98.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.9
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.9
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.86
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.86
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.83
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.83
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.81
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.81
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.75
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.75
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.74
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.74
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.71
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.69
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.69
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.69
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.67
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.63
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.61
PF12688	120	TPR_5: Tetratrico peptide repeat	98.59
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.57
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.56
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.54
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.51
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.5
PRK04841	903	transcriptional regulator MalT; Provisional	98.49
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.47
PF12688	120	TPR_5: Tetratrico peptide repeat	98.46
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.41
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.4
PRK11906	458	transcriptional regulator; Provisional	98.39
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.35
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.34
KOG1586	288	consensus Protein required for fusion of vesicles	98.34
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.33
PRK11906	458	transcriptional regulator; Provisional	98.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.32
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.3
PRK10803	263	tol-pal system protein YbgF; Provisional	98.3
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.3
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.29
PRK15331	165	chaperone protein SicA; Provisional	98.29
KOG0553	304	consensus TPR repeat-containing protein [General f	98.29
PRK10803	263	tol-pal system protein YbgF; Provisional	98.28
KOG0553	304	consensus TPR repeat-containing protein [General f	98.26
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.22
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.21
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.21
PRK15331	165	chaperone protein SicA; Provisional	98.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.1
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.07
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.01
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.95
KOG1586	288	consensus Protein required for fusion of vesicles	97.93
KOG4555	175	consensus TPR repeat-containing protein [Function	97.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.9
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.9
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	97.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.86
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	97.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.81
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.8
KOG4555	175	consensus TPR repeat-containing protein [Function	97.8
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	97.78
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	97.77
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.76
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.7
PF13371	73	TPR_9: Tetratricopeptide repeat	97.67
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.62
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.62
PF13371	73	TPR_9: Tetratricopeptide repeat	97.57
PF13428	44	TPR_14: Tetratricopeptide repeat	97.55
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.54
KOG2471	696	consensus TPR repeat-containing protein [General f	97.53
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.42
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.39
KOG1585	308	consensus Protein required for fusion of vesicles	97.34
KOG1585	308	consensus Protein required for fusion of vesicles	97.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.29
PF13512	142	TPR_18: Tetratricopeptide repeat	97.28
PF13428	44	TPR_14: Tetratricopeptide repeat	97.25
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.22
PF13512	142	TPR_18: Tetratricopeptide repeat	97.13
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.08
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.05
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.02
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.97
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.95
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.95
PF13431	34	TPR_17: Tetratricopeptide repeat	96.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.92
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.85
PF13431	34	TPR_17: Tetratricopeptide repeat	96.84
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.79
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.77
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.7
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.7
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.67
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.56
KOG2471	696	consensus TPR repeat-containing protein [General f	96.42
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.25
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.17
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.1
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.69
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.59
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.38
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.31
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.01
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.6
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.46
KOG3364	149	consensus Membrane protein involved in organellar	94.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.24
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.17
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.02
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.93
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.75
KOG4234	271	consensus TPR repeat-containing protein [General f	93.72
KOG4234	271	consensus TPR repeat-containing protein [General f	93.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.36
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.11
KOG3783	546	consensus Uncharacterized conserved protein [Funct	93.08
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.07
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.79
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.65
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.64
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.3
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.26
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.91
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.58
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.32
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.08
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.94
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.55
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	90.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.09
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.91
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.82
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.66
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.52
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.35
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.74
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	87.84
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.72
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.56
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	87.11
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.98
KOG4814	872	consensus Uncharacterized conserved protein [Funct	86.73
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	86.38
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.69
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	85.02
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	84.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	84.55
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	84.48
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	84.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.25
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.06
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.37
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.05
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	82.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	82.62
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	82.55
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.47
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	82.22
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	81.99
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.24
KOG3364	149	consensus Membrane protein involved in organellar	80.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	80.79
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	80.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.34

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=4.2e-25  Score=201.81  Aligned_cols=249  Identities=19%  Similarity=0.156  Sum_probs=207.8

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKE  154 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~  154 (342)
                      .+|+...|+.-+....+.-+.  .+.++++||.+|..    .+.++.|+..|.+|+..  +++.++-++|-+|.+.|+++
T Consensus       230 ~~Gei~~aiq~y~eAvkldP~--f~dAYiNLGnV~ke----~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld  303 (966)
T KOG4626|consen  230 AQGEIWLAIQHYEEAVKLDPN--FLDAYINLGNVYKE----ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD  303 (966)
T ss_pred             hcchHHHHHHHHHHhhcCCCc--chHHHhhHHHHHHH----HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence            567777777666555554433  56788888888888    57888888888888886  47788888888888889999


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340          155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY  230 (342)
Q Consensus       155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  230 (342)
                      -||..|+++++.  ..++|+.|||.++.  +.|+..+|..+|.+++..  .++++++|||.+|.+    .+.+++|..+|
T Consensus       304 lAI~~Ykral~~~P~F~~Ay~NlanALk--d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly  377 (966)
T KOG4626|consen  304 LAIDTYKRALELQPNFPDAYNNLANALK--DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLY  377 (966)
T ss_pred             HHHHHHHHHHhcCCCchHHHhHHHHHHH--hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHH
Confidence            999999998765  77999999999998  889999999999998774  689999999999987    66889999999


Q ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          231 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       231 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      ++|++.  +.+.++.|||.+|.. .|   ++++|+.+|+.|+...+  ++++.|+|..|..+|+...|+..|.+|+..++
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kq-qg---nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQ-QG---NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHh-cc---cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            999886  678889999999954 34   89999999999988754  78889999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          307 TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       307 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .-|...-.+...+.+.+.+.+|++-+++.+++.|.
T Consensus       454 t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  454 TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            77776666677778889999999999999888774

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-24  Score=197.86  Aligned_cols=247  Identities=18%  Similarity=0.105  Sum_probs=198.5

Q ss_pred             hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 019340           79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      |.+.+|..-+...++..+.  .+.++.+||-++..    .|+.-.|+.+|++|+.++  .++++++||.+|.+.+.+++|
T Consensus       198 Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  198 GRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNA----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             cccchhHHHHHHHHhhCCc--eeeeehhcchHHhh----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence            4444454444444444332  45566677777666    588889999999998874  789999999999999999999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340          157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR  232 (342)
Q Consensus       157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  232 (342)
                      +..|.+|+..  +++.++-|||.+|+  +.|+.+-||..|+++++  +..++|+.|||..+.+    .++..+|+.+|.+
T Consensus       272 vs~Y~rAl~lrpn~A~a~gNla~iYy--eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  272 VSCYLRALNLRPNHAVAHGNLACIYY--EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAVDCYNK  345 (966)
T ss_pred             HHHHHHHHhcCCcchhhccceEEEEe--ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHHHHHHH
Confidence            9999999866  77889999999999  89999999999999887  4689999999999987    6788999999999


Q ss_pred             HHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          233 AAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       233 A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                      |+..  .++++++|||.+|... |   ..++|..+|+++++-  +-+.++.|||.+|.++|++++|+.+|+.|+++.+..
T Consensus       346 aL~l~p~hadam~NLgni~~E~-~---~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f  421 (966)
T KOG4626|consen  346 ALRLCPNHADAMNNLGNIYREQ-G---KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF  421 (966)
T ss_pred             HHHhCCccHHHHHHHHHHHHHh-c---cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence            9887  6899999999999652 2   899999999999886  557888999999999999999999999999998766


Q ss_pred             HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          309 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       309 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      |..+..+...+-+.++...|+..+.+.....|+
T Consensus       422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            655555555555558888888877776555553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=9.7e-22  Score=188.92  Aligned_cols=237  Identities=27%  Similarity=0.350  Sum_probs=206.7

Q ss_pred             HHHHHHHHhCcCCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHhcCC-----CH
Q 019340           87 VCKSWNDALRPLREAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAA-------RGSTLAMVDAGLMYWEMD-----KK  153 (342)
Q Consensus        87 ~~~~~~~~~~~~~~a~a~~~lg~~y~~g-~g~~~~~~~A~~~~~~A~~-------~~~~~a~~~lg~~~~~~~-----~~  153 (342)
                      ....|.+..++.++..+++.+|.||..| .|+.+|.++|+.+|+.++.       .+++.+++.+|.+|..+.     |.
T Consensus       230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~  309 (552)
T KOG1550|consen  230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY  309 (552)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence            3467899999999999999999999999 7999999999999999998       789999999999999873     78


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340          154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQ-PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR  232 (342)
Q Consensus       154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~-~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  232 (342)
                      +.|+.+|.++++.+++++++.||.+|..|. ..|+.+|.+||..|++.|+..|+++++.||..|.|+..+..+|+.||++
T Consensus       310 ~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~  389 (552)
T KOG1550|consen  310 EKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKK  389 (552)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence            999999999999999999999999999887 5789999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHcCCC---------------------------------------CcccHHHHHHHHHHHHHcC
Q 019340          233 AAEGGYVRAMYNTSLCYSFGEG---------------------------------------LPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       233 A~~~~~~~a~~~lg~~y~~g~g---------------------------------------~~~~~~~A~~~~~~a~~~~  273 (342)
                      +++.+.+.|++.++.++..|.+                                       +..+...+...+.++...+
T Consensus       390 aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g  469 (552)
T KOG1550|consen  390 AAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG  469 (552)
T ss_pred             HHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc
Confidence            9999999999999988876652                                       1124444555555555566


Q ss_pred             CHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc
Q 019340          274 HGKAQLEHGLGLFTE----GEMMKAVVYLELATRAGETAADHVKNVILQQLSATS  324 (342)
Q Consensus       274 ~~~a~~~Lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~  324 (342)
                      +..+...||..|+.-    .+++.|..+|.+|.+.+ ..+..+++.+..+..+-.
T Consensus       470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~  523 (552)
T KOG1550|consen  470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIK  523 (552)
T ss_pred             CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcc
Confidence            677778888877653    47999999999999888 888888888888876554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.89  E-value=9.1e-21  Score=169.47  Aligned_cols=202  Identities=31%  Similarity=0.411  Sum_probs=171.4

Q ss_pred             CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCH
Q 019340          114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANA  187 (342)
Q Consensus       114 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~  187 (342)
                      +.....++..|+.++.++...+++.+++.++.+|..+    .|..+|+.||+++++.+++.++++||.+|..|  +..|+
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~  129 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL  129 (292)
T ss_pred             cccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence            3356788888999999988888888888888888776    57888999999888889999999999998874  47789


Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          188 EEAVKLLYQASIAGHVRA---QYQLALCLHRG---RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       188 ~~A~~~~~~a~~~~~~~a---~~~lg~~~~~g---~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      .+|..||+++++.|++.+   ++.||.+|..|   .++..+...|+.+|.+|...+++.++++||.+|..|.|+++|..+
T Consensus       130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~  209 (292)
T COG0790         130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK  209 (292)
T ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence            999999999999998888   89999999888   667777788999999999999999999999999889889999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340          262 ARKWMKRAADCGHGKAQLEHGLGLFTEG---------------EMMKAVVYLELATRAGETAADHVKNVI  316 (342)
Q Consensus       262 A~~~~~~a~~~~~~~a~~~Lg~~~~~~~---------------~~~~A~~~~~~a~~~~~~~a~~~~~~~  316 (342)
                      |..||++|++.++..++++++ ++...|               +...|..|+.++...+...++..+..+
T Consensus       210 A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  278 (292)
T COG0790         210 AFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL  278 (292)
T ss_pred             HHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            999999999988888888888 455443               888899999999999888887766533

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=2.8e-21  Score=165.03  Aligned_cols=302  Identities=16%  Similarity=0.100  Sum_probs=188.9

Q ss_pred             cccccccccCCCChhhHHHHHHhhhhhcccccccccccCCCCCCCCCCcHHHHHHHHh------------hCCChhHHhh
Q 019340           17 ALQFPITEKDNRRPELTASARKARIKRRSRFSCSRSIKSTEGHDFASLPFDVLNKIAA------------SFTLPQLRAA   84 (342)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a   84 (342)
                      ..+++++.+. .+|..+.|.|.+|+++.|+-..       +.++|.++++..++++++            .|...|.+.+
T Consensus       127 A~rt~rta~t-ar~~~S~sgr~~RlgtaSmaa~-------~dG~f~nlsRLN~tkYa~~p~l~kaLFey~fyhenDv~~a  198 (478)
T KOG1129|consen  127 ARRTTRTART-ARSLGSRSGRASRLGTASMAAF-------NDGKFYNLSRLNPTKYAERPTLVKALFEYLFYHENDVQKA  198 (478)
T ss_pred             hccCcccccc-ccccccccchhhhhhhhhhhcc-------CCcceeehhhcCchhhccChHHHHHHHHHHHHhhhhHHHH
Confidence            4555555554 7777888899999988887653       334555555444444332            2344555566


Q ss_pred             HHHHHHHHHH--h------CcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340           85 SLVCKSWNDA--L------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA  155 (342)
Q Consensus        85 ~~~~~~~~~~--~------~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~  155 (342)
                      ..+|+.....  .      ..+.++++..++|.||.+    .+-+.+|...++.+++. .+++....|+.+|.+...++.
T Consensus       199 H~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylr----Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~  274 (478)
T KOG1129|consen  199 HSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLR----LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPER  274 (478)
T ss_pred             HHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHH----hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHH
Confidence            5555443322  1      223477899999999999    35667777778877775 467777777777777777777


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      |+..|...++.  ++..-....+.++.  ..+++++|+++|+.+++..  +.++..-+|.-|++    .++.+.|..+|+
T Consensus       275 AL~~~~~gld~fP~~VT~l~g~ARi~e--am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYR  348 (478)
T KOG1129|consen  275 ALLVIGEGLDSFPFDVTYLLGQARIHE--AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYR  348 (478)
T ss_pred             HHHHHhhhhhcCCchhhhhhhhHHHHH--HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHH
Confidence            77777776665  33444444445555  6666777777777766643  55555555555555    446667777777


Q ss_pred             HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +.+..|  ++.-..|+|.|...+.    .++.++..|++|+..     .-++.|||||.+....||+..|..+|+.++-.
T Consensus       349 RiLqmG~~speLf~NigLCC~yaq----Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  349 RILQMGAQSPELFCNIGLCCLYAQ----QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             HHHHhcCCChHHHhhHHHHHHhhc----chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            776664  5666667777665533    666677777776543     11455677777777777777777777777666


Q ss_pred             CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          305 GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       305 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ++.++..+.++.......+++++|+.+++......|
T Consensus       425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            555555544444445566667777666666655554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.89  E-value=1e-20  Score=169.10  Aligned_cols=202  Identities=31%  Similarity=0.446  Sum_probs=181.1

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC----CC
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM----DK  152 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~----~~  152 (342)
                      ..+++..+.    .+....+..+++.+++.+|.+|..|.|+.+|.++|+.||+++++.|++.++++||.+|..+    .|
T Consensus        53 ~~~~~~~a~----~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKAL----KSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHH----HHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccC
Confidence            445555553    4556666677889999999999999999999999999999999999999999999999985    49


Q ss_pred             HHHHHHHHHHHHhCCCHHH---HHHHHHHHHcC---C--ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHH
Q 019340          153 KEAAISLYRQAAVLGDPAG---QFNLGISYLQA---Q--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ  224 (342)
Q Consensus       153 ~~~A~~~~~~a~~~~~~~a---~~~Lg~~~~~g---~--~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~  224 (342)
                      ..+|..||++|++.|++.+   ++.||.+|..|   .  ..+...|+.+|.++...+++.++++||.+|..|.|++.|..
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~  208 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLK  208 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHH
Confidence            9999999999999999999   99999999977   2  33556999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc----------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340          225 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL----------SHRQARKWMKRAADCGHGKAQLEHG  282 (342)
Q Consensus       225 ~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~----------~~~~A~~~~~~a~~~~~~~a~~~Lg  282 (342)
                      +|+.||.+|++.++..+++.++.+|..|.|++.          +...|..|+.++...+...++..+-
T Consensus       209 ~A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (292)
T COG0790         209 KAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR  276 (292)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999999988888888776          9999999999999998887775544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-19  Score=173.97  Aligned_cols=229  Identities=26%  Similarity=0.337  Sum_probs=201.6

Q ss_pred             HHHHhCcCCCHHHHHHHH------HHHHcCCCCcCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhcC-----CCHHH
Q 019340           91 WNDALRPLREAMVLLRWG------KRFKHGRGVRKN----LDKALDSFLKGAARGSTLAMVDAGLMYWEM-----DKKEA  155 (342)
Q Consensus        91 ~~~~~~~~~~a~a~~~lg------~~y~~g~g~~~~----~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~-----~~~~~  155 (342)
                      .....+........+.+|      .++..|.+...+    ...|+.+|+.+++.|+..+++.+|.+|..+     +|+++
T Consensus       188 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~  267 (552)
T KOG1550|consen  188 HYNKAASSTSSDATFSLGPNAQRLQLSLEGEGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLES  267 (552)
T ss_pred             hhhhccCccccccccCCCcchhhhhccccccCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHH
Confidence            444455545555555556      677777776666    688999999999999999999999999987     69999


Q ss_pred             HHHHHHHHHh-------CCCHHHHHHHHHHHHcC--Ccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHH
Q 019340          156 AISLYRQAAV-------LGDPAGQFNLGISYLQA--QPA-NAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE  225 (342)
Q Consensus       156 A~~~~~~a~~-------~~~~~a~~~Lg~~~~~g--~~~-~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~  225 (342)
                      |+.+|+.+++       .+++.+++.||.+|..|  ... |+.+|+.+|.++++.+++++++.||.||..|. ..+|..+
T Consensus       268 a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~  346 (552)
T KOG1550|consen  268 AIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRR  346 (552)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHH
Confidence            9999999988       79999999999999975  355 89999999999999999999999999999987 4589999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHc
Q 019340          226 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-GEMMKAVVYLELATRA  304 (342)
Q Consensus       226 A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-~~~~~A~~~~~~a~~~  304 (342)
                      |.+||..|+..|+..|+++++.||..|.|++++..+|..||+++++.+++.+.+.++..+... +.+..+.-++....+.
T Consensus       347 A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  347 AFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999998877654 8899999999999999


Q ss_pred             CcHHHHHHHHHHHhhc
Q 019340          305 GETAADHVKNVILQQL  320 (342)
Q Consensus       305 ~~~~a~~~~~~~~~~~  320 (342)
                      +...++.+...+....
T Consensus       427 g~~~~q~~a~~l~~~~  442 (552)
T KOG1550|consen  427 GYEVAQSNAAYLLDQS  442 (552)
T ss_pred             hhhHHhhHHHHHHHhc
Confidence            9888888777666555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=7.2e-18  Score=165.76  Aligned_cols=87  Identities=8%  Similarity=0.003  Sum_probs=71.8

Q ss_pred             HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 019340           70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMY  147 (342)
Q Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~  147 (342)
                      .++...+..+++.+|...+.+.++..+   ++..++++|.+|..    .+++++|+..+.++++.+  +..+++.+|.+|
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~----l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~  204 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNA----LGDWEKVVEDTTAALELDPDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            344557888999999988877776543   57789999999998    589999999999999874  788999999999


Q ss_pred             hcCCCHHHHHHHHHHH
Q 019340          148 WEMDKKEAAISLYRQA  163 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a  163 (342)
                      ...|++++|+..|..+
T Consensus       205 ~~lg~~~eA~~~~~~~  220 (615)
T TIGR00990       205 DGLGKYADALLDLTAS  220 (615)
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999998887655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=8.4e-18  Score=165.28  Aligned_cols=249  Identities=13%  Similarity=0.033  Sum_probs=195.1

Q ss_pred             ChhHHhhHHHHHHHHHHhC-cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340           78 LPQLRAASLVCKSWNDALR-PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE  154 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~-~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~  154 (342)
                      .+.+.+|...+...++... ....+.+++.+|.++..    .+++++|+..|+++++..  +..+++.+|.++...|+++
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~  382 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD  382 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence            3566777766666655431 23467788999999987    589999999999998864  6788899999999999999


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340          155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY  230 (342)
Q Consensus       155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  230 (342)
                      +|+..|+++++.  +++.+++++|.++.  ..+++++|+.+|+++++.  ++..++.++|.++..    .+++++|+..|
T Consensus       383 eA~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~  456 (615)
T TIGR00990       383 KAEEDFDKALKLNSEDPDIYYHRAQLHF--IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATF  456 (615)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence            999999998865  67899999999999  889999999999998875  578889999999987    77899999999


Q ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--H------HHHHHHH-HhhhcCCHHHHHHHHH
Q 019340          231 LRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--K------AQLEHGL-GLFTEGEMMKAVVYLE  299 (342)
Q Consensus       231 ~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~------a~~~Lg~-~~~~~~~~~~A~~~~~  299 (342)
                      ++++..  .++.+++.+|.++.. .|   ++++|+..|++++...+.  .      .+.+.+. ++...|++++|..+|+
T Consensus       457 ~~al~~~P~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~  532 (615)
T TIGR00990       457 RRCKKNFPEAPDVYNYYGELLLD-QN---KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE  532 (615)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHH-cc---CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999875  578889999999965 33   899999999999876321  1      1223333 3344689999999999


Q ss_pred             HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +++..++........+...+...++.++|...+++..+..+
T Consensus       533 kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       533 KALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            99988766655555666666777888888888877655543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.7e-17  Score=146.59  Aligned_cols=230  Identities=21%  Similarity=0.161  Sum_probs=186.1

Q ss_pred             CCCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcC-CCHH----HHH---------------------------HHH
Q 019340           61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPL-REAM----VLL---------------------------RWG  108 (342)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~a~----a~~---------------------------~lg  108 (342)
                      |...+.-.-..+...+...|+++|...+....+..+-- ++-+    ++|                           .+|
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa  337 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA  337 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence            44434444444555678888888888887777664321 1111    111                           133


Q ss_pred             HHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340          109 KRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP  184 (342)
Q Consensus       109 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~  184 (342)
                      ..|.-    +++.++|+.+|++|++++  ...+|.-+|.-|.++++...|+..|++|++.  .|-.|||.||.+|.  ..
T Consensus       338 NYYSl----r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe--im  411 (559)
T KOG1155|consen  338 NYYSL----RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE--IM  411 (559)
T ss_pred             hHHHH----HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH--Hh
Confidence            33333    688999999999999985  7789999999999999999999999999987  56789999999999  89


Q ss_pred             cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcccHH
Q 019340          185 ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV--RAMYNTSLCYSFGEGLPLSHR  260 (342)
Q Consensus       185 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~--~a~~~lg~~y~~g~g~~~~~~  260 (342)
                      +.+.-|+-||++|++  +.++..+..||.||..    ..++++|+.+|.+|+..++.  .+++.||.+|.+    .++..
T Consensus       412 ~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~LakLye~----l~d~~  483 (559)
T KOG1155|consen  412 KMHFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE----LKDLN  483 (559)
T ss_pred             cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHhHH
Confidence            999999999999977  5799999999999987    78999999999999999877  899999999976    44999


Q ss_pred             HHHHHHHHHHHc-------CC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          261 QARKWMKRAADC-------GH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       261 ~A~~~~~~a~~~-------~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +|..+|++.++.       ++  ..+...|+.-+...+++++|..|..+++..
T Consensus       484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            999999999872       22  467778999999999999999988877755

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=6.3e-17  Score=159.32  Aligned_cols=83  Identities=19%  Similarity=0.020  Sum_probs=44.6

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~  153 (342)
                      +..|++.+|...+..+.+..++  ++.+++.+|.++..    .+++++|+..|++++..  +++.++..+|.++...|++
T Consensus        87 l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~  160 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLK----SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE  160 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh
Confidence            3455555555555555554433  44555555555555    35555555555555553  3455555555555555555


Q ss_pred             HHHHHHHHHHH
Q 019340          154 EAAISLYRQAA  164 (342)
Q Consensus       154 ~~A~~~~~~a~  164 (342)
                      ++|+..+++++
T Consensus       161 ~eA~~~~~~~~  171 (656)
T PRK15174        161 LQAISLARTQA  171 (656)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=8.7e-17  Score=158.34  Aligned_cols=263  Identities=13%  Similarity=-0.027  Sum_probs=205.8

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      .++.-+..++..|++.+|..++.......+.  ++.+++.||.+...    .+++++|+..|++++..  +++.++..+|
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~----~g~~~~A~~~l~~~l~~~P~~~~a~~~la  117 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLA----SSQPDAVLQVVNKLLAVNVCQPEDVLLVA  117 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhh----cCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            3455566778999999999999888877766  88999999998887    69999999999999986  5899999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCC---
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR---  217 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~---  217 (342)
                      .++...|++++|+..|++++..  +++.++..+|.++.  ..+++++|+..+++++.  ++++.++..++..+..|.   
T Consensus       118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~--~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~e  195 (656)
T PRK15174        118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV--LMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPE  195 (656)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999874  78999999999999  88899999999987654  345555544433222111   


Q ss_pred             ------------C---------------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHH----HHHH
Q 019340          218 ------------G---------------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHR----QARK  264 (342)
Q Consensus       218 ------------~---------------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~----~A~~  264 (342)
                                  .               ..+++++|+..|++++..  +++.+++++|.+|... |   +++    +|+.
T Consensus       196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~-G---~~~eA~~~A~~  271 (656)
T PRK15174        196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS-G---RSREAKLQAAE  271 (656)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C---CchhhHHHHHH
Confidence                        0               045677777777777765  4677888888888552 2   444    4889


Q ss_pred             HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      +|++++..  +++.++.++|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++.....|.
T Consensus       272 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        272 HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99998875  567888899999999999999999999998886655544444455555668889999988888776664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=1.8e-16  Score=147.41  Aligned_cols=252  Identities=15%  Similarity=0.019  Sum_probs=166.9

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHH
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGL  145 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~  145 (342)
                      +...+..+++.+|...+.+..+..+  .++.+++.+|.+|..    .+++++|+..+++++...+      ..++..+|.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~  115 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRR----RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ  115 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHH----cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            3444566777777777776666543  356777777877776    4778888888877776531      245677788


Q ss_pred             HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHhcC
Q 019340          146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H-----VRAQYQLALCLHRG  216 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~~~~g  216 (342)
                      +|...|++++|+.+|+++++.  .+..++..++.++.  ..+++++|+..|+++++.+  +     ...+..+|.++.. 
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-  192 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ--QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-  192 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH--HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-
Confidence            887778888888888887764  44567777777777  6777777777777776643  1     1234566666665 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEM  291 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~  291 (342)
                         .+++++|+.+|+++++.  .+..+++.+|.+|.. .|   ++++|+.+|+++...++   ...+..|+.+|...|++
T Consensus       193 ---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  265 (389)
T PRK11788        193 ---RGDLDAARALLKKALAADPQCVRASILLGDLALA-QG---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE  265 (389)
T ss_pred             ---CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence               56777777777777654  356677777777754 22   77777777777776532   24456777777777777


Q ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          292 MKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       292 ~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ++|..+++++.+..+..... ..........++.++|..++++..+..|
T Consensus       266 ~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        266 AEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             HHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence            77777777777665433222 3344444555677777777776655554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.78  E-value=3.1e-16  Score=163.95  Aligned_cols=257  Identities=18%  Similarity=0.091  Sum_probs=178.9

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH-----------
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL-----------  138 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~-----------  138 (342)
                      ....+..|++.+|...+.+.++..++  ++.+++.||.+|..    .+++++|+.+|+++++..  +..           
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~  349 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQ----QGDRARAVAQFEKALALDPHSSNRDKWESLLKVN  349 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence            34456778999999888888877554  78899999999988    589999999999998753  111           


Q ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340          139 ---AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL  211 (342)
Q Consensus       139 ---a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~  211 (342)
                         ....+|.++...|++++|+.+|+++++.  +++.+++.||.++.  ..+++++|+.+|+++++  +++..++..++.
T Consensus       350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~--~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM--ARKDYAAAERYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence               1234577777788888888888887755  66777888888887  77788888888888776  346666666666


Q ss_pred             HHhcCC--------------------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340          212 CLHRGR--------------------------------------GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF  251 (342)
Q Consensus       212 ~~~~g~--------------------------------------~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~  251 (342)
                      +|..+.                                      ...+++++|+.+|++++..  +++.+++.+|.+|..
T Consensus       428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            553210                                      0135677777777777765  466777777777754


Q ss_pred             CCCCcccHHHHHHHHHHHHHc--CCH------------------------------------------------------
Q 019340          252 GEGLPLSHRQARKWMKRAADC--GHG------------------------------------------------------  275 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~--~~~------------------------------------------------------  275 (342)
                       .|   ++++|+..|+++++.  +++                                                      
T Consensus       508 -~G---~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l  583 (1157)
T PRK11447        508 -AG---QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL  583 (1157)
T ss_pred             -cC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence             22   677777776666543  222                                                      


Q ss_pred             --------------------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          276 --------------------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       276 --------------------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                                          ..++.||.++...|++++|+.+|+++++..+.+....+.+...+...++.++|++.++.+
T Consensus       584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                234556777777788888888888888776555555555555556667788888877777


Q ss_pred             hcCCC
Q 019340          336 RAMPS  340 (342)
Q Consensus       336 ~~~~~  340 (342)
                      .+..|
T Consensus       664 l~~~p  668 (1157)
T PRK11447        664 PATAN  668 (1157)
T ss_pred             hccCC
Confidence            66554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.77  E-value=4.1e-16  Score=163.10  Aligned_cols=249  Identities=15%  Similarity=0.058  Sum_probs=192.1

Q ss_pred             HhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH-----
Q 019340           73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL-----  145 (342)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~-----  145 (342)
                      ...+..+++.+|...+.+..+..+.  ++.+++.||.+|..    .+++++|+.+|+++++.  ++..++..++.     
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~  432 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ  432 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            3445778889999888888877654  78899999999998    58999999999999985  35555554444     


Q ss_pred             -------------------------------------HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC
Q 019340          146 -------------------------------------MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN  186 (342)
Q Consensus       146 -------------------------------------~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~  186 (342)
                                                           ++...|++++|+.+|+++++.  +++.+++.+|.+|.  ..++
T Consensus       433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~--~~G~  510 (1157)
T PRK11447        433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR--QAGQ  510 (1157)
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCC
Confidence                                                 444578999999999998865  78899999999999  8899


Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH------------------------------
Q 019340          187 AEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA------------------------------  234 (342)
Q Consensus       187 ~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~------------------------------  234 (342)
                      +++|+..|+++++  ++++++++.+|.++..    .++.++|+.+++++.                              
T Consensus       511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            9999999999876  4688888888876654    445566655554321                              


Q ss_pred             ------------HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340          235 ------------EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       235 ------------~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                                  ...++..+..+|.+|.. .   +++++|+.+|++++..  +++.++++++.+|...|++++|+..|++
T Consensus       587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~---g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        587 GKEAEAEALLRQQPPSTRIDLTLADWAQQ-R---GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                        12455677888888855 2   3899999999999875  6688899999999999999999999998


Q ss_pred             HHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          301 ATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       301 a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      +++..+  ......++.+  ....++.++|.++++++....
T Consensus       663 ll~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        663 LPATANDSLNTQRRVALA--WAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HhccCCCChHHHHHHHHH--HHhCCCHHHHHHHHHHHhhhC
Confidence            887754  4444444443  445688888998888887654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.77  E-value=9e-16  Score=156.47  Aligned_cols=250  Identities=17%  Similarity=0.096  Sum_probs=187.4

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK  152 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~  152 (342)
                      .+..+++.+|...+..+....+.  ++..++.+|.+|..    .+++++|+.+|+++++.  ++..+++.+|.++...|+
T Consensus       441 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  514 (899)
T TIGR02917       441 YLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLG----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN  514 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence            34566777777766666655433  67788888888888    58899999999998875  477888889999988899


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      +++|+.+|+++++.  .+..++..++.++.  ..+++++|+.+|++++..  .+...++.++.+|..    .+++++|+.
T Consensus       515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~  588 (899)
T TIGR02917       515 PDDAIQRFEKVLTIDPKNLRAILALAGLYL--RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG----KGQLKKALA  588 (899)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHHH
Confidence            99999999988764  67788888888888  678888888888887664  466777788888876    667888888


Q ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          229 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       229 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +++++++.  .++.+++.+|.+|.. .|   ++++|+.+|+++++.  .++.++..+|.++...|++++|..+|+++++.
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       589 ILNEAADAAPDSPEAWLMLGRAQLA-AG---DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL  664 (899)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            88888765  467788888888854 22   888888888888765  45777788888888888888888888888877


Q ss_pred             CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          305 GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       305 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      .+.+..............++.++|..+++.+....|
T Consensus       665 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  700 (899)
T TIGR02917       665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP  700 (899)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            655444444444444555666666666666655444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=142.25  Aligned_cols=218  Identities=17%  Similarity=0.170  Sum_probs=188.2

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~  153 (342)
                      +..|=+.+|...++..+   ..++.++.+..|..+|.+    ..++..|+..|...++.  ++...+...++++..+++.
T Consensus       234 lrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~r----idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  234 LRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQR----IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHH----hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            45566667765444444   447789999999999999    58999999999999996  5788888999999999999


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340          154 EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARW  229 (342)
Q Consensus       154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~  229 (342)
                      ++|+++|+.+++.  .+.++...+|.-|++  .++++.|+.||++.+++|  +++.+.|+|.|+..+    +.++-++..
T Consensus       307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY--~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya----qQ~D~~L~s  380 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPINVEAIACIAVGYFY--DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA----QQIDLVLPS  380 (478)
T ss_pred             HHHHHHHHHHHhcCCccceeeeeeeecccc--CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh----cchhhhHHH
Confidence            9999999999977  778999999999995  459999999999999997  899999999999984    478889999


Q ss_pred             HHHHHHC-----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          230 YLRAAEG-----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       230 ~~~A~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      |++|+..     .-++.|||||.+. .+.|   |...|.++|+.++..  +|.++++|||.+-.+.|+.++|..+|..|.
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~va-V~iG---D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVA-VTIG---DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeE-Eecc---chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            9999864     2478999999998 5666   999999999999875  679999999999999999999999999998


Q ss_pred             HcCcHHHH
Q 019340          303 RAGETAAD  310 (342)
Q Consensus       303 ~~~~~~a~  310 (342)
                      ...|.-+.
T Consensus       457 s~~P~m~E  464 (478)
T KOG1129|consen  457 SVMPDMAE  464 (478)
T ss_pred             hhCccccc
Confidence            87765443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.77  E-value=6.5e-16  Score=157.52  Aligned_cols=249  Identities=20%  Similarity=0.135  Sum_probs=165.5

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH----------
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL----------  138 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~----------  138 (342)
                      .+......+++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|++++...  +..          
T Consensus       607 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  680 (899)
T TIGR02917       607 LGRAQLAAGDLNKAVSSFKKLLALQPD--SALALLLLADAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLL  680 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            333445667777777766666655433  56677777777776    467777777777776642  334          


Q ss_pred             ------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          139 ------------------------AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       139 ------------------------a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                                              .+..+|.++...|++++|+.+|++++.. .+...++.++.++.  ..|++++|+..
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~  758 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL--ASGNTAEAVKT  758 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH--HCCCHHHHHHH
Confidence                                    4444555555556666666666665544 22345555666665  55666666666


Q ss_pred             HHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340          194 LYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA  269 (342)
Q Consensus       194 ~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  269 (342)
                      +++.++  ++++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++.++|.++....    + .+|+.+++++
T Consensus       759 ~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~-~~A~~~~~~~  829 (899)
T TIGR02917       759 LEAWLKTHPNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK----D-PRALEYAEKA  829 (899)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----c-HHHHHHHHHH
Confidence            666655  3467777777777776    56778888888887765  46667777777775422    5 6688888887


Q ss_pred             HHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          270 ADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       270 ~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      +..  +++..+..+|.++...|++++|..+|+++++.++.+..............+..++|+.++++++
T Consensus       830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            765  5566777888888888888888888888888776555555555556666677888888777664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.77  E-value=7.3e-16  Score=155.90  Aligned_cols=245  Identities=12%  Similarity=0.061  Sum_probs=140.2

Q ss_pred             HHhhHHHHHHHHHHhCc-CC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 019340           81 LRAASLVCKSWNDALRP-LR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        81 ~~~a~~~~~~~~~~~~~-~~--~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      +.++...|....+..+. .+  ++.+++.||.++..     +++.+|+..|.+++... +......+|.++...|++++|
T Consensus       454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-----~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeA  528 (987)
T PRK09782        454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-----TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATA  528 (987)
T ss_pred             hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHH
Confidence            33334444444444443 23  56677777777765     35666777666666542 222344455555566777777


Q ss_pred             HHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          157 ISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       157 ~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +..|++++.. .+..+++.+|.++.  ..|++++|+.+|+++++..  +......++.....    .+++++|+.+|+++
T Consensus       529 i~~~rka~~~~p~~~a~~~la~all--~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~----~Gr~~eAl~~~~~A  602 (987)
T PRK09782        529 LAAWQKISLHDMSNEDLLAAANTAQ--AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI----PGQPELALNDLTRS  602 (987)
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Confidence            7777766543 33445566666666  5666666666666666542  33333344433332    34666666666666


Q ss_pred             HHCC-CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          234 AEGG-YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       234 ~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      ++.. ++.+++++|.++.. .|   ++++|+.+|++++..  +++.++.++|.++...|++++|+..|++|++..|.++.
T Consensus       603 L~l~P~~~a~~~LA~~l~~-lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        603 LNIAPSANAYVARATIYRQ-RH---NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            6542 35566666666643 22   666666666666654  44666666666666666666666666666666544444


Q ss_pred             HHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          311 HVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       311 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ............++.++|+..+++..+..|
T Consensus       679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            433444444445666666666666655554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=1.8e-15  Score=153.05  Aligned_cols=245  Identities=15%  Similarity=-0.028  Sum_probs=198.5

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHH
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      .++..+|...+.......+   +......+|.++..    .+++++|+..|++++.. .+...++.+|.++...|++++|
T Consensus       489 ~~~~~eAi~a~~~Al~~~P---d~~~~L~lA~al~~----~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA  561 (987)
T PRK09782        489 DTLPGVALYAWLQAEQRQP---DAWQHRAVAYQAYQ----VEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAAR  561 (987)
T ss_pred             hCCcHHHHHHHHHHHHhCC---chHHHHHHHHHHHH----CCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHH
Confidence            3677778776666666654   34556667777666    48999999999998775 3456688999999999999999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +.+|+++++.  .+......++....  ..+++++|+.+|+++++.. ++.++.++|.++..    .+++++|+.+|+++
T Consensus       562 ~~~l~qAL~l~P~~~~l~~~La~~l~--~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~----lG~~deA~~~l~~A  635 (987)
T PRK09782        562 DRWLQQAEQRGLGDNALYWWLHAQRY--IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ----RHNVPAAVSDLRAA  635 (987)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence            9999999876  34455555555555  5699999999999998743 48999999999988    78999999999999


Q ss_pred             HHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          234 AEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       234 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      +..  +++.++.++|.++.. .|   ++++|+.+|+++++.  +++.+++++|.++...|++++|..+|+++++..+..+
T Consensus       636 L~l~Pd~~~a~~nLG~aL~~-~G---~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        636 LELEPNNSNYQAALGYALWD-SG---DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHhCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            987  688999999999965 33   999999999999886  6789999999999999999999999999999988777


Q ss_pred             HHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          310 DHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      ...............++.+.+-+++.....
T Consensus       712 ~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~  741 (987)
T PRK09782        712 LITPLTPEQNQQRFNFRRLHEEVGRRWTFS  741 (987)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            766666655556666777777555544443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=3.8e-16  Score=139.07  Aligned_cols=256  Identities=14%  Similarity=0.071  Sum_probs=199.1

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM  146 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~  146 (342)
                      ++++..++.+|++..|.+++..+.++-.....+.+...-++.|.+|   -+++.+|-.+-..|+..+  ++.++.+-|.+
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqg---gk~~~~aqqyad~aln~dryn~~a~~nkgn~  499 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQG---GKDFADAQQYADIALNIDRYNAAALTNKGNI  499 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhc---ccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence            6788888999999999988887776655444445555455555655   389999999999998864  89999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcCCCCCCC
Q 019340          147 YWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ--ASIAGHVRAQYQLALCLHRGRGVDFN  222 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~--a~~~~~~~a~~~lg~~~~~g~~~~~~  222 (342)
                      -+..||+++|.+.|+.|+..  ...+++|++|..+.  ..++.++|+.+|.+  ++-.++.++++.++.+|..    ..|
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e--~~~~ldeald~f~klh~il~nn~evl~qianiye~----led  573 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE--ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL----LED  573 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH--HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hhC
Confidence            99999999999999999976  45799999999999  89999999999998  4557899999999999987    779


Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHH
Q 019340          223 LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYL  298 (342)
Q Consensus       223 ~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~  298 (342)
                      ...|++||.++...  .++.....||.+|.+ .|   |..+|.+|+-..-.-  -+.+...+||..|....-.++|+.||
T Consensus       574 ~aqaie~~~q~~slip~dp~ilskl~dlydq-eg---dksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~  649 (840)
T KOG2003|consen  574 PAQAIELLMQANSLIPNDPAILSKLADLYDQ-EG---DKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF  649 (840)
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-cc---chhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999775  788888889998843 33   777777776665543  34556667777777777777777777


Q ss_pred             HHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          299 ELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       299 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      ++|.-..+....-.+-........+.+.+|..+++.+-.
T Consensus       650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            777766665555544444555556666667666666533

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.73  E-value=3.3e-15  Score=138.98  Aligned_cols=228  Identities=15%  Similarity=0.052  Sum_probs=187.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAG  171 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a  171 (342)
                      .....|.+|..+..    .+++++|+..|+++++.+  ++.+++.+|.++...|++++|+..+++++...+      ..+
T Consensus        34 ~~~~~y~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~  109 (389)
T PRK11788         34 RLSRDYFKGLNFLL----NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA  109 (389)
T ss_pred             hccHHHHHHHHHHh----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            45667778988877    489999999999999874  677899999999999999999999999987632      357


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-------HHHH
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-------VRAM  242 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-------~~a~  242 (342)
                      +..||.+|.  ..+++++|+.+|+++++.  .+..++..++.++..    .+++++|+..|++++..+.       ...+
T Consensus       110 ~~~La~~~~--~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  183 (389)
T PRK11788        110 LQELGQDYL--KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLGGDSLRVEIAHFY  183 (389)
T ss_pred             HHHHHHHHH--HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            889999999  889999999999999874  467889999999987    7799999999999987642       2245


Q ss_pred             HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-HHHHHHHHhh
Q 019340          243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-DHVKNVILQQ  319 (342)
Q Consensus       243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a-~~~~~~~~~~  319 (342)
                      ..+|.++..    .+++++|+.+|+++++.  .+..+++.+|.+|...|++++|..+|+++.+.++... .....+...+
T Consensus       184 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        184 CELAQQALA----RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHh----CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            678888754    23999999999999875  4678899999999999999999999999998865442 2223344445


Q ss_pred             cChhcHHHHHHHHHhhhcCCCC
Q 019340          320 LSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       320 ~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ...++.++|...+++..+..|.
T Consensus       260 ~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Confidence            5668999999999988776654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.72  E-value=7.9e-15  Score=131.05  Aligned_cols=205  Identities=15%  Similarity=0.049  Sum_probs=154.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      ..+..++.+|.+|..    .++.++|+..|.++++.  +++.+++.+|.++...|++++|+..|+++++.  ++..++.+
T Consensus        62 ~~a~~~~~~g~~~~~----~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189         62 ERAQLHYERGVLYDS----LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             hhHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            347889999999998    58999999999999997  48999999999999999999999999999865  77999999


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHcC
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-NTSLCYSFG  252 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~-~lg~~y~~g  252 (342)
                      +|.++.  ..+++++|+..|+++++.........+.. ++..    ..++++|+..|.+++...++..+. .+..++ .|
T Consensus       138 lg~~l~--~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~----~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~-lg  210 (296)
T PRK11189        138 RGIALY--YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES----KLDPKQAKENLKQRYEKLDKEQWGWNIVEFY-LG  210 (296)
T ss_pred             HHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc----cCCHHHHHHHHHHHHhhCCccccHHHHHHHH-cc
Confidence            999999  78999999999999988642222222222 2222    458999999998887664444332 233333 22


Q ss_pred             CCCcccHHHHHHHHHHHH----Hc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHH
Q 019340          253 EGLPLSHRQARKWMKRAA----DC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE-TAADHVKNVIL  317 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~----~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~  317 (342)
                      ..   +..+++..+..+.    +.  ...+++++||.++...|++++|+.+|++|++.++ ....+....+.
T Consensus       211 ~~---~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e  279 (296)
T PRK11189        211 KI---SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE  279 (296)
T ss_pred             CC---CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            21   2234444444322    22  3467999999999999999999999999999985 44444444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.1e-15  Score=142.00  Aligned_cols=240  Identities=16%  Similarity=0.081  Sum_probs=189.9

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---------------------
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---------------------  133 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---------------------  133 (342)
                      +...-+..+|...+...-+...+  -.+.+.++|..|..    ..++++|...|+.+=+                     
T Consensus       329 ~~s~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFE----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~  402 (638)
T KOG1126|consen  329 SLSQYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFE----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD  402 (638)
T ss_pred             HHHHHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence            34455666777666664444333  34888899999999    5899999999888721                     


Q ss_pred             ---------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          134 ---------------RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       134 ---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                                     ...|++|..+|.+|.-.+|.+.|+++|++|+..  ++.-|+..+|.=+.  ...++++|..+|++
T Consensus       403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~--~~ee~d~a~~~fr~  480 (638)
T KOG1126|consen  403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI--ATEEFDKAMKSFRK  480 (638)
T ss_pred             hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh--hhHHHHhHHHHHHh
Confidence                           146789999999999999999999999999866  56778888887777  67799999999999


Q ss_pred             HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      |+..  .+-.|||.||.+|..    ...++.|..+|++|++.+  +......+|.++..    .+..++|+..|++|+-.
T Consensus       481 Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  481 ALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHL  552 (638)
T ss_pred             hhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhc
Confidence            8875  478999999999987    678999999999999885  45567788888855    34899999999999876


Q ss_pred             --CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHH
Q 019340          273 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAML  330 (342)
Q Consensus       273 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~  330 (342)
                        .++-..+..|.++...+++++|+..++...+.-+.++-....+...+...+..+.|..
T Consensus       553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence              4577779999999999999999999999998887777665555555555566655554

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.71  E-value=6.2e-16  Score=121.99  Aligned_cols=170  Identities=21%  Similarity=0.272  Sum_probs=151.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhCCCHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEM-----DKKEAAISLYRQAAVLGDPAGQF  173 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~~~~a~~  173 (342)
                      ++++.+.||....   |+++|+++|...|+.-.+. +++.+.+.+|.-++.+     +++..|++.|+.+.+.+.+.+..
T Consensus        33 ~Pe~C~lLgdYlE---gi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~  109 (248)
T KOG4014|consen   33 RPESCQLLGDYLE---GIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACR  109 (248)
T ss_pred             CchHHHHHHHHHH---HHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHh
Confidence            7889999998653   4589999999999998775 5899999999888765     58999999999999999999999


Q ss_pred             HHHHHHHcCC-----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC----------CCC----------CCHHHHHH
Q 019340          174 NLGISYLQAQ-----PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR----------GVD----------FNLQEAAR  228 (342)
Q Consensus       174 ~Lg~~~~~g~-----~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~----------~~~----------~~~~~A~~  228 (342)
                      ++|.++..|.     ..|..+|.+|+.++.+.++.++.++|..+|..|.          |.+          +|+++|.+
T Consensus       110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q  189 (248)
T KOG4014|consen  110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ  189 (248)
T ss_pred             hhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence            9999998754     4468999999999999999999999999998761          334          89999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      +--+|.+.+++.+..|++++|..|.||++|.++|..+-.+|.+.
T Consensus       190 fa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  190 FAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=99.70  E-value=1.2e-14  Score=140.85  Aligned_cols=223  Identities=13%  Similarity=0.007  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHhC--
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE---------MDKKEAAISLYRQAAVL--  166 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~---------~~~~~~A~~~~~~a~~~--  166 (342)
                      ++..+|..|..+... ....+.++|+.+|++|++.+  ++.++..+|.+|..         .+++++|+..++++++.  
T Consensus       257 da~~~~lrg~~~~~~-~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP  335 (553)
T PRK12370        257 DSTMVYLRGKHELNQ-YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH  335 (553)
T ss_pred             HHHHHHHHhHHHHHc-cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence            344566667654431 33567889999999999974  78888889987753         24589999999999866  


Q ss_pred             CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Q 019340          167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAM  242 (342)
Q Consensus       167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~  242 (342)
                      +++.++..+|.++.  ..+++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+.+|+++++.+  ++.+.
T Consensus       336 ~~~~a~~~lg~~~~--~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        336 NNPQALGLLGLINT--IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             CCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCChhhH
Confidence            78999999999998  788999999999998774  588999999999987    678999999999999874  44555


Q ss_pred             HHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhh
Q 019340          243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQ  319 (342)
Q Consensus       243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~  319 (342)
                      +.++.++.. .|   ++++|+.++++++..   +++.++.++|.+|...|++++|..++++.....+........+...+
T Consensus       410 ~~~~~~~~~-~g---~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~  485 (553)
T PRK12370        410 ITKLWITYY-HT---GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY  485 (553)
T ss_pred             HHHHHHHHh-cc---CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            555554433 23   789999999999864   45778899999999999999999999987666444333333333333


Q ss_pred             cChhcHHHHHHHHHhh
Q 019340          320 LSATSRDRAMLVVDSW  335 (342)
Q Consensus       320 ~~~~~~~~a~~~~~~~  335 (342)
                      +..++  ++....+.+
T Consensus       486 ~~~g~--~a~~~l~~l  499 (553)
T PRK12370        486 CQNSE--RALPTIREF  499 (553)
T ss_pred             hccHH--HHHHHHHHH
Confidence            33332  444444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.70  E-value=1.8e-14  Score=123.24  Aligned_cols=191  Identities=17%  Similarity=0.170  Sum_probs=147.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..++.+|.+|..    .+++++|+..|+++++.  ++..++..+|.+|...|++++|+.+|+++++.  .++.+++++
T Consensus        30 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  105 (234)
T TIGR02521        30 AAKIRVQLALGYLE----QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            35677888888887    58899999999998875  46778888999999899999999999998865  667888888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      |.++.  ..+++++|+.+|++++..    .....++.+|.++..    .+++++|..+|.+++..  +++.++..+|.++
T Consensus       106 ~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       106 GTFLC--QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHH--HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            88888  788899999999988763    345677788888876    66788888888888765  3566777777777


Q ss_pred             HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .. .   +++++|..++++++..  .++..+..++.++...|+.++|..+.+.+...
T Consensus       180 ~~-~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       180 YL-R---GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HH-c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            54 2   2788888888887664  34566667777777778888887777765543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=7.3e-16  Score=143.16  Aligned_cols=197  Identities=15%  Similarity=0.085  Sum_probs=175.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .++++-.+|.||..    .+|.+.|++.|++|++++  .+.++..+|.-+....++|+|..+|++|+..  .+-.|||.|
T Consensus       420 sPesWca~GNcfSL----Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  420 SPESWCALGNCFSL----QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CcHHHHHhcchhhh----hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            45567778999988    699999999999999985  7888999999999999999999999999865  788999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF  251 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~  251 (342)
                      |.+|.  ..++++.|.-+|++|++-  .+......+|.++..    .+..++|+.+|++|+..  .++...+..|.++. 
T Consensus       496 G~vy~--Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-  568 (638)
T KOG1126|consen  496 GTVYL--KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-  568 (638)
T ss_pred             hhhee--ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH-
Confidence            99999  899999999999999885  477778899999988    78999999999999987  47888999999994 


Q ss_pred             CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      +.+   ++++|+.-+++.-+.  .+...++.||.+|...|+.+.|+..|.-|.++++.-+.
T Consensus       569 ~~~---~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  569 SLG---RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhc---chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            444   999999999997665  66778899999999999999999999999999876655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2e-14  Score=128.46  Aligned_cols=190  Identities=17%  Similarity=0.093  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHH-------------------------------HHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STL-------------------------------AMVDA  143 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~-------------------------------a~~~l  143 (342)
                      ........|.++..    ..|+++|+..|+.....+     +-+                               .+.-+
T Consensus       261 ~~~i~~~~A~~~y~----~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI  336 (559)
T KOG1155|consen  261 SMYIKTQIAAASYN----QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII  336 (559)
T ss_pred             cHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence            34555566777777    589999999999987642     211                               12223


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGV  219 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~  219 (342)
                      |.-|.-.++.++|+.+|++|+.+  +...+|..+|.=|.  +.++...|+..|++|++.+  +-+|||.||++|..    
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv--EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei----  410 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV--EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI----  410 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH--HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH----
Confidence            44444457899999999999987  56789999999999  9999999999999999865  78999999999986    


Q ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHhhhcCCHHHHH
Q 019340          220 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG--KAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      .+-..=|+-+|++|...  .|...|..||.||.. .   .+.++|+++|++|+..++.  .+++.||.+|.+.++.++|.
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l---~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEK-L---NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-h---ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence            67788999999999886  789999999999965 3   3999999999999998876  88999999999999999999


Q ss_pred             HHHHHHHH
Q 019340          296 VYLELATR  303 (342)
Q Consensus       296 ~~~~~a~~  303 (342)
                      .+|++-++
T Consensus       487 ~~yek~v~  494 (559)
T KOG1155|consen  487 QYYEKYVE  494 (559)
T ss_pred             HHHHHHHH
Confidence            99999876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.69  E-value=1.8e-14  Score=123.17  Aligned_cols=195  Identities=19%  Similarity=0.141  Sum_probs=163.1

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      .+.+++++|.++...|++++|+.+++++++.  +++.++..+|.++.  ..+++++|+.+|+++++.  .++.+++++|.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ--QLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            4678899999999999999999999999865  67889999999999  889999999999999875  57889999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHh
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL  285 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  285 (342)
                      ++..    .+++++|+.+|.+++..    .....++++|.+|.. .|   ++++|..+|.+++..  +++.++..+|.++
T Consensus       108 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       108 FLCQ----QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AG---DFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHH----cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            9987    77999999999999875    346688999999965 33   999999999999886  4578899999999


Q ss_pred             hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          286 FTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       286 ~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ...|++++|..+++++++..+.+..............++.+++....+.+....|
T Consensus       180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            9999999999999999987543333333334444556788888888777766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.68  E-value=3.3e-14  Score=137.87  Aligned_cols=213  Identities=15%  Similarity=0.045  Sum_probs=170.7

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHc----CC-CCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH----GR-GVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~----g~-g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~  149 (342)
                      ..+++.+|...+.+..+..++  ++.++..||.+|..    |. ...+++++|+..+++|++.  +++.++..+|.++..
T Consensus       273 ~~~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~  350 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI  350 (553)
T ss_pred             CHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            345666787777777766554  78888899988763    11 1346789999999999997  489999999999999


Q ss_pred             CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHH
Q 019340          150 MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQE  225 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~  225 (342)
                      .|++++|+.+|+++++.  +++.+++++|.++.  ..|++++|+.+|+++++.  .++.+.+.++.++..    .+++++
T Consensus       351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~--~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~----~g~~ee  424 (553)
T PRK12370        351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLF--MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY----HTGIDD  424 (553)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----ccCHHH
Confidence            99999999999999866  78999999999999  889999999999999885  466666666655554    457899


Q ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340          226 AARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       226 A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                      |+.++++++..   +++.++.++|.+|.. .|   ++++|..++++....  .+..+...|+..|...|+  +|...++.
T Consensus       425 A~~~~~~~l~~~~p~~~~~~~~la~~l~~-~G---~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~  498 (553)
T PRK12370        425 AIRLGDELRSQHLQDNPILLSMQVMFLSL-KG---KHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE  498 (553)
T ss_pred             HHHHHHHHHHhccccCHHHHHHHHHHHHh-CC---CHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence            99999999864   467889999999954 44   999999999987654  445677888888888884  67776666


Q ss_pred             HHH
Q 019340          301 ATR  303 (342)
Q Consensus       301 a~~  303 (342)
                      .++
T Consensus       499 ll~  501 (553)
T PRK12370        499 FLE  501 (553)
T ss_pred             HHH
Confidence            554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=6.7e-16  Score=137.19  Aligned_cols=254  Identities=17%  Similarity=0.059  Sum_probs=107.3

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM  146 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~  146 (342)
                      +.-+..++..+++.+|...+........+..++..+..+|.+...    .++++.|+..|++.+..+  ++.....++.+
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~----~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l   87 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWS----LGDYDEAIEAYEKLLASDKANPQDYERLIQL   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence            344556778899999987775555454344577777888988887    489999999999998875  55566677777


Q ss_pred             HhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCC
Q 019340          147 YWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF  221 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~  221 (342)
                       ...+++++|+.+++++.+. +++..+..+..++.  ..++++++...+.++...    .++..+..+|.++..    .+
T Consensus        88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G  160 (280)
T PF13429_consen   88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY--RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LG  160 (280)
T ss_dssp             -------------------------------H-HH--HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CC
T ss_pred             -cccccccccccccccccccccccchhhHHHHHHH--HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cC
Confidence             6889999999999998765 66777777777777  778999999999986653    477889999999998    77


Q ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340          222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY  297 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~  297 (342)
                      +.++|+.+|++|++.  +++.+...+++++.. .|   +.+++...++.....  .++..+..+|.+|...|++++|+.+
T Consensus       161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~  236 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY  236 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence            899999999999986  578889999999853 33   888877777776554  5566778999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       298 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      |++++...+.+..............++.++|.++.++...
T Consensus       237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccc
Confidence            9999999888888888888888888999999998887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.65  E-value=8.5e-14  Score=134.19  Aligned_cols=249  Identities=11%  Similarity=0.019  Sum_probs=202.4

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCC
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDK  152 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~  152 (342)
                      ...+..+..+..+.+..-.  .+|.++..|+..|..    ++|++.+..+..-++...     -+++.|++|+.|...||
T Consensus       249 ~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  249 SDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             hHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            3445566666666665543  488889999988888    799999999999998753     35678999999999999


Q ss_pred             HHHHHHHHHHHHhC--CC-HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340          153 KEAAISLYRQAAVL--GD-PAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAA  227 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~-~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~  227 (342)
                      +++|..+|.+++..  ++ .-+++.||.+|.  ..++++.++.+|++..+  +++.+....||.+|..-.......++|.
T Consensus       323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i--~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~  400 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYI--KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS  400 (1018)
T ss_pred             HHHHHHHHHHHHccCCCCccccccchhHHHH--HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence            99999999999866  33 668899999999  88999999999999887  5789999999999986322233568999


Q ss_pred             HHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhhcCCHHHHHHHH
Q 019340          228 RWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GHGKAQLEHGLGLFTEGEMMKAVVYL  298 (342)
Q Consensus       228 ~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~~~~~~~A~~~~  298 (342)
                      .+..++.+.  .+..+|..++.+|..     .|...++.+|.+|++.       -+++.++|+|..++..|++++|...|
T Consensus       401 ~~l~K~~~~~~~d~~a~l~laql~e~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f  475 (1018)
T KOG2002|consen  401 NVLGKVLEQTPVDSEAWLELAQLLEQ-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF  475 (1018)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence            999999887  588999999999964     3777779999999752       35788999999999999999999999


Q ss_pred             HHHHHc----Cc-HH-------HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          299 ELATRA----GE-TA-------ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       299 ~~a~~~----~~-~~-------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ..|...    .+ ..       -.+|++.+...+  .+.+.|.+.++.+++.+|.
T Consensus       476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l--~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL--HDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             HHHhhhhhhhcCccccccchhHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCch
Confidence            999765    22 22       267777777766  6677799999999999885

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.65  E-value=3.3e-13  Score=135.62  Aligned_cols=181  Identities=16%  Similarity=0.048  Sum_probs=111.7

Q ss_pred             CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHhcCCCCCC
Q 019340          151 DKKEAAISLYRQAAVLG---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H----VRAQYQLALCLHRGRGVDF  221 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~  221 (342)
                      +++++|+..|+++++.+   ...+...+|.+|.  ..+++++|+.+|+++++..  +    ......|+.++..    .+
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl--~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~----~g  324 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL--KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE----SE  324 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh----cc
Confidence            34444444444444332   1223333455555  4555556666665554432  1    2334444444444    45


Q ss_pred             CHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          222 NLQEAARWYLRAAEGGY-----------------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG  282 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~~~-----------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  282 (342)
                      ++++|+.+++++.....                 ..++..++.++...    +++++|+..+++++..  +++..++.+|
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~----g~~~eA~~~l~~al~~~P~n~~l~~~lA  400 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS----NDLPQAEMRARELAYNAPGNQGLRIDYA  400 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56666666666655321                 23455666666432    2778888888877664  5677788888


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          283 LGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .++...|++++|+..++++++..|.+....+......+..++.++|+.+++++.+..|.
T Consensus       401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd  459 (765)
T PRK10049        401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ  459 (765)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence            88888888888888888888887776666666677777778888888888888777664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.63  E-value=5.1e-13  Score=134.26  Aligned_cols=251  Identities=12%  Similarity=-0.018  Sum_probs=184.3

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~  153 (342)
                      .-.|+..+|...+......  +...+.++..+|.++..    .+++++|+.+|+++++.  +++.++..++.++...|++
T Consensus        26 ~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~   99 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRN----LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY   99 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            4567778887555444431  34467778888988888    58899999999998876  4788888999999999999


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCC---------
Q 019340          154 EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVD---------  220 (342)
Q Consensus       154 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~---------  220 (342)
                      ++|+..++++++.  +++. ++.+|.++.  ..+++++|+..|+++++  ++++.++..+|.++..++...         
T Consensus       100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~--~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        100 DEALVKAKQLVSGAPDKAN-LLALAYVYK--RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            9999999998765  6777 888898888  88899999999999877  467888888888876432110         


Q ss_pred             ------------------------------CCH---HHHHHHHHHHHHC--CCH-------HHHHH-HHHHHHcCCCCcc
Q 019340          221 ------------------------------FNL---QEAARWYLRAAEG--GYV-------RAMYN-TSLCYSFGEGLPL  257 (342)
Q Consensus       221 ------------------------------~~~---~~A~~~~~~A~~~--~~~-------~a~~~-lg~~y~~g~g~~~  257 (342)
                                                    ..+   ++|+..|++++..  .++       .+... ++.++..     +
T Consensus       177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-----g  251 (765)
T PRK10049        177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-----D  251 (765)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-----h
Confidence                                          011   4566666666543  111       12222 4555532     3


Q ss_pred             cHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH----HHHHHHHHHhhcChhcHHHHHH
Q 019340          258 SHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA----ADHVKNVILQQLSATSRDRAML  330 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~----a~~~~~~~~~~~~~~~~~~a~~  330 (342)
                      ++++|+..|++++..+   +..+...+|.+|...|++++|+.+|++++...+..    ......++...+..++.++|..
T Consensus       252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~  331 (765)
T PRK10049        252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT  331 (765)
T ss_pred             hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            8999999999998875   34566778999999999999999999998876433    1223344555678899999999


Q ss_pred             HHHhhhcCCC
Q 019340          331 VVDSWRAMPS  340 (342)
Q Consensus       331 ~~~~~~~~~~  340 (342)
                      .++++....|
T Consensus       332 ~l~~~~~~~P  341 (765)
T PRK10049        332 VTAHTINNSP  341 (765)
T ss_pred             HHHHHhhcCC
Confidence            9999887755

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.61  E-value=1.8e-13  Score=112.50  Aligned_cols=194  Identities=20%  Similarity=0.160  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +.+...||.-|..+    +|+..|..-+++|++.+  +..++.-++.+|...|+.+.|.+.|++|+..  ++.+.+.|.|
T Consensus        35 a~arlqLal~YL~~----gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          35 AKARLQLALGYLQQ----GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            34555566666663    66666666666666643  5556666666666666666666666666544  5556666666


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG  252 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g  252 (342)
                      ..+-  ..|.+++|..+|++|+..    ..+..+-|+|.|...    .++.+.|.++|+++++.+               
T Consensus       111 ~FLC--~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~d---------------  169 (250)
T COG3063         111 AFLC--AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELD---------------  169 (250)
T ss_pred             HHHH--hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhC---------------
Confidence            5555  555666666666666553    234555555555544    334444555555444431               


Q ss_pred             CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340          253 EGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVV  332 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~  332 (342)
                                         .+.+.+...++..++..|++..|..++++-...+...+..++-.+...-..++.+.+.+.-
T Consensus       170 -------------------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~  230 (250)
T COG3063         170 -------------------PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQ  230 (250)
T ss_pred             -------------------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence                               1234444445555555555555555555544444444444333333333344444444444


Q ss_pred             HhhhcC
Q 019340          333 DSWRAM  338 (342)
Q Consensus       333 ~~~~~~  338 (342)
                      .++.+.
T Consensus       231 ~qL~r~  236 (250)
T COG3063         231 AQLQRL  236 (250)
T ss_pred             HHHHHh
Confidence            444333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.2e-13  Score=126.36  Aligned_cols=205  Identities=17%  Similarity=0.147  Sum_probs=171.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..++.+|..|.-    -+...+|..+|.+|...+  ...+|...|..|...++.++|+..|..|...  |.-.....|
T Consensus       311 ~a~sW~aVg~YYl~----i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl  386 (611)
T KOG1173|consen  311 KALSWFAVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL  386 (611)
T ss_pred             CCcchhhHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence            45667778887777    478999999999998875  7789999999999999999999999999876  778888889


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYN  244 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~-----~~~a~~~  244 (342)
                      |.=|.  ..++++-|.++|..|..  +.+|-..+.+|.+.+.    .+.+.+|..||++++..    +     -...+.|
T Consensus       387 gmey~--~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N  460 (611)
T KOG1173|consen  387 GMEYM--RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN  460 (611)
T ss_pred             HHHHH--HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence            99888  88899999999999755  6799999999999886    67899999999999842    1     2334889


Q ss_pred             HHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH--HHHHHHHHHh
Q 019340          245 TSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA--ADHVKNVILQ  318 (342)
Q Consensus       245 lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~--a~~~~~~~~~  318 (342)
                      ||.+|.+    .+.+.+|+.+|++++..  .++..+..+|.+|.-.|++++|+.+|.+|+.+.+.+  +...++....
T Consensus       461 LGH~~Rk----l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  461 LGHAYRK----LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHH----HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999965    34899999999999886  668889999999999999999999999999887655  4444554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.59  E-value=5.8e-13  Score=119.06  Aligned_cols=209  Identities=15%  Similarity=0.009  Sum_probs=154.7

Q ss_pred             CHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHH
Q 019340          120 NLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAV  191 (342)
Q Consensus       120 ~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~  191 (342)
                      ..+.++..+.+.+..      +.+..++.+|.+|...|+.++|+..|+++++.  +++.+++++|.++.  ..+++++|+
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~--~~g~~~~A~  118 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT--QAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCCCHHHHH
Confidence            456677778887753      24677999999999999999999999999866  78999999999999  899999999


Q ss_pred             HHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340          192 KLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA  269 (342)
Q Consensus       192 ~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  269 (342)
                      ..|+++++  +++..+++++|.++..    .+++++|+..|++++.....+.+..+.......   ..++++|+..|.++
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~  191 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES---KLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence            99999977  4689999999999987    679999999999999875433333222222122   23899999999888


Q ss_pred             HHcCCHHHHHHHHHHhhhcCCHH--HHHHHHHHH----HHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          270 ADCGHGKAQLEHGLGLFTEGEMM--KAVVYLELA----TRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       270 ~~~~~~~a~~~Lg~~~~~~~~~~--~A~~~~~~a----~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +...++..+. .+.++...|+..  +++..+..+    .+.+  ..++..+++.+..  ..++.++|+..+++....+|
T Consensus       192 ~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~--~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        192 YEKLDKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYL--SLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             HhhCCccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCC
Confidence            7654444332 345555555543  333333332    2333  3355666666655  55889999999999888775

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.59  E-value=2e-13  Score=125.24  Aligned_cols=242  Identities=12%  Similarity=0.039  Sum_probs=173.8

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM  146 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~  146 (342)
                      ++....++..|++.+|...+....+.-+.  +++++..||.+...    ..+-..|+..+++++++  ++..++..||..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaE----NE~E~~ai~AL~rcl~LdP~NleaLmaLAVS  362 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAE----NENEQNAISALRRCLELDPTNLEALMALAVS  362 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhh----ccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            44555566777777777666666655443  77777777777776    35666777777777776  477777777777


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-C------CccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhc
Q 019340          147 YWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-A------QPANAEEAVKLLYQASIA----GHVRAQYQLALCLHR  215 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g------~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~  215 (342)
                      |...|.-.+|++++.+-+....+..+.-.+..-.. +      .......-.++|..++..    .+++++..||.+|..
T Consensus       363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l  442 (579)
T KOG1125|consen  363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL  442 (579)
T ss_pred             HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence            77777777777777777655444433221100000 0      011233445555555442    489999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH
Q 019340          216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM  291 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~  291 (342)
                          .+++++|+.+|+.|+..  .+..-|..||-.+..|.    ...+|+..|++|++.  +...+.||||..+.+.|.|
T Consensus       443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~----~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN----RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc----ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence                77999999999999986  57778999999998877    899999999999987  7789999999999999999


Q ss_pred             HHHHHHHHHHHHcCc------------HHHHHHHHHHHhhcChhc
Q 019340          292 MKAVVYLELATRAGE------------TAADHVKNVILQQLSATS  324 (342)
Q Consensus       292 ~~A~~~~~~a~~~~~------------~~a~~~~~~~~~~~~~~~  324 (342)
                      ++|..+|-.|+....            ...+..+...+..+...|
T Consensus       515 kEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  515 KEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            999999999987521            245566666666555444

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.57  E-value=2e-13  Score=107.91  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=136.6

Q ss_pred             hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC-------
Q 019340           79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR-GVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM-------  150 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~-g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~-------  150 (342)
                      .|+++|..++.   ....+.+.+.+.|.+|..+..|. |..+++..|++.|+.|.+.+.+.+..++|.+++.+       
T Consensus        49 knF~~A~kv~K---~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~d  125 (248)
T KOG4014|consen   49 KNFQAAVKVFK---KNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKAD  125 (248)
T ss_pred             HHHHHHHHHHH---hcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCC
Confidence            45666653332   23344678999999999999988 78999999999999999999999999999999886       


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC----------------------ccCHHHHHHHHHHHHHcCCHHHHHH
Q 019340          151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ----------------------PANAEEAVKLLYQASIAGHVRAQYQ  208 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~----------------------~~~~~~A~~~~~~a~~~~~~~a~~~  208 (342)
                      -|.++|..++.++.+.++..+.++|...|+.|.                      .+|.++|+++-.++.+++++.+..|
T Consensus       126 pd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN  205 (248)
T KOG4014|consen  126 PDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACAN  205 (248)
T ss_pred             CCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhh
Confidence            259999999999999999999999999999761                      2688999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      +..+|..|.|+++|.++|..+-.+|.+.
T Consensus       206 ~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  206 VSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            9999999999999999999999998753

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=1.3e-12  Score=117.66  Aligned_cols=238  Identities=14%  Similarity=0.111  Sum_probs=190.1

Q ss_pred             HhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC
Q 019340           73 AASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM  150 (342)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~  150 (342)
                      .-.|-.|+...+...+...++.-+.++.  .+..+|.+|.+    ..+.++....|.+|.+++  +++.+++.|.+++-.
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d----~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL  407 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYAD----ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL  407 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhh----hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH
Confidence            3356778888888777766666554333  36778999998    689999999999999985  899999999999999


Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340          151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      +++++|+.=|++++.+  .+.-++..++.+.+  ....+.++...|+.+..  +..++++...|.++.+    .+++++|
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y--r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A  481 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALY--RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKA  481 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHH
Confidence            9999999999999877  55667777887777  77899999999999988  4789999999999988    7799999


Q ss_pred             HHHHHHHHHCCCH--------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHH
Q 019340          227 ARWYLRAAEGGYV--------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVV  296 (342)
Q Consensus       227 ~~~~~~A~~~~~~--------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~  296 (342)
                      ++.|.+|+++...        .-+..-|.+..+   -.+|+.+|...+++|++.++  ..++..||++..+.|+.++|++
T Consensus       482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q---wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie  558 (606)
T KOG0547|consen  482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ---WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE  558 (606)
T ss_pred             HHHHHHHHhhccccccccccchhhhhhhHhhhc---hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999987432        233344444433   24699999999999999865  6788999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHHHhhcChhcH
Q 019340          297 YLELATRAGETAADHVKNVILQQLSATSR  325 (342)
Q Consensus       297 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~  325 (342)
                      +|++++.+............+..-...+.
T Consensus       559 lFEksa~lArt~~E~~~a~s~aeAAraq~  587 (606)
T KOG0547|consen  559 LFEKSAQLARTESEMVHAYSLAEAARAQI  587 (606)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhH
Confidence            99999988665555444444433333333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.56  E-value=4.5e-12  Score=122.52  Aligned_cols=260  Identities=12%  Similarity=0.040  Sum_probs=190.6

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCc-CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRP-LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAM  140 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~  140 (342)
                      |.....-+...|-.+++..+..+....++.... .-.+.++|++|.+|..    .||+++|..+|.+++..+   ..-.+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha----~Gd~ekA~~yY~~s~k~~~d~~~l~~  345 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA----QGDFEKAFKYYMESLKADNDNFVLPL  345 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHccCCCCccccc
Confidence            433333444467889999988877766665422 2246789999999999    699999999999999863   36788


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC--CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQA--QPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g--~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      +.||.+|...|+++.|+.+|++..+.  ++.+.+.-||.+|...  .....++|..+..++.+.  .+.+++..|+.+|.
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE  425 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            99999999999999999999999865  8899999999999832  123568888999988875  47889999999998


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCH-------
Q 019340          215 RGRGVDFNLQEAARWYLRAAEG-------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHG-------  275 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~-------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~-------  275 (342)
                      .     .|...++.+|.+|++.       -.+...+|+|..++.    .+++.+|...|+.|...     +.-       
T Consensus       426 ~-----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~----~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l  496 (1018)
T KOG2002|consen  426 Q-----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR----LGNIEKALEHFKSALGKLLEVANKDEGKSTNL  496 (1018)
T ss_pred             h-----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH----hcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence            4     5677778888888752       256778888888754    33888888888888653     111       


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      .-.|||+.++...++++.|...|+..+..  |+.++...++.+.  .......+|....+..+...
T Consensus       497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma--~~k~~~~ea~~~lk~~l~~d  560 (1018)
T KOG2002|consen  497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA--RDKNNLYEASLLLKDALNID  560 (1018)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH--HhccCcHHHHHHHHHHHhcc
Confidence            23688888888888888888888888776  4455554444222  23344555555555554433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=3.4e-12  Score=114.14  Aligned_cols=196  Identities=17%  Similarity=0.115  Sum_probs=162.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHH--HHhCCCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQ--AAVLGDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~--a~~~~~~~a~~~L  175 (342)
                      ++.++.+-|.+-..    .+|+++|.++|+.|+..+  ..++++++|..+...|+.++|+.+|-+  ++-.++.+.++.+
T Consensus       489 n~~a~~nkgn~~f~----ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  489 NAAALTNKGNIAFA----NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             CHHHhhcCCceeee----cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45566666655444    589999999999999864  679999999999999999999999988  5677999999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF  251 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~  251 (342)
                      +.+|.  ...++.+|++||.++..  +.+|..+..||.+|.+    .+|-..|++++-..-.-  -+...--+||..|..
T Consensus       565 aniye--~led~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyid  638 (840)
T KOG2003|consen  565 ANIYE--LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID  638 (840)
T ss_pred             HHHHH--HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence            99999  88899999999999765  6899999999999987    77888888887665543  356667788888865


Q ss_pred             CCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                          .+=.++|+.||++|.-..  .......++.++...|+|.+|+..|+..-+.-+.+.
T Consensus       639 ----tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  639 ----TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             ----hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence                346889999999997653  355567889999999999999999999887755443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=8.2e-12  Score=114.47  Aligned_cols=262  Identities=13%  Similarity=0.047  Sum_probs=209.5

Q ss_pred             CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 019340           63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM  140 (342)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  140 (342)
                      ..+..+..++..+|...++.+-..++...++..+-.. ...-..+|-++..|     +.-+=+.+=.+.++.  ..+..|
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~-~~~~~~ia~l~el~-----~~n~Lf~lsh~LV~~yP~~a~sW  315 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL-PCLPLHIACLYELG-----KSNKLFLLSHKLVDLYPSKALSW  315 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc-chHHHHHHHHHHhc-----ccchHHHHHHHHHHhCCCCCcch
Confidence            3456677888889999999999888888887765433 34445678666664     333333333333443  467889


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG  216 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g  216 (342)
                      +.+|.-|...+++++|..+|-|+...  ....||..+|..+.  ..+..++|+.+|.+|.+.  |...-...+|.=|.. 
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa--~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-  392 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA--GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-  392 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh--hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-
Confidence            99999999999999999999998765  56788988898888  889999999999999884  666667778888876 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-----HHHHHHHHHHh
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-----GKAQLEHGLGL  285 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~  285 (342)
                         .++.+.|.++|..|...  .++.....+|.+...    .+.+.+|..||+.++..    .+     .+-+.|||.+|
T Consensus       393 ---t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  393 ---TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             ---hccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence               78999999999999876  689999999999854    33999999999999842    11     23368999999


Q ss_pred             hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          286 FTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       286 ~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ...+.+++|+.+|++++...+.++.+.-+..+.+...+..+.|++.+.+-+.+.|
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            9999999999999999999988888888888888888999999997776655544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.50  E-value=1.7e-11  Score=100.95  Aligned_cols=160  Identities=14%  Similarity=0.049  Sum_probs=137.4

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD  142 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  142 (342)
                      ....+..+...+..|++..|...+.+.++..+.  ...++..++.+|..    .++.+.|.+.|++|+.+  ++.+.+.|
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~----~Ge~~~A~e~YrkAlsl~p~~GdVLNN  108 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQK----LGENDLADESYRKALSLAPNNGDVLNN  108 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHH----cCChhhHHHHHHHHHhcCCCccchhhh
Confidence            445566777788999999999999888877655  78899999999999    68999999999999997  58999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG  216 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g  216 (342)
                      .|..++..|++++|..+|++|+..    ..+..+-|+|.|-.  ..|+++.|..+|+++++.  ..+.+...++..... 
T Consensus       109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal--~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~-  185 (250)
T COG3063         109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL--KAGQFDQAEEYLKRALELDPQFPPALLELARLHYK-  185 (250)
T ss_pred             hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh--hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh-
Confidence            999999999999999999999976    45789999999999  899999999999999885  578888888888776 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC
Q 019340          217 RGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~  236 (342)
                         .+++..|..++++-...
T Consensus       186 ---~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         186 ---AGDYAPARLYLERYQQR  202 (250)
T ss_pred             ---cccchHHHHHHHHHHhc
Confidence               55677777776665444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.48  E-value=5.6e-13  Score=118.41  Aligned_cols=210  Identities=16%  Similarity=0.071  Sum_probs=106.3

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA  155 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~  155 (342)
                      ..+++..|...+...++....  .+..+..++.++.     .+++++|+.+++++.+. +++..+..+..++...+++++
T Consensus        56 ~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  128 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLASDKA--NPQDYERLIQLLQ-----DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE  128 (280)
T ss_dssp             ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred             ccccccccccccccccccccc--ccccccccccccc-----cccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence            457777887777766655433  4455555666643     47999999999998875 466777778888899999999


Q ss_pred             HHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340          156 AISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW  229 (342)
Q Consensus       156 A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~  229 (342)
                      +...++++...    .++..++.+|.++.  ..|+.++|+.+|+++++  ++++.+...++.++..    .++.+++...
T Consensus       129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~--~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~----~~~~~~~~~~  202 (280)
T PF13429_consen  129 AEELLEKLEELPAAPDSARFWLALAEIYE--QLGDPDKALRDYRKALELDPDDPDARNALAWLLID----MGDYDEAREA  202 (280)
T ss_dssp             HHHHHHHHHH-T---T-HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCChHHHHHH
Confidence            99999997643    57888999999999  89999999999999987  5689999999999976    6678876666


Q ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          230 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       230 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      +......  .++..+..+|.+|..    .+++++|+.+|+++...  +++..+..+|.++...|+.++|..+++++.+
T Consensus       203 l~~~~~~~~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  203 LKRLLKAAPDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHH-HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHhcc----cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6665543  466778889999964    33999999999999884  6799999999999999999999999999875

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.46  E-value=2.1e-11  Score=114.24  Aligned_cols=212  Identities=19%  Similarity=0.154  Sum_probs=114.7

Q ss_pred             CChhHHhhHHHHHHHHHHhCcC-----CC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----C--C---HHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPL-----RE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G--S---TLAM  140 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~-----~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~--~---~~a~  140 (342)
                      ..|++..|..+|+..++...+.     .. +..+..+|.+|..    .+++++|+..|++|+..     |  +   +..+
T Consensus       211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~----~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l  286 (508)
T KOG1840|consen  211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS----LGKYDEAVNLYEEALTIREEVFGEDHPAVAATL  286 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5566666666666655553211     11 1233336666666    46666666666666653     1  2   2345


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CC-
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GH-  202 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~-  202 (342)
                      .+||.+|...|++++|..++++|++.       .++   ..+.+++.++.  ..+++++|+.+|+++++.       .+ 
T Consensus       287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~--~~~~~Eea~~l~q~al~i~~~~~g~~~~  364 (508)
T KOG1840|consen  287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ--SMNEYEEAKKLLQKALKIYLDAPGEDNV  364 (508)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHHhhccccch
Confidence            56666666666666666666666532       222   23444455544  556666666666665441       12 


Q ss_pred             --HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          203 --VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       203 --~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                        +....+||.+|..    .+.+++|.++|++|+..          +.....++||..|.+..    .+.+|.+.|..+.
T Consensus       365 ~~a~~~~nl~~l~~~----~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k----~~~~a~~l~~~~~  436 (508)
T KOG1840|consen  365 NLAKIYANLAELYLK----MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK----KYEEAEQLFEEAK  436 (508)
T ss_pred             HHHHHHHHHHHHHHH----hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc----ccchHHHHHHHHH
Confidence              3345566666665    55666666666666642          12345556666664432    3444444444433


Q ss_pred             H------cCC---HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          271 D------CGH---GKAQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       271 ~------~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      .      .++   ...+.||+.+|..+|++++|..+..+++
T Consensus       437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            2      222   2345566666666666666666666665

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.44  E-value=2.1e-10  Score=110.43  Aligned_cols=251  Identities=14%  Similarity=0.092  Sum_probs=181.9

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      .++-.+-.+|..|++.+|..++...++..+.  ++.+++.||.+|.+    .||.++++.++..|+.+  ++.+-|..++
T Consensus       141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEq----rGd~eK~l~~~llAAHL~p~d~e~W~~la  214 (895)
T KOG2076|consen  141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQ----RGDIEKALNFWLLAAHLNPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            3455666688999999999999999998766  88999999999999    58999999999999987  4889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH-H------HHHHHHHHHhc
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV-R------AQYQLALCLHR  215 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~-~------a~~~lg~~~~~  215 (342)
                      ......|++++|+-+|.+|+..  .+..-.+.-..+|.  ..|+...|+..|++.+....+ +      .....+..+..
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~--~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ--KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH--HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999977  44566667777777  777888888888877654320 0      00010111110


Q ss_pred             CCCCCCCHHHHHHHHHHHH-------------------------------------------------------------
Q 019340          216 GRGVDFNLQEAARWYLRAA-------------------------------------------------------------  234 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~-------------------------------------------------------------  234 (342)
                          ..+-+.|++.+..++                                                             
T Consensus       293 ----~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~  368 (895)
T KOG2076|consen  293 ----HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC  368 (895)
T ss_pred             ----hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence                001111111111111                                                             


Q ss_pred             ------------------------------------H-----CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340          235 ------------------------------------E-----GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-  272 (342)
Q Consensus       235 ------------------------------------~-----~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  272 (342)
                                                          +     ..+.+-++.++..|.. .|   .+++|+.+|...... 
T Consensus       369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~-~~---~~~~Al~~l~~i~~~~  444 (895)
T KOG2076|consen  369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN-IG---KYKEALRLLSPITNRE  444 (895)
T ss_pred             cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh-cc---cHHHHHHHHHHHhcCc
Confidence                                                0     0134455666777744 33   889999999988875 


Q ss_pred             --CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          273 --GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       273 --~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                        ++...|+.+|.+|...|.+++|+.+|++++..  ++.|+...++.++..+  +..++|.+.+.++
T Consensus       445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~--g~~EkalEtL~~~  509 (895)
T KOG2076|consen  445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL--GNHEKALETLEQI  509 (895)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHhcc
Confidence              44567899999999999999999999999987  4567777777777665  6677777766553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.44  E-value=1e-10  Score=116.66  Aligned_cols=264  Identities=9%  Similarity=-0.025  Sum_probs=184.8

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD  142 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~  142 (342)
                      +.....++...+..|++..|...+.+..+..+.  ++.+.+.+..++..    .++.++|+.++++++...  +......
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~----~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGW----AGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHH----cCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            556677888889999999999888888877655  43333366666655    489999999999999754  4455555


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVD  220 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~  220 (342)
                      +|.+|...|++++|++.|+++++.  ++++++..|+.+|.  ..++.++|+..++++.........+ ++..|....  .
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~--~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~  182 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA--DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--T  182 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--c
Confidence            688999999999999999999866  77888887777777  8899999999999987764322222 555554322  4


Q ss_pred             CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC--------------------------------------------
Q 019340          221 FNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEG--------------------------------------------  254 (342)
Q Consensus       221 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g--------------------------------------------  254 (342)
                      .+..+|+..|+++++..  +.+....+..+... .|                                            
T Consensus       183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~-~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~  261 (822)
T PRK14574        183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQR-NRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET  261 (822)
T ss_pred             chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence            45556999999887642  22222222211110 00                                            


Q ss_pred             ------------------------------------------CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcC
Q 019340          255 ------------------------------------------LPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEG  289 (342)
Q Consensus       255 ------------------------------------------~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~  289 (342)
                                                                .-+++.+++.-|+..-..+   +.-+...+|..|...+
T Consensus       262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~  341 (822)
T PRK14574        262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR  341 (822)
T ss_pred             hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence                                                      0012333333333332222   2345678899999999


Q ss_pred             CHHHHHHHHHHHHHcC------cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          290 EMMKAVVYLELATRAG------ETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       290 ~~~~A~~~~~~a~~~~------~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ++++|...|+.++...      +.+......+++.+++.+++++|+.++.++.+.+|
T Consensus       342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p  398 (822)
T PRK14574        342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP  398 (822)
T ss_pred             CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence            9999999999997653      33444457899999999999999999999998665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1.3e-10  Score=100.13  Aligned_cols=258  Identities=15%  Similarity=0.069  Sum_probs=194.0

Q ss_pred             CcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------H
Q 019340           64 LPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------T  137 (342)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~  137 (342)
                      +|.+..+..-. +-..+..+|..++....+..  ...-++++.||.+|..    .|..+.||..-+..++..+      .
T Consensus        35 lsr~Yv~GlNf-LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRs----RGEvDRAIRiHQ~L~~spdlT~~qr~  107 (389)
T COG2956          35 LSRDYVKGLNF-LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRS----RGEVDRAIRIHQTLLESPDLTFEQRL  107 (389)
T ss_pred             ccHHHHhHHHH-HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHh----cchHHHHHHHHHHHhcCCCCchHHHH
Confidence            44444443333 33445567776666666643  2356899999999999    5999999999888777532      3


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH-------HHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV-------RAQYQ  208 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~-------~a~~~  208 (342)
                      .+...||.-|...|=++.|...|...++.+.  ..|.-.|-.+|.  ..++-++||..-++.+..+.-       .-+..
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ--~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ--ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence            5788999999999999999999999998643  679999999999  889999999999998876533       33445


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGL  283 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~  283 (342)
                      |+.-+..    ..|.++|..++.||+..  ....+-..+|.++. +.|   ++.+|++.++.++++++   ++....|-.
T Consensus       186 LAq~~~~----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         186 LAQQALA----SSDVDRARELLKKALQADKKCVRASIILGRVEL-AKG---DYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHhh----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hcc---chHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            5555554    67899999999999886  46778899999995 444   99999999999999876   567788999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          284 GLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       284 ~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +|...|+.++...++.++.+... .++..-+..+....  .-.+.|+....+-+..+|
T Consensus       258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~--~G~~~Aq~~l~~Ql~r~P  313 (389)
T COG2956         258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ--EGIDAAQAYLTRQLRRKP  313 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh--hChHHHHHHHHHHHhhCC
Confidence            99999999999999999998753 33433333333333  335556554444444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=5.7e-10  Score=104.02  Aligned_cols=248  Identities=13%  Similarity=0.023  Sum_probs=178.2

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHH-HcCCCCcCCHHHHHHHHHHHHhCC-CH--HHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRF-KHGRGVRKNLDKALDSFLKGAARG-ST--LAMVDAG  144 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y-~~g~g~~~~~~~A~~~~~~A~~~~-~~--~a~~~lg  144 (342)
                      +......+..||+.+|........+.   .+.+...+.++... ..    .++++.|..+|.++.+.. +.  ......+
T Consensus        88 ~~~gl~a~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~----~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a  160 (398)
T PRK10747         88 TEQALLKLAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQ----RGDEARANQHLERAAELADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            44455566789999886433332221   23455556664444 44    479999999999999863 22  2223458


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------------------
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----------------------  200 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----------------------  200 (342)
                      .++...|++++|+..+++..+.  +++.+...++.+|.  ..++.++|+..+.+..+.                      
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~--~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~  238 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI--RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ  238 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999998765  78999999999998  778888887655554321                      


Q ss_pred             ----------------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcc
Q 019340          201 ----------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPL  257 (342)
Q Consensus       201 ----------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~  257 (342)
                                            .++.+...++..+..    .++.++|...++++++.. ++......+.+.      ..
T Consensus       239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~  308 (398)
T PRK10747        239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE----CDDHDTAQQIILDGLKRQYDERLVLLIPRLK------TN  308 (398)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc------CC
Confidence                                  244455556666655    678899999999998853 443333333332      23


Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH-HHHHHHHhhcChhcHHHHHHHHHh
Q 019340          258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD-HVKNVILQQLSATSRDRAMLVVDS  334 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~  334 (342)
                      +.+++++.+++..+.  +++.....+|.++...+++++|..+|+++++..|.... ..++.++...  ++.++|.+.+++
T Consensus       309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--g~~~~A~~~~~~  386 (398)
T PRK10747        309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--HKPEEAAAMRRD  386 (398)
T ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence            899999999998876  66888899999999999999999999999999776654 5666666544  778888888877


Q ss_pred             hhc
Q 019340          335 WRA  337 (342)
Q Consensus       335 ~~~  337 (342)
                      -+.
T Consensus       387 ~l~  389 (398)
T PRK10747        387 GLM  389 (398)
T ss_pred             HHh
Confidence            644

>TIGR00540 hemY_coli hemY protein

Probab=99.43  E-value=4e-10  Score=105.49  Aligned_cols=250  Identities=11%  Similarity=0.023  Sum_probs=168.4

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCH--HHHHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GST--LAMVDAG  144 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~--~a~~~lg  144 (342)
                      .+.++...+..|++..|........+..+.  ....+...|.++..    .++++.|..+|.++.+. ++.  .+....+
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~----~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a  160 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQ----RGDEARANQHLEEAAELAGNDNILVEIART  160 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence            355555667888888887666554444322  33445555777666    47888888888888774 222  3444568


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------------------
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----------------------  200 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----------------------  200 (342)
                      .++...|++++|...++...+.  +++.++..++.+|.  ..++.++|+..+.+..+.                      
T Consensus       161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~--~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYI--RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887754  77888888888888  666777666665554432                      


Q ss_pred             ----------------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHH--HHHHHHHHcCCC
Q 019340          201 ----------------------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAM--YNTSLCYSFGEG  254 (342)
Q Consensus       201 ----------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~--~~lg~~y~~g~g  254 (342)
                                            .++..+..++..+..    .+++++|...++++++..  +....  .........   
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~---  311 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK---  311 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC---
Confidence                                  134445555555554    568999999999999863  22211  111122212   


Q ss_pred             CcccHHHHHHHHHHHHHc--CCH--HHHHHHHHHhhhcCCHHHHHHHHHH--HHHcCc-HHHHHHHHHHHhhcChhcHHH
Q 019340          255 LPLSHRQARKWMKRAADC--GHG--KAQLEHGLGLFTEGEMMKAVVYLEL--ATRAGE-TAADHVKNVILQQLSATSRDR  327 (342)
Q Consensus       255 ~~~~~~~A~~~~~~a~~~--~~~--~a~~~Lg~~~~~~~~~~~A~~~~~~--a~~~~~-~~a~~~~~~~~~~~~~~~~~~  327 (342)
                       +.+.+++++.++++.+.  +++  .....||+++...|++++|..+|++  +.+..+ +.....++.++..+  ++.++
T Consensus       312 -~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~  388 (409)
T TIGR00540       312 -PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAE  388 (409)
T ss_pred             -CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHH
Confidence             34788999999999876  566  6677999999999999999999994  655543 22333555555444  77888


Q ss_pred             HHHHHHhh
Q 019340          328 AMLVVDSW  335 (342)
Q Consensus       328 a~~~~~~~  335 (342)
                      |.+++++-
T Consensus       389 A~~~~~~~  396 (409)
T TIGR00540       389 AAAMRQDS  396 (409)
T ss_pred             HHHHHHHH
Confidence            88887764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.43  E-value=3.5e-11  Score=112.85  Aligned_cols=220  Identities=19%  Similarity=0.141  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------CCH--HHH-HHHHHHHhcCCCHHHHHHHHHHHHhC-----
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------GST--LAM-VDAGLMYWEMDKKEAAISLYRQAAVL-----  166 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~~--~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~-----  166 (342)
                      .....||.+|..    .+++++|+.++++|++.       .++  ..+ ..+|.+|...+++++|+..|++|+..     
T Consensus       200 ~~~~~La~~y~~----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  200 RTLRNLAEMYAV----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            466679999999    69999999999999986       333  233 45999999999999999999999843     


Q ss_pred             --CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          167 --GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GH---VRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       167 --~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                        .+   ...+.+|+.+|.  ..|++++|..+++++++-       .+   +..+.+++.++..    .+.+++|+.+|+
T Consensus       276 G~~h~~va~~l~nLa~ly~--~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q  349 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYY--KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQ  349 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHH
Confidence              23   468889999998  899999999999998762       23   3456677777776    678999999999


Q ss_pred             HHHHC-------CC---HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHhhhcCCH
Q 019340          232 RAAEG-------GY---VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----G-----HGKAQLEHGLGLFTEGEM  291 (342)
Q Consensus       232 ~A~~~-------~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~~~~~~~~  291 (342)
                      ++++.       .+   +....+||.+|.. .|   .+++|..+|++|+..     +     -...+.+||..|.+.+++
T Consensus       350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~g---k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~  425 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAKIYANLAELYLK-MG---KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY  425 (508)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHHH-hc---chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence            99763       12   4567899999965 33   999999999999874     1     145779999999999999


Q ss_pred             HHHHHHHHHHHHc----C--cHH-HHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          292 MKAVVYLELATRA----G--ETA-ADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       292 ~~A~~~~~~a~~~----~--~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      .+|...|..+..+    |  +++ -..+.++.-.+...+..+.|.++...+
T Consensus       426 ~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~  476 (508)
T KOG1840|consen  426 EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV  476 (508)
T ss_pred             chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            9999999888764    2  222 233445555556668888888876554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2.5e-11  Score=111.72  Aligned_cols=221  Identities=14%  Similarity=0.054  Sum_probs=170.4

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 019340          105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL  180 (342)
Q Consensus       105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  180 (342)
                      |.-|..+..    .|+..+|+-.|+.|+..+  +.++|..||.++.+..+-..||..+++++++  ++-+++..||..|.
T Consensus       289 f~eG~~lm~----nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  289 FKEGCNLMK----NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT  364 (579)
T ss_pred             HHHHHHHHh----cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence            446666666    578999999999999974  8999999999999999999999999999876  78999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---CC--CCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHc
Q 019340          181 QAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR---GV--DFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSF  251 (342)
Q Consensus       181 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~---~~--~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~  251 (342)
                        ..+.-.+|+.++.+=+....+..+...+..-....   +.  ...+..-.++|..|+.+    -+++.+.-||.+|..
T Consensus       365 --Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l  442 (579)
T KOG1125|consen  365 --NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL  442 (579)
T ss_pred             --hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence              88888999999998776554444333221111111   11  11234455666666654    378999999999954


Q ss_pred             CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAM  329 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~  329 (342)
                          .+++++|+.||+.|+..  ++..-|+.||..+.+..+.++|+..|.+|+++.|......+.+...++..+.+.+|.
T Consensus       443 ----s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  443 ----SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             ----chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence                44999999999999876  567778999999999999999999999999996655544455556667778888887


Q ss_pred             HHHHhh
Q 019340          330 LVVDSW  335 (342)
Q Consensus       330 ~~~~~~  335 (342)
                      .-+-+.
T Consensus       519 ~hlL~A  524 (579)
T KOG1125|consen  519 KHLLEA  524 (579)
T ss_pred             HHHHHH
Confidence            754443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=9.2e-11  Score=105.99  Aligned_cols=221  Identities=15%  Similarity=0.096  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +.++...|..+..    .+|...|.+-|.+++.+.  +...+..+|.+|....+.++..+.|.+|.+.  .+++.++.-|
T Consensus       326 A~al~~~gtF~fL----~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg  401 (606)
T KOG0547|consen  326 AEALLLRGTFHFL----KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG  401 (606)
T ss_pred             HHHHHHhhhhhhh----cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence            4566666666655    789999999999999985  4445789999999999999999999999866  7899999999


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG  252 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g  252 (342)
                      .+++  ..+++++|+.-|++++..+  +.-++..++...+.    ...+.++...|+.+...  .-+..+...|.++.. 
T Consensus       402 Qm~f--lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-  474 (606)
T KOG0547|consen  402 QMRF--LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-  474 (606)
T ss_pred             HHHH--HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-
Confidence            9999  8999999999999988765  56666777766555    55799999999999886  678899999999965 


Q ss_pred             CCCcccHHHHHHHHHHHHHcCCH--------HHHHHHHHHhhh-cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChh
Q 019340          253 EGLPLSHRQARKWMKRAADCGHG--------KAQLEHGLGLFT-EGEMMKAVVYLELATRAGETAADHVKNVILQQLSAT  323 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~~~~~--------~a~~~Lg~~~~~-~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~  323 (342)
                         .+++++|.+.|.+|++..+.        ..+.+-|.+..+ .+++..|...+++|++.+|.--....++....+..+
T Consensus       475 ---qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~  551 (606)
T KOG0547|consen  475 ---QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG  551 (606)
T ss_pred             ---HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence               44999999999999987443        233333333322 589999999999999999877777777777778889


Q ss_pred             cHHHHHHHHHhh
Q 019340          324 SRDRAMLVVDSW  335 (342)
Q Consensus       324 ~~~~a~~~~~~~  335 (342)
                      +.++|+++.+.-
T Consensus       552 ~i~eAielFEks  563 (606)
T KOG0547|consen  552 KIDEAIELFEKS  563 (606)
T ss_pred             hHHHHHHHHHHH
Confidence            999999987754

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.36  E-value=3e-12  Score=113.23  Aligned_cols=193  Identities=24%  Similarity=0.266  Sum_probs=145.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CC----CHHHHHHHHHHHhcCC------------------
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RG----STLAMVDAGLMYWEMD------------------  151 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~----~~~a~~~lg~~~~~~~------------------  151 (342)
                      .|.+.+.-+||..+..    ++.+++|+.+..+-+.    +|    ...++|+||.+|...|                  
T Consensus        92 lGEAKssgNLGNtlKv----~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev  167 (639)
T KOG1130|consen   92 LGEAKSSGNLGNTLKV----KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV  167 (639)
T ss_pred             hccccccccccchhhh----hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence            4556666667776655    7889999888777554    23    5678899999998765                  


Q ss_pred             --CHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH----cCC----HHHHHHHHHHH
Q 019340          152 --KKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI----AGH----VRAQYQLALCL  213 (342)
Q Consensus       152 --~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~----~~~----~~a~~~lg~~~  213 (342)
                        .++.|+++|..-+++    ++    ..++-+||..|+  -.||++.||..-+.-+.    -|+    -+|+.+||.|+
T Consensus       168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyY--lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYY--LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceee--eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence              366677777766543    43    346677888888  78899999887765332    233    46788999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHH----CC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH--------cCCHHH
Q 019340          214 HRGRGVDFNLQEAARWYLRAAE----GG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD--------CGHGKA  277 (342)
Q Consensus       214 ~~g~~~~~~~~~A~~~~~~A~~----~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~--------~~~~~a  277 (342)
                      ..    .++++.|+++|++++.    .+    .+..+|.||..|..    .+++.+|+.|+.+=+.        .|...+
T Consensus       246 if----lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl----l~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra  317 (639)
T KOG1130|consen  246 IF----LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL----LKEVQKAITYHQRHLAIAQELEDRIGELRA  317 (639)
T ss_pred             hh----hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            86    7899999999998754    34    46678999999965    4589999999887433        266889


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          278 QLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ++.||..|...|+.++|+.+.++.++.
T Consensus       318 cwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  318 CWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999888764

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.32  E-value=5.6e-09  Score=107.13  Aligned_cols=250  Identities=9%  Similarity=-0.048  Sum_probs=120.7

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~  153 (342)
                      ..|+..+|..++....+... .++...+..|-..|..    .+++++|+..|......+   +...+..|-..|...|++
T Consensus       484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k----~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~  558 (1060)
T PLN03218        484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCAR----AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV  558 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            45556666555544443322 2344455445445544    355666666665555543   444455555555555555


Q ss_pred             HHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCC--------
Q 019340          154 EAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGR--------  217 (342)
Q Consensus       154 ~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~--------  217 (342)
                      ++|.+.|......     .+...+..|-.+|.  ..+++++|.+.|++..+.+   ++..+..+...|...+        
T Consensus       559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~--k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        559 DRAFDVLAEMKAETHPIDPDHITVGALMKACA--NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            5555555555431     22333333444444  4445555555555544433   2334444443433300        


Q ss_pred             -----------------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          218 -----------------------GVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       218 -----------------------~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                                             ...+++++|.+.+....+.|   +...+..|..+|...    ++.++|...|++..+
T Consensus       637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~----G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA----KNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence                                   00334555555555555443   334444555555331    155555555555543


Q ss_pred             c---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          272 C---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       272 ~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      .   .+...+..|...|...|++++|..+|+...+.| .++...+..++......++.++|..++.+..+
T Consensus       713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2   234455555555555666666666666555443 23444444444444455555556555555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5.8e-10  Score=96.17  Aligned_cols=210  Identities=17%  Similarity=0.083  Sum_probs=165.8

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHcCCccCHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQAQPANAEE  189 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~g~~~~~~~  189 (342)
                      ..+.++|++.|...++.+  ..++++.||.+|...|+.+.||..-+..++..+      .-|.+.||.=|+  ..|=++.
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym--~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM--AAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH--HhhhhhH
Confidence            578999999999999864  678899999999999999999998777765532      358888999999  8899999


Q ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHH-------HHHHHHHcCCCCcccHH
Q 019340          190 AVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMY-------NTSLCYSFGEGLPLSHR  260 (342)
Q Consensus       190 A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~-------~lg~~y~~g~g~~~~~~  260 (342)
                      |...|...++.+  -..|.-.|-.+|..    .+++++|+..-++.+..+.-.-..       .|+..+..    ..|.+
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~----treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~~~d  197 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQA----TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SSDVD  197 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hhhHH
Confidence            999999999854  35788899999987    889999999999988876443333       44444432    45999


Q ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH-HHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          261 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       261 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      +|+.++++|+..  ..+.+-..||.++...|++++|++.+++.++.++.---. ...+...+-..++.++.+..+.+...
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999876  457788999999999999999999999999998754322 22223333344677777666665543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.31  E-value=7.8e-09  Score=106.13  Aligned_cols=247  Identities=12%  Similarity=-0.026  Sum_probs=177.1

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCC
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMD  151 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~  151 (342)
                      ....+++..|..++....+... .++...+..|-.+|..    .++.++|..+|+...+.|   +...+..+...|.+.|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k----~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAK----SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh----CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            3467889999888877665543 3566677666677766    489999999999999865   7788889999999999


Q ss_pred             CHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCCCCH
Q 019340          152 KKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQYQLALCLHRGRGVDFNL  223 (342)
Q Consensus       152 ~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~  223 (342)
                      ++++|++.|+...+.   -+...+..|-..|.  ..+++++|.+.|.+....     .+...+..|-.+|..    .+++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~--k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k----~G~l  595 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACG--QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN----AGQV  595 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----CCCH
Confidence            999999999998876   35667777888887  789999999999998652     255677777777766    6678


Q ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHH
Q 019340          224 QEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVY  297 (342)
Q Consensus       224 ~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~  297 (342)
                      ++|.+.|++..+.+   +...+..+...|.. .|   +.++|+..|++....|   +...+..|...|...|++++|..+
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G---~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l  671 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG---DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI  671 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            88999888888765   45566666666654 22   6777777777766542   344555666666666666666666


Q ss_pred             HHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          298 LELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       298 ~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      ++...+.| .++...+..++..+...++.++|.++++++.
T Consensus       672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            66666654 2344444455555555566666666665553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.31  E-value=4e-09  Score=98.36  Aligned_cols=213  Identities=8%  Similarity=-0.101  Sum_probs=165.4

Q ss_pred             hhCCChhHHhhHHHHHHHHHHhCcCCCHHHH-HHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC
Q 019340           74 ASFTLPQLRAASLVCKSWNDALRPLREAMVL-LRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM  150 (342)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~-~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~  150 (342)
                      .....|++..+...+.+..+..++  +..+. ...+.++..    .+++++|+..+++..+.  +++.++..++.+|...
T Consensus       127 aA~~~g~~~~A~~~l~~A~~~~~~--~~~~~~l~~a~l~l~----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        127 AAQQRGDEARANQHLERAAELADN--DQLPVEITRVRIQLA----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            347889999987666665554333  22222 233778877    58999999999999886  5899999999999999


Q ss_pred             CCHHHHHHHHHHHHhC--------------------------------------------CCHHHHHHHHHHHHcCCccC
Q 019340          151 DKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQAQPAN  186 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~g~~~~  186 (342)
                      ||+++|++.+.+..+.                                            +++.+...++..+.  ..++
T Consensus       201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~--~~g~  278 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI--ECDD  278 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH--HCCC
Confidence            9999999666554421                                            24556666677777  7899


Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340          187 AEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQAR  263 (342)
Q Consensus       187 ~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~  263 (342)
                      .++|...++++++.. ++......+.+.      .++.++++...++.++.  +++.....+|.++..    .+++.+|.
T Consensus       279 ~~~A~~~L~~~l~~~~~~~l~~l~~~l~------~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~----~~~~~~A~  348 (398)
T PRK10747        279 HDTAQQIILDGLKRQYDERLVLLIPRLK------TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK----HGEWQEAS  348 (398)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHhhcc------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence            999999999998853 555444444442      46889999999988876  688889999999976    33999999


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          264 KWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       264 ~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .+|+++++.. +...+..|+.++...|+.++|..+|++++.+
T Consensus       349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999984 4566789999999999999999999999765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.30  E-value=3.5e-10  Score=97.77  Aligned_cols=175  Identities=15%  Similarity=0.061  Sum_probs=121.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH--
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP--  169 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~--  169 (342)
                      ..+..++.+|..+..    .+++++|+..|++++...  ++   .+++.+|.+|...|++++|+..|+++++.  +++  
T Consensus        31 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        31 WPAEELYEEAKEALD----SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            467788888888877    578888888888887753  22   57788888888888888888888888765  333  


Q ss_pred             -HHHHHHHHHHHcC------CccCHHHHHHHHHHHHHc--CCHHHH---HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          170 -AGQFNLGISYLQA------QPANAEEAVKLLYQASIA--GHVRAQ---YQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       170 -~a~~~Lg~~~~~g------~~~~~~~A~~~~~~a~~~--~~~~a~---~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                       .+++.+|.++...      ..+++++|+..|++++..  ++..+.   ..++.++..                      
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----------------------  164 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR----------------------  164 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------------------
Confidence             3788888888731      126778888888887764  333332   222222110                      


Q ss_pred             CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      .......+|.+|.. .|   ++.+|+..|+++++..     .+.+++.+|.++...|++++|..+++....
T Consensus       165 ~~~~~~~~a~~~~~-~g---~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       165 LAGKELYVARFYLK-RG---AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHHHHHH-cC---ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            01233467777754 23   8888888888888752     257888888888888888888888776654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.30  E-value=6.8e-11  Score=104.82  Aligned_cols=249  Identities=18%  Similarity=0.122  Sum_probs=177.0

Q ss_pred             HhhCCChhHHhhHHHHHHHHHHhCcC-C-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh--------CCCHHHHHH
Q 019340           73 AASFTLPQLRAASLVCKSWNDALRPL-R-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA--------RGSTLAMVD  142 (342)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~--------~~~~~a~~~  142 (342)
                      ..++..|+.......++..++...+. . -...+.+||..|..    .+|+++|+++-.--+.        .|.+.+.-+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfy----L~DY~kAl~yH~hDltlar~lgdklGEAKssgN  100 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFY----LKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN  100 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhh----HhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence            34567777777766666555554321 0 12456678887777    6899999988654332        267788899


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHH----hCC----CHHHHHHHHHHHHc-CC-----------------ccCHHHHHHHHHH
Q 019340          143 AGLMYWEMDKKEAAISLYRQAA----VLG----DPAGQFNLGISYLQ-AQ-----------------PANAEEAVKLLYQ  196 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~----~~~----~~~a~~~Lg~~~~~-g~-----------------~~~~~~A~~~~~~  196 (342)
                      ||.++...|.+++|+.+..+-+    +++    ...|+||||.+|.. |.                 ...++.|+++|+.
T Consensus       101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e  180 (639)
T KOG1130|consen  101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME  180 (639)
T ss_pred             ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999988855    334    46899999999984 21                 1235666777776


Q ss_pred             HHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----CCC----HHHHHHHHHHHHcCCCCcccHH
Q 019340          197 ASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----GGY----VRAMYNTSLCYSFGEGLPLSHR  260 (342)
Q Consensus       197 a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~----~~~----~~a~~~lg~~y~~g~g~~~~~~  260 (342)
                      -+++    ++    .+++-+||..|+-    .+|++.|+.+-+.-+.    .|+    -.|+-|||.+|..    ..+++
T Consensus       181 NL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif----lg~fe  252 (639)
T KOG1130|consen  181 NLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF----LGNFE  252 (639)
T ss_pred             HHHHHHHhhhHHhhcchhcccCceeee----eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh----hcccH
Confidence            4432    33    4566778888775    7899999987665433    244    3578899999954    33999


Q ss_pred             HHHHHHHHHHH----cCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH--------cCcHHHHHHHHHHHhhcChhc
Q 019340          261 QARKWMKRAAD----CGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR--------AGETAADHVKNVILQQLSATS  324 (342)
Q Consensus       261 ~A~~~~~~a~~----~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~~~~~~~~~~~~~  324 (342)
                      .|+++|++++.    .++    +..+|.||..|.-..++++|+.|+.+=+.        +|...++..++.....+  ++
T Consensus       253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al--g~  330 (639)
T KOG1130|consen  253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL--GE  330 (639)
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--hh
Confidence            99999999754    444    56789999999999999999999987543        25566676666666555  66


Q ss_pred             HHHHHHHHHhh
Q 019340          325 RDRAMLVVDSW  335 (342)
Q Consensus       325 ~~~a~~~~~~~  335 (342)
                      .++|...+...
T Consensus       331 h~kAl~fae~h  341 (639)
T KOG1130|consen  331 HRKALYFAELH  341 (639)
T ss_pred             HHHHHHHHHHH
Confidence            66777666544

>PLN02789 farnesyltranstransferase

Probab=99.30  E-value=2.2e-09  Score=96.38  Aligned_cols=203  Identities=9%  Similarity=-0.091  Sum_probs=98.8

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH-
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK-  153 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~-  153 (342)
                      ..+...+|.......++..++  +..+++..|.++..-   ..++++++.++.++++.  .+..++++.+.++...++. 
T Consensus        49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L---~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEAL---DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence            344555555555555554433  445555555555441   12455556665555554  2445555555555544442 


Q ss_pred             -HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC---CCCCCCHHH
Q 019340          154 -EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG---RGVDFNLQE  225 (342)
Q Consensus       154 -~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g---~~~~~~~~~  225 (342)
                       ++++.++.++++.  .+..++.+.|.++.  ..+++++++.++.++++.  .+..+++..|.++...   .+.....++
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~--~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLR--TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence             4555555555533  44555555555555  445555666666655553  3555555555554432   111122334


Q ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340          226 AARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF  286 (342)
Q Consensus       226 A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  286 (342)
                      .+.+..+++..  .+..+|++++.++...........+|...+..+...  .+..++..|+.+|.
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~  266 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC  266 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence            55555555543  345555555555533110011333455555554442  33444555555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.28  E-value=2e-10  Score=91.31  Aligned_cols=118  Identities=12%  Similarity=0.047  Sum_probs=84.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340          125 LDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--  200 (342)
Q Consensus       125 ~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--  200 (342)
                      ..+|+++++.+. ..++.+|.++...|++++|+.+|++++..  .++.+++++|.++.  ..|++++|+.+|++++..  
T Consensus        13 ~~~~~~al~~~p-~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDP-ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM--MLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCC
Confidence            356777777653 33666777777778888888888887755  66777778888777  777888888888887763  


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      +++.+++++|.++..    .+++++|+..|++|+..  +++..+.+.|.+.
T Consensus        90 ~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         90 SHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            577778888887776    56777777777777765  4566666666554

>PLN02789 farnesyltranstransferase

Probab=99.27  E-value=6.1e-09  Score=93.48  Aligned_cols=216  Identities=9%  Similarity=-0.116  Sum_probs=169.3

Q ss_pred             CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC--HHHHH
Q 019340          119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN--AEEAV  191 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~--~~~A~  191 (342)
                      +..++|+..+.++++.+  +..++...|.++...+ ++++++.++.+++..  .+..++.+.+.++.  ..++  .++++
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~--~l~~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE--KLGPDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH--HcCchhhHHHH
Confidence            57889999999999974  7889999999999888 689999999999865  77889999998887  4444  37889


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC---CCCcccHHHHHH
Q 019340          192 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG---EGLPLSHRQARK  264 (342)
Q Consensus       192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g---~g~~~~~~~A~~  264 (342)
                      .++.++++.  .+..++...|.++..    .+++++++.++.++++.  .+..+|+..+.+....   .+.....++++.
T Consensus       129 ~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        129 EFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            999998875  489999999999987    66899999999999986  5888999999987543   233334578899


Q ss_pred             HHHHHHHc--CCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcCh--------------
Q 019340          265 WMKRAADC--GHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSA--------------  322 (342)
Q Consensus       265 ~~~~a~~~--~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~~~--------------  322 (342)
                      +..+++..  .+..+++.++.++..    .++..+|...+..++..+  ...|...+.-+......              
T Consensus       205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~  284 (320)
T PLN02789        205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE  284 (320)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence            99999876  678899999999987    345677999999987764  44555555544443211              


Q ss_pred             --hcHHHHHHHHHhhhcCCC
Q 019340          323 --TSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       323 --~~~~~a~~~~~~~~~~~~  340 (342)
                        ...++|.+++..+.+-.|
T Consensus       285 ~~~~~~~a~~~~~~l~~~d~  304 (320)
T PLN02789        285 ELSDSTLAQAVCSELEVADP  304 (320)
T ss_pred             ccccHHHHHHHHHHHHhhCc
Confidence              134678888887755544

>TIGR00540 hemY_coli hemY protein

Probab=99.26  E-value=3.2e-09  Score=99.45  Aligned_cols=218  Identities=9%  Similarity=-0.065  Sum_probs=143.2

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~  149 (342)
                      +......|++..+...+....+..++.+ .......+.++..    .+++++|...+++..+.  +++.++..++.+|..
T Consensus       125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~----~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       125 AEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLA----QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3334455666666555554444332211 1122223555555    35666666666666654  356666666666666


Q ss_pred             CCCHHHHHHHHHHHHhC--------------------------------------------CCHHHHHHHHHHHHcCCcc
Q 019340          150 MDKKEAAISLYRQAAVL--------------------------------------------GDPAGQFNLGISYLQAQPA  185 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~--------------------------------------------~~~~a~~~Lg~~~~~g~~~  185 (342)
                      .||+++|++.+.+..+.                                            +++...+.++..+.  ..+
T Consensus       200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~--~~g  277 (409)
T TIGR00540       200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI--DCD  277 (409)
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH--HCC
Confidence            66666666555544422                                            24556666666666  788


Q ss_pred             CHHHHHHHHHHHHHcC--CHHHH--HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHcCCCCcc
Q 019340          186 NAEEAVKLLYQASIAG--HVRAQ--YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYV--RAMYNTSLCYSFGEGLPL  257 (342)
Q Consensus       186 ~~~~A~~~~~~a~~~~--~~~a~--~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~--~a~~~lg~~y~~g~g~~~  257 (342)
                      ++++|+..++++++..  +....  .........    +.+.+++.+.++++.+.  +++  .....+|+++..    .+
T Consensus       278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~----~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~----~~  349 (409)
T TIGR00540       278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK----PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK----HG  349 (409)
T ss_pred             ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC----CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----cc
Confidence            9999999999998853  33211  111112222    56788999999998876  677  677799999965    33


Q ss_pred             cHHHHHHHHHH--HHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          258 SHRQARKWMKR--AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       258 ~~~~A~~~~~~--a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ++++|.++|++  +.+. .++..+..||.++...|+.++|.++|++++..
T Consensus       350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999995  5554 45666779999999999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.26  E-value=4.5e-10  Score=94.13  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=90.3

Q ss_pred             ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccH
Q 019340          184 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSH  259 (342)
Q Consensus       184 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~  259 (342)
                      .++.++++..++++++  ++++++|+.||.+|..    .+++++|+..|++|+..  +++..+.++|.++....| ...+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g-~~~~  126 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG-QHMT  126 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CCCc
Confidence            4566677777777665  3577777777777766    56777777777777765  467777777775322222 1136


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340          260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH  311 (342)
Q Consensus       260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  311 (342)
                      ++|...++++++.  +++.++++||..+...|++++|+.+|+++++..+++...
T Consensus       127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            8999999999876  568899999999999999999999999999987765543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.22  E-value=1.7e-09  Score=93.49  Aligned_cols=197  Identities=9%  Similarity=-0.052  Sum_probs=135.2

Q ss_pred             cccccccccCCCCCCCCCCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHH
Q 019340           46 RFSCSRSIKSTEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKA  124 (342)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A  124 (342)
                      +.+|++.............+...+..+...+..+++.+|...+....+..+..+. ..+++.+|.+|..    .+++++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A   89 (235)
T TIGR03302        14 LAGCSSKKKKEADPVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA   89 (235)
T ss_pred             HhhccCCcccccCCcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence            4567666333222233344566777778888999999999988888887765433 3588999999999    5999999


Q ss_pred             HHHHHHHHhCC--CH---HHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHH
Q 019340          125 LDSFLKGAARG--ST---LAMVDAGLMYWEM--------DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEE  189 (342)
Q Consensus       125 ~~~~~~A~~~~--~~---~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~  189 (342)
                      +..|+++++..  ++   .+++.+|.++...        |++++|++.|++++..  ++..+...+..+..  .    ..
T Consensus        90 ~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~--~----~~  163 (235)
T TIGR03302        90 IAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY--L----RN  163 (235)
T ss_pred             HHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH--H----HH
Confidence            99999999863  33   3789999999875        7899999999999865  34333222211111  0    00


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340          190 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARK  264 (342)
Q Consensus       190 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~  264 (342)
                                 ........+|.+|..    .+++.+|+..|+++++..     .+.+++.+|.+|.. .|   ++++|..
T Consensus       164 -----------~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~-lg---~~~~A~~  224 (235)
T TIGR03302       164 -----------RLAGKELYVARFYLK----RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK-LG---LKDLAQD  224 (235)
T ss_pred             -----------HHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH-cC---CHHHHHH
Confidence                       011233467777766    567888888888887651     35778888888854 33   8888888


Q ss_pred             HHHHHHH
Q 019340          265 WMKRAAD  271 (342)
Q Consensus       265 ~~~~a~~  271 (342)
                      +++....
T Consensus       225 ~~~~l~~  231 (235)
T TIGR03302       225 AAAVLGA  231 (235)
T ss_pred             HHHHHHh
Confidence            7776554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=7.7e-10  Score=87.96  Aligned_cols=108  Identities=13%  Similarity=0.029  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +..++.+|.++..    .+++++|+.+|++++..  .+..+++.+|.++...|++++|+.+|++++..  +++.+++++|
T Consensus        24 p~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         24 PETVYASGYASWQ----EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3346677888887    68999999999999997  48899999999999999999999999999875  8899999999


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Q 019340          177 ISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLH  214 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~  214 (342)
                      .++.  ..|++++|+..|++++.  ++++..+.+.|.+..
T Consensus       100 ~~l~--~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359        100 VCLK--MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999  89999999999999987  468888888887764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.20  E-value=2.2e-08  Score=100.24  Aligned_cols=248  Identities=13%  Similarity=-0.049  Sum_probs=162.5

Q ss_pred             hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC
Q 019340           74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM  150 (342)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~  150 (342)
                      .....|++.+|..++...........+...+..+-..+..    .++.+.+...+......|   +...+..|..+|...
T Consensus        96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~  171 (697)
T PLN03081         96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIA----LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC  171 (697)
T ss_pred             HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence            3446788888887776554433333466666666666666    478899999999888765   667788888999999


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHH---------------------
Q 019340          151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQ---------------------  206 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~---------------------  206 (342)
                      |++++|.+.|++..+ .+...+..+...|.  ..+++++|+..|++..+.+   +...+                     
T Consensus       172 g~~~~A~~lf~~m~~-~~~~t~n~li~~~~--~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~  248 (697)
T PLN03081        172 GMLIDARRLFDEMPE-RNLASWGTIIGGLV--DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC  248 (697)
T ss_pred             CCHHHHHHHHhcCCC-CCeeeHHHHHHHHH--HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence            999999999988755 45667777888887  7789999999999887654   22222                     


Q ss_pred             --------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          207 --------------YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       207 --------------~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                                    ..|-.+|..    .++.++|.+.|++.. ..+..+|..|...|.. .|   +.++|+..|++....
T Consensus       249 ~~~~~g~~~d~~~~n~Li~~y~k----~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~-~g---~~~eA~~lf~~M~~~  319 (697)
T PLN03081        249 CVLKTGVVGDTFVSCALIDMYSK----CGDIEDARCVFDGMP-EKTTVAWNSMLAGYAL-HG---YSEEALCLYYEMRDS  319 (697)
T ss_pred             HHHHhCCCccceeHHHHHHHHHH----CCCHHHHHHHHHhCC-CCChhHHHHHHHHHHh-CC---CHHHHHHHHHHHHHc
Confidence                          222233332    345666666665542 2345566666666643 22   666676666666544


Q ss_pred             C---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          273 G---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       273 ~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      +   +...+..+...+...|++++|...+....+.| .++......++..+...++.++|.++++++.+
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~  388 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR  388 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            2   34555666666666667777777666666665 34444444555555556667777777666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.18  E-value=4.6e-09  Score=96.43  Aligned_cols=197  Identities=13%  Similarity=0.002  Sum_probs=146.9

Q ss_pred             cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH
Q 019340           97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP  169 (342)
Q Consensus        97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~  169 (342)
                      ++..+.++..+|.++...    ++.+.+...+.++...     +..+..+..+.++...|++++|+.+++++++.  ++.
T Consensus         2 dp~~~~a~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~   77 (355)
T cd05804           2 DPDFALGHAAAALLLLLG----GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL   77 (355)
T ss_pred             CCccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            345789999999888873    6778878888887664     24566777888999999999999999999865  555


Q ss_pred             HHHHHHHHHHHc-C-CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Q 019340          170 AGQFNLGISYLQ-A-QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMY  243 (342)
Q Consensus       170 ~a~~~Lg~~~~~-g-~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~  243 (342)
                      .++.. +..+.. | ..+....+...+.....  ++...+...+|.++..    .+++++|+..++++++.  .++.++.
T Consensus        78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~~~~~~al~~~p~~~~~~~  152 (355)
T cd05804          78 LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----AGQYDRAEEAARRALELNPDDAWAVH  152 (355)
T ss_pred             HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcHHHH
Confidence            55553 434431 1 23444444444444211  2345667788889887    77899999999999987  4677889


Q ss_pred             HHHHHHHcCCCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          244 NTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       244 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      .+|.+|.. .|   ++++|+.++.++++..+      ...+..+|.++...|++++|+.+|++++...+
T Consensus       153 ~la~i~~~-~g---~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         153 AVAHVLEM-QG---RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHH-cC---CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            99999965 33   99999999999988532      23456899999999999999999999975543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.18  E-value=4.6e-09  Score=105.16  Aligned_cols=244  Identities=10%  Similarity=-0.036  Sum_probs=127.2

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~  153 (342)
                      ..|+..+|..++...    . .++..++..|...|..    .++.++|+.+|++..+.|   +...+..+...+...|++
T Consensus       271 k~g~~~~A~~vf~~m----~-~~~~vt~n~li~~y~~----~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~  341 (697)
T PLN03081        271 KCGDIEDARCVFDGM----P-EKTTVAWNSMLAGYAL----HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL  341 (697)
T ss_pred             HCCCHHHHHHHHHhC----C-CCChhHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence            456666665444322    1 2355556666666666    366777777776665543   444555555555555666


Q ss_pred             HHHHHHHHHHHhCC---CHHHHHHHHHHHHc-----------------------------CCccCHHHHHHHHHHHHHcC
Q 019340          154 EAAISLYRQAAVLG---DPAGQFNLGISYLQ-----------------------------AQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       154 ~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~-----------------------------g~~~~~~~A~~~~~~a~~~~  201 (342)
                      ++|.+.+....+.+   +...+..|...|..                             +..|+.++|++.|++..+.|
T Consensus       342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g  421 (697)
T PLN03081        342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG  421 (697)
T ss_pred             HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66666555555442   22333334444430                             04445555555555544433


Q ss_pred             ---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340          202 ---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH  274 (342)
Q Consensus       202 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  274 (342)
                         +...+..+-..+..    .++.++|.++|+...+. +   +...+..+..+|.+    .++.++|.+.+++.....+
T Consensus       422 ~~Pd~~T~~~ll~a~~~----~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~~eA~~~~~~~~~~p~  493 (697)
T PLN03081        422 VAPNHVTFLAVLSACRY----SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLLDEAYAMIRRAPFKPT  493 (697)
T ss_pred             CCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCHHHHHHHHHHCCCCCC
Confidence               22333333333333    33455555555554432 1   22234444444432    1256666666555433344


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      ...+..|...+...|+++.|...+++..+.++.+...+..++..+...+++++|.++.+..+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            455556666666666666666666666666655444444555555666777777777776654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=1.3e-09  Score=91.29  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH-HcCCccCHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY-LQAQPANAEEAVK  192 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~-~~g~~~~~~~A~~  192 (342)
                      .++.++++..+++++..  +++.+++.||.+|...|++++|+..|++++..  ++++.+..+|.++ .......+++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            35677777788887775  47778888888888888888888888887754  6777888888764 4211122578888


Q ss_pred             HHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          193 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       193 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      .++++++.  +++.+++.||.++..    .+++++|+.+|+++++..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence            88887664  477788888888776    667788888888777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.14  E-value=1.5e-08  Score=101.42  Aligned_cols=191  Identities=10%  Similarity=-0.076  Sum_probs=151.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHH-
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFN-  174 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~-  174 (342)
                      ...+...|..+++..+    .||++.|+..|+++++..  ++.+...+..++...|+.++|+.++++++...+...... 
T Consensus        31 p~~~~~~y~~aii~~r----~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         31 PAMADTQYDSLIIRAR----AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             ccchhHHHHHHHHHHh----CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            3467888999999998    599999999999999875  433455888888889999999999999997655444444 


Q ss_pred             -HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019340          175 -LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSF  251 (342)
Q Consensus       175 -Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~  251 (342)
                       +|.+|.  ..+++++|+..|+++++.  +++.++..|+.+|..    .++.++|+..++++.........+ ++.+|..
T Consensus       107 alA~ly~--~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        107 SAARAYR--NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence             477998  889999999999999875  588999888888877    678999999999998874433333 5555543


Q ss_pred             CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                      . + ..+..+|+..|+++++.  ++.+.+..+..++...|-...|.+..+.-
T Consensus       180 ~-~-~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~  229 (822)
T PRK14574        180 R-A-TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN  229 (822)
T ss_pred             H-h-cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence            2 1 23666699999999987  55788888888888888888888776653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.9e-08  Score=91.09  Aligned_cols=197  Identities=20%  Similarity=0.207  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHH--------H
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPA--------G  171 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~--------a  171 (342)
                      ...-.||.....    ++++..|+++|.+++++. +..-+.+.+-.|++.|.+.+.+....++++.| ...        +
T Consensus       225 ~~ek~lgnaayk----kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~  300 (539)
T KOG0548|consen  225 HKEKELGNAAYK----KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA  300 (539)
T ss_pred             hHHHHHHHHHHH----hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence            344557777766    589999999999999875 55566789999999999999999999988773 333        3


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHHcC-------------------------C---HHHHHHHHHHHhcCCCCCCCH
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASIAG-------------------------H---VRAQYQLALCLHRGRGVDFNL  223 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-------------------------~---~~a~~~lg~~~~~g~~~~~~~  223 (342)
                      +..+|..|.  ..++++.++.+|++++..-                         +   ......-|..++.    .+|+
T Consensus       301 ~~r~g~a~~--k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy  374 (539)
T KOG0548|consen  301 LARLGNAYT--KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDY  374 (539)
T ss_pred             HHHhhhhhh--hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCH
Confidence            333555666  6789999999999986521                         1   1112334666665    7899


Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      ..|+.+|.+|+..  .++..+.|.+.||.. .|   ++..|+...+.+++.++  ..+|..-|.++..+.+|++|...|.
T Consensus       375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~k-L~---~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~  450 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPEDARLYSNRAACYLK-LG---EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ  450 (539)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHH-Hh---hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987  578889999999965 33   99999999999998854  6788999999999999999999999


Q ss_pred             HHHHcCcHHHHHH
Q 019340          300 LATRAGETAADHV  312 (342)
Q Consensus       300 ~a~~~~~~~a~~~  312 (342)
                      .+++.++......
T Consensus       451 eale~dp~~~e~~  463 (539)
T KOG0548|consen  451 EALELDPSNAEAI  463 (539)
T ss_pred             HHHhcCchhHHHH
Confidence            9999987666543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.08  E-value=9e-09  Score=101.16  Aligned_cols=148  Identities=12%  Similarity=-0.028  Sum_probs=124.5

Q ss_pred             hhHHhhHHHHHHHHHHhCcCC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 019340           79 PQLRAASLVCKSWNDALRPLR-EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA  155 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~-~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~  155 (342)
                      +..+.+...+........+.. ++.++++||.+..+    .+.+++|..+++.+++.  ++..+..+++.++.+.+.+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~----~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~ee  138 (694)
T PRK15179         63 AAVHKPAAALPELLDYVRRYPHTELFQVLVARALEA----AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEA  138 (694)
T ss_pred             hhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHH
Confidence            333333333333333333333 58999999999999    58999999999999986  689999999999999999999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      |+.++++++..  +++.+++.+|.++.  ..|++++|+.+|++++.+  +++.++..+|.++..    .++.++|...|+
T Consensus       139 A~~~~~~~l~~~p~~~~~~~~~a~~l~--~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~  212 (694)
T PRK15179        139 GRAEIELYFSGGSSSAREILLEAKSWD--EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQ  212 (694)
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHH--HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Confidence            99999999865  88999999999999  999999999999999965  478999999999987    778999999999


Q ss_pred             HHHHC
Q 019340          232 RAAEG  236 (342)
Q Consensus       232 ~A~~~  236 (342)
                      +|++.
T Consensus       213 ~a~~~  217 (694)
T PRK15179        213 AGLDA  217 (694)
T ss_pred             HHHHh
Confidence            99986

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.8e-08  Score=87.07  Aligned_cols=188  Identities=16%  Similarity=0.104  Sum_probs=154.1

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .+++..|+.+-+++++.+  +..++..-|.++...++.++|+-.|+.|..+.  .-+.+-.|-.+|.  ..+.+.+|...
T Consensus       313 ~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL--A~~~~kEA~~~  390 (564)
T KOG1174|consen  313 EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL--AQKRFKEANAL  390 (564)
T ss_pred             hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH--hhchHHHHHHH
Confidence            478888999999998874  78899999999999999999999999998775  4566777777788  88899999888


Q ss_pred             HHHHHH--cCCHHHHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019340          194 LYQASI--AGHVRAQYQLA-LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKR  268 (342)
Q Consensus       194 ~~~a~~--~~~~~a~~~lg-~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  268 (342)
                      -..++.  +.++.+.-.+| .++..   .+.-.++|..++++++.+  ++..|-..++.++..    ++.++.++..+++
T Consensus       391 An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  391 ANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHH
Confidence            877766  35777777786 44432   155679999999999987  688899999988854    5589999999999


Q ss_pred             HHHc-CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340          269 AADC-GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN  314 (342)
Q Consensus       269 a~~~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~  314 (342)
                      .+.. .+..-...||.++...+.+.+|+.+|..|++++|.+-....+
T Consensus       464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G  510 (564)
T KOG1174|consen  464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG  510 (564)
T ss_pred             HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence            9875 667778899999999999999999999999998776555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=6.9e-09  Score=98.21  Aligned_cols=214  Identities=16%  Similarity=0.024  Sum_probs=164.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGIS  178 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~  178 (342)
                      .+...-.++.++..    .|=...|+..|++      ...+-.+..+|...|+..+|....++-++ ..++..+..||.+
T Consensus       397 ~Wq~q~~laell~s----lGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  397 IWQLQRLLAELLLS----LGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV  466 (777)
T ss_pred             cchHHHHHHHHHHH----cchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence            44555666776666    3456678888877      56777888899999999999999999998 4778888888988


Q ss_pred             HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCc
Q 019340          179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~  256 (342)
                      ..  ++.=+++|.++....    +..|+..+|.....    .+++.++.++++.+++.  .....|+.+|.++..    .
T Consensus       467 ~~--d~s~yEkawElsn~~----sarA~r~~~~~~~~----~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----l  532 (777)
T KOG1128|consen  467 LH--DPSLYEKAWELSNYI----SARAQRSLALLILS----NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----L  532 (777)
T ss_pred             cc--ChHHHHHHHHHhhhh----hHHHHHhhcccccc----chhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----H
Confidence            77  544444444444332    45677888877665    67899999999999887  467889999999865    3


Q ss_pred             ccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340          257 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVV  332 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~  332 (342)
                      .+...|..+|..++..  ++.++++||...|...++..+|...++.|+..+  +.....|+..+.  ..-+++++|.+.+
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs--vdvge~eda~~A~  610 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS--VDVGEFEDAIKAY  610 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh--hhcccHHHHHHHH
Confidence            3899999999998764  789999999999999999999999999998875  555565554444  5558899999998


Q ss_pred             HhhhcCC
Q 019340          333 DSWRAMP  339 (342)
Q Consensus       333 ~~~~~~~  339 (342)
                      +++.+.+
T Consensus       611 ~rll~~~  617 (777)
T KOG1128|consen  611 HRLLDLR  617 (777)
T ss_pred             HHHHHhh
Confidence            8876543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.04  E-value=1.7e-07  Score=88.07  Aligned_cols=252  Identities=17%  Similarity=0.059  Sum_probs=139.5

Q ss_pred             hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCC
Q 019340           74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDK  152 (342)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~  152 (342)
                      .....|+...|..+..+.++..+..  -..+  |+.+-..  +....++.|..+|.+|-.. |....++.-+.+....++
T Consensus       593 e~w~agdv~~ar~il~~af~~~pns--eeiw--laavKle--~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEANPNS--EEIW--LAAVKLE--FENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhCCCc--HHHH--HHHHHHh--hccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            3344566666666665555554431  1111  1211111  1235566666666666543 455555555556666666


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      .++|+.+++.+++.  ..+..+..+|.++.  +.++.+.|...|...+.  ++.+..|..|+.+-+.    .++..+|..
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e--~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR~  740 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEE--QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRARS  740 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHH--HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHHH
Confidence            66666666666655  45566666666666  56666666666666554  2455555555555443    335556666


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHH--------------------------------cCCH
Q 019340          229 WYLRAAEGGYVRAMYNTSLCYSF-GEGLPLSHRQARKWMKRAAD--------------------------------CGHG  275 (342)
Q Consensus       229 ~~~~A~~~~~~~a~~~lg~~y~~-g~g~~~~~~~A~~~~~~a~~--------------------------------~~~~  275 (342)
                      .+.++.-.+.-.+...|..+-.. ..|   +.++|...+.+|++                                .+++
T Consensus       741 ildrarlkNPk~~~lwle~Ir~ElR~g---n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp  817 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLESIRMELRAG---NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP  817 (913)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence            66665544333333333333211 122   55555555555544                                1345


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      ..+..+|.+++....+++|..||.+|+..++  .|+...  ++.-.+..+..++-.++++.+-.-.|.|
T Consensus       818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~--fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW--FYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH--HHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            5678899999999999999999999998753  333322  1222222344444556666666555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.04  E-value=2.4e-07  Score=89.87  Aligned_cols=215  Identities=16%  Similarity=0.080  Sum_probs=159.6

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .||+++|...+...+.+.  ++.+++.||.||...||.+++....-.|+.+  ++.+-|..++....  +.+++.+|.-|
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~--~~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE--QLGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--hcccHHHHHHH
Confidence            489999999999999975  8899999999999999999999999998754  88899999999999  89999999999


Q ss_pred             HHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHcCCCCcccHHHHHH
Q 019340          194 LYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VR------AMYNTSLCYSFGEGLPLSHRQARK  264 (342)
Q Consensus       194 ~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-~~------a~~~lg~~y~~g~g~~~~~~~A~~  264 (342)
                      |.+|++..  +-+..++-..+|..    .++...|...|.+.+.... .+      .-+..+..+..    ..+.+.|++
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~----~~~~e~a~~  301 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT----HNERERAAK  301 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH----hhHHHHHHH
Confidence            99999865  55666777888876    6788999999988877543 11      11111111111    001233333


Q ss_pred             HHHHHHHc------------------------------------------------------------------------
Q 019340          265 WMKRAADC------------------------------------------------------------------------  272 (342)
Q Consensus       265 ~~~~a~~~------------------------------------------------------------------------  272 (342)
                      .++.++..                                                                        
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            33222220                                                                        


Q ss_pred             ------------------------------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-CcHHHHHHHHHHHhhcC
Q 019340          273 ------------------------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQLS  321 (342)
Q Consensus       273 ------------------------------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~~~~~~~~~~  321 (342)
                                                    .++.-++.++.+|.+.|++.+|+.+|...+.. +...+-..+.....++.
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence                                          01223578888888899999999999999876 33444445555556677


Q ss_pred             hhcHHHHHHHHHhhhcCCCCC
Q 019340          322 ATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       322 ~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      .+..++|+..+..++...|.+
T Consensus       462 l~e~e~A~e~y~kvl~~~p~~  482 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILAPDN  482 (895)
T ss_pred             HhhHHHHHHHHHHHHhcCCCc
Confidence            799999999999999988864

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.01  E-value=7.9e-08  Score=88.28  Aligned_cols=199  Identities=16%  Similarity=0.035  Sum_probs=144.6

Q ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340          134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQ  206 (342)
Q Consensus       134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~  206 (342)
                      .+.+.++..+|.++...++.+.+...+.++...     +..+..+..+.++.  ..+++++|+.+++++++.  ++..++
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~--~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW--IAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            356788999999999999999998888887744     34567777788888  788999999999998874  456555


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG  282 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  282 (342)
                      .. +..+..-....+....+.+.+......  +...+...+|.++.. .|   ++++|...++++++.  +++.++..+|
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~G---~~~~A~~~~~~al~~~p~~~~~~~~la  155 (355)
T cd05804          81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE-AG---QYDRAEEAARRALELNPDDAWAVHAVA  155 (355)
T ss_pred             HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            53 433332111133445555555442222  345566778888854 33   999999999999986  5577889999


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcCc--HH--HHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          283 LGLFTEGEMMKAVVYLELATRAGE--TA--ADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~~--~~--a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      .++...|++++|..+++++++..+  +.  ..........++..++.++|.+.+++.....
T Consensus       156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~  216 (355)
T cd05804         156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS  216 (355)
T ss_pred             HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence            999999999999999999998753  22  2223344555677799999999998875443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.97  E-value=4.6e-08  Score=86.90  Aligned_cols=197  Identities=19%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHH
Q 019340          119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A  190 (342)
                      .|+++|...|.+|+            .+|...+++++|...|.++++.    ++    ..++...+.+|.  . .++.+|
T Consensus        29 ~~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~-~~~~~A   93 (282)
T PF14938_consen   29 PDYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--K-GDPDEA   93 (282)
T ss_dssp             HHHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--H-TTHHHH
T ss_pred             CCHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--h-hCHHHH
Confidence            47888888888744            4666777778888888777633    33    345556667766  2 288888


Q ss_pred             HHHHHHHHH----cCC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC
Q 019340          191 VKLLYQASI----AGH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGE  253 (342)
Q Consensus       191 ~~~~~~a~~----~~~----~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~  253 (342)
                      +.+|+++++    .|.    +..+.++|.+|..    . +++++|+++|++|++.    +.    ......++.++.. .
T Consensus        94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l  168 (282)
T PF14938_consen   94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-L  168 (282)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-h
Confidence            888888876    343    4567788888876    4 6888899999888874    22    3455677888755 2


Q ss_pred             CCcccHHHHHHHHHHHHHcC------C--H-HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-----cHHHHHHHH--HHH
Q 019340          254 GLPLSHRQARKWMKRAADCG------H--G-KAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKN--VIL  317 (342)
Q Consensus       254 g~~~~~~~A~~~~~~a~~~~------~--~-~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~~~--~~~  317 (342)
                         +++++|+..|++.+..-      .  . ..++..+.+++..||...|...+++.....     ..+......  ...
T Consensus       169 ---~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~  245 (282)
T PF14938_consen  169 ---GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY  245 (282)
T ss_dssp             ---T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence               38999999999887631      1  1 234677888888999999999999887653     333333322  233


Q ss_pred             hhcChhcHHHHHHHHHhhhcC
Q 019340          318 QQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       318 ~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      ...+...+..+...+.++.++
T Consensus       246 ~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  246 EEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HTT-CCCHHHHCHHHTTSS--
T ss_pred             HhCCHHHHHHHHHHHcccCcc
Confidence            333555566665555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=1.2e-07  Score=93.32  Aligned_cols=128  Identities=9%  Similarity=0.015  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA  210 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg  210 (342)
                      .+++++++||.+....|++++|..+++.+++.  ++..|..+++.++.  ..+.+++|+.++++++.  ++++.+++.+|
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~--~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK--RQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            46788888888888888888888888888755  78888888888888  78888888888888766  46788888888


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          211 LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       211 ~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      .++..    .+.+++|+.+|++++..  +++.++.++|.++.. .|   +.++|...|++|++.
T Consensus       162 ~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G---~~~~A~~~~~~a~~~  217 (694)
T PRK15179        162 KSWDE----IGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RG---ALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHh
Confidence            88877    66788888888888754  457788888888743 33   788888888888776

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.95  E-value=1.4e-08  Score=80.03  Aligned_cols=94  Identities=20%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      -+..|.+|..+.+    .|++++|..+|+..+..+  +...+++||.++...|++++|+..|.+|+..  ++|.+++++|
T Consensus        35 l~~lY~~A~~ly~----~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag  110 (157)
T PRK15363         35 LNTLYRYAMQLME----VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            3456666666666    367777777777776653  6667777777777777777777777776644  6777777777


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      .|++  ..|+.+.|.+.|+.++..
T Consensus       111 ~c~L--~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        111 ECYL--ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHH--HcCCHHHHHHHHHHHHHH
Confidence            7777  677777777777777653

>PLN03077 Protein ECB2; Provisional

Probab=98.95  E-value=3.2e-07  Score=94.17  Aligned_cols=205  Identities=9%  Similarity=-0.044  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLY  195 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~  195 (342)
                      ++.+.|.+++....+.|   +...+..|...|...|++++|.+.|++... .+...|..+...|.  ..+++++|+..|+
T Consensus       302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~--~~g~~~~A~~lf~  378 (857)
T PLN03077        302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYE--KNGLPDKALETYA  378 (857)
T ss_pred             CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHH--hCCCHHHHHHHHH
Confidence            34455555555554443   455566666677777777777777766432 34556666666666  6677777777777


Q ss_pred             HHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340          196 QASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA  269 (342)
Q Consensus       196 ~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  269 (342)
                      +..+.+   +...+..+=..+..    .++.++|.+.+..+.+.|   +...+..|..+|...    ++.++|.+.|++.
T Consensus       379 ~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~----g~~~~A~~vf~~m  450 (857)
T PLN03077        379 LMEQDNVSPDEITIASVLSACAC----LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC----KCIDKALEVFHNI  450 (857)
T ss_pred             HHHHhCCCCCceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc----CCHHHHHHHHHhC
Confidence            665543   22222222222322    456777777777777764   445666677777542    2788888888775


Q ss_pred             HHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          270 ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       270 ~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      .+ .+...+..+...|...|+.++|+..|++....-.++.......+......++.+.+.++...+
T Consensus       451 ~~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~  515 (857)
T PLN03077        451 PE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV  515 (857)
T ss_pred             CC-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence            43 345567777788888888888888888887654555555555555444445555555444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.95  E-value=2.3e-08  Score=78.44  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=56.1

Q ss_pred             HHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340          127 SFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--  200 (342)
Q Consensus       127 ~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--  200 (342)
                      +|++++..+  +..+.+.+|..+...|++++|+.++++++..  .++.+++++|.++.  ..+++.+|+.+|+++++.  
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ--MLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence            344444442  4445555555555555666666555555442  44555555555555  455555555555555443  


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .++..++.+|.+|..    .+++++|+.+|+++++.
T Consensus        83 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        83 DDPRPYFHAAECLLA----LGEPESALKALDLAIEI  114 (135)
T ss_pred             CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            245555555555554    44555555555555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.94  E-value=1.6e-08  Score=79.70  Aligned_cols=95  Identities=15%  Similarity=0.042  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~  211 (342)
                      .-+..+.+|..+...|++++|+..|+-.+.  ..++..+++||.++.  ..+++++|+..|.+++.  +++|++++++|.
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q--~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ--AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            446678899999999999999999999864  478899999999999  89999999999999866  468999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      |+..    .++.+.|.+.|+.|+..
T Consensus       112 c~L~----lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        112 CYLA----CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHH----cCCHHHHHHHHHHHHHH
Confidence            9988    67899999999988764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.92  E-value=6.1e-08  Score=94.65  Aligned_cols=257  Identities=15%  Similarity=0.055  Sum_probs=159.5

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKE  154 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~  154 (342)
                      ..++++.|...+-...++.+....-+.+..+|..|..    +++.-+|+.+|+.|+..+  +...+..||.+|.+.|++.
T Consensus       538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~  613 (1238)
T KOG1127|consen  538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS  613 (1238)
T ss_pred             ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence            3455555555544444444333233444557777777    678888888888888764  7778888888888888888


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc---------CCHHHHHH---------------
Q 019340          155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA---------GHVRAQYQ---------------  208 (342)
Q Consensus       155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~---------------  208 (342)
                      .|++.|.+|...  .+.-+.|..+.+.-  +.|.+.+|+..+...+..         |..+.+..               
T Consensus       614 ~AlKvF~kAs~LrP~s~y~~fk~A~~ec--d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav  691 (1238)
T KOG1127|consen  614 HALKVFTKASLLRPLSKYGRFKEAVMEC--DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV  691 (1238)
T ss_pred             hHHHhhhhhHhcCcHhHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            888888887655  33344444444433  444444444444433221         11111111               


Q ss_pred             ---------------------------HHHHH----------------------hcCCCCCCCH---HHHHHHHHHHHHC
Q 019340          209 ---------------------------LALCL----------------------HRGRGVDFNL---QEAARWYLRAAEG  236 (342)
Q Consensus       209 ---------------------------lg~~~----------------------~~g~~~~~~~---~~A~~~~~~A~~~  236 (342)
                                                 +|..+                      ..+.+..++.   --+.+++-..+..
T Consensus       692 d~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl  771 (1238)
T KOG1127|consen  692 DFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL  771 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH
Confidence                                       11110                      0111111111   2233333333333


Q ss_pred             -CCHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          237 -GYVRAMYNTSLCYSF-----GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       237 -~~~~a~~~lg~~y~~-----g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                       .++..|+|||.-|.+     +. ...+...|+.++++++..  ++..-+..||.+ ...|++.-|.++|-++.-..+..
T Consensus       772 ~~~~~~WyNLGinylr~f~~l~e-t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~  849 (1238)
T KOG1127|consen  772 AIHMYPWYNLGINYLRYFLLLGE-TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC  849 (1238)
T ss_pred             hhccchHHHHhHHHHHHHHHcCC-cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc
Confidence             346678999887754     22 234556899999999876  556677888886 66689999999999998888777


Q ss_pred             HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          309 ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       309 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ...-.+.....+...+.+.|....+..+.+.|.
T Consensus       850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~  882 (1238)
T KOG1127|consen  850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL  882 (1238)
T ss_pred             hhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence            777666677778888899998888888877764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.91  E-value=1.2e-06  Score=76.65  Aligned_cols=232  Identities=17%  Similarity=0.121  Sum_probs=179.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.-++.||.-+..    .+++..|+..|..|++.+  +..+.+.-|..|+..|+..-|+.=+.+++++  +...|-..-
T Consensus        37 dvekhlElGk~lla----~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   37 DVEKHLELGKELLA----RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHHH----hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            55678889988877    589999999999999964  6678899999999999999999999999877  667888889


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcC--------CCCCCCHHHHHHHHHHHHHCCC--HH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRG--------RGVDFNLQEAARWYLRAAEGGY--VR  240 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g--------~~~~~~~~~A~~~~~~A~~~~~--~~  240 (342)
                      |.+++  ..|.++.|..-|.+.++.+     .-+++-.|+.+-..-        ....+|..-++.+....++...  +.
T Consensus       113 g~vll--K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~  190 (504)
T KOG0624|consen  113 GVVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS  190 (504)
T ss_pred             chhhh--hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence            99999  8999999999999998853     345665555443321        0114588999999999998864  44


Q ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH--------
Q 019340          241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD--------  310 (342)
Q Consensus       241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~--------  310 (342)
                      -+...+.||.. .|   ++.+|+.-++.+...  ++.+.+|.+..+++..|+.+.++.-.+.-+.+++..-.        
T Consensus       191 l~~~Rakc~i~-~~---e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl  266 (504)
T KOG0624|consen  191 LRQARAKCYIA-EG---EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL  266 (504)
T ss_pred             HHHHHHHHHHh-cC---cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence            45567788854 33   899999999999775  77899999999999999999999999999888765421        


Q ss_pred             ----HHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          311 ----HVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       311 ----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                          -.+..+........+.+..+..+.+++..|+
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~  301 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE  301 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence                1122333444556666777777777666664

>PLN03077 Protein ECB2; Provisional

Probab=98.90  E-value=6.1e-07  Score=92.11  Aligned_cols=241  Identities=10%  Similarity=-0.043  Sum_probs=160.6

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH-----------------
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST-----------------  137 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~-----------------  137 (342)
                      ..|+..+|..++....    . ++...+..+-..|..    .++.++|+.+|++....-  +.                 
T Consensus       436 k~g~~~~A~~vf~~m~----~-~d~vs~~~mi~~~~~----~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~  506 (857)
T PLN03077        436 KCKCIDKALEVFHNIP----E-KDVISWTSIIAGLRL----NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM  506 (857)
T ss_pred             HcCCHHHHHHHHHhCC----C-CCeeeHHHHHHHHHH----CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence            5567777765443321    1 234444444445544    367777777777765421  11                 


Q ss_pred             ------------------HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          138 ------------------LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       138 ------------------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                                        .....|-..|.+.|++++|...|...  ..+...|..+...|.  ..|+.++|+..|++..+
T Consensus       507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~--~~G~~~~A~~lf~~M~~  582 (857)
T PLN03077        507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYV--AHGKGSMAVELFNRMVE  582 (857)
T ss_pred             HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence                              12223446777788888888888876  567777888877777  78888999999988777


Q ss_pred             cC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          200 AG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-GG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       200 ~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      .|   +...+..+-..|..    .++.++|.++|+...+ .+   +...+..+..+|.+. |   +.++|.+++++..-.
T Consensus       583 ~g~~Pd~~T~~~ll~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G---~~~eA~~~~~~m~~~  654 (857)
T PLN03077        583 SGVNPDEVTFISLLCACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-G---KLTEAYNFINKMPIT  654 (857)
T ss_pred             cCCCCCcccHHHHHHHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-C---CHHHHHHHHHHCCCC
Confidence            54   33344444344444    4578889999988873 33   445666777777552 2   889999888876434


Q ss_pred             CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          273 GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       273 ~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      .+...|..|-..+...++.+.+....++.+++.+.+...+..+...+...++++++.++.+..+..
T Consensus       655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence            556667666667777888888888888888887776666555555556678888888888877543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.90  E-value=1.8e-07  Score=93.20  Aligned_cols=205  Identities=10%  Similarity=-0.032  Sum_probs=117.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHH-----------------H
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL-----------------Y  160 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~-----------------~  160 (342)
                      +..++..|...|..    .+++++|+...+.+++.  +....++.+|.++...+++.++.-.                 |
T Consensus        30 n~~a~~~Li~~~~~----~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         30 KFKELDDLIDAYKS----ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI  105 (906)
T ss_pred             hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence            44555666666644    25666666666655554  3455566666666555444433333                 2


Q ss_pred             HH-HHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          161 RQ-AAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       161 ~~-a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+ ..+. .+..|++.||.||.  ..++.++++..|+++++.  .++.+.+++|..|..    . |.++|+.++.+|+..
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Yd--k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYA--KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH
Confidence            22 2222 34468888888888  788888888888888774  578888888888876    4 888888888888753


Q ss_pred             C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CC---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          237 G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       237 ~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      -     +....-....++..   .+.+.+.=.+..++.... +.   ...+.-|=..|...+++++++.+++++++..+.
T Consensus       179 ~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~  255 (906)
T PRK14720        179 FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK  255 (906)
T ss_pred             HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence            1     11111111111111   011333333333333222 11   222334445566677888888888888888765


Q ss_pred             HHHHHHHHHHh
Q 019340          308 AADHVKNVILQ  318 (342)
Q Consensus       308 ~a~~~~~~~~~  318 (342)
                      +......++..
T Consensus       256 n~~a~~~l~~~  266 (906)
T PRK14720        256 NNKAREELIRF  266 (906)
T ss_pred             chhhHHHHHHH
Confidence            55444444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.90  E-value=3.4e-08  Score=77.47  Aligned_cols=96  Identities=23%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+.+.+|.++..    .+++++|+.+|++++..  .++.+++.+|.++...|++++|+.+|++++..  .++..++++
T Consensus        16 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        16 QLEQIYALAYNLYQ----QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             hHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            67888999999998    58999999999999886  47899999999999999999999999999865  678999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      |.+|.  ..+++++|+.+|+++++..
T Consensus        92 a~~~~--~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        92 AECLL--ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHhc
Confidence            99999  8899999999999998764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.1e-07  Score=83.01  Aligned_cols=250  Identities=12%  Similarity=-0.008  Sum_probs=176.9

Q ss_pred             hhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 019340           74 ASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD  151 (342)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~  151 (342)
                      ..|...++..|...+-..++..++  ++..+..-+.++..    .+++++|.-..++.+..  +....+..++.++...+
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~----~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMM----LGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS  131 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHH----HHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence            356667777887777777777666  57777777777766    47888999888888876  56677888888888888


Q ss_pred             CHHHHHHHHHHHH---------------hCCC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340          152 KKEAAISLYRQAA---------------VLGD-----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL  209 (342)
Q Consensus       152 ~~~~A~~~~~~a~---------------~~~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  209 (342)
                      +..+|.+.|+...               ....     ..+...-+.|+.  ..+++.+|+..-...+++  .+.++.+.-
T Consensus       132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~--~~~~~~~a~~ea~~ilkld~~n~~al~vr  209 (486)
T KOG0550|consen  132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLA--FLGDYDEAQSEAIDILKLDATNAEALYVR  209 (486)
T ss_pred             HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh--hcccchhHHHHHHHHHhcccchhHHHHhc
Confidence            8888887766321               0001     123333445555  567777777766666655  477888888


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-
Q 019340          210 ALCLHRGRGVDFNLQEAARWYLRAAEGGYV--------------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-  274 (342)
Q Consensus       210 g~~~~~g~~~~~~~~~A~~~~~~A~~~~~~--------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-  274 (342)
                      |.|++.    ..+.++|+..|++++..+..              ..+-.-|.-... .|   ++.+|.++|..|+..++ 
T Consensus       210 g~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G---~y~~A~E~Yteal~idP~  281 (486)
T KOG0550|consen  210 GLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NG---NYRKAYECYTEALNIDPS  281 (486)
T ss_pred             cccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-cc---chhHHHHHHHHhhcCCcc
Confidence            888877    67889999999999876521              122223333322 23   88899999999987633 


Q ss_pred             -----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          275 -----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       275 -----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                           +..+.+.+.+....|+..+|+.--..|+.+++.-...++.....++..+++++|.+-++...+..
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                 44567888888889999999999999988887777777777777777788888887777665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.86  E-value=3.1e-07  Score=77.57  Aligned_cols=170  Identities=15%  Similarity=0.072  Sum_probs=136.8

Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +...+-+....  ++.++ .++...+...|+-+.+..+..+++..  .+.+....+|....  ..+++..|+..+++++.
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~--~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI--RNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH--HhcchHHHHHHHHHHhc
Confidence            44444444443  46777 88889998899999999988887655  45556666888887  88999999999999887


Q ss_pred             c--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--C
Q 019340          200 A--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--G  273 (342)
Q Consensus       200 ~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~  273 (342)
                      .  .+.+++..+|.+|.+    .++.+.|..-|.+|++.  +.+....|||.+|.-    ..|++.|..++..+...  .
T Consensus       129 l~p~d~~~~~~lgaaldq----~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQ----LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             cCCCChhhhhHHHHHHHH----ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHHHHhCCCC
Confidence            5  589999999999998    77899999999999886  688899999999864    33999999999999776  4


Q ss_pred             CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          274 HGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       274 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +.....||+.+....|++.+|...-..-+..
T Consensus       201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~  231 (257)
T COG5010         201 DSRVRQNLALVVGLQGDFREAEDIAVQELLS  231 (257)
T ss_pred             chHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence            6777789999999999999998776654443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.83  E-value=1.9e-06  Score=82.50  Aligned_cols=225  Identities=17%  Similarity=0.074  Sum_probs=135.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC-----
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD-----  168 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~-----  168 (342)
                      ..|+.+.|.|+.-|..    .++.+.|.++.+++++.   .++.++..|+.++...+++.+|+.....+++. ++     
T Consensus       475 ~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~  550 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAE----QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM  550 (799)
T ss_pred             CCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence            3478899999999988    58999999999999997   38899999999999999999999998888753 22     


Q ss_pred             ------------HHHHH-----HHH-------------HHHH---c-C---CccCHHHHHHHHHHHHH------------
Q 019340          169 ------------PAGQF-----NLG-------------ISYL---Q-A---QPANAEEAVKLLYQASI------------  199 (342)
Q Consensus       169 ------------~~a~~-----~Lg-------------~~~~---~-g---~~~~~~~A~~~~~~a~~------------  199 (342)
                                  ++...     .|+             ..-.   . |   ...+..+|++.++++..            
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se  630 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE  630 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence                        11100     000             0000   0 0   12344445554444321            


Q ss_pred             ---------cCC-------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHH
Q 019340          200 ---------AGH-------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       200 ---------~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                               ++.       -.-+...+..+..    .++.+++..++.+|....  .+..|+..|.++..    .....+
T Consensus       631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~----~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~----~~~~~E  702 (799)
T KOG4162|consen  631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL----SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV----KGQLEE  702 (799)
T ss_pred             cccCcccccCCCCchHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH----HHhhHH
Confidence                     010       0123344444444    335556666666655442  44556666666643    226666


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHH--HHHHHHHcC--cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVV--YLELATRAG--ETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~--~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      |...|..|+..  +|+.+...||.++...|+..-|.+  .++-|++.+  +++++++++.+...+  |+.++|.+.++-.
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~--Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL--GDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cchHHHHHHHHHH
Confidence            66666666543  556666666666666666655555  666666664  456666666655444  5555555555444


Q ss_pred             h
Q 019340          336 R  336 (342)
Q Consensus       336 ~  336 (342)
                      .
T Consensus       781 ~  781 (799)
T KOG4162|consen  781 L  781 (799)
T ss_pred             H
Confidence            3

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.83  E-value=1.3e-05  Score=70.36  Aligned_cols=259  Identities=11%  Similarity=0.006  Sum_probs=174.2

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM  146 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~  146 (342)
                      ++....++..+++..|...+-...+.-+  .+..+.|.-|.+|..    .|.-+-|+.-+.+.+++  +...+...-|.+
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLA----mGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLA----MGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhh----hcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            4555567778888888765544444332  366788888888887    45666788888888876  456677888888


Q ss_pred             HhcCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHH----------cCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340          147 YWEMDKKEAAISLYRQAAVLGD-----PAGQFNLGISYL----------QAQPANAEEAVKLLYQASIA--GHVRAQYQL  209 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~----------~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  209 (342)
                      ++..|.+++|+.=|+++++.+.     -+++-.|+.+-.          ....||...++.+..+.++-  -++..+-.-
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R  195 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR  195 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence            8888999999998888886532     344444443311          11357788888888877764  355555566


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------------
Q 019340          210 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------------  272 (342)
Q Consensus       210 g~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------  272 (342)
                      +.||..    .++..+|+.-++.+..+  ++.+++|.++.++. ..|   |.+.++.-.+.++..               
T Consensus       196 akc~i~----~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y-~vg---d~~~sL~~iRECLKldpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  196 AKCYIA----EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY-TVG---DAENSLKEIRECLKLDPDHKLCFPFYKKLK  267 (504)
T ss_pred             HHHHHh----cCcHHHHHHHHHHHHhccccchHHHHHHHHHHH-hhh---hHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence            777776    56778888888777665  56777777777763 233   444444444443332               


Q ss_pred             ---------------CCHHHH----------------------HHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340          273 ---------------GHGKAQ----------------------LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV  315 (342)
Q Consensus       273 ---------------~~~~a~----------------------~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~  315 (342)
                                     ++...+                      --+..++...+++.+|+.-...+++..+.++..+...
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR  347 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR  347 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence                           111111                      1233344446788899999999999998888888888


Q ss_pred             HHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          316 ILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       316 ~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ...++-..+++.|++-++.....+++
T Consensus       348 AeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  348 AEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            88888888888888877776665554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.83  E-value=7.9e-07  Score=75.13  Aligned_cols=174  Identities=20%  Similarity=0.086  Sum_probs=132.3

Q ss_pred             hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHH
Q 019340           79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      .+...+..-..+....  ..++..+ +.+...+..    .++-+.+.....+++...  +...+..+|......|++..|
T Consensus        47 ~q~~~a~~al~~~~~~--~p~d~~i-~~~a~a~~~----~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A  119 (257)
T COG5010          47 RQTQGAAAALGAAVLR--NPEDLSI-AKLATALYL----RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEA  119 (257)
T ss_pred             HhhhHHHHHHHHHHhc--CcchHHH-HHHHHHHHh----cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHH
Confidence            3444444333333322  3335556 666666655    467777777777766543  555666699999999999999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340          157 ISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR  232 (342)
Q Consensus       157 ~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  232 (342)
                      +..+++++..  .|.+++..+|.+|.  ..|+++.|..-|.++++.  +.+.+..|||..|..    .+|++.|..++.+
T Consensus       120 ~~~~rkA~~l~p~d~~~~~~lgaald--q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L----~gd~~~A~~lll~  193 (257)
T COG5010         120 VSVLRKAARLAPTDWEAWNLLGAALD--QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL----RGDLEDAETLLLP  193 (257)
T ss_pred             HHHHHHHhccCCCChhhhhHHHHHHH--HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH----cCCHHHHHHHHHH
Confidence            9999999866  88999999999999  899999999999999874  689999999999986    7899999999999


Q ss_pred             HHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340          233 AAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA  269 (342)
Q Consensus       233 A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  269 (342)
                      +....  +...-.||+.+. ...|   ++.+|...-..=
T Consensus       194 a~l~~~ad~~v~~NLAl~~-~~~g---~~~~A~~i~~~e  228 (257)
T COG5010         194 AYLSPAADSRVRQNLALVV-GLQG---DFREAEDIAVQE  228 (257)
T ss_pred             HHhCCCCchHHHHHHHHHH-hhcC---ChHHHHhhcccc
Confidence            98773  677788888887 3344   888887765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.81  E-value=4.1e-07  Score=90.71  Aligned_cols=184  Identities=9%  Similarity=0.024  Sum_probs=137.1

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHH-----------------HHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAE-----------------EAVKLLY  195 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~-----------------~A~~~~~  195 (342)
                      ++..++..|..+|...+++++|+..++.+++.  +....++.+|.++..  .+++.                 .++.+|.
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q--~~~~~~~~lv~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS--RRPLNDSNLLNLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh--hcchhhhhhhhhhhhcccccchhHHHHHH
Confidence            47789999999999999999999999988765  778999999998883  33333                 3333333


Q ss_pred             H-HHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          196 Q-ASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       196 ~-a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      . ..+- ++..|++.||.||..    .++.++|...|+++++.  .++.++.++|..|..    . |.++|+.++++|+.
T Consensus       107 ~~i~~~~~~k~Al~~LA~~Ydk----~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        107 DKILLYGENKLALRTLAEAYAK----LNENKKLKGVWERLVKADRDNPEIVKKLATSYEE----E-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHH
Confidence            3 2222 345799999999988    77899999999999987  588999999999975    3 99999999999987


Q ss_pred             cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH--------------------HHHHHHhhcChhcHHHHHHH
Q 019340          272 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH--------------------VKNVILQQLSATSRDRAMLV  331 (342)
Q Consensus       272 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~--------------------~~~~~~~~~~~~~~~~a~~~  331 (342)
                      .            |...+++.++.+++++.++..+.+...                    ...+...+....+++++..+
T Consensus       178 ~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        178 R------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             H------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            5            444556666666666666555443332                    22233444566778888888


Q ss_pred             HHhhhcCCCC
Q 019340          332 VDSWRAMPSL  341 (342)
Q Consensus       332 ~~~~~~~~~~  341 (342)
                      ++.+++..|.
T Consensus       246 LK~iL~~~~~  255 (906)
T PRK14720        246 LKKILEHDNK  255 (906)
T ss_pred             HHHHHhcCCc
Confidence            8888877654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=1.3e-06  Score=79.85  Aligned_cols=145  Identities=21%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      +...++|..+..+..    .+++++|...+...+..  +|+..+-..+.++.+.++.++|++.+++++.+  +.+-...+
T Consensus       304 ~~~aa~YG~A~~~~~----~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         304 GGLAAQYGRALQTYL----AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             cchHHHHHHHHHHHH----hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHH
Confidence            567888988888888    58899999999887664  68888889999999999999999999999876  55788899


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG  252 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g  252 (342)
                      +|.+|+  ..+++.+|+..+.+...  ++++..|..|+..|..    .+|..++...+-.               .|.. 
T Consensus       380 ~a~all--~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~----~g~~~~a~~A~AE---------------~~~~-  437 (484)
T COG4783         380 LAQALL--KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE----LGNRAEALLARAE---------------GYAL-  437 (484)
T ss_pred             HHHHHH--hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH----hCchHHHHHHHHH---------------HHHh-
Confidence            999999  77888899999998776  4689999999999986    5555555544433               3322 


Q ss_pred             CCCcccHHHHHHHHHHHHHc
Q 019340          253 EGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~~  272 (342)
                         ..++++|+..+..|.+.
T Consensus       438 ---~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         438 ---AGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             ---CCCHHHHHHHHHHHHHh
Confidence               22788888888888765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.81  E-value=7.2e-06  Score=78.19  Aligned_cols=255  Identities=11%  Similarity=0.001  Sum_probs=163.9

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLM  146 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~  146 (342)
                      +-+..-+...|++.+|...+....+...+  ....+-..|.++..    .|+.++|...|+..++.+  +...+..|..+
T Consensus         8 LY~~~il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~k----Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~   81 (517)
T PF12569_consen    8 LYKNSILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLK----LGRKEEAEKIYRELIDRNPDNYDYYRGLEEA   81 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            33334444567777776555544444433  44555556666666    467777777777777764  33444444444


Q ss_pred             Hhc-----CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCccCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 019340          147 YWE-----MDKKEAAISLYRQAAVLG-DPAGQFNLGISYLQAQPANAE-EAVKLLYQASIAGHVRAQYQLALCLHRGRGV  219 (342)
Q Consensus       147 ~~~-----~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~g~~~~~~-~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~  219 (342)
                      ...     ..+.+.-..+|......- -..+.-.+...+..|  .++. .+-.|+...+..|.|....+|-.+|..    
T Consensus        82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g--~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d----  155 (517)
T PF12569_consen   82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG--DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD----  155 (517)
T ss_pred             HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC----
Confidence            311     124555566666554432 122222333333322  2343 344455567778888888888888764    


Q ss_pred             CCCHHHHHHHHHHHHH---C------------CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHH
Q 019340          220 DFNLQEAARWYLRAAE---G------------GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQ  278 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~---~------------~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~  278 (342)
                      +....--...+..-..   .            ..    ..+++.++..|.. .|   ++++|+.+..+|++..+  ++-+
T Consensus       156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g---~~~~Al~~Id~aI~htPt~~ely  231 (517)
T PF12569_consen  156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LG---DYEKALEYIDKAIEHTPTLVELY  231 (517)
T ss_pred             hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hC---CHHHHHHHHHHHHhcCCCcHHHH
Confidence            2111111122222111   0            01    2467889999954 44   99999999999999854  7889


Q ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          279 LEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      +..|.+|...|++++|..+++.|-.++..|-..|-...-..+..++.++|...+..+.+..
T Consensus       232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999888888888888889999999999999887654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3.7e-06  Score=75.31  Aligned_cols=227  Identities=13%  Similarity=0.006  Sum_probs=153.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHh-----------------------------
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYW-----------------------------  148 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~-----------------------------  148 (342)
                      +...+..+|.++..    .||.++|+.-|+++.-.+  ...++-..|.++.                             
T Consensus       231 NvhLl~~lak~~~~----~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  231 NEHLMMALGKCLYY----NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH  306 (564)
T ss_pred             cHHHHHHHhhhhhh----hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence            66777888988888    589999999999875442  2233322333332                             


Q ss_pred             -----cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCC
Q 019340          149 -----EMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGV  219 (342)
Q Consensus       149 -----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~  219 (342)
                           ..++++.|+.+-+|+++.  .+..++..-|.++.  ..+++++|+-.|+.+....  .-+.+-.|-.||.-    
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~--~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA----  380 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI--ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA----  380 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH--hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh----
Confidence                 335666666666666644  55666666677766  6667777777777766543  45566666666665    


Q ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHH-HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340          220 DFNLQEAARWYLRAAEG--GYVRAMYNTS-LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA  294 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg-~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A  294 (342)
                      .+.+++|...-+.+...  .++.+...+| .++..   .+.--++|.+++++++.+  +...+-..++.++..+|.++++
T Consensus       381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~---dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP---DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             hchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc---CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence            44566666666665553  4566666665 33332   244678999999999876  5688889999999999999999


Q ss_pred             HHHHHHHHHcCcHH-HHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          295 VVYLELATRAGETA-ADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       295 ~~~~~~a~~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      +..+++++..-++. -+..++-++.  ...+..++...+...+.++|.
T Consensus       458 i~LLe~~L~~~~D~~LH~~Lgd~~~--A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  458 IKLLEKHLIIFPDVNLHNHLGDIMR--AQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCcc
Confidence            99999998765444 4445555554  346777788877777666663

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.79  E-value=2e-05  Score=75.74  Aligned_cols=257  Identities=14%  Similarity=0.065  Sum_probs=172.7

Q ss_pred             hhHHhhHHHHHHHHHH---hCcCCCHHHHHHHHHHHHcCCCCcC-------CHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340           79 PQLRAASLVCKSWNDA---LRPLREAMVLLRWGKRFKHGRGVRK-------NLDKALDSFLKGAAR--GSTLAMVDAGLM  146 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~---~~~~~~a~a~~~lg~~y~~g~g~~~-------~~~~A~~~~~~A~~~--~~~~a~~~lg~~  146 (342)
                      +...++.....+.+..   ....-.+.+++.+|++|-.......       -..++++.+++|++.  .|+.+.+.++.-
T Consensus       408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq  487 (799)
T KOG4162|consen  408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ  487 (799)
T ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            4444554443443331   1223356789999999876332211       255689999999886  489999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CC-----------------HHH
Q 019340          147 YWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-GH-----------------VRA  205 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~-----------------~~a  205 (342)
                      |...++.+.|..+.+.+++.   .++.+|..|+.++-  ..+++..|+....-+++. ++                 ++.
T Consensus       488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS--a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~  565 (799)
T KOG4162|consen  488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS--AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE  565 (799)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence            99999999999999999877   67899999999988  788888888888877652 11                 111


Q ss_pred             -----HHHHHHHH---------hc--------CCC-CCCCHHHHHHHHHHHHHC--------C-------------C---
Q 019340          206 -----QYQLALCL---------HR--------GRG-VDFNLQEAARWYLRAAEG--------G-------------Y---  238 (342)
Q Consensus       206 -----~~~lg~~~---------~~--------g~~-~~~~~~~A~~~~~~A~~~--------~-------------~---  238 (342)
                           ...|+..-         .+        |.+ ...+..+|+..++++...        +             .   
T Consensus       566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~  645 (799)
T KOG4162|consen  566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL  645 (799)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence                 01111100         01        111 234666677666665421        1             1   


Q ss_pred             ----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHH
Q 019340          239 ----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAAD  310 (342)
Q Consensus       239 ----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~  310 (342)
                          ...|...+..+....    +.++|..|+.+|....+  +..++..|.++...|+.++|...|..|+..+|  +.+.
T Consensus       646 ~~~~~~lwllaa~~~~~~~----~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~  721 (799)
T KOG4162|consen  646 WYLLQKLWLLAADLFLLSG----NDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM  721 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence                123445666665533    88999999999987754  77789999999999999999999999988754  5566


Q ss_pred             HHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          311 HVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       311 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      +.++.++..+.....++++-+.....+..|.
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence            6666666555433444444477766665553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.79  E-value=4.5e-05  Score=68.20  Aligned_cols=248  Identities=15%  Similarity=-0.010  Sum_probs=167.4

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CC--HHHHHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS--TLAMVDAG  144 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~--~~a~~~lg  144 (342)
                      .+..+...+..|++.+|..+..++.+.   ...+...|.+|.--.++   .+|.+.|=.|..++++. ++  .......+
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~---~e~p~l~~l~aA~AA~q---rgd~~~an~yL~eaae~~~~~~l~v~ltra  160 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEH---GEQPVLAYLLAAEAAQQ---RGDEDRANRYLAEAAELAGDDTLAVELTRA  160 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhc---CcchHHHHHHHHHHHHh---cccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence            344555567889999998776665443   33566666676555554   68999999999999998 43  44556778


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---------------------
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---------------------  201 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---------------------  201 (342)
                      ++....||++.|..-..++.+.  .++++....-.+|.  ..|+......++.+..+.+                     
T Consensus       161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~--~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q  238 (400)
T COG3071         161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI--RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ  238 (400)
T ss_pred             HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH--HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence            8899999999999999998876  78888888888888  7777777766666554321                     


Q ss_pred             -----------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcc
Q 019340          202 -----------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPL  257 (342)
Q Consensus       202 -----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~  257 (342)
                                             +++....++.-+..    .++.++|.++.+.+++.. ++. .+.+--..     .+.
T Consensus       239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~----l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-----~~~  308 (400)
T COG3071         239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR----LGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-----RPG  308 (400)
T ss_pred             HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH----cCChHHHHHHHHHHHHhccChh-HHHHHhhc-----CCC
Confidence                                   12222222222222    456777888877777764 444 22222212     134


Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-HHHHHHHHhhcChhcHHHHHHHHHh
Q 019340          258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-DHVKNVILQQLSATSRDRAMLVVDS  334 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~  334 (342)
                      |+..=++..++.+..  +++..+..||.++...+.+.+|..+|+.|+...+... ...++-.+..+  ++..+|.++.++
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~--g~~~~A~~~r~e  386 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL--GEPEEAEQVRRE  386 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CChHHHHHHHHH
Confidence            666666666676665  5577789999999999999999999999999875433 33344444444  555556555544


Q ss_pred             h
Q 019340          335 W  335 (342)
Q Consensus       335 ~  335 (342)
                      -
T Consensus       387 ~  387 (400)
T COG3071         387 A  387 (400)
T ss_pred             H
Confidence            3

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.77  E-value=7.1e-06  Score=77.31  Aligned_cols=262  Identities=12%  Similarity=-0.009  Sum_probs=178.5

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      ....++...|..+++......++..+++-++.|+..|  ..|.....    .++-++|..+.+.++..  ....-|.-+|
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~----lg~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNC----LGKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhc----ccchHHHHHHHHHHhccCcccchhHHHHH
Confidence            4567778889999999999999999998777555444  45655443    57999999999999885  3556778899


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCC
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVD  220 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~  220 (342)
                      .++...+++++|+++|+.|+..  +|-..+.-|+.+-.  ..++++-......+.++..  .-..|..++..+..    .
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~--QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~  156 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI--QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----L  156 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----H
Confidence            9999999999999999999855  88889999988877  7888888777777776654  44445555555544    5


Q ss_pred             CCHHHHHHHHHHHHHCC----C-HHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340          221 FNLQEAARWYLRAAEGG----Y-VRAMYNTSLCYSFGEGL-PLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       221 ~~~~~A~~~~~~A~~~~----~-~~a~~~lg~~y~~g~g~-~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~  292 (342)
                      +++..|....+.-....    + -.--.....+|....-. ....++|.+.+..--..  +.......-+.++...++++
T Consensus       157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE  236 (700)
T KOG1156|consen  157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE  236 (700)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence            57777776665544322    1 11122233333211000 11355555555443221  22333456777889999999


Q ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhcCCC
Q 019340          293 KAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       293 ~A~~~~~~a~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +|...|...++.+|++-.++........ ...+......++...-.++|
T Consensus       237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~  285 (700)
T KOG1156|consen  237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP  285 (700)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence            9999999999999888887776666554 34444444456666655554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=4.4e-07  Score=86.29  Aligned_cols=202  Identities=16%  Similarity=0.018  Sum_probs=158.0

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCH
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKK  153 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~  153 (342)
                      ++..|=...|...+.+.          ..+-..-.||..    .++..+|..+..+-++. +++..+..+|.+.....=+
T Consensus       408 l~slGitksAl~I~Erl----------emw~~vi~CY~~----lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y  473 (777)
T KOG1128|consen  408 LLSLGITKSALVIFERL----------EMWDPVILCYLL----LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY  473 (777)
T ss_pred             HHHcchHHHHHHHHHhH----------HHHHHHHHHHHH----hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence            34556666665444332          333445677777    46888999999998884 4666666777776655445


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      ++|.++.++    -+..|.+.+|....  ..+++.++.+.|+.+++.  .....+|.+|.|..+    ..+++.|.++|.
T Consensus       474 EkawElsn~----~sarA~r~~~~~~~--~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av~aF~  543 (777)
T KOG1128|consen  474 EKAWELSNY----ISARAQRSLALLIL--SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHhhh----hhHHHHHhhccccc--cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHHHHHH
Confidence            555544433    23458888888877  689999999999998775  579999999999988    779999999999


Q ss_pred             HHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          232 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       232 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +++..  ++..+|.|++-.|..    .++..+|...+++|++-  ++...+.|.-.+-.+.|++++|+..|.+.++.
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            99876  789999999999975    44899999999999875  67778888888889999999999999998765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.75  E-value=2.5e-07  Score=84.84  Aligned_cols=95  Identities=13%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .+++++|+.+|.+|+..  +++.+++++|.+|...|++++|+..++++++.  .++.+++.+|.+|.  ..+++++|+.+
T Consensus        15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~--~lg~~~eA~~~   92 (356)
T PLN03088         15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM--KLEEYQTAKAA   92 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH--HhCCHHHHHHH
Confidence            47888888888888876  47778888888888888888888888888765  67788888888888  77888888888


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHh
Q 019340          194 LYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       194 ~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      |+++++.  +++.+...++.|..
T Consensus        93 ~~~al~l~P~~~~~~~~l~~~~~  115 (356)
T PLN03088         93 LEKGASLAPGDSRFTKLIKECDE  115 (356)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Confidence            8887764  57777777777743

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.75  E-value=5.2e-08  Score=86.42  Aligned_cols=253  Identities=13%  Similarity=0.045  Sum_probs=145.3

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcC
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEM  150 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~  150 (342)
                      .+...|..|++..+.....  .............+.+.+.|..    .|.++..+.-....- .....+...++..+...
T Consensus         7 ~vrn~fy~G~Y~~~i~e~~--~~~~~~~~~~e~~~~~~Rs~iA----lg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~   79 (290)
T PF04733_consen    7 TVRNQFYLGNYQQCINEAS--LKSFSPENKLERDFYQYRSYIA----LGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSP   79 (290)
T ss_dssp             HHHHHHCTT-HHHHCHHHH--CHTSTCHHHHHHHHHHHHHHHH----TT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred             HHHHHHHhhhHHHHHHHhh--ccCCCchhHHHHHHHHHHHHHH----cCChhHHHHHhccCC-ChhHHHHHHHHHHHhCc
Confidence            4555677788887764333  1111111122344445555555    345554443332211 12344555666666555


Q ss_pred             CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340          151 DKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      .+.++++.-++..+..    .++-.....|.++.  ..+++++|++.+.+.   ++.++....-.+|..    ..+.+.|
T Consensus        80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~--~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~----~~R~dlA  150 (290)
T PF04733_consen   80 SDKESALEELKELLADQAGESNEIVQLLAATILF--HEGDYEEALKLLHKG---GSLELLALAVQILLK----MNRPDLA  150 (290)
T ss_dssp             TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC--CCCHHHHHHCCCTTT---TCHHHHHHHHHHHHH----TT-HHHH
T ss_pred             cchHHHHHHHHHHHHhccccccHHHHHHHHHHHH--HcCCHHHHHHHHHcc---CcccHHHHHHHHHHH----cCCHHHH
Confidence            6667777666654432    23344444556666  677888888887765   667777777777776    5678888


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          227 ARWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       227 ~~~~~~A~~~~~~~a~~~lg~~y~---~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                      .+.++..-+.++-....+|+..+.   .|.   ..+.+|...|+...+.  ..+..++.++.++...|++++|...++.|
T Consensus       151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a  227 (290)
T PF04733_consen  151 EKELKNMQQIDEDSILTQLAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA  227 (290)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            888888766654444444444332   222   3788888888887765  34566677888888888888888888888


Q ss_pred             HHcCcHHHHHHHHHHHhh-cChhcHHHHHHHHHhhhcCCCCC
Q 019340          302 TRAGETAADHVKNVILQQ-LSATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       302 ~~~~~~~a~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      ++.++.+.....+.+... ..+...+.+.+...+++..+|.|
T Consensus       228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            877554444433333322 23333355667777777777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.74  E-value=1.5e-05  Score=75.39  Aligned_cols=213  Identities=16%  Similarity=0.033  Sum_probs=163.4

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      +-.+.-..++++|+..  .....++..+..++..||...|...+.+|.+...-.--..|+-+-..++...++.|..+|.+
T Consensus       564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak  643 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK  643 (913)
T ss_pred             CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            5567777788888885  34556677778888889999999999998876332333344444444477889999999988


Q ss_pred             HHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340          197 ASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-  272 (342)
Q Consensus       197 a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  272 (342)
                      +-.. +..+.++.-+.+-..    ..+.++|+++++++++.  .+..-+..+|+++..    ..+.+.|...|...... 
T Consensus       644 ar~~sgTeRv~mKs~~~er~----ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~----~~~ie~aR~aY~~G~k~c  715 (913)
T KOG0495|consen  644 ARSISGTERVWMKSANLERY----LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ----MENIEMAREAYLQGTKKC  715 (913)
T ss_pred             HhccCCcchhhHHHhHHHHH----hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH----HHHHHHHHHHHHhccccC
Confidence            7554 577777777766654    56789999999999886  577888889999965    33889999988888776 


Q ss_pred             -CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          273 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       273 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                       +...-+..|+.+-...|+..+|...+.++.-.+|.++...+..+.-.+..+..+.|..+..+.++.-
T Consensus       716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec  783 (913)
T KOG0495|consen  716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC  783 (913)
T ss_pred             CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             6677788888888888899999999999988888888888888888888888888888655544433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.74  E-value=6.9e-07  Score=79.38  Aligned_cols=168  Identities=20%  Similarity=0.211  Sum_probs=125.7

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC
Q 019340          151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN  222 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~  222 (342)
                      .|+++|...|.+|+            .+|.  ..+++++|..+|.++++.    ++    ..++...+.+|..     .+
T Consensus        29 ~~~e~Aa~~y~~Aa------------~~fk--~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----~~   89 (282)
T PF14938_consen   29 PDYEEAADLYEKAA------------NCFK--LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----GD   89 (282)
T ss_dssp             HHHHHHHHHHHHHH------------HHHH--HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT
T ss_pred             CCHHHHHHHHHHHH------------HHHH--HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----hC
Confidence            48999999888875            4455  667888888888887652    22    3556778888876     28


Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhh
Q 019340          223 LQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLF  286 (342)
Q Consensus       223 ~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~  286 (342)
                      +++|+.+|++|++.    |.    +..+..+|.+|....|   ++++|+.+|++|++.    +.    ...+.++|.++.
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~---d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG---DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            99999999999874    54    4578899999965324   999999999999884    32    345579999999


Q ss_pred             hcCCHHHHHHHHHHHHHcC------cHHH-HHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          287 TEGEMMKAVVYLELATRAG------ETAA-DHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       287 ~~~~~~~A~~~~~~a~~~~------~~~a-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ..|++++|+..|++.....      ...+ .+.+..++.++..+|...|...++++....|
T Consensus       167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9999999999999987641      2223 3456778888888999999999999987765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=5.7e-06  Score=85.53  Aligned_cols=250  Identities=13%  Similarity=0.017  Sum_probs=161.3

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHH
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDA  143 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~---~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~l  143 (342)
                      .+..|++.++...+...........   ...+...+|.++..    .+++++|..+++++...    ++    ..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            4567888888877777665433221   12466778888776    58999999999999863    22    2456788


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C---CHHHH
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVL----GD------PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G---HVRAQ  206 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~---~~~a~  206 (342)
                      |.++...|++++|..+++++++.    +.      ......+|.++.  ..|++++|...+++++..    +   ...++
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  615 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW--EWARLDEAEQCARKGLEVLSNYQPQQQLQCL  615 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH--HhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence            99999999999999999998753    11      223456788887  789999999999998663    1   24455


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH---HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH-
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY---NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG-  275 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~-~~a~~---~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~-  275 (342)
                      ..+|.++..    .++++.|..++.++...    +. .....   .+...+....|   +.+.|..|+.......  .. 
T Consensus       616 ~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~l~~~~~~~~~~~~  688 (903)
T PRK04841        616 AMLAKISLA----RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG---DKEAAANWLRQAPKPEFANNH  688 (903)
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC---CHHHHHHHHHhcCCCCCccch
Confidence            667777776    67899999999888653    11 11111   11111111123   6777777766654321  11 


Q ss_pred             ---HHHHHHHHHhhhcCCHHHHHHHHHHHHHc----Cc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          276 ---KAQLEHGLGLFTEGEMMKAVVYLELATRA----GE--TAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       276 ---~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~----~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                         .....++.++...|++++|...++++++.    +.  ..+.........+...++.++|.+.+.+...
T Consensus       689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               11346777777788888888888887664    21  2233333444444555667777766665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.71  E-value=3.8e-07  Score=83.62  Aligned_cols=104  Identities=19%  Similarity=0.057  Sum_probs=91.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      +...|..++..|++++|+.+|++++..  +++.+++++|.+|.  ..+++++|+..++++++.  .++.+++++|.+|..
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~--~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI--KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            455678888899999999999999866  78999999999999  889999999999999875  589999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                          .+++++|+.+|++++..  ++..+...++.|.
T Consensus        83 ----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         83 ----LEEYQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             ----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                78999999999999887  5777888887775

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=2e-06  Score=79.27  Aligned_cols=197  Identities=16%  Similarity=0.086  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHH-HHHHHhc
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQ-LALCLHR  215 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~-lg~~~~~  215 (342)
                      ..-++|.......+++.|++.|.++++. .+..-+.+.+-+|+  ..+.+.+.+....++++.| ...+.++ |+.++..
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~--e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r  303 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYL--ERGKYAECIELCEKAVEVGRELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHH--hccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999999877 55566777888898  8889999998888888875 3333332 3333322


Q ss_pred             CC---CCCCCHHHHHHHHHHHHHCC-C---------------------------HHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340          216 GR---GVDFNLQEAARWYLRAAEGG-Y---------------------------VRAMYNTSLCYSFGEGLPLSHRQARK  264 (342)
Q Consensus       216 g~---~~~~~~~~A~~~~~~A~~~~-~---------------------------~~a~~~lg~~y~~g~g~~~~~~~A~~  264 (342)
                      ++   +..++++.++.+|.+++... .                           ......-|..++.    .+|+.+|+.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av~  379 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAVK  379 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHHH
Confidence            11   12578999999999997531 1                           1112233455543    349999999


Q ss_pred             HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      +|.+|+..  .++..+-|.+.+|...+++..|+.-.+.++++++.....+......+....+++.|.+.++.-+...|+
T Consensus       380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            99999987  567888999999999999999999999999998776655555555555568889999988887777664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.69  E-value=1.9e-06  Score=84.50  Aligned_cols=177  Identities=19%  Similarity=0.134  Sum_probs=143.0

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .++.+.|+..|-+++..+  -+.++..||.+|..--|...|.++|.+|-+.  ++.++...++..|.  +..+.+.|...
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya--e~~~we~a~~I  548 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA--EESTWEEAFEI  548 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh--ccccHHHHHHH
Confidence            577889999999999875  6778889999998888999999999999877  56677777888888  88888888888


Q ss_pred             HHHHHHcCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019340          194 LYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMK  267 (342)
Q Consensus       194 ~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  267 (342)
                      ..++.+...    ...+...|..|..    .++...|+.+|+-|+..  .+..+|..+|.+|.. .|   .+.-|++.|.
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLe----a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sG---ry~~AlKvF~  620 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLE----AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SG---RYSHALKVFT  620 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccC----ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cC---ceehHHHhhh
Confidence            776666543    3445567877777    77999999999999876  577889999999965 33   8899999999


Q ss_pred             HHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          268 RAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       268 ~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +|...++  .-+.|..+.+....|++++|+..+..-+..
T Consensus       621 kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  621 KASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             hhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9987644  556688888899999999999988877643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.69  E-value=5.6e-07  Score=73.53  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ  172 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  172 (342)
                      .+..++.+|.++..    .+++++|+.+|++++...     .+.+++++|.+|...|++++|+.+|++++..  ....++
T Consensus        34 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         34 EAFTYYRDGMSAQS----EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            46778899999987    589999999999998762     2357899999999999999999999998865  667888


Q ss_pred             HHHHHHHHc-C----CccCHHHHHHHHHH
Q 019340          173 FNLGISYLQ-A----QPANAEEAVKLLYQ  196 (342)
Q Consensus       173 ~~Lg~~~~~-g----~~~~~~~A~~~~~~  196 (342)
                      .++|.++.. |    ..++++.|+.+|.+
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            888888873 2    34455544444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.67  E-value=1.4e-06  Score=71.42  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG  171 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a  171 (342)
                      ..+.+++.+|..|..    .+++++|+.+|++++...     ...+++++|.++...|++++|+.+|++++..  .++.+
T Consensus        33 ~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         33 KEAFVYYRDGMSAQA----DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            456677777777777    477788888888777542     1356777777777777777777777777654  55666


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      +..+|.++.  ..++...+...+.++
T Consensus       109 ~~~lg~~~~--~~g~~~~a~~~~~~A  132 (172)
T PRK02603        109 LNNIAVIYH--KRGEKAEEAGDQDEA  132 (172)
T ss_pred             HHHHHHHHH--HcCChHhHhhCHHHH
Confidence            667777766  555555555444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.67  E-value=1.1e-06  Score=71.98  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQY  207 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~  207 (342)
                      ..+.+++.+|..+...|++++|+.+|++++..  +   .+.+++++|.++.  ..+++++|+.+|++++..  .++.++.
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA--SNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            36678899999999999999999999999864  2   2478999999999  889999999999999885  5788999


Q ss_pred             HHHHHHhcCCCC----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019340          208 QLALCLHRGRGV----------DFNLQEAARWYLRAAEGGYVRAMYNTSLCY  249 (342)
Q Consensus       208 ~lg~~~~~g~~~----------~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y  249 (342)
                      .+|.+|..-...          ...+.+|..++++++..+... +..++.++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~  161 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN-YIEAQNWL  161 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh-HHHHHHHH
Confidence            999998752110          112689999999999876554 43444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.66  E-value=7.5e-07  Score=70.88  Aligned_cols=109  Identities=22%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHcCCccCHH
Q 019340          119 KNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D----PAGQFNLGISYLQAQPANAE  188 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~Lg~~~~~g~~~~~~  188 (342)
                      ++..++...+++.+...  .   ..+.+.+|.++...|++++|+..|+.+++.. +    +.+.+.|+.++.  ..++++
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~--~~~~~d  102 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL--QQGQYD  102 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH--HcCCHH
Confidence            44444444444444431  1   2344555555555566666666665555442 1    234555555555  555566


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          189 EAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       189 ~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +|+..++..... ..+.+...+|.+|..    .+++++|+..|++|
T Consensus       103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~----~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQIPDEAFKALAAELLGDIYLA----QGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence            666555442221 134445555666555    45566666666554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=3.4e-06  Score=70.96  Aligned_cols=154  Identities=17%  Similarity=0.072  Sum_probs=103.4

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH--HHH-HHHHHHHhcCC
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST--LAM-VDAGLMYWEMD  151 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~--~a~-~~lg~~~~~~~  151 (342)
                      .+.-+.+..|+....+.....+......-+  -|+.+..    .+++++|+++|..-++.+..  ..+ ..++.+- ..|
T Consensus        62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~l--kam~lEa----~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~G  134 (289)
T KOG3060|consen   62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKL--KAMLLEA----TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQG  134 (289)
T ss_pred             HHHhcchHHHHHHHHHHHHhCCCChhHHHH--HHHHHHH----hhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcC
Confidence            345566666665555555555443333333  3555555    57888888888888876522  222 2344333 455


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340          152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS--IAGHVRAQYQLALCLHRGRGVDFNLQEAA  227 (342)
Q Consensus       152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~~~g~~~~~~~~~A~  227 (342)
                      +.-+||+-+..-++.  +|.+||..|+.+|.  ..+++++|.-||+..+  .+-++..+..||.+++.-+| ..|+.-|.
T Consensus       135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~--~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~ar  211 (289)
T KOG3060|consen  135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYL--SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELAR  211 (289)
T ss_pred             CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            566888888877765  88888888888888  8888888888888854  45677777788877664333 56788888


Q ss_pred             HHHHHHHHCCC
Q 019340          228 RWYLRAAEGGY  238 (342)
Q Consensus       228 ~~~~~A~~~~~  238 (342)
                      ++|.+|++...
T Consensus       212 kyy~~alkl~~  222 (289)
T KOG3060|consen  212 KYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHhCh
Confidence            88888888754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.61  E-value=1.5e-07  Score=64.54  Aligned_cols=61  Identities=26%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA-NAEEAVKLLYQASI  199 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~-~~~~A~~~~~~a~~  199 (342)
                      +..+..+|.++...|++++|+.+|.++++.  +++.+++++|.+|.  ..+ ++++|+.+|+++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~--~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM--KLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH--HTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence            444555555555555555555555555433  34555555555555  444 45555555555543

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.59  E-value=1.4e-06  Score=66.40  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAG  171 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a  171 (342)
                      .++|.+|.++..    .|+.++|+.+|++|+..|     -..+++.+|..+...|++++|+..+++++..  +   +...
T Consensus         2 ~~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l   77 (120)
T PF12688_consen    2 RALYELAWAHDS----LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL   77 (120)
T ss_pred             chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence            456777777777    578888888888888764     1346677888888888888888888887754  3   4456


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      ...++.++.  ..++.++|+.++..++..
T Consensus        78 ~~f~Al~L~--~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   78 RVFLALALY--NLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHHH--HCCCHHHHHHHHHHHHHH
Confidence            666777777  677888888888776643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=2.9e-05  Score=65.43  Aligned_cols=162  Identities=13%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHH-HHHHHHHHhcCC
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRA-QYQLALCLHRGR  217 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a-~~~lg~~~~~g~  217 (342)
                      +.......++.+-|-.++.+.-+.  +.....-.-|+.+.  ..+.+++|+++|...++.+  +... .-.++.+-..|.
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE--a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK  135 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE--ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK  135 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH--HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence            334444455566666665554332  55555555555555  5566666666666665543  1111 123444444333


Q ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcC---C
Q 019340          218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEG---E  290 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~---~  290 (342)
                           ..+|++.+..-++.  +|.++|..|+.+|..    ..++++|..||+..+-..+  +-.+-.||.+++-.|   |
T Consensus       136 -----~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN  206 (289)
T KOG3060|consen  136 -----NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN  206 (289)
T ss_pred             -----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence                 22566666555554  566666666666653    3367777777776655433  233345666665554   5


Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340          291 MMKAVVYLELATRAGETAADHVKNV  315 (342)
Q Consensus       291 ~~~A~~~~~~a~~~~~~~a~~~~~~  315 (342)
                      ++-|..||.+|+++.+.+.....++
T Consensus       207 ~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  207 LELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHHHHHhChHhHHHHHHH
Confidence            6667777777776665444444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.56  E-value=1.6e-06  Score=66.00  Aligned_cols=91  Identities=18%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQ  172 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~  172 (342)
                      .++.+|..+..    .+++++|+..|.+++...  +   +.+++.+|.++...|++++|+.+|++++..  +   .+.++
T Consensus         4 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         4 AYYDAALLVLK----AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            34455555544    355555555555555431  1   334555555555555555555555555432  1   13455


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +.+|.++.  ..+++++|+.+|.++++
T Consensus        80 ~~~~~~~~--~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        80 LKLGMSLQ--ELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHHHH--HhCChHHHHHHHHHHHH
Confidence            55555555  45555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=2.4e-07  Score=63.50  Aligned_cols=64  Identities=22%  Similarity=0.333  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhCC
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVLG  167 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~~  167 (342)
                      ++..++.+|.++..    .+++++|+.+|+++++.  +++.+++++|.+|...| ++++|++.++++++.+
T Consensus         2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            67889999999999    69999999999999996  48899999999999999 7999999999998754

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.54  E-value=2e-06  Score=65.47  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRAQ  206 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~  206 (342)
                      +++++.+|..+...|++++|+..|++++..  ++   +.+.+.+|.++.  ..++++.|+.+|++++..  +   .+.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--AQGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            467788899998899999999999998864  22   568888999988  888899999999988763  3   36778


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      +.+|.++..    .+++++|+.+|+++++.
T Consensus        80 ~~~~~~~~~----~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        80 LKLGMSLQE----LGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence            888888876    66788888888887765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=3.3e-05  Score=70.87  Aligned_cols=146  Identities=21%  Similarity=0.153  Sum_probs=125.3

Q ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH
Q 019340          134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL  209 (342)
Q Consensus       134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  209 (342)
                      .+...++|..+..+...|.+++|...+...+.  ++|+..+-..+.++.  ..++..+|.+.+++++..  +.+....++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~--~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL--EANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            36778999999999999999999999999764  489999999999999  899999999999998875  568889999


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 019340          210 ALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT  287 (342)
Q Consensus       210 g~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~  287 (342)
                      |..|..    .+++.+|+..++.....  .++..|..|+..|....                   +...+....+..|..
T Consensus       381 a~all~----~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g-------------------~~~~a~~A~AE~~~~  437 (484)
T COG4783         381 AQALLK----GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG-------------------NRAEALLARAEGYAL  437 (484)
T ss_pred             HHHHHh----cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC-------------------chHHHHHHHHHHHHh
Confidence            999998    45778999999998875  68999999999995411                   236667777888888


Q ss_pred             cCCHHHHHHHHHHHHHc
Q 019340          288 EGEMMKAVVYLELATRA  304 (342)
Q Consensus       288 ~~~~~~A~~~~~~a~~~  304 (342)
                      .|++++|+..+.+|.+.
T Consensus       438 ~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         438 AGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.52  E-value=5.8e-06  Score=65.76  Aligned_cols=125  Identities=15%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-C----HHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S----TLAMV  141 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~----~~a~~  141 (342)
                      ....+...+..++...+...+..+.+.-+..+. ..+.+.+|.++..    .+++++|+..|+.++... +    +.+.+
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~~~l~~~~~~~~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAKAALEKALANAPDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            344455556677777777777777776655433 3677778888777    578888888888888753 2    24667


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      .|+.++...|++++|+..++..... -.+.+...+|.+|.  ..|+.++|+..|++++
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~--~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL--AQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH--HCCCHHHHHHHHHHhC
Confidence            7888888888888888888664332 34567777888888  7888888888888763

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.51  E-value=1.5e-06  Score=62.22  Aligned_cols=72  Identities=24%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      +.+|.++...|++++|+.+++++++.  .++.+++.+|.++.  ..+++++|+.+|++++..  .+..++..+|.++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY--KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            34444444444444444444444432  22334444444444  334444444444444432  12334444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.51  E-value=4.2e-06  Score=68.33  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHcCCccCHHH
Q 019340          119 KNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPAGQFNLGISYLQAQPANAEE  189 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~Lg~~~~~g~~~~~~~  189 (342)
                      +++..+...+..-++.    ....+++.+|.++...|++++|+.+|++++..  +   .+.+++++|.+|.  ..+++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--~~g~~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--SNGEHTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--HcCCHHH
Confidence            3444555555443322    24567789999999999999999999999865  3   2458999999999  8999999


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          190 AVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       190 A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      |+.+|++++..  ....++.++|.++.
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            99999998874  56788889998886

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.50  E-value=1.7e-06  Score=61.99  Aligned_cols=92  Identities=25%  Similarity=0.369  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS  178 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  178 (342)
                      +++.+|.++..    .+++++|+.+|+++++..  +..+++.+|.++...+++++|+.+|++++..  .++.+++.+|.+
T Consensus         2 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           2 ALLNLGNLYYK----LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHH----HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            46778888887    589999999999998864  5678899999999999999999999999875  566789999999


Q ss_pred             HHcCCccCHHHHHHHHHHHHHc
Q 019340          179 YLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      +.  ..+++++|..++.++++.
T Consensus        78 ~~--~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          78 YY--KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HH--HHHhHHHHHHHHHHHHcc
Confidence            99  888999999999988754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.50  E-value=5.1e-07  Score=64.60  Aligned_cols=77  Identities=23%  Similarity=0.276  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQA-AVLGDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      +++++|+.+|++.++..    +...++.+|.+|...|++++|+.++++. ....++...+.+|.++.  ..+++++|+..
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~--~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLL--KLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HhCCHHHHHHH
Confidence            56667777777766642    2344555677777777777777776661 12244566666666666  66667777666


Q ss_pred             HHHH
Q 019340          194 LYQA  197 (342)
Q Consensus       194 ~~~a  197 (342)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.49  E-value=5.8e-05  Score=78.11  Aligned_cols=247  Identities=11%  Similarity=-0.008  Sum_probs=128.1

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCC-------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CC----HHHHH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLR-------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS----TLAMV  141 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~-------~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~----~~a~~  141 (342)
                      +..+++.++...+..........+       .......+|.++..    .+++++|..+++++++.   ++    ..+..
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~  495 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN----DGDPEEAERLAELALAELPLTWYYSRIVATS  495 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            344555555554444433322211       12334445555555    46777777777777652   11    12445


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC------H
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH------V  203 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~------~  203 (342)
                      .+|.++...|++++|..++++++..    ++    ..+..++|.++.  ..|+++.|..+++++++.    +.      .
T Consensus       496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF--AQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            6677777777777777777776632    22    234556677766  667777777777776542    10      1


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----
Q 019340          204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----  272 (342)
Q Consensus       204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----  272 (342)
                      ..+..+|.++..    .+++++|..++.+++..    +   ...++..+|.++.. .|   ++.+|..++..+...    
T Consensus       574 ~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-~G---~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        574 FLLRIRAQLLWE----WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-RG---DLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHhcc
Confidence            223455655554    45677777777776553    1   13344455666543 23   777777777776442    


Q ss_pred             CC-HHHHH---H-HHHHhhhcCCHHHHHHHHHHHHHcCcHHH----HHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          273 GH-GKAQL---E-HGLGLFTEGEMMKAVVYLELATRAGETAA----DHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       273 ~~-~~a~~---~-Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a----~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      +. .....   . ....+...|+.++|..++...........    .............++.++|...+.+..
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al  718 (903)
T PRK04841        646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN  718 (903)
T ss_pred             cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            11 11110   0 11223446677777777655443211110    011222233334455666666555543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.47  E-value=6.5e-05  Score=65.04  Aligned_cols=172  Identities=10%  Similarity=0.012  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDP  169 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~  169 (342)
                      .+...|..|..+..    .+++++|+..|++.....  .+   .+.+.+|.+|...+++++|+.+|++.++.     .-+
T Consensus        31 ~~~~~Y~~A~~~~~----~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         31 PPSEIYATAQQKLQ----DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            44555666666666    467777777777776642  22   34477777777777777777777777754     235


Q ss_pred             HHHHHHHHHHHc-C---------------CccCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          170 AGQFNLGISYLQ-A---------------QPANAEEAVKLLYQASIA--G---HVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       170 ~a~~~Lg~~~~~-g---------------~~~~~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      .+++.+|.++.. +               +.....+|+..|++.++.  +   .++|...|..+...             
T Consensus       107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~-------------  173 (243)
T PRK10866        107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR-------------  173 (243)
T ss_pred             HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------------
Confidence            677777766421 0               111134566666666653  2   13333333333221             


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                               -+.-.+.+|..|... |   .+.-|+.-++..++.     ...++++.++..|...|..++|..+....
T Consensus       174 ---------la~~e~~ia~~Y~~~-~---~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        174 ---------LAKYELSVAEYYTKR-G---AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             ---------HHHHHHHHHHHHHHc-C---chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                     123344666767552 2   777788888888775     22577788888888888888887776554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.46  E-value=7.4e-06  Score=62.41  Aligned_cols=92  Identities=26%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRAQY  207 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a~~  207 (342)
                      .+++++|.++...|+.++|+.+|+++++.+-     ..++..+|..+.  ..|++++|+..+++++..  +   +.....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr--~LG~~deA~~~L~~~~~~~p~~~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR--NLGRYDEALALLEEALEEFPDDELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence            4678888888888999999999999887632     457788888888  888999999999887763  3   455666


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          208 QLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      .++.++..    .++.++|+.++..++.
T Consensus        80 f~Al~L~~----~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   80 FLALALYN----LGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            67777665    5677888888777653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.43  E-value=1.1e-05  Score=77.36  Aligned_cols=131  Identities=18%  Similarity=0.042  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhC--
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM--------DKKEAAISLYRQAAVL--  166 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~--------~~~~~A~~~~~~a~~~--  166 (342)
                      .++..+|.-|.-|... +...+..+|+.+|++|++.  +++.++-.++.+|...        .+..++....+++...  
T Consensus       337 ~~Ay~~~lrg~~~~~~-~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        337 GAALTLFYQAHHYLNS-GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            3455666666655542 3345566777777777775  3555665555555332        1233444444443321  


Q ss_pred             --CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          167 --GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       167 --~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                        .++.++.-+|.++.  ..+++++|...|+++++.+ +..++..+|.++..    .++.++|+.+|++|+..
T Consensus       416 ~~~~~~~~~ala~~~~--~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        416 LNVLPRIYEILAVQAL--VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNL  482 (517)
T ss_pred             CcCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence              33455555555555  4556666666666665543 34555555665554    44556666666666554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.41  E-value=1.3e-06  Score=62.54  Aligned_cols=78  Identities=29%  Similarity=0.347  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcCCCCCCCHH
Q 019340          150 MDKKEAAISLYRQAAVLG----DPAGQFNLGISYLQAQPANAEEAVKLLYQA-SIAGHVRAQYQLALCLHRGRGVDFNLQ  224 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~~~g~~~~~~~~  224 (342)
                      .|++++|+.+|+++++..    +...++.+|.+|+  ..+++++|+.++++. ....++...+.+|.|+..    .++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~--~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l~~y~   75 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF--QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----LGKYE   75 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH--HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----TT-HH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHH
Confidence            478889999999987652    3456777899998  888999999999872 223567888888888887    77888


Q ss_pred             HHHHHHHHH
Q 019340          225 EAARWYLRA  233 (342)
Q Consensus       225 ~A~~~~~~A  233 (342)
                      +|+..|++|
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            888888775

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.41  E-value=6.3e-05  Score=71.81  Aligned_cols=229  Identities=13%  Similarity=0.063  Sum_probs=152.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~L  175 (342)
                      +.+.+.-...++..    .|++++|++++......  +....+-..|.++...|++++|...|+..++.+.  ..-+..|
T Consensus         3 ~SE~lLY~~~il~e----~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L   78 (517)
T PF12569_consen    3 HSELLLYKNSILEE----AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL   78 (517)
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            34445555666666    38999999999886664  4566677899999999999999999999998754  4444444


Q ss_pred             HHHHHc--C-CccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340          176 GISYLQ--A-QPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNL-QEAARWYLRAAEGGYVRAMYNTSLCYS  250 (342)
Q Consensus       176 g~~~~~--g-~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~-~~A~~~~~~A~~~~~~~a~~~lg~~y~  250 (342)
                      ..+...  + ...+.+.-...|......- .+.+--.+...+..|.    .+ ..+..++...+..|.|....+|-.+|.
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~----~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~  154 (517)
T PF12569_consen   79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGD----EFKERLDEYLRPQLRKGVPSLFSNLKPLYK  154 (517)
T ss_pred             HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHH----HHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence            444421  1 1235677777777654432 2233334544444432    23 456677788888899999999999885


Q ss_pred             cCCCCcccHHHHHHHHHHHHHc---------------CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340          251 FGEGLPLSHRQARKWMKRAADC---------------GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH  311 (342)
Q Consensus       251 ~g~g~~~~~~~A~~~~~~a~~~---------------~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  311 (342)
                      ..    ....-....+..-...               .++    .+++.|++.|...|++++|+.+..+|++..|.-...
T Consensus       155 d~----~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el  230 (517)
T PF12569_consen  155 DP----EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL  230 (517)
T ss_pred             Ch----hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence            21    1111111222221110               112    355889999999999999999999999998765555


Q ss_pred             HHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          312 VKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       312 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ++......-..|+..+|.+.....+.+.+
T Consensus       231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~  259 (517)
T PF12569_consen  231 YMTKARILKHAGDLKEAAEAMDEARELDL  259 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence            55444444555999999998888877664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.40  E-value=0.00049  Score=61.71  Aligned_cols=213  Identities=14%  Similarity=0.051  Sum_probs=146.8

Q ss_pred             cCCHHHHHHHHHHHHhCC-CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHH--HHHHcCCccCHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG-STL-AMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLG--ISYLQAQPANAEEAVK  192 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~-~~~-a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg--~~~~~g~~~~~~~A~~  192 (342)
                      .||+.+|.....++++.+ .+. ++..-+..-...||.+.|-.|+.++.++ +++.-...|.  .+..  ..+|+.-|..
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll--~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL--NRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH--hCCCchhHHH
Confidence            589999999999999986 333 3445556777789999999999999998 6666555554  4455  7889999999


Q ss_pred             HHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHH-----HHHHHHHHcCCCCcccHHHH
Q 019340          193 LLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAM-----YNTSLCYSFGEGLPLSHRQA  262 (342)
Q Consensus       193 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~-----~~lg~~y~~g~g~~~~~~~A  262 (342)
                      -..++.++  .++++..-.-.+|..    .+++.....+..+..+.+   +....     ...|.+-...  -..+.+.=
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~--~~~~~~gL  248 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR--DDNGSEGL  248 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh--ccccchHH
Confidence            99998886  489999988999987    678888888777766543   32221     1122222111  11223333


Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          263 RKWMKRAAD--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       263 ~~~~~~a~~--~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ..|++.--.  ..+++....++.-+...|+.++|.++.+.+++.+.+.-   +-...-.+..++...-++.++.|.+.+|
T Consensus       249 ~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         249 KTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence            445555433  25566667777777788888888888888887653332   3344555667777777777788877776


Q ss_pred             C
Q 019340          341 L  341 (342)
Q Consensus       341 ~  341 (342)
                      .
T Consensus       326 ~  326 (400)
T COG3071         326 E  326 (400)
T ss_pred             C
Confidence            5

>PRK11906 transcriptional regulator; Provisional

Probab=98.39  E-value=4.9e-05  Score=69.98  Aligned_cols=159  Identities=14%  Similarity=0.020  Sum_probs=105.1

Q ss_pred             CHH--HHHHHHHHHHcCCCCcCCHHHHHHHHHHHH---hC--CCHHHHHHHHHHHhcC---------CCHHHHHHHHHHH
Q 019340          100 EAM--VLLRWGKRFKHGRGVRKNLDKALDSFLKGA---AR--GSTLAMVDAGLMYWEM---------DKKEAAISLYRQA  163 (342)
Q Consensus       100 ~a~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~---~~--~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a  163 (342)
                      +++  ..|..|..... .+.+.+.+.|+.+|.+|+   +.  +.+.++..++.+|+..         .+..+|...-++|
T Consensus       252 ~a~~~d~ylrg~~~~~-~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA  330 (458)
T PRK11906        252 NHYLSDEMLAGKKELY-DFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV  330 (458)
T ss_pred             cchhhHHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            555  66777776655 355667888888899988   44  3577777777777653         3566777777777


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH
Q 019340          164 AVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV  239 (342)
Q Consensus       164 ~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~  239 (342)
                      ++.  +|+.|+..+|.+..  -.++++.|+.+|++|..  ++.+.+++..|.+...    .++.++|++++++|+.....
T Consensus       331 veld~~Da~a~~~~g~~~~--~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        331 SDITTVDGKILAIMGLITG--LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HhcCCCCHHHHHHHHHHHH--hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCch
Confidence            765  67777777887766  55568888888888765  3567777777777665    55677777777777776543


Q ss_pred             HHH---HHHHH-HHHcCCCCcccHHHHHHHHHHHH
Q 019340          240 RAM---YNTSL-CYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       240 ~a~---~~lg~-~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      ..-   ..+-. +|.     +.-.+.|+.+|-+-.
T Consensus       405 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  434 (458)
T PRK11906        405 RRKAVVIKECVDMYV-----PNPLKNNIKLYYKET  434 (458)
T ss_pred             hhHHHHHHHHHHHHc-----CCchhhhHHHHhhcc
Confidence            322   22222 331     335566666655443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00016  Score=67.84  Aligned_cols=222  Identities=10%  Similarity=0.025  Sum_probs=153.3

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH--hCCCHHHHHHH
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA--ARGSTLAMVDA  143 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~--~~~~~~a~~~l  143 (342)
                      .+.++.+......+++.+|...+.+.+...++  +..+.+.-=.+..+    ...|++|+.+.++--  ..++. ..+.-
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq----~~ky~~ALk~ikk~~~~~~~~~-~~fEK   85 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQ----LDKYEDALKLIKKNGALLVINS-FFFEK   85 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhh----hhHHHHHHHHHHhcchhhhcch-hhHHH
Confidence            56777788888999999999999888888766  55555544444444    367889986666532  22222 22788


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCC
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDF  221 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~  221 (342)
                      +.|+++.+..++|++.+. .++..++.....-+.+++  ..+++++|+..|+..++.+  +.+........-..      
T Consensus        86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlY--rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~------  156 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLY--RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA------  156 (652)
T ss_pred             HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH------
Confidence            999999999999999999 777777777777788888  7899999999999998764  23333222221110      


Q ss_pred             CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------CC----------HHHHHHH
Q 019340          222 NLQEAARWYLRAAE---GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------GH----------GKAQLEH  281 (342)
Q Consensus       222 ~~~~A~~~~~~A~~---~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~----------~~a~~~L  281 (342)
                       ...... +.+.+.   .+.-+-+||.+-++.. .|   ++.+|++.+++|.+.       ++          ......|
T Consensus       157 -a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~-~g---ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  157 -AALQVQ-LLQSVPEVPEDSYELLYNTACILIE-NG---KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             -HhhhHH-HHHhccCCCcchHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence             000111 122222   2456678888888843 44   999999999999331       11          1244788


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          282 GLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       282 g~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      +.++...|+.++|...|..-+...+.|.
T Consensus       231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  231 AYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            9999999999999999998887765544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=5.9e-05  Score=67.79  Aligned_cols=156  Identities=17%  Similarity=0.063  Sum_probs=123.8

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH-----------
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST-----------  137 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~-----------  137 (342)
                      +-++.-+...++..+|+.+....++.-+.  ++.+++.-|.++..    ..+.++|+.+|++++.++..           
T Consensus       173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~--n~~al~vrg~~~yy----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~  246 (486)
T KOG0550|consen  173 LLKAECLAFLGDYDEAQSEAIDILKLDAT--NAEALYVRGLCLYY----NDNADKAINHFQQALRLDPDHQKSKSASMMP  246 (486)
T ss_pred             HhhhhhhhhcccchhHHHHHHHHHhcccc--hhHHHHhccccccc----ccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence            33344445667888888887777777555  78888888988877    58999999999999987522           


Q ss_pred             ---HHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHH
Q 019340          138 ---LAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQ  206 (342)
Q Consensus       138 ---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~  206 (342)
                         ..+..-|.-.+..|++.+|.+.|..++..+      ++..+.+.+.+..  ..++..+|+.-...++..+  ...++
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~--rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI--RLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc--ccCCchhhhhhhhhhhhcCHHHHHHH
Confidence               234456677777899999999999998652      3445666666666  8999999999999998875  67899


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      ..-|.|+..    ..++++|++.|++|++.
T Consensus       325 l~ra~c~l~----le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  325 LRRANCHLA----LEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence            999999987    77899999999999876

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=5.6e-05  Score=62.98  Aligned_cols=194  Identities=19%  Similarity=0.175  Sum_probs=122.7

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCccCHHHH
Q 019340          119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G----DPAGQFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~~~~g~~~~~~~A  190 (342)
                      ..+++|.++|.+|+.            +|...+++..|-..|.++++.    +    -...+...+.+|.   ..++.+|
T Consensus        28 ~k~eeAadl~~~Aan------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk---k~~~~eA   92 (288)
T KOG1586|consen   28 NKYEEAAELYERAAN------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK---KVDPEEA   92 (288)
T ss_pred             cchHHHHHHHHHHHH------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh---ccChHHH
Confidence            589999999999765            333344555555555555432    1    2445556667776   4599999


Q ss_pred             HHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C-CH-----HHHHHHHHHHHcCCC
Q 019340          191 VKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G-YV-----RAMYNTSLCYSFGEG  254 (342)
Q Consensus       191 ~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~-~~-----~a~~~lg~~y~~g~g  254 (342)
                      +.+++++++.    |.    +.-+..||.+|+.   -..|+++|+.+|+.|++-  + ..     .++...+..- -   
T Consensus        93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya-a---  165 (288)
T KOG1586|consen   93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA-A---  165 (288)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH-H---
Confidence            9999999873    42    2335578899975   147899999999999873  1 11     1222222222 1   


Q ss_pred             CcccHHHHHHHHHHHHHc--CCH-------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH----HHHHHHhhcC
Q 019340          255 LPLSHRQARKWMKRAADC--GHG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH----VKNVILQQLS  321 (342)
Q Consensus       255 ~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~----~~~~~~~~~~  321 (342)
                      ...+|.+|+..|++.+..  ++.       .-.+.-|.+++...|.-.+...+++-.+..|..+..    .+..+..-..
T Consensus       166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie  245 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE  245 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence            133899999999988763  332       233667777777888888888888888888765433    3333333344


Q ss_pred             hhcHHHHHHHHHh
Q 019340          322 ATSRDRAMLVVDS  334 (342)
Q Consensus       322 ~~~~~~a~~~~~~  334 (342)
                      ..+.+.--+..++
T Consensus       246 E~d~e~fte~vke  258 (288)
T KOG1586|consen  246 EQDIEKFTEVVKE  258 (288)
T ss_pred             hhhHHHHHHHHHh
Confidence            4444444334433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.34  E-value=2.4e-05  Score=69.20  Aligned_cols=225  Identities=15%  Similarity=0.073  Sum_probs=153.2

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHH-HHHHHHcCCCCcCCHHHHHHH----HHHHHhCCC---
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLR-WGKRFKHGRGVRKNLDKALDS----FLKGAARGS---  136 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~-lg~~y~~g~g~~~~~~~A~~~----~~~A~~~~~---  136 (342)
                      ++..+.+...+|..++..++.   ..|-+......+.+.-+. ||-.-..+ -..+.+++++.+    ..-+.+..+   
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al---~~w~~~L~~l~~~~~Rf~~lG~l~~a~-s~~g~y~~mL~~a~sqi~~a~~~~ds~~   81 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKAL---QVWTKVLEKLSDLMGRFRVLGCLVTAH-SEMGRYKEMLKFAVSQIDTARELEDSDF   81 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHH---HHHHHHHHHHHHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888899999999987   556666555555543321 22211111 002334443322    222333333   


Q ss_pred             -HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC--
Q 019340          137 -TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH--  202 (342)
Q Consensus       137 -~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~--  202 (342)
                       -++..+|++-+...-++.+++.+-+-.+..       ....+...+|.++.  ..+.+++++++|+++..-    ++  
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl--gls~fq~~Lesfe~A~~~A~~~~D~~  159 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL--GLSVFQKALESFEKALRYAHNNDDAM  159 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh--hHHHHHHHHHHHHHHHHHhhccCCce
Confidence             357788999998888999999887776644       12356666888888  788999999999998763    23  


Q ss_pred             --HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC------CCH------HHHHHHHHHHHcCCCCcccHHHHHHHHHH
Q 019340          203 --VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG------GYV------RAMYNTSLCYSFGEGLPLSHRQARKWMKR  268 (342)
Q Consensus       203 --~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~------~~~------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  268 (342)
                        -.++..||.+|..    .+|++||.-+..+|++.      ++.      .+.|.|+..+. -.|   ....|.++-++
T Consensus       160 LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G---~LgdA~e~C~E  231 (518)
T KOG1941|consen  160 LELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLG---RLGDAMECCEE  231 (518)
T ss_pred             eeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-Hhc---ccccHHHHHHH
Confidence              3567889999877    88999999999999874      332      35667777773 344   45555555555


Q ss_pred             H----HHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          269 A----ADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       269 a----~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      |    +..|+    +....-+|.+|...|+.+.|+.-|+.|..
T Consensus       232 a~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  232 AMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            5    44566    44567899999999999999999999854

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.33  E-value=2.1e-06  Score=58.01  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      .+|..+...|++++|+..|+++++.  +++++++.+|.++.  ..+++++|+.+|+++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY--QQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence            4555566666666666666666544  45566666666666  55666666666666554

>PRK11906 transcriptional regulator; Provisional

Probab=98.33  E-value=5.7e-05  Score=69.55  Aligned_cols=157  Identities=10%  Similarity=0.031  Sum_probs=117.2

Q ss_pred             HHHHHHHHHc-CCccCHHHHHHHHHHHH---H--cCCHHHHHHHHHHHhcC----CC-CCCCHHHHHHHHHHHHHC--CC
Q 019340          172 QFNLGISYLQ-AQPANAEEAVKLLYQAS---I--AGHVRAQYQLALCLHRG----RG-VDFNLQEAARWYLRAAEG--GY  238 (342)
Q Consensus       172 ~~~Lg~~~~~-g~~~~~~~A~~~~~~a~---~--~~~~~a~~~lg~~~~~g----~~-~~~~~~~A~~~~~~A~~~--~~  238 (342)
                      .+..|...+. +.+.+.+.|+.+|.+++   +  ++.+.++..++.|+..+    +. ...+..+|.+.-++|++.  +|
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3666666653 45667889999999998   3  45789999999998643    32 356788999999999987  58


Q ss_pred             HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH-HHHH
Q 019340          239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH-VKNV  315 (342)
Q Consensus       239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~-~~~~  315 (342)
                      +.++..+|.+...    ..+++.|..+|++|...  +.+.+++..|++..-.|+.++|..+.++|+++.|-.... .+.+
T Consensus       338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~  413 (458)
T PRK11906        338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE  413 (458)
T ss_pred             HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence            8899999997643    33799999999999886  558888999999999999999999999999998765433 2333


Q ss_pred             HHhhcChhcHHHHHHHH
Q 019340          316 ILQQLSATSRDRAMLVV  332 (342)
Q Consensus       316 ~~~~~~~~~~~~a~~~~  332 (342)
                      ....-.....+.++.++
T Consensus       414 ~~~~~~~~~~~~~~~~~  430 (458)
T PRK11906        414 CVDMYVPNPLKNNIKLY  430 (458)
T ss_pred             HHHHHcCCchhhhHHHH
Confidence            33122234455555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.32  E-value=1.6e-05  Score=76.14  Aligned_cols=139  Identities=15%  Similarity=-0.009  Sum_probs=102.7

Q ss_pred             CCHHHH--HHHHHHHHc-CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHHHHHC-
Q 019340          167 GDPAGQ--FNLGISYLQ-AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVD----FNLQEAARWYLRAAEG-  236 (342)
Q Consensus       167 ~~~~a~--~~Lg~~~~~-g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~----~~~~~A~~~~~~A~~~-  236 (342)
                      .+++|+  +.-|.-|.. +..++..+|+.+|+++++  ++++.++..++.+|....+..    .+...+.....++... 
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            454544  344555543 456678899999999887  568888888888775432222    2345666667776553 


Q ss_pred             ---CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          237 ---GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       237 ---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                         .++.++..+|.++.. .|   ++++|...|++|++.+ +..++..+|.++...|++++|..+|++|+++++.+.
T Consensus       415 ~~~~~~~~~~ala~~~~~-~g---~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        415 ELNVLPRIYEILAVQALV-KG---KTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cCcCChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence               356778888888753 33   9999999999999874 477889999999999999999999999999976544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.30  E-value=9.6e-05  Score=62.27  Aligned_cols=76  Identities=22%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C---CHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G---DPA  170 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~  170 (342)
                      +..+|..|..+..    .|++.+|+..|++.....     -+.+++.+|.++...|++++|+..|++.+..  +   -+.
T Consensus         5 ~~~lY~~a~~~~~----~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    5 AEALYQKALEALQ----QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            4445555555555    355555555555555421     2344555555555555555555555554433  1   134


Q ss_pred             HHHHHHHHHH
Q 019340          171 GQFNLGISYL  180 (342)
Q Consensus       171 a~~~Lg~~~~  180 (342)
                      +++.+|.++.
T Consensus        81 A~Y~~g~~~~   90 (203)
T PF13525_consen   81 ALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.30  E-value=0.00041  Score=60.10  Aligned_cols=180  Identities=15%  Similarity=0.011  Sum_probs=120.7

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVR  204 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~  204 (342)
                      .++...+..|..+...|++++|+..|++....  +.+   .+.+.||.+|+  ..+++++|+.+|++.++.     ..+.
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            46778889999999999999999999999876  333   45699999999  899999999999999884     3578


Q ss_pred             HHHHHHHHHhc-CC----------CCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          205 AQYQLALCLHR-GR----------GVDFN---LQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       205 a~~~lg~~~~~-g~----------~~~~~---~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      +++.+|.++.. +.          ....|   ..+|+..|++.++.-.-..                -..+|...+... 
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~----------------ya~~A~~rl~~l-  170 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ----------------YTTDATKRLVFL-  170 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh----------------hHHHHHHHHHHH-
Confidence            89999988532 11          01122   2456666666665411000                111221111111 


Q ss_pred             HcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-----CcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          271 DCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA-----GETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       271 ~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      ...-+.-.+.+|..|...|.+.-|+.-++..++.     ..+++...+......+  +..++|...++.+
T Consensus       171 ~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l--g~~~~a~~~~~~l  238 (243)
T PRK10866        171 KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL--QLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence            1112344567888899999999999999999975     2355665555555444  6666676665554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.30  E-value=1.7e-05  Score=69.21  Aligned_cols=95  Identities=11%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHH
Q 019340          136 STLAMVDAGLMY-WEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVR  204 (342)
Q Consensus       136 ~~~a~~~lg~~~-~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~  204 (342)
                      +....|..+..+ ...|++++|+..|++.+..  ++   +.+++.||.+|+  ..+++++|+.+|+++++.  +   .++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~--~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY--NKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            345666666654 4567888888888887754  33   578888888888  777888888888887752  2   467


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      +++.+|.++..    .++.++|...|++.++.
T Consensus       219 Al~klg~~~~~----~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        219 AMFKVGVIMQD----KGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            77777877765    56777777777777654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=1.9e-05  Score=68.45  Aligned_cols=112  Identities=21%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CCccCHHHHHHHHHH
Q 019340          122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQPANAEEAVKLLYQ  196 (342)
Q Consensus       122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~  196 (342)
                      +.-+.-++.-+..  +|++.|..||.+|...|++..|...|++|...  ++++.+..+|.++++ ....+..++...|++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            3334444444433  47777777777777777777777777777655  667777777777664 345566777777777


Q ss_pred             HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      ++..  .+..+.+.||..++.    .+++.+|+..|++.++..
T Consensus       219 al~~D~~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcC
Confidence            7664  366777777777776    667777777777776653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.2e-05  Score=68.09  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          186 NAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       186 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      +.+.-+.-++.-+.  +++++.|..||.+|..    .+++..|...|.+|...  ++++.+-.+|.++....| ..+..+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-~~~ta~  211 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-QQMTAK  211 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CcccHH
Confidence            45555555555443  5688888888888887    77888888888888876  577777777777655543 568899


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      +...|++++..  .+..+.+.||..++..|++.+|...++..++..+++..
T Consensus       212 a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         212 ARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            99999999876  56889999999999999999999999999998765543

>PRK15331 chaperone protein SicA; Provisional

Probab=98.29  E-value=1.5e-05  Score=63.25  Aligned_cols=93  Identities=17%  Similarity=0.020  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGI  177 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~  177 (342)
                      +..|..|.-+.+    .|++++|..+|+-.+..+  ++..++.||-++...+++++|+..|-.+..  .+||...+..|.
T Consensus        38 e~iY~~Ay~~y~----~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         38 DGLYAHAYEFYN----QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            456666665555    478888888888877653  677788888888888888888888888764  478888888888


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHc
Q 019340          178 SYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      ||+  ..++..+|..+|+.+++.
T Consensus       114 C~l--~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        114 CQL--LMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHH--HhCCHHHHHHHHHHHHhC
Confidence            888  888888888888888774

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=1.5e-05  Score=68.91  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .++|.+|+..|.+|+++.  ++..+.+-+-+|.+.|.++.|++-++.|+..  ....+|..||.+|.  ..+++++|+..
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~--~~gk~~~A~~a  171 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL--ALGKYEEAIEA  171 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH--ccCcHHHHHHH
Confidence            478999999999999975  6777778999999999999999999998876  45788999999999  88899999999


Q ss_pred             HHHHHHc--CCHHHHHHHHHHHh
Q 019340          194 LYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       194 ~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      |+|+++.  .+.....+|...-.
T Consensus       172 ykKaLeldP~Ne~~K~nL~~Ae~  194 (304)
T KOG0553|consen  172 YKKALELDPDNESYKSNLKIAEQ  194 (304)
T ss_pred             HHhhhccCCCcHHHHHHHHHHHH
Confidence            9998875  46766667765544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.28  E-value=1.7e-05  Score=69.25  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDP  169 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~  169 (342)
                      +....|..+..+...   .+++++|+..|++.+...  +   +.+++.+|.+|+..|++++|+..|+++++.     ..+
T Consensus       141 ~e~~~Y~~A~~l~~~---~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~  217 (263)
T PRK10803        141 DANTDYNAAIALVQD---KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA  217 (263)
T ss_pred             CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            346667777655221   379999999999999852  2   579999999999999999999999999964     358


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      ++++.+|.++.  ..+++++|+.+|+++++.
T Consensus       218 dAl~klg~~~~--~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        218 DAMFKVGVIMQ--DKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHH--HcCCHHHHHHHHHHHHHH
Confidence            99999999999  889999999999999874

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=2.1e-05  Score=67.96  Aligned_cols=105  Identities=20%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLH  214 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  214 (342)
                      .+-.=|.-+...++|.+|+..|.+|++.  .++--+.+-+-+|.  ..+.++.|++-.+.++..+  +..+|..||..|.
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~--~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS--KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH--HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            3445566677789999999999999987  56677778888888  8999999999999998765  7899999999998


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 019340          215 RGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCY  249 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y  249 (342)
                      .    .+++.+|++.|+||++.+  +....-+|..+-
T Consensus       161 ~----~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  161 A----LGKYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             c----cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            7    678999999999999874  455555555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.24  E-value=0.00024  Score=59.88  Aligned_cols=170  Identities=15%  Similarity=0.094  Sum_probs=110.3

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVRA  205 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~a  205 (342)
                      ++..++..|..+...|++.+|+..|++....     --+++.+.+|.+++  ..+++.+|+..|++-++.  +   .+.+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            5678899999999999999999999999865     23689999999999  889999999999998773  3   4678


Q ss_pred             HHHHHHHHhcC-------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340          206 QYQLALCLHRG-------RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ  278 (342)
Q Consensus       206 ~~~lg~~~~~g-------~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~  278 (342)
                      ++.+|.++...       ........+|+..|+..+..-.-                ..-..+|...+... ...-...-
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l-~~~la~~e  144 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAEL-RNRLAEHE  144 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHH-HHHHHHHH
Confidence            99999987532       11234567888888887653110                00112222222211 11123445


Q ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHc--C---cHHHHHHHHHHHhhcChhc
Q 019340          279 LEHGLGLFTEGEMMKAVVYLELATRA--G---ETAADHVKNVILQQLSATS  324 (342)
Q Consensus       279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~--~---~~~a~~~~~~~~~~~~~~~  324 (342)
                      +.+|..|...|.+..|+..++..++.  +   .+++...+......+...+
T Consensus       145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            66777788888888888888887765  2   2345555555555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.23  E-value=6.6e-06  Score=57.78  Aligned_cols=58  Identities=28%  Similarity=0.409  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----GD-----PAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      ++.++|.+|...|++++|+.+|+++++.    ++     ..++.++|.+|.  ..+++++|+.+|++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY--RLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence            3444555555555555555555554421    11     234444444444  4444555555544443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.22  E-value=6e-06  Score=55.74  Aligned_cols=61  Identities=16%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             HHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          244 NTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       244 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                      .+|..+..    .+++++|+..|+++++.  +++.+++.+|.++...|++++|+.+|+++++..|.+
T Consensus         2 ~~a~~~~~----~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQ----QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHH----CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            46666654    23999999999999887  458889999999999999999999999999887654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.21  E-value=0.00021  Score=67.63  Aligned_cols=216  Identities=15%  Similarity=0.049  Sum_probs=151.3

Q ss_pred             HHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340          109 KRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP  184 (342)
Q Consensus       109 ~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~  184 (342)
                      .+|..     +++.+.+...++.+..  .|++++-..|..+...|+.++|..+.+.++..  ...-+|.-+|.++.  ..
T Consensus        16 k~yE~-----kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R--~d   88 (700)
T KOG1156|consen   16 KCYET-----KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR--SD   88 (700)
T ss_pred             HHHHH-----HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh--hh
Confidence            45555     6888888888888874  48888888999999999999999999999864  66778888999999  89


Q ss_pred             cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcccHH
Q 019340          185 ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHR  260 (342)
Q Consensus       185 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~  260 (342)
                      ++|++|++||+.|+.  +++...+..|+.+..+    .++++-......+-++...  ...|..++..+..    ..++.
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q----mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L----~g~y~  160 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ----MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL----LGEYK  160 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH----HHHHH
Confidence            999999999999977  4688899999888776    5567766666666666543  3334444444422    23788


Q ss_pred             HHHHHHHHHHHcC----C------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHH
Q 019340          261 QARKWMKRAADCG----H------GKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRA  328 (342)
Q Consensus       261 ~A~~~~~~a~~~~----~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a  328 (342)
                      .|...+..-....    +      .++...-..+....|.+++|.+.+..--..  +........+.+.  +..++.++|
T Consensus       161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~--~kl~~lEeA  238 (700)
T KOG1156|consen  161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL--MKLGQLEEA  238 (700)
T ss_pred             HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH--HHHhhHHhH
Confidence            8877766654432    1      223334444556677778877776654322  2222222223333  445788899


Q ss_pred             HHHHHhhhcCCCC
Q 019340          329 MLVVDSWRAMPSL  341 (342)
Q Consensus       329 ~~~~~~~~~~~~~  341 (342)
                      ..++..+....|.
T Consensus       239 ~~~y~~Ll~rnPd  251 (700)
T KOG1156|consen  239 VKVYRRLLERNPD  251 (700)
T ss_pred             HHHHHHHHhhCch
Confidence            9999998887774

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=0.0011  Score=56.63  Aligned_cols=258  Identities=12%  Similarity=0.044  Sum_probs=147.9

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLM  146 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~  146 (342)
                      +.+-.+...|..|+++............   .++..-...+.+.|..    .|.+..-+.-...+. .....+...++.+
T Consensus        10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylA----lg~~~~~~~eI~~~~-~~~lqAvr~~a~~   81 (299)
T KOG3081|consen   10 DELFNIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLA----LGQYQIVISEIKEGK-ATPLQAVRLLAEY   81 (299)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHH----ccccccccccccccc-CChHHHHHHHHHH
Confidence            3444555667788888776433332221   1344444445555544    112211111111111 1223344455555


Q ss_pred             HhcCCCHHHHHH-HHHHHHhC-C--CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCC
Q 019340          147 YWEMDKKEAAIS-LYRQAAVL-G--DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFN  222 (342)
Q Consensus       147 ~~~~~~~~~A~~-~~~~a~~~-~--~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~  222 (342)
                      ....++.++-+. .++..+.. +  +.-....-+.+|.  ..+++++|++...+.   +..++...=-.|+..    ...
T Consensus        82 ~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~--~~~~~deAl~~~~~~---~~lE~~Al~VqI~lk----~~r  152 (299)
T KOG3081|consen   82 LELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYM--HDGDFDEALKALHLG---ENLEAAALNVQILLK----MHR  152 (299)
T ss_pred             hhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhh--cCCChHHHHHHHhcc---chHHHHHHHHHHHHH----HHH
Confidence            555555444444 34444433 2  2233444456666  677899998888772   233333322334433    345


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          223 LQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       223 ~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g-~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      .+-|....++..+.++-.....|+..|..- .|.. .+..|.-+|+.-.+.-.  +.-++..+.+...++++++|...++
T Consensus       153 ~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge-k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~  231 (299)
T KOG3081|consen  153 FDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE-KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE  231 (299)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch-hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence            677888888877776666666677666432 1212 58999999999888633  4445667778888999999999999


Q ss_pred             HHHHcCcHHHHHHHHHHH-hhcChhcHHHHHHHHHhhhcCCCCC
Q 019340          300 LATRAGETAADHVKNVIL-QQLSATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      .|++..+.+..++.+.+. ..+.+.+-+.-.+...+++..+|.|
T Consensus       232 eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  232 EALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            999886555555444333 3344555556667888888888876

>PRK15331 chaperone protein SicA; Provisional

Probab=98.21  E-value=3.2e-05  Score=61.50  Aligned_cols=94  Identities=12%  Similarity=0.127  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALC  212 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~  212 (342)
                      -+..+..|.-+...|++++|...|+-.+.  ..+++-++.||.++.  ..+++++|+..|-.+..  .++|...+..|.|
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q--~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ--LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            35667888888899999999999998764  477888889999998  88999999999998755  4689999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      |..    .++..+|..+|..+++.
T Consensus       115 ~l~----l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        115 QLL----MRKAAKARQCFELVNER  134 (165)
T ss_pred             HHH----hCCHHHHHHHHHHHHhC
Confidence            987    78899999999988875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.20  E-value=5.5e-06  Score=58.21  Aligned_cols=61  Identities=21%  Similarity=0.346  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      +.++..+|.+|..    .+++++|+.+|+++++.    |     -+.++.++|.+|...|++++|+++|+++++
T Consensus         5 a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4678899999998    69999999999999864    3     245678999999999999999999999975

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00018  Score=62.15  Aligned_cols=208  Identities=11%  Similarity=-0.064  Sum_probs=106.8

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHH--HHHHhcCCCH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA--GLMYWEMDKK  153 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~l--g~~~~~~~~~  153 (342)
                      +...++..++.......+..+.  .-.++..||.||.+    .+++..|.+.|++......-.+++.+  +.-+...+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~----~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~   94 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYR----LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY   94 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence            3456677787777666666543  56678889999999    68999999999998876544444332  3333345555


Q ss_pred             HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          154 EAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       154 ~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      ..|+.......+..+  .+..-.-+-+.+  ..+|+.-+....++....+.++...+.|.+.+.    .++++.|++-|+
T Consensus        95 ADALrV~~~~~D~~~L~~~~lqLqaAIkY--se~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAvqkFq  168 (459)
T KOG4340|consen   95 ADALRVAFLLLDNPALHSRVLQLQAAIKY--SEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAVQKFQ  168 (459)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhc--ccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHHHHHH
Confidence            555544433322100  000000011111  223333333333333333444444444444433    334444444444


Q ss_pred             HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-------------------------------CCHHHH
Q 019340          232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-------------------------------GHGKAQ  278 (342)
Q Consensus       232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------------------------~~~~a~  278 (342)
                      .|.+.+  .+...|+++.+...    .+++..|+++....++.                               +-.++.
T Consensus       169 aAlqvsGyqpllAYniALaHy~----~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf  244 (459)
T KOG4340|consen  169 AALQVSGYQPLLAYNLALAHYS----SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF  244 (459)
T ss_pred             HHHhhcCCCchhHHHHHHHHHh----hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence            444431  23334444444432    11444444444444332                               112344


Q ss_pred             HHHHHHhhhcCCHHHHHHHHH
Q 019340          279 LEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       279 ~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      +--+.++++.+|++.|.+.+.
T Consensus       245 NLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  245 NLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhhhhhhhcccHHHHHHHhh
Confidence            555667888888888877665

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00065  Score=63.87  Aligned_cols=209  Identities=14%  Similarity=0.020  Sum_probs=142.2

Q ss_pred             CcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340          117 VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLGISYLQAQPANAEEAVK  192 (342)
Q Consensus       117 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~g~~~~~~~A~~  192 (342)
                      -.+++++|+....+.+..  ++.++...--.+....+.|++|++..++--  ..++.- .|.-+.|.+  ..+..++|+.
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Y--rlnk~Dealk  100 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEY--RLNKLDEALK  100 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHH--HcccHHHHHH
Confidence            357999999999998887  577777766667778899999997776633  223222 267778888  8889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          193 LLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       193 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      .+. .++..+......-|.+++.    ..++++|+..|+..+..+.  .+.....+..-..       ......+++...
T Consensus       101 ~~~-~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~~~~q~v~  168 (652)
T KOG2376|consen  101 TLK-GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQVQLLQSVP  168 (652)
T ss_pred             HHh-cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhHHHHHhcc
Confidence            998 6666666666666777666    6789999999999987643  3333322222210       111112333332


Q ss_pred             H--cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC----------cHHH-----HHHHHHHHhhcChhcHHHHHHHHH
Q 019340          271 D--CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG----------ETAA-----DHVKNVILQQLSATSRDRAMLVVD  333 (342)
Q Consensus       271 ~--~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~----------~~~a-----~~~~~~~~~~~~~~~~~~a~~~~~  333 (342)
                      .  .+.-+-+||.+.++...|++.+|++.++.|.+.+          ..+.     .....+.+.....|+.++|..++.
T Consensus       169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~  248 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV  248 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            2  2457788999999999999999999999994331          1111     123334444456688889998777


Q ss_pred             hhhcCCC
Q 019340          334 SWRAMPS  340 (342)
Q Consensus       334 ~~~~~~~  340 (342)
                      .+.+..+
T Consensus       249 ~~i~~~~  255 (652)
T KOG2376|consen  249 DIIKRNP  255 (652)
T ss_pred             HHHHhcC
Confidence            7765544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.11  E-value=2.5e-05  Score=69.40  Aligned_cols=195  Identities=13%  Similarity=0.061  Sum_probs=138.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHH
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF  173 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  173 (342)
                      .+...+...++..+..    +.+.+.++.-++..+..    .++....-.|.++...|++++|++.+.+.   ++.++..
T Consensus        63 ~~~l~av~~la~y~~~----~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~a  135 (290)
T PF04733_consen   63 SPELQAVRLLAEYLSS----PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLA  135 (290)
T ss_dssp             SCCCHHHHHHHHHHCT----STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHH
T ss_pred             ChhHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHH
Confidence            3445666667766544    35666777666654432    24456677888998899999999988775   7888888


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          174 NLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH--RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       174 ~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~--~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      ..-.+|.  ..++++.|.+.++..-+.++-....+|+..+.  ..+  ...+.+|...|+...+.  ..+..++.++.++
T Consensus       136 l~Vqi~L--~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g--~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~  211 (290)
T PF04733_consen  136 LAVQILL--KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG--GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH  211 (290)
T ss_dssp             HHHHHHH--HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred             HHHHHHH--HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            8888888  78899999999988776655455555554443  212  24688999999997765  3566777788888


Q ss_pred             HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHcCcH
Q 019340          250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEM-MKAVVYLELATRAGET  307 (342)
Q Consensus       250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~-~~A~~~~~~a~~~~~~  307 (342)
                      .. .|   ++++|...++.|+..  ++++.+.|++.+....|+. +.+.+++.+.....+.
T Consensus       212 l~-~~---~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  212 LQ-LG---HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             HH-CT----HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             HH-hC---CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence            54 33   999999999999875  5688889999998888887 6677787776665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=0.00077  Score=65.72  Aligned_cols=91  Identities=21%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHh----------------------CCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAV----------------------LGDPAGQFNLGISYLQAQPANAEEAVKLLY  195 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~  195 (342)
                      ..+++.+.-+...+|++.|+++|+|+-.                      ..++..+.+-|....  ..|+.+-|+.+|.
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE--S~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE--SVGEMDAALSFYS  936 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh--cccchHHHHHHHH
Confidence            4567777777777888889988888631                      123444445555555  5778888888887


Q ss_pred             HHHH-----------------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340          196 QASI-----------------------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       196 ~a~~-----------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~  234 (342)
                      .|-+                       .|+-.|+|.||..|+.    .++..+|+.+|.+|-
T Consensus       937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence            7621                       3577888889988887    678888988888873

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00012  Score=64.65  Aligned_cols=204  Identities=12%  Similarity=0.032  Sum_probs=134.6

Q ss_pred             cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVK  192 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~  192 (342)
                      .+|++-|+.+++-....+   ..+....+|.+++..||+++|...|+-+.+.+  +.+...+|+.+++  -.|.+.+|..
T Consensus        35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F--yLg~Y~eA~~  112 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF--YLGQYIEAKS  112 (557)
T ss_pred             cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH--HHHHHHHHHH
Confidence            489999999999888765   34567889999999999999999999998774  4577889999999  6778888887


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          193 LLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       193 ~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      .-.++.+.- ..+..++|+.-+        +.++-+..|...+.. ...-+..|+.+....    --+.+|++.|++.+.
T Consensus       113 ~~~ka~k~pL~~RLlfhlahkl--------ndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR----~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  113 IAEKAPKTPLCIRLLFHLAHKL--------NDEKRILTFHSSLQD-TLEDQLSLASVHYMR----MHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHhhCCCChHHHHHHHHHHHHh--------CcHHHHHHHHHHHhh-hHHHHHhHHHHHHHH----HHHHHHHHHHHHHHh
Confidence            766654321 234455555433        334445455544432 223344444443221    268999999999986


Q ss_pred             cCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc-CcHHHHHHHHHHHhhc---ChhcHHHHHHHHHhhh
Q 019340          272 CGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRA-GETAADHVKNVILQQL---SATSRDRAMLVVDSWR  336 (342)
Q Consensus       272 ~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~~~~~~~~~---~~~~~~~a~~~~~~~~  336 (342)
                      .+.  ..--.+++.+|+...-++-+.+.+.--+.. ++.....++......+   .....++-..++.+.-
T Consensus       180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~  250 (557)
T KOG3785|consen  180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID  250 (557)
T ss_pred             cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence            533  222367899999999999999888888776 3333333333333322   3333334444555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.00014  Score=62.96  Aligned_cols=178  Identities=14%  Similarity=0.096  Sum_probs=121.1

Q ss_pred             CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      .++.+|++.+.--.+..  +..++..||.||....++..|..+|++........+.|.+-.+--.-..+.+..|+.....
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~  103 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL  103 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            56778888777766654  4566778899999999999999999998887777776665333211145566777766655


Q ss_pred             HHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340          197 ASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-  272 (342)
Q Consensus       197 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  272 (342)
                      ..+..   +-..+..-+..|.     ..|+.-+....++-...++++...+.|-+... .|   +++.|.+-|..|.+- 
T Consensus       104 ~~D~~~L~~~~lqLqaAIkYs-----e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-eg---qyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  104 LLDNPALHSRVLQLQAAIKYS-----EGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EG---QYEAAVQKFQAALQVS  174 (459)
T ss_pred             hcCCHHHHHHHHHHHHHHhcc-----cccCcchHHHHHhccCCCccchhccchheeec-cc---cHHHHHHHHHHHHhhc
Confidence            54432   1122233333343     34566666666666666778888888866633 33   888888888888875 


Q ss_pred             C-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          273 G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       273 ~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      | .+--.++++.++++.+++..|+++-..-++.|
T Consensus       175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            3 34555788888888888888888888777765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.00089  Score=65.29  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340          169 PAGQFNLGISYLQAQPANAEEAVKLLYQASI----------------------AGHVRAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      ...+++.+.-+.  ..+|.+.|++||+|+-.                      ..++..+-.+|..++.    .++++-|
T Consensus       858 r~Tyy~yA~~Le--ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES----~GemdaA  931 (1416)
T KOG3617|consen  858 RNTYYNYAKYLE--ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES----VGEMDAA  931 (1416)
T ss_pred             hhhHHHHHHHHH--hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc----ccchHHH
Confidence            345666666666  67899999999998621                      1245556677777766    6678888


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          227 ARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       227 ~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      +.+|..|-      -|+.+-.+...    ..+.++|...   |-+.|+..|+|.||-.|.+.|++.+|+.+|.+|-.
T Consensus       932 l~~Y~~A~------D~fs~VrI~C~----qGk~~kAa~i---A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  932 LSFYSSAK------DYFSMVRIKCI----QGKTDKAARI---AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHhh------hhhhheeeEee----ccCchHHHHH---HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            88888763      23444333322    2256666543   33457888899999999999999999999988743

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.01  E-value=2.9e-05  Score=71.33  Aligned_cols=69  Identities=13%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCH
Q 019340           97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STL---AMVDAGLMYWEMDKKEAAISLYRQAAVLGDP  169 (342)
Q Consensus        97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~---a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  169 (342)
                      +..++++++++|.+|..    .+++++|+..|++|++.+  +++   +++++|.+|...|++++|+.+|++|++..++
T Consensus        71 dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~  144 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL  144 (453)
T ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence            46789999999999999    599999999999999974  553   4999999999999999999999999997544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=0.0098  Score=54.90  Aligned_cols=81  Identities=12%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHH
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      .||...|..++.+|++-.++..-+..+...-+-|       ++.+.|...|++-+-.. +...+...+..-...|+..-|
T Consensus       154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-------keieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-------KEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-------hHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence            4778888888899998876643333333222222       44555666666554432 344444555555555555555


Q ss_pred             HHHHHHHHh
Q 019340          157 ISLYRQAAV  165 (342)
Q Consensus       157 ~~~~~~a~~  165 (342)
                      ...|++|++
T Consensus       227 R~VyerAie  235 (677)
T KOG1915|consen  227 RSVYERAIE  235 (677)
T ss_pred             HHHHHHHHH
Confidence            555555553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00017  Score=64.94  Aligned_cols=104  Identities=12%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             HHHHHHHcCCCCcCCHHHHHHHHHHHHhC-C----------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 019340          106 RWGKRFKHGRGVRKNLDKALDSFLKGAAR-G----------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--  166 (342)
Q Consensus       106 ~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--  166 (342)
                      .-|..|..    .+++..|..-|++|+.. +                -...+.||+.+|...+++.+|+.+..++++.  
T Consensus       213 e~Gn~~fK----~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~  288 (397)
T KOG0543|consen  213 ERGNVLFK----EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP  288 (397)
T ss_pred             HhhhHHHh----hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence            34666666    47888888888888763 1                1235689999999999999999999998865  


Q ss_pred             CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 019340          167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR  215 (342)
Q Consensus       167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~  215 (342)
                      +|..|+|.-|.++.  ..++++.|+..|+++++  +++..+...|..|-..
T Consensus       289 ~N~KALyRrG~A~l--~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  289 NNVKALYRRGQALL--ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             CchhHHHHHHHHHH--hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            88899999999999  88899999999999876  4677888888777653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.95  E-value=0.0078  Score=49.94  Aligned_cols=193  Identities=22%  Similarity=0.177  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      ......++..+..    .+++..++..+..+..    ......+..+|..+...+++.+++..+.++...  .+......
T Consensus        59 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (291)
T COG0457          59 AGLLLLLALALLK----LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL  134 (291)
T ss_pred             hHHHHHHHHHHHH----cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence            4666667777776    4788888888888764    246667778888888888888888888888864  33344444


Q ss_pred             HHH-HHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 019340          175 LGI-SYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNT  245 (342)
Q Consensus       175 Lg~-~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~l  245 (342)
                      .+. ++.  ..+++++|+.+|.+++...     .......++..+..    ..+..+++..+.+++...   ....+..+
T Consensus       135 ~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  208 (291)
T COG0457         135 LALGALY--ELGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEALELLEKALKLNPDDDAEALLNL  208 (291)
T ss_pred             HHHHHHH--HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHHHHHHHHHHhhCcccchHHHHHh
Confidence            454 666  7788888888888886632     23334444444433    557888888888887763   35677778


Q ss_pred             HHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          246 SLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       246 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      +..+....    ++.+|...+..+.....  ......++..+...++.+++...+.+++...+.
T Consensus       209 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         209 GLLYLKLG----KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hHHHHHcc----cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            88875422    78888888888887644  466677777777666788888888888877665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.0024  Score=53.54  Aligned_cols=122  Identities=23%  Similarity=0.232  Sum_probs=64.7

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC---
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD---  168 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~---  168 (342)
                      +..-|.+|..    .+++..|=..|.+|++.    |    -+..+...+.+|. ..++++|+.+++++++.    |.   
T Consensus        37 ~~~Aan~ykl----aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~  111 (288)
T KOG1586|consen   37 YERAANMYKL----AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTM  111 (288)
T ss_pred             HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHH
Confidence            3344555555    46677777777776653    2    1233445555553 34777777777777654    11   


Q ss_pred             -HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C-CH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          169 -PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G-HV-----RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       169 -~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~-~~-----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                       +.-+..||.+|.. +..|+++||.+|+++.+-  + ..     ..+...+..-..    ..++.+|+..|++.+.
T Consensus       112 aAk~~~~iaEiyEs-dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~----leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  112 AAKHHIEIAEIYES-DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ----LEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence             2233445666652 346777777777776652  1 11     111222222222    4566777777766654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.92  E-value=0.00032  Score=53.21  Aligned_cols=98  Identities=20%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C-----HHHHHHHHHH
Q 019340          107 WGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D-----PAGQFNLGIS  178 (342)
Q Consensus       107 lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~-----~~a~~~Lg~~  178 (342)
                      -|++...+    ++.+.|++.|.+++..  ..+.++.+-+..+.-.|+.++|+.=+.+|+++. +     ..++..-|.+
T Consensus        49 ~~valaE~----g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   49 KAIALAEA----GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHhc----cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            36666664    8999999999999886  588899999999999999999999999999872 2     3577788888


Q ss_pred             HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340          179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLA  210 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  210 (342)
                      |.  ..++.+.|..-|+.+++.|.+-+...|-
T Consensus       125 yR--l~g~dd~AR~DFe~AA~LGS~FAr~QLV  154 (175)
T KOG4555|consen  125 YR--LLGNDDAARADFEAAAQLGSKFAREQLV  154 (175)
T ss_pred             HH--HhCchHHHHHhHHHHHHhCCHHHHHHHH
Confidence            88  7889999999999999988877665553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.90  E-value=0.00068  Score=60.23  Aligned_cols=110  Identities=22%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCH------HHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR----GST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDP------AGQFNLGIS  178 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~----~~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~------~a~~~Lg~~  178 (342)
                      +.++++++.|++|...    +|+    ..+..||.+|...+|+++|..+..+|++.      ++.      .+++.++..
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa  215 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA  215 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence            3455555555555543    121    23455555555555555555555555432      221      233444444


Q ss_pred             HHcCCccCHHHHHHHHHHH----HHcC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340          179 YLQAQPANAEEAVKLLYQA----SIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a----~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~  234 (342)
                      +.  ..|..-.|.++.+.+    ++.|    +.....-+|.+|..    .+|++.|+.-|+.|.
T Consensus       216 lR--~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  216 LR--LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAM  273 (518)
T ss_pred             HH--HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHH
Confidence            44  233333344444432    2233    23344455555554    445555555555553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.90  E-value=6.9e-05  Score=68.91  Aligned_cols=70  Identities=14%  Similarity=-0.014  Sum_probs=54.1

Q ss_pred             CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC
Q 019340           63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS  136 (342)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~  136 (342)
                      +.+.........++..+++.+|...+.+.++..++...+ .++|++|.+|..    .++.++|+..|++|++.++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALelsn  143 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRDYN  143 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence            346667777888888888888888888888877663333 568888888888    5888888888888888643

>smart00671 SEL1 Sel1-like repeats

Probab=97.88  E-value=3e-05  Score=45.42  Aligned_cols=35  Identities=34%  Similarity=0.578  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS  136 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~  136 (342)
                      .+++.||.+|..|.|+++|.++|+.||++|++.++
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            57899999999999999999999999999998764

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.87  E-value=0.00023  Score=61.10  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHHHHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQYQL  209 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~l  209 (342)
                      .|+.+.-+...||+..|...|..-++.     --++|+|+||.+++  ..++++.|...|..++..     .-|++++.|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y--~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY--AQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH--hcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            566666666777777777777777765     23677777777777  777777777777777663     246777777


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          210 ALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       210 g~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      |.|...    .++.++|-..|++.++.
T Consensus       222 g~~~~~----l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGR----LGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHH----hcCHHHHHHHHHHHHHH
Confidence            777766    66777777777777765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.86  E-value=0.00028  Score=60.60  Aligned_cols=82  Identities=13%  Similarity=0.046  Sum_probs=40.3

Q ss_pred             CccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcC
Q 019340          183 QPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GYVRAMYNTSLCYSFG  252 (342)
Q Consensus       183 ~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~~~~a~~~lg~~y~~g  252 (342)
                      ..+++..|..-|..-++..     -+.|+|+||.+++.    .++++.|...|..++..     .-+++++.||.+... 
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-  227 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-  227 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-
Confidence            3445555555555554421     24555555555554    44555555555555443     134555555555532 


Q ss_pred             CCCcccHHHHHHHHHHHHHc
Q 019340          253 EGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~~  272 (342)
                         .++.++|...|++.++.
T Consensus       228 ---l~~~d~A~atl~qv~k~  244 (262)
T COG1729         228 ---LGNTDEACATLQQVIKR  244 (262)
T ss_pred             ---hcCHHHHHHHHHHHHHH
Confidence               22555555555555544

>smart00671 SEL1 Sel1-like repeats

Probab=97.84  E-value=3.4e-05  Score=45.18  Aligned_cols=33  Identities=33%  Similarity=0.571  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      +++.||.+|..|.|+++|..+|+.||++|++.+
T Consensus         3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g   35 (36)
T smart00671        3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG   35 (36)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence            445555555555555555555555555555443

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0026  Score=56.53  Aligned_cols=214  Identities=14%  Similarity=0.032  Sum_probs=137.3

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE  149 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~  149 (342)
                      ....+...++..|..++.-.... .+-........+|.||.+    .+|+++|+..|.-+.+..  +.+...+|+-+++.
T Consensus        29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fh----LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFH----LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY  103 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHh----hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence            33456788898997665433322 222234577789999999    689999999999998875  55667899999999


Q ss_pred             CCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          150 MDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      .|.+.+|...-.++.+. -....+++|+.-+      +.++-+..|...+... .+-+..|+.+.+.    ...+++|+.
T Consensus       104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl------ndEk~~~~fh~~LqD~-~EdqLSLAsvhYm----R~HYQeAId  172 (557)
T KOG3785|consen  104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL------NDEKRILTFHSSLQDT-LEDQLSLASVHYM----RMHYQEAID  172 (557)
T ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHh------CcHHHHHHHHHHHhhh-HHHHHhHHHHHHH----HHHHHHHHH
Confidence            99999998877666543 1223444444322      2244555565554432 3556666666554    446899999


Q ss_pred             HHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          229 WYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       229 ~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .|++.+..+  ....-.+++.||..-.    -++.+.+.++--+.+  +++-+.+-++...++.=+-.-|..-.+...+.
T Consensus       173 vYkrvL~dn~ey~alNVy~ALCyyKlD----Yydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN  248 (557)
T KOG3785|consen  173 VYKRVLQDNPEYIALNVYMALCYYKLD----YYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN  248 (557)
T ss_pred             HHHHHHhcChhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence            999988653  3445578899985422    567777777777765  44555555555555543333444444444444


Q ss_pred             C
Q 019340          305 G  305 (342)
Q Consensus       305 ~  305 (342)
                      +
T Consensus       249 ~  249 (557)
T KOG3785|consen  249 I  249 (557)
T ss_pred             c
Confidence            3

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.81  E-value=0.014  Score=48.45  Aligned_cols=209  Identities=20%  Similarity=0.144  Sum_probs=144.6

Q ss_pred             CCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHcCCccCHHHH
Q 019340          119 KNLDKALDSFLKGAARGS----TLAMVDAGLMYWEMDKKEAAISLYRQAAV----LGDPAGQFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~g~~~~~~~A  190 (342)
                      .....+...+........    .......+..+...+++..++..+.....    ......++.++.++.  ..+++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  114 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLE--ALGKYEEA  114 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH--HHhhHHHH
Confidence            456667777777776542    57778888888888899999888888864    356677778888887  77788889


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHH
Q 019340          191 VKLLYQASIA--GHVRAQYQLAL-CLHRGRGVDFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQA  262 (342)
Q Consensus       191 ~~~~~~a~~~--~~~~a~~~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A  262 (342)
                      +..+.++...  .........+. ++..    .+++++|...|.+++...     ........+..+..    ..++.++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a  186 (291)
T COG0457         115 LELLEKALALDPDPDLAEALLALGALYE----LGDYEEALELYEKALELDPELNELAEALLALGALLEA----LGRYEEA  186 (291)
T ss_pred             HHHHHHHHcCCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH----hcCHHHH
Confidence            9999888774  33334444444 5555    668889999998887742     23444555554432    2388889


Q ss_pred             HHHHHHHHHc--C-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          263 RKWMKRAADC--G-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       263 ~~~~~~a~~~--~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      +..+.++...  . .......++..+...+++++|...+..++...+.  ...........  ..+..+.+.....+...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL--ELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH--HcCCHHHHHHHHHHHHH
Confidence            9998888876  3 3567788888888888899999999998887764  33333333333  33456666666665554


Q ss_pred             CC
Q 019340          338 MP  339 (342)
Q Consensus       338 ~~  339 (342)
                      ..
T Consensus       265 ~~  266 (291)
T COG0457         265 LD  266 (291)
T ss_pred             hC
Confidence            43

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00053  Score=61.88  Aligned_cols=140  Identities=19%  Similarity=0.110  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG  218 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~  218 (342)
                      -.-.-|..|+..|++..|+..|++|+..-+          |.  ..-+.++.     +.+..--..++.||+.||..   
T Consensus       210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~----------~~--~~~~~ee~-----~~~~~~k~~~~lNlA~c~lK---  269 (397)
T KOG0543|consen  210 RKKERGNVLFKEGKFKLAKKRYERAVSFLE----------YR--RSFDEEEQ-----KKAEALKLACHLNLAACYLK---  269 (397)
T ss_pred             HHHHhhhHHHhhchHHHHHHHHHHHHHHhh----------cc--ccCCHHHH-----HHHHHHHHHHhhHHHHHHHh---
Confidence            345678899999999999999999885310          00  00011000     00011112344555555554   


Q ss_pred             CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH-H
Q 019340          219 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM-K  293 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~-~  293 (342)
                       .+++.+|+.+..+++..  ++..|+|.-|.++.. .|   +++.|+..|+++++.  ++..+...|..+-....++. +
T Consensus       270 -l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~---e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  270 -LKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LG---EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             -hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence             44555555555555544  355555555555533 22   555555555555543  33444444444444433322 2


Q ss_pred             HHHHHHHHHH
Q 019340          294 AVVYLELATR  303 (342)
Q Consensus       294 A~~~~~~a~~  303 (342)
                      ..+.|.+...
T Consensus       345 ekk~y~~mF~  354 (397)
T KOG0543|consen  345 EKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhh
Confidence            3445554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.80  E-value=0.00059  Score=62.91  Aligned_cols=108  Identities=20%  Similarity=0.116  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      ++++.|+.+|++..+.. +++...+++++...++-.+|+..+.+++..  .+.+.+...+..+.  ..++++.|+...++
T Consensus       183 ~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl--~k~~~~lAL~iAk~  259 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL--SKKKYELALEIAKK  259 (395)
T ss_pred             ccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHH
Confidence            55666777766655533 455556666666666666777777776654  34555555566666  56666777777777


Q ss_pred             HHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          197 ASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       197 a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +++.  .+.+.|+.|+.||..    .++++.|+..++.+
T Consensus       260 av~lsP~~f~~W~~La~~Yi~----~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  260 AVELSPSEFETWYQLAECYIQ----LGDFENALLALNSC  294 (395)
T ss_pred             HHHhCchhHHHHHHHHHHHHh----cCCHHHHHHHHhcC
Confidence            6653  456667777777766    55666666555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.80  E-value=0.00047  Score=52.34  Aligned_cols=96  Identities=22%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHh
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG------HVRAQYQLALCLH  214 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~  214 (342)
                      -|.+..+.|+.+.|++.|.+++..  ..+.++.|-+..+.  -.++.++|+.-+.++++..      -..++..-|.+|.
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R--Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR--LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH--HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            455666889999999999999876  78899999999998  8889999999999998863      1345667777777


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019340          215 RGRGVDFNLQEAARWYLRAAEGGYVRAMYN  244 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~  244 (342)
                      .    .++.+.|..-|..|++.|..-+...
T Consensus       127 l----~g~dd~AR~DFe~AA~LGS~FAr~Q  152 (175)
T KOG4555|consen  127 L----LGNDDAARADFEAAAQLGSKFAREQ  152 (175)
T ss_pred             H----hCchHHHHHhHHHHHHhCCHHHHHH
Confidence            6    6677788888888877776655443

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=97.78  E-value=5.1e-05  Score=45.33  Aligned_cols=35  Identities=40%  Similarity=0.708  Sum_probs=20.8

Q ss_pred             HHHHHHH--HHHHcCC-CCcccHHHHHHHHHHHHHcCC
Q 019340          240 RAMYNTS--LCYSFGE-GLPLSHRQARKWMKRAADCGH  274 (342)
Q Consensus       240 ~a~~~lg--~~y~~g~-g~~~~~~~A~~~~~~a~~~~~  274 (342)
                      .|++.||  .+|..|. |+++|.++|+.||++|++.||
T Consensus         2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            4566666  5555665 566666666666666666543

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=97.77  E-value=3.9e-05  Score=45.86  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=32.1

Q ss_pred             HHHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHhCCC
Q 019340          101 AMVLLRWG--KRFKHGR-GVRKNLDKALDSFLKGAARGS  136 (342)
Q Consensus       101 a~a~~~lg--~~y~~g~-g~~~~~~~A~~~~~~A~~~~~  136 (342)
                      |.+++.||  .+|..|. |+++|.++|+.||++|++.||
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            56889999  8889999 899999999999999999875

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.76  E-value=6.9e-05  Score=50.89  Aligned_cols=48  Identities=17%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL  166 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~  166 (342)
                      +++++|+.+|++++..  ++..+.+.+|.+|...|++++|...++++...
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5677777777777664  46677777777777777777777777776654

...

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.75  E-value=0.0095  Score=56.91  Aligned_cols=207  Identities=12%  Similarity=0.051  Sum_probs=127.5

Q ss_pred             cCCHHHHHHHHHHHHhC-------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHcCC
Q 019340          118 RKNLDKALDSFLKGAAR-------G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD------PAGQFNLGISYLQAQ  183 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~-------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~g~  183 (342)
                      +++..+-+..|..|+..       | ....+..+|.+|...|+.+.|...|++|..-..      ...|.+-|..-.  .
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl--r  437 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL--R  437 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH--h
Confidence            46677888888888874       3 335677888899888999999999999886532      345566665555  6


Q ss_pred             ccCHHHHHHHHHHHHHc-CC-------------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Q 019340          184 PANAEEAVKLLYQASIA-GH-------------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRA  241 (342)
Q Consensus       184 ~~~~~~A~~~~~~a~~~-~~-------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a  241 (342)
                      .++++.|+.+.++|... ..                   ...|..++..-+.    .+-++.....|.+.+++  -.|..
T Consensus       438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs----~gtfestk~vYdriidLriaTPqi  513 (835)
T KOG2047|consen  438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES----LGTFESTKAVYDRIIDLRIATPQI  513 (835)
T ss_pred             hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhcCCHHH
Confidence            77888888888887541 11                   1222223332222    33566777778887776  46667


Q ss_pred             HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-------hhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340          242 MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-------LFTEGEMMKAVVYLELATRAGETAADHVKN  314 (342)
Q Consensus       242 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~-------~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~  314 (342)
                      -.|.|..+..    .+-++++.+.|++.+..=..+..+.+=..       -+.....+.|...|++|++..++.....+=
T Consensus       514 i~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy  589 (835)
T KOG2047|consen  514 IINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY  589 (835)
T ss_pred             HHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            7777777755    33678888888888776222222111111       223447888888888888876665544333


Q ss_pred             HHHhhc--ChhcHHHHHHHHHh
Q 019340          315 VILQQL--SATSRDRAMLVVDS  334 (342)
Q Consensus       315 ~~~~~~--~~~~~~~a~~~~~~  334 (342)
                      +++..+  .-|-...|+.++++
T Consensus       590 LlYA~lEEe~GLar~amsiyer  611 (835)
T KOG2047|consen  590 LLYAKLEEEHGLARHAMSIYER  611 (835)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH
Confidence            333333  11333444444444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.73  E-value=0.0012  Score=60.81  Aligned_cols=94  Identities=21%  Similarity=0.165  Sum_probs=43.0

Q ss_pred             cCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340          149 EMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       149 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      ..++++.|+.++++..+.+ |++...|+.++.  ..++..+|++.+.+++..  .+.+.+...+.++..    .++++.|
T Consensus       181 ~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l--~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k~~~~lA  253 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERD-PEVAVLLARVYL--LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS----KKKYELA  253 (395)
T ss_pred             hcccHHHHHHHHHHHHhcC-CcHHHHHHHHHH--hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Confidence            3455555555555544433 445555555555  334445555555555542  233444444444443    3334444


Q ss_pred             HHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          227 ARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       227 ~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      +...++|++.  .+...|+.|+.+|
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Y  278 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECY  278 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4444444433  2333444444444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.72  E-value=8.7e-05  Score=50.39  Aligned_cols=61  Identities=25%  Similarity=0.270  Sum_probs=42.6

Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLA  210 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  210 (342)
                      ...|++++|+..|++++..  +++++.+.+|.+|.  ..|++++|..++++++...  ++..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL--KQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH--HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3567888888888887643  77888888888888  7778888888888776542  355554444

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.70  E-value=0.013  Score=47.54  Aligned_cols=126  Identities=13%  Similarity=-0.007  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLL  194 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~  194 (342)
                      -|++..+.-..+.++.- ...-.+.||....+.|++.+|+..|++++.-   +++..+..++.+.+  ..+++..|...+
T Consensus        70 ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf--a~~~~A~a~~tL  147 (251)
T COG4700          70 LDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF--AIQEFAAAQQTL  147 (251)
T ss_pred             cChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH--hhccHHHHHHHH
Confidence            45555544444444432 2344578889999999999999999998864   78888888888888  888999999999


Q ss_pred             HHHHHcC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Q 019340          195 YQASIAG----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCYS  250 (342)
Q Consensus       195 ~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~y~  250 (342)
                      ++..+-.    .|+....+|..|.-    .+.+..|...|+-+++- ..+.+-...+.++.
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa----~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La  204 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAA----QGKYADAESAFEVAISYYPGPQARIYYAEMLA  204 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHh----cCCchhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            8887743    56777778888775    34667777777777765 45555555555553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.67  E-value=0.00031  Score=48.36  Aligned_cols=53  Identities=25%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      .+|...+++++|++++++++..  +++..++..|.++.  ..+++.+|+..|+++++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~--~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF--QLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH--HhccHHHHHHHHHHHHH
Confidence            3444455555555555554433  44445555555555  44555555555555444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.62  E-value=0.012  Score=48.99  Aligned_cols=199  Identities=13%  Similarity=0.043  Sum_probs=128.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..+|.-|.+|..    .|-..-|.--|.+++..  .-+++..-||.-+...|+++.|.+.|.-..+.  +..-+..|-
T Consensus        64 RA~l~fERGvlYDS----lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          64 RAQLLFERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             HHHHHHHhcchhhh----hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            56677888888877    35566677777777765  47888889999999999999999999999877  556788888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHCC-CHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLR-AAEGG-YVRAMYNTSLCYSF  251 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~-A~~~~-~~~a~~~lg~~y~~  251 (342)
                      |..+++|  |++.-|.+-+.+--+.  .+|---.   .+|....  .-|+++|..-+.. +-..+ .-..++..+..+ -
T Consensus       140 gi~~YY~--gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-g  211 (297)
T COG4785         140 GIALYYG--GRYKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQ--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-G  211 (297)
T ss_pred             ceeeeec--CchHhhHHHHHHHHhcCCCChHHHH---HHHHHHh--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-h
Confidence            8887754  5788887777765443  3432211   1232211  5578888876654 44333 233333333322 2


Q ss_pred             CCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-cHHHHHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG-ETAADHVKN  314 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~~~  314 (342)
                      ..    ..+...+-...-+..      --.+.++.||..|...|+.++|...|+.|+..+ +.-..+...
T Consensus       212 ki----S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA  277 (297)
T COG4785         212 KI----SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYA  277 (297)
T ss_pred             hc----cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            12    122222221111111      124678999999999999999999999999875 333333333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.62  E-value=0.04  Score=52.83  Aligned_cols=215  Identities=15%  Similarity=0.031  Sum_probs=137.2

Q ss_pred             CChhHHhhHHHHHHHHHHhCcC---CCH-HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC------HHHHHHHHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPL---REA-MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS------TLAMVDAGLM  146 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~---~~a-~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~------~~a~~~lg~~  146 (342)
                      ..++..+-...+....+.....   |.. ..+..+|..|..    .++.+.|...|++|.....      +..+.+-|.+
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~----~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem  434 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN----NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM  434 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh----cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence            3444444444444444443221   221 355668999998    5899999999999998742      4567788888


Q ss_pred             HhcCCCHHHHHHHHHHHHhC-CC-------------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHH
Q 019340          147 YWEMDKKEAAISLYRQAAVL-GD-------------------PAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVR  204 (342)
Q Consensus       147 ~~~~~~~~~A~~~~~~a~~~-~~-------------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~  204 (342)
                      -....+++.|+++.++|... ..                   ...|..++..-.  ..|-++.-...|.+.++..  .|.
T Consensus       435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE--s~gtfestk~vYdriidLriaTPq  512 (835)
T KOG2047|consen  435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE--SLGTFESTKAVYDRIIDLRIATPQ  512 (835)
T ss_pred             HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCCHH
Confidence            88889999999999998733 11                   112222233222  3556677777888887764  678


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------cCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340          205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS------FGEGLPLSHRQARKWMKRAADCGHGKAQ  278 (342)
Q Consensus       205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~------~g~g~~~~~~~A~~~~~~a~~~~~~~a~  278 (342)
                      ...|.|.++..    .+-++++++.|++-+.+-.....+.+=..|.      .|.   ...+.|...|++|++.-++...
T Consensus       513 ii~NyAmfLEe----h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg---~klEraRdLFEqaL~~Cpp~~a  585 (835)
T KOG2047|consen  513 IIINYAMFLEE----HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG---TKLERARDLFEQALDGCPPEHA  585 (835)
T ss_pred             HHHHHHHHHHh----hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcCCHHHH
Confidence            88888888876    5568889999988887633222222222222      222   2788899999999986554433


Q ss_pred             H----HHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          279 L----EHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       279 ~----~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      -    ..+.+-..-|--..|+..|++|...
T Consensus       586 KtiyLlYA~lEEe~GLar~amsiyerat~~  615 (835)
T KOG2047|consen  586 KTIYLLYAKLEEEHGLARHAMSIYERATSA  615 (835)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            2    2333333356666677777776554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.57  E-value=0.00047  Score=47.43  Aligned_cols=62  Identities=13%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHH
Q 019340          108 GKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQF  173 (342)
Q Consensus       108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~  173 (342)
                      ..+|..    .+++++|+..+++++..+  ++..++..|.++...|++++|+..|+++++.  +++.+..
T Consensus         2 ~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQ----QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHh----CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            455666    589999999999999974  7888999999999999999999999999876  4444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.55  E-value=0.00017  Score=44.39  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      .+++.+|..|...|++++|+.+|+++++.  ++++++..||.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45666677777777777777777776644  66666666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.023  Score=48.72  Aligned_cols=220  Identities=11%  Similarity=0.013  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYL  180 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~  180 (342)
                      .-+|.+-..|..     |++.+++..-++.-.. +...-.+-+.+.|...|.+..-+.-...+. ...-.|...++.+..
T Consensus        10 d~LF~iRn~fY~-----Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~lqAvr~~a~~~~   83 (299)
T KOG3081|consen   10 DELFNIRNYFYL-----GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPLQAVRLLAEYLE   83 (299)
T ss_pred             hhHHHHHHHHHh-----hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc-CChHHHHHHHHHHhh
Confidence            456666666666     4788888777776554 566666667777777766544443332222 233445555555554


Q ss_pred             cCCccCHHHHHHHHHH-HHHc-C--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc
Q 019340          181 QAQPANAEEAVKLLYQ-ASIA-G--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       181 ~g~~~~~~~A~~~~~~-a~~~-~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~  256 (342)
                        .+++.++-+.-... .+.. +  +.-.+..-|.+|.+    .+++++|.+...+   .+..++...=-.++.+    .
T Consensus        84 --~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~----~~~~deAl~~~~~---~~~lE~~Al~VqI~lk----~  150 (299)
T KOG3081|consen   84 --LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH----DGDFDEALKALHL---GENLEAAALNVQILLK----M  150 (299)
T ss_pred             --CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc----CCChHHHHHHHhc---cchHHHHHHHHHHHHH----H
Confidence              44554444444333 3333 2  33344445566766    5689999988877   2233333222233322    2


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340          257 LSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVV  332 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~  332 (342)
                      ...+-|.+-+++..+.++-..+..|+..+..    .+.+.+|+.+|+.-.+.-++......+....++..+++++|+.++
T Consensus       151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence            3788889999998888777777777777755    447999999999999988888888899999999999999999999


Q ss_pred             HhhhcCCC
Q 019340          333 DSWRAMPS  340 (342)
Q Consensus       333 ~~~~~~~~  340 (342)
                      ++.+...+
T Consensus       231 ~eaL~kd~  238 (299)
T KOG3081|consen  231 EEALDKDA  238 (299)
T ss_pred             HHHHhccC
Confidence            98876554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0017  Score=59.83  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=81.1

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHH-HHHhCc---CC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSW-NDALRP---LR---EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---  134 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~---~~---~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---  134 (342)
                      +...+-+....|..||+.+|..++-.- ....+.   .+   .-..+.+||.++.+    .+.+.-+..+|.+|++.   
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~  315 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCS  315 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee----hhhHHHHHHHHHHHHHHHHH
Confidence            445556666678899999987654221 111111   00   11345678877777    57888889999998851   


Q ss_pred             ----C-------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 019340          135 ----G-------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL  180 (342)
Q Consensus       135 ----~-------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  180 (342)
                          |             .-+..|+.|..|...|++-.|.++|.+++..  .+|..|..|+.|..
T Consensus       316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                1             3467899999999999999999999999976  88999999998765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.46  E-value=0.019  Score=52.40  Aligned_cols=169  Identities=17%  Similarity=0.116  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHc---CCHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIA---GHVRA  205 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~---~~~~a  205 (342)
                      +++...++=..|...+|++.-+++.+..-..      ..+...+.+|.++.. ...|+.++|+..+..++..   .+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4556667777788889999999998886543      456777788888773 3389999999999996654   37899


Q ss_pred             HHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHc-CCCCcccHHHHHHHH----HHHHHcC-
Q 019340          206 QYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSF-GEGLPLSHRQARKWM----KRAADCG-  273 (342)
Q Consensus       206 ~~~lg~~~~~g-----~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~-g~g~~~~~~~A~~~~----~~a~~~~-  273 (342)
                      +..+|.+|.+-     .......++|+.+|.++.+.. +...-.|++.++.. |.. ..+..+..+.-    ....+.+ 
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~-~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD-FETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHHHhhcc
Confidence            99999998642     112345899999999998874 44444566666533 321 11222222222    1112222 


Q ss_pred             --CHHHH---HHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          274 --HGKAQ---LEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       274 --~~~a~---~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                        ....+   -.++.+..-.||+++|..+++++....
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence              22223   334444555899999999999999885

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.42  E-value=0.026  Score=45.86  Aligned_cols=110  Identities=10%  Similarity=0.068  Sum_probs=92.7

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQ  172 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~  172 (342)
                      -..-.+.||.....    .|++.+|..+|++++.-   +++..+..++...+..+++..|...+++..+-    ..|+.+
T Consensus        88 Tvqnr~rLa~al~e----lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          88 TVQNRYRLANALAE----LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hHHHHHHHHHHHHH----hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            34556788888887    58999999999999984   68889999999999999999999999999875    467899


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQYQLALCLHR  215 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~  215 (342)
                      ..+|..|.  ..|.+..|...|+.++.- ..+.+-...+.++..
T Consensus       164 Ll~aR~la--a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~  205 (251)
T COG4700         164 LLFARTLA--AQGKYADAESAFEVAISYYPGPQARIYYAEMLAK  205 (251)
T ss_pred             HHHHHHHH--hcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999  888999999999998875 456666666666654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.39  E-value=0.00038  Score=40.04  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      +.+++++|.+|...|++++|+.+|++|+++++.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467899999999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.053  Score=46.04  Aligned_cols=93  Identities=23%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPA  170 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~  170 (342)
                      .+..-+.+|..    .+++++|-..+.+|++- .+       +.++-..+.+..+...+.+++.+|++|...    |.|+
T Consensus        33 ~yekAAvafRn----Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   33 LYEKAAVAFRN----AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             HHHHHHHHHHh----hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence            34444455555    46777777777777642 11       223334444455556777777777777533    4433


Q ss_pred             -HHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          171 -GQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       171 -a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                       |-..|+.+-.--+..++++|+..|++++.
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqrala  138 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALA  138 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence             22223332221135567777777777554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.038  Score=46.88  Aligned_cols=191  Identities=17%  Similarity=0.093  Sum_probs=101.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC-------HHHHHHHHHHHHcCCccCHHH
Q 019340          118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GD-------PAGQFNLGISYLQAQPANAEE  189 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~-------~~a~~~Lg~~~~~g~~~~~~~  189 (342)
                      +.|++-|...|.+|+            ..|...+++++|...+++|++- .+       +.++-..+.+..  +.....+
T Consensus        24 kad~dgaas~yekAA------------vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak--e~~klsE   89 (308)
T KOG1585|consen   24 KADWDGAASLYEKAA------------VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK--ELSKLSE   89 (308)
T ss_pred             CCCchhhHHHHHHHH------------HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HHHHhHH
Confidence            356777777776654            3566667777777777777632 11       233334444444  5667777


Q ss_pred             HHHHHHHHHH----cCCHH----HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---C--CHHH---HHHHHHHHHcCC
Q 019340          190 AVKLLYQASI----AGHVR----AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---G--YVRA---MYNTSLCYSFGE  253 (342)
Q Consensus       190 A~~~~~~a~~----~~~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~--~~~a---~~~lg~~y~~g~  253 (342)
                      +..+|+|+..    .|.++    +.-.-|.+..     ..++++|+.+|++++..   +  .-.+   +-..++++.++.
T Consensus        90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~  164 (308)
T KOG1585|consen   90 VVDLYEKASELYVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE  164 (308)
T ss_pred             HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence            7888887754    34332    2233344443     45778888888877652   1  2233   233444454432


Q ss_pred             CCcccHHHHHHHHHHHHH----c---CC-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc----CcHHHHHHHHHHHhhcC
Q 019340          254 GLPLSHRQARKWMKRAAD----C---GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA----GETAADHVKNVILQQLS  321 (342)
Q Consensus       254 g~~~~~~~A~~~~~~a~~----~---~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~~~~~~~~~~  321 (342)
                          .+.+|...+.+-..    .   ++ -.++..+..+|....|+..|..+|+.-...    ++.+... +..++..-.
T Consensus       165 ----kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~-lenLL~ayd  239 (308)
T KOG1585|consen  165 ----KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS-LENLLTAYD  239 (308)
T ss_pred             ----HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH-HHHHHHHhc
Confidence                55555555544211    1   11 233444445556666788888887775543    2333333 233333344


Q ss_pred             hhcHHHHHHHH
Q 019340          322 ATSRDRAMLVV  332 (342)
Q Consensus       322 ~~~~~~a~~~~  332 (342)
                      .++.++...++
T Consensus       240 ~gD~E~~~kvl  250 (308)
T KOG1585|consen  240 EGDIEEIKKVL  250 (308)
T ss_pred             cCCHHHHHHHH
Confidence            55555554443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.29  E-value=0.0004  Score=39.86  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      +.+++.+|.+|...|++++|+.+|++++++.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            467889999999999999999999999987653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.28  E-value=0.0079  Score=46.90  Aligned_cols=76  Identities=21%  Similarity=0.302  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PA  170 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~  170 (342)
                      +..+|.-|.-...    .+++++|++.|+..-..   |  -..+.+.||..|...+++++|+..+++-+++  .+   +.
T Consensus        10 ~~~ly~~a~~~l~----~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY   85 (142)
T PF13512_consen   10 PQELYQEAQEALQ----KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY   85 (142)
T ss_pred             HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence            4455555655555    46777777777766554   1  3456677777777777777777777776655  22   45


Q ss_pred             HHHHHHHHHH
Q 019340          171 GQFNLGISYL  180 (342)
Q Consensus       171 a~~~Lg~~~~  180 (342)
                      ++|..|.+++
T Consensus        86 a~Y~~gL~~~   95 (142)
T PF13512_consen   86 AYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHHHH
Confidence            6666666665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.25  E-value=0.00076  Score=41.46  Aligned_cols=41  Identities=29%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340          169 PAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL  211 (342)
Q Consensus       169 ~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~  211 (342)
                      |++++.||.+|.  ..|++++|+++|+++++  +++++++..||.
T Consensus         1 p~~~~~la~~~~--~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR--RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456778888888  78888888888888766  467888877765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.22  E-value=0.069  Score=55.57  Aligned_cols=188  Identities=14%  Similarity=0.050  Sum_probs=117.6

Q ss_pred             CCHHHHHHHHHHHHhC-C---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCccCH
Q 019340          119 KNLDKALDSFLKGAAR-G---------STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD-PAGQFNLGISYLQAQPANA  187 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~-~---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~~g~~~~~  187 (342)
                      .+.++|.+.+++|+.. +         -.-|++||=..|   |.-+.-.+.|++|++--+ -..+..|..+|.  ....+
T Consensus      1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~~~V~~~L~~iy~--k~ek~ 1546 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDAYTVHLKLLGIYE--KSEKN 1546 (1710)
T ss_pred             hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcchHHHHHHHHHHHH--Hhhcc
Confidence            5777888888887763 1         112223333222   566666777888877744 456666777777  66677


Q ss_pred             HHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          188 EEAVKLLYQASIA-G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       188 ~~A~~~~~~a~~~-~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      ++|.++|+..++. + ....|..+|..+..    ..+-+.|...+.+|+.-    .+..---..+.+- ...|   |.+.
T Consensus      1547 ~~A~ell~~m~KKF~q~~~vW~~y~~fLl~----~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE-Fk~G---DaeR 1618 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKFGQTRKVWIMYADFLLR----QNEAEAARELLKRALKSLPKQEHVEFISKFAQLE-FKYG---DAER 1618 (1710)
T ss_pred             hhHHHHHHHHHHHhcchhhHHHHHHHHHhc----ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH-hhcC---Cchh
Confidence            7888888877765 3 56777777777765    34456677777777764    2333333444443 2334   7777


Q ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019340          262 ARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQ  319 (342)
Q Consensus       262 A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~  319 (342)
                      +...|+-.+...  ..+-|.-+...-...|+.+..+..|++++.++  +..+.+.....+.+
T Consensus      1619 GRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             hHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence            777777776554  24455555555566778888888888888775  44555554444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.13  E-value=0.014  Score=45.60  Aligned_cols=79  Identities=16%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-----CHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-----HVR  204 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~  204 (342)
                      ..+..++.-|...+..|++++|++.|+..-..     --..+...|+.+|+  ..+++++|+..+++-+++.     -+-
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy--~~~~y~~A~a~~~rFirLhP~hp~vdY   85 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY--KQGDYEEAIAAYDRFIRLHPTHPNVDY   85 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCCCccH
Confidence            35677888888888999999999999988765     23678999999999  8899999999999988742     456


Q ss_pred             HHHHHHHHHhc
Q 019340          205 AQYQLALCLHR  215 (342)
Q Consensus       205 a~~~lg~~~~~  215 (342)
                      ++|..|.++..
T Consensus        86 a~Y~~gL~~~~   96 (142)
T PF13512_consen   86 AYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHHHHHH
Confidence            78888888764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.08  E-value=0.074  Score=50.76  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=104.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCHHH-H-------HHHHHHHHcCC---ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcC
Q 019340          150 MDKKEAAISLYRQAAVLGDPAG-Q-------FNLGISYLQAQ---PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRG  216 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~~~~~a-~-------~~Lg~~~~~g~---~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g  216 (342)
                      .||-+.++..+.++.+.++..+ +       |+++...+.+.   ..+.+.+.+.+....+  ++.+--.+.-|.++.. 
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-  279 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL-  279 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence            4899999999999887754322 1       11222222233   5577788888887776  5666667778888876 


Q ss_pred             CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhh
Q 019340          217 RGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFT  287 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~  287 (342)
                         .+|.++|+++|++++...      ..-..+.+++++..    ..++++|..+|.+..+...   +--.|..|.++..
T Consensus       280 ---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  280 ---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM  352 (468)
T ss_pred             ---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence               778999999999887532      34467888888865    4499999999999988644   3334678888888


Q ss_pred             cCCH-------HHHHHHHHHHHHc
Q 019340          288 EGEM-------MKAVVYLELATRA  304 (342)
Q Consensus       288 ~~~~-------~~A~~~~~~a~~~  304 (342)
                      .++.       ++|..+|+++-..
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHH
Confidence            8888       8888888877543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.05  E-value=0.26  Score=51.57  Aligned_cols=191  Identities=13%  Similarity=0.050  Sum_probs=141.5

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhC------cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCH-HH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGST-LA  139 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~-~a  139 (342)
                      ..+.-.+.++..++...|..+..+++....      ..+-+.|+++|=.+|       |.-+.-.+.|++|++..++ ..
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-------G~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-------GTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-------CcHHHHHHHHHHHHHhcchHHH
Confidence            344555556788999999888888877652      123356777776666       5677788999999997654 56


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL-G-DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCL  213 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~-~-~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~  213 (342)
                      +..|..+|.....+++|.++|+.-++. + ....|..+|..++  ...+-+.|...+.+|++.    .+.+.....+.+-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl--~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL--RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh--cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            779999999999999999999999977 4 6889999999988  666778888999999873    3566666666665


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340          214 HRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH  274 (342)
Q Consensus       214 ~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  274 (342)
                      +.    .+|.+.+...|+-.+...  -.+.|.-+..+- .+.|   +.+.....|++++..+-
T Consensus      1611 Fk----~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e-ik~~---~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FK----YGDAERGRTLFEGLLSAYPKRTDLWSVYIDME-IKHG---DIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             hh----cCCchhhHHHHHHHHhhCccchhHHHHHHHHH-HccC---CHHHHHHHHHHHHhcCC
Confidence            55    567888888888766543  344444444443 2333   88999999999998743

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.02  E-value=0.14  Score=46.92  Aligned_cols=172  Identities=11%  Similarity=0.050  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHhC---C
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWE---MDKKEAAISLYRQAAVL---G  167 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~  167 (342)
                      .+...++|=..|..    -+|++.-+.+.+..-..      ..+...+..|.++-+   .||.++|+..+..++..   .
T Consensus       140 s~div~~lllSyRd----iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~  215 (374)
T PF13281_consen  140 SPDIVINLLLSYRD----IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP  215 (374)
T ss_pred             ChhHHHHHHHHhhh----hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence            34556666667776    58999999998886554      356777888888888   79999999999997654   6


Q ss_pred             CHHHHHHHHHHHHc-------CCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHh-cCCCCCCCHHHHHHHH----HHHH
Q 019340          168 DPAGQFNLGISYLQ-------AQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH-RGRGVDFNLQEAARWY----LRAA  234 (342)
Q Consensus       168 ~~~a~~~Lg~~~~~-------g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~----~~A~  234 (342)
                      +++.+..+|.+|..       .+....++|+.+|+++.+.. +.-.--|++.++. .|.... +-.+..+.-    ....
T Consensus       216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~-~~~el~~i~~~l~~llg  294 (374)
T PF13281_consen  216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFE-TSEELRKIGVKLSSLLG  294 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCccc-chHHHHHHHHHHHHHHH
Confidence            78999999999973       12446899999999998865 2222235555544 333222 111212211    1222


Q ss_pred             HCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 019340          235 EGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ  278 (342)
Q Consensus       235 ~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~  278 (342)
                      +.+   ...-++.+|....-.. ...|+++|.++++++.... +++|
T Consensus       295 ~kg~~~~~~dYWd~ATl~Ea~v-L~~d~~ka~~a~e~~~~l~-~~~W  339 (374)
T PF13281_consen  295 RKGSLEKMQDYWDVATLLEASV-LAGDYEKAIQAAEKAFKLK-PPAW  339 (374)
T ss_pred             hhccccccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhcC-Ccch
Confidence            222   2333444444443221 1349999999999999875 4444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.97  E-value=0.32  Score=45.34  Aligned_cols=245  Identities=14%  Similarity=0.059  Sum_probs=138.3

Q ss_pred             HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHH-----HHHHHhCC--CHHHHHHHHHHHhcCCCHH
Q 019340           82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDS-----FLKGAARG--STLAMVDAGLMYWEMDKKE  154 (342)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~-----~~~A~~~~--~~~a~~~lg~~~~~~~~~~  154 (342)
                      .+|..+++-.+...+. +.++-+|.-=..+....|...-.++++-.     |++-+..+  +.++++..-.+....|+.+
T Consensus       261 ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~  339 (677)
T KOG1915|consen  261 ERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD  339 (677)
T ss_pred             HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence            3344444444443332 23333333223333333444445555532     34444433  6788888888888889999


Q ss_pred             HHHHHHHHHHhCCCHH---------HHHHHHHHHHc-CCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCC
Q 019340          155 AAISLYRQAAVLGDPA---------GQFNLGISYLQ-AQPANAEEAVKLLYQASIAG------HVRAQYQLALCLHRGRG  218 (342)
Q Consensus       155 ~A~~~~~~a~~~~~~~---------a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~  218 (342)
                      .-.+.|++|+..-.|.         .+..+-.+++. -+..|.+.+.+.|+..++.-      .+..+...+..-..   
T Consensus       340 ~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR---  416 (677)
T KOG1915|consen  340 RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR---  416 (677)
T ss_pred             HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH---
Confidence            9999999998663331         12222233221 13678888888888887742      23444444444433   


Q ss_pred             CCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH--HHHHHHHHhhhcCCHH
Q 019340          219 VDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK--AQLEHGLGLFTEGEMM  292 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~--a~~~Lg~~~~~~~~~~  292 (342)
                       ..|...|.+.+..|+-.-.    ...+..|-.-+       ++++.....|++-++-++..  ++...|.+-...|+.+
T Consensus       417 -q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL-------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd  488 (677)
T KOG1915|consen  417 -QLNLTGARKILGNAIGKCPKDKLFKGYIELELQL-------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD  488 (677)
T ss_pred             -HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH-------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence             4467777777777664321    12222222222       26777777777777765443  4455566666678888


Q ss_pred             HHHHHHHHHHHcCcHHHH--HHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          293 KAVVYLELATRAGETAAD--HVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       293 ~A~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      .|...|+.|+...--+.-  .-...+--..+.++.+.++.++++++..
T Consensus       489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            888888888776532222  2233344445677777788777777654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.95  E-value=0.0016  Score=38.03  Aligned_cols=28  Identities=29%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ++.+||.+|...|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999997654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.95  E-value=0.21  Score=42.86  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C---CHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G---HVR  204 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~---~~~  204 (342)
                      ..+.-+++-|...+..|++++|+..|+......     ...++..++.+++  ..+++++|+.+..+-+..  +   -.-
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            355566666777777888888888888877541     2567888888888  777888888888886663  2   345


Q ss_pred             HHHHHHHHHhcCCC-CCCCHHHHH
Q 019340          205 AQYQLALCLHRGRG-VDFNLQEAA  227 (342)
Q Consensus       205 a~~~lg~~~~~g~~-~~~~~~~A~  227 (342)
                      ++|..|.++..+.. +..|..-+.
T Consensus       110 ~~YlkgLs~~~~i~~~~rDq~~~~  133 (254)
T COG4105         110 AYYLKGLSYFFQIDDVTRDQSAAR  133 (254)
T ss_pred             HHHHHHHHHhccCCccccCHHHHH
Confidence            67777888776543 234443333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.92  E-value=0.0012  Score=38.11  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=25.7

Q ss_pred             HHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHH
Q 019340          265 WMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       265 ~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      +|++|++.  +++.++++||.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            36778775  67889999999999999999885

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.92  E-value=0.22  Score=42.72  Aligned_cols=171  Identities=15%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---H
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---P  169 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~  169 (342)
                      .+.-+|.-|..-.+    .||+++|+..|+......     ...+++.++..+...+++++|+....+-+.+  ++   .
T Consensus        33 p~~~LY~~g~~~L~----~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          33 PASELYNEGLTELQ----KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            45667777777777    589999999999988752     4678999999999999999999999998865  33   4


Q ss_pred             HHHHHHHHHHHcCC---ccC---HHHHHHHHHHHHHc--C---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC
Q 019340          170 AGQFNLGISYLQAQ---PAN---AEEAVKLLYQASIA--G---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY  238 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~---~~~---~~~A~~~~~~a~~~--~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~  238 (342)
                      .++|..|.+++.+.   ..|   ...|+.-|+..++.  +   -++|...+-.+                  +..+    
T Consensus       109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~------------------~d~L----  166 (254)
T COG4105         109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL------------------NDAL----  166 (254)
T ss_pred             HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH------------------HHHH----
Confidence            57888888887532   334   34555555555552  2   12333322211                  1111    


Q ss_pred             HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340          239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                      +.--..+|..|....    .+.-|+..++..++.     .-.+++..|..+|...|-.++|...-+-
T Consensus       167 A~~Em~IaryY~kr~----~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v  229 (254)
T COG4105         167 AGHEMAIARYYLKRG----AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV  229 (254)
T ss_pred             HHHHHHHHHHHHHhc----ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            222345677775522    788888888888875     1256788888888888888887765443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.88  E-value=0.056  Score=51.62  Aligned_cols=151  Identities=17%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             CCCcCCHHHHHHHHHHHHhCCCHHH----H----HHHHHHH---h--cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340          115 RGVRKNLDKALDSFLKGAARGSTLA----M----VDAGLMY---W--EMDKKEAAISLYRQAAVL--GDPAGQFNLGISY  179 (342)
Q Consensus       115 ~g~~~~~~~A~~~~~~A~~~~~~~a----~----~~lg~~~---~--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  179 (342)
                      .|..+|.+.++..+.++.+.++..+    +    ++++...   .  ...+.+.|.+.+......  +.+--.+.-|.++
T Consensus       198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE  277 (468)
T ss_pred             cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3778999999999999998643221    1    1222111   1  346788899999988874  6666777788888


Q ss_pred             HcCCccCHHHHHHHHHHHHHcC------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHH--HHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQASIAG------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRA--MYNTSLCYS  250 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a--~~~lg~~y~  250 (342)
                      .  ..++.++|+.+|++++...      ..-.++.+|.|+..    ..|+++|..+|.+..+.. -..+  .|..|.|+.
T Consensus       278 ~--~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~----~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~  351 (468)
T PF10300_consen  278 R--LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF----QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL  351 (468)
T ss_pred             H--HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH----HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            8  8999999999999887521      34567889999886    779999999999999874 3333  344555553


Q ss_pred             cCC---CCcccHHHHHHHHHHHHH
Q 019340          251 FGE---GLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       251 ~g~---g~~~~~~~A~~~~~~a~~  271 (342)
                      .-.   +.+...++|..+|+++..
T Consensus       352 ~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  352 MLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hhccchhhhhhHHHHHHHHHHHHH
Confidence            311   012233888888888865

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.85  E-value=0.0022  Score=36.61  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL  166 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~  166 (342)
                      .+++.+|.+|...|++++|+++|+++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45666666666666666666666666543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.84  E-value=0.0011  Score=38.29  Aligned_cols=30  Identities=20%  Similarity=0.220  Sum_probs=18.6

Q ss_pred             HHHHHhC--CCHHHHHHHHHHHhcCCCHHHHH
Q 019340          128 FLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI  157 (342)
Q Consensus       128 ~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~  157 (342)
                      |++|++.  +++.++++||.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            5556554  36666666666666666666664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.80  E-value=0.0026  Score=36.41  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL  166 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~  166 (342)
                      .+++++|.+|...|++++|+..|+++++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            34555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.79  E-value=0.0026  Score=37.17  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAA  164 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~  164 (342)
                      ++.+||.+|...|++++|+.+|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677777777777777777777754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.77  E-value=0.71  Score=46.26  Aligned_cols=233  Identities=13%  Similarity=0.016  Sum_probs=144.5

Q ss_pred             CCcHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHH
Q 019340           63 SLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAM  140 (342)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  140 (342)
                      .++...+.-+...+..+++..|...+....++.++...+.++  -|....+    .+..++|..+++.-...  .+...+
T Consensus         7 a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vL--kaLsl~r----~gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen    7 AMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVL--KALSLFR----LGKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             ccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHH--HHHHHHH----hcCchhHHHHHhhhccCCCCchHHH
Confidence            446666777778889999999999999999987765444444  4566666    46778888666654443  366777


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAE----EAVKLLYQASIAGHVRAQYQLALCLHR  215 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~----~A~~~~~~a~~~~~~~a~~~lg~~~~~  215 (342)
                      -.+-.+|...+..++|+.+|++++.. ..-+-++.+-.+|.  +.+++.    .|++.|+-  -+..+--....-.++.+
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv--R~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV--REKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ  156 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence            78899999999999999999999977 44677778888887  544443    34444441  11222222222233333


Q ss_pred             CCCC-C-----CCHHHHHHHHHHHHHCC-CHHH--HHHHHHHHHcCCCCcccHHHHHHHHHHH-HHc---CCHHHHHHHH
Q 019340          216 GRGV-D-----FNLQEAARWYLRAAEGG-YVRA--MYNTSLCYSFGEGLPLSHRQARKWMKRA-ADC---GHGKAQLEHG  282 (342)
Q Consensus       216 g~~~-~-----~~~~~A~~~~~~A~~~~-~~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a-~~~---~~~~a~~~Lg  282 (342)
                      +..- +     .-..-|....++-++.+ ...+  ...|=..-..+.|   .+++|...+..- ++.   .+......-+
T Consensus       157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~---k~~eal~~l~~~la~~l~~~~~~l~~~~~  233 (932)
T KOG2053|consen  157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQG---KYQEALEFLAITLAEKLTSANLYLENKKL  233 (932)
T ss_pred             hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            3211 1     11234555666666554 2222  2222111123333   799999998443 332   2222223445


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          283 LGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                      ..+...+++.+-...-.++++.++++
T Consensus       234 dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  234 DLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            55666788888888888888887775

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.76  E-value=0.024  Score=45.83  Aligned_cols=26  Identities=19%  Similarity=0.125  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340          291 MMKAVVYLELATRAGETAADHVKNVI  316 (342)
Q Consensus       291 ~~~A~~~~~~a~~~~~~~a~~~~~~~  316 (342)
                      +++|..+|++|.+..|.+..++.++-
T Consensus        96 F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   96 FEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            55666666666666666666555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.70  E-value=0.38  Score=45.21  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHH
Q 019340          171 GQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMY  243 (342)
Q Consensus       171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~~~~a~~  243 (342)
                      +...|++|..  ..|+.++|++.|+..++.    ++-..+++|-.++..    .+.+.++...+.|--+.   ..+..+|
T Consensus       261 ~KrRLAmCar--klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  261 AKRRLAMCAR--KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             hHHHHHHHHH--HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccccCCchHHHHH
Confidence            4445666666  666666666666666543    233456666666665    45566666655554322   1233333


Q ss_pred             HHHHHHHcC------------CCCcccHHHHHHHHHHHHHcCC
Q 019340          244 NTSLCYSFG------------EGLPLSHRQARKWMKRAADCGH  274 (342)
Q Consensus       244 ~lg~~y~~g------------~g~~~~~~~A~~~~~~a~~~~~  274 (342)
                      .-+.+-.+.            .|.......|.+.+++|++.++
T Consensus       335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP  377 (539)
T PF04184_consen  335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP  377 (539)
T ss_pred             HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence            333332221            2223345567788888887643

The molecular function of this protein is uncertain.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.70  E-value=0.017  Score=46.67  Aligned_cols=79  Identities=20%  Similarity=0.140  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC----------CHHHHHHHHHHHH--hCCCHHHHHHHHHHHHc-CC-c-
Q 019340          122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMD----------KKEAAISLYRQAA--VLGDPAGQFNLGISYLQ-AQ-P-  184 (342)
Q Consensus       122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~----------~~~~A~~~~~~a~--~~~~~~a~~~Lg~~~~~-g~-~-  184 (342)
                      +.|.+.++.....  .+++++++-|..+.+..          -+++|+.-|+.|+  +++..+|+++||.+|.. +. . 
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~   87 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP   87 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence            4455555554443  35666666666555542          2445555555554  34667888888888763 11 1 


Q ss_pred             ------cCHHHHHHHHHHHHHc
Q 019340          185 ------ANAEEAVKLLYQASIA  200 (342)
Q Consensus       185 ------~~~~~A~~~~~~a~~~  200 (342)
                            .-+++|..+|+++.+.
T Consensus        88 d~~~A~~~F~kA~~~FqkAv~~  109 (186)
T PF06552_consen   88 DTAEAEEYFEKATEYFQKAVDE  109 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHhc
Confidence                  2245555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.17  Score=43.50  Aligned_cols=114  Identities=16%  Similarity=0.116  Sum_probs=72.9

Q ss_pred             cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----C----CCHHHHHHHHHHHHcCCccC
Q 019340          118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAV----L----GDPAGQFNLGISYLQAQPAN  186 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~----~~~~a~~~Lg~~~~~g~~~~  186 (342)
                      .+.+.-.+..+.+.++.+   ++.....||++-.+.||.+.|..+|++.-+    +    +......+.+.+|.  ..+|
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l--g~nn  267 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL--GQNN  267 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee--cccc
Confidence            356666777777777654   455556777777777777777777774321    1    33445555666666  6677


Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          187 AEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       187 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      +..|...|.+.+..+  ++.+-++-+.|..+    .++...|++..+.+....
T Consensus       268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllY----lg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  268 FAEAHRFFTEILRMDPRNAVANNNKALCLLY----LGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hHHHHHHHhhccccCCCchhhhchHHHHHHH----HHHHHHHHHHHHHHhccC
Confidence            777777777766554  45566666666665    556777777777766653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.56  E-value=0.0044  Score=35.39  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      .+++.+|.+|...|++++|..+|+++++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5688999999999999999999999988754

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.018  Score=53.40  Aligned_cols=109  Identities=21%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---CC--------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RG--------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--  166 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---~~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--  166 (342)
                      .+++++.-...+..    .||+.+|.+.+...--   .|        .--.+.+||-|++..+.+.-++.+|.+|+..  
T Consensus       239 s~~~l~LKsq~eY~----~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  239 SSMALLLKSQLEYA----HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             CcHHHHHHHHHHHH----hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            55666666665555    4799999998876422   22        1124578999999999999999999999841  


Q ss_pred             ------------------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          167 ------------------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       167 ------------------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                                        ...+..||.|..|.  ..|++..|.++|.+++..  .+|..|..|+.|+.
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~L--h~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL--HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHH--hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                              23578999999999  889999999999999885  68999999999986

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.25  E-value=0.04  Score=46.68  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             cCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hC--------CCHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR----G-----STLAMVDAGLMYWEMDKKEAAISLYRQAA-------VL--------GDPAGQF  173 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-------~~--------~~~~a~~  173 (342)
                      ..+.++|++.|..|+-.    +     -+..++.++.+|...++.+....++++|+       +.        +....+|
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            67888899888888653    1     13456788999988888555555555554       22        2245677


Q ss_pred             HHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          174 NLGISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       174 ~Lg~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      .+|.++.  ..|++++|+.||.+.+...
T Consensus       170 LigeL~r--rlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  170 LIGELNR--RLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHH--HhCCHHHHHHHHHHHHcCC
Confidence            7888877  7788888888888877653

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.023  Score=47.99  Aligned_cols=80  Identities=23%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .+.+..|+..|.+|+..+  .+..+.+-+.+|+..++++....-.++|++.  +...++|.||.+..  ....+.+||..
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l--~s~~~~eaI~~  100 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL--QSKGYDEAIKV  100 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH--hhccccHHHHH
Confidence            588999999999999986  4566779999999999999999999999987  56889999999999  88899999999


Q ss_pred             HHHHHH
Q 019340          194 LYQASI  199 (342)
Q Consensus       194 ~~~a~~  199 (342)
                      ++++..
T Consensus       101 Lqra~s  106 (284)
T KOG4642|consen  101 LQRAYS  106 (284)
T ss_pred             HHHHHH
Confidence            999855

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.16  E-value=0.013  Score=33.42  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL  166 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~  166 (342)
                      .+++.+|.+|...|++++|+.+|+++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45666777777777777777777766643

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.14  E-value=0.13  Score=42.14  Aligned_cols=93  Identities=22%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL-GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGH-VRAQYQLALC  212 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~  212 (342)
                      +.+.++..+.+.+++++|+..++.++.. .|    +-+-.+|+.+..  ..+.+++|+..+....+.+. +.....-|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~--q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL--QQKKADAALKTLDTIKEESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH--HhhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence            3456666677777777777777766644 22    224445666666  66677777766665555442 3334445666


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      +..    .+|-++|...|.+|++.+
T Consensus       169 ll~----kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         169 LLA----KGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHH----cCchHHHHHHHHHHHHcc
Confidence            665    566777777777777664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.47  Score=40.96  Aligned_cols=132  Identities=12%  Similarity=0.083  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----C----CC
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE----G----GY  238 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~----~----~~  238 (342)
                      ..++.+..++.  ..+.+.-.+..+.+.++.+   .+.....||.+-.+    .+|.+-|..+|++.-+    .    +.
T Consensus       178 ~Vmy~~~~~ll--G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ----~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  178 RVMYSMANCLL--GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ----IGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHHHHh--cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhhccchh
Confidence            46777777777  7888999999999988854   56777788988887    6788888888884432    1    23


Q ss_pred             HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHH
Q 019340          239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADH  311 (342)
Q Consensus       239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  311 (342)
                      .....+.+.+|. |   .+|+..|...|.+.+..++  +.+-++-+.+..-.|+..+|++-.+.+++..|..+..
T Consensus       252 ~~V~~n~a~i~l-g---~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  252 IMVLMNSAFLHL-G---QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             HHHHhhhhhhee-c---ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            445666777774 2   4599999999999887754  5666788888888999999999999999887655443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.96  E-value=0.067  Score=45.30  Aligned_cols=65  Identities=12%  Similarity=0.003  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHcCCCC----cccHHHHHHHHHHHHHcC--------CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          241 AMYNTSLCYSFGEGL----PLSHRQARKWMKRAADCG--------HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       241 a~~~lg~~y~~g~g~----~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      .+..++++|. ..|-    ..=..+|+.+|++|.+..        ....++-+|.+....|++++|..||.+.+..+.
T Consensus       120 l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  120 LCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            4555666663 3320    011334455555554432        245678999999999999999999999987643

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.90  E-value=0.87  Score=38.24  Aligned_cols=195  Identities=16%  Similarity=0.039  Sum_probs=109.3

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQA--AVLGDPAGQFNLGISYLQAQPANAEEAVKLLY  195 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~  195 (342)
                      ..+-+.|.-+|++.+             .|-..|-..-|..=|.++  +.+.-|+++..||..+.  ..++++-|.+.|.
T Consensus        59 l~~eeRA~l~fERGv-------------lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~--~a~~fdaa~eaFd  123 (297)
T COG4785          59 LTDEERAQLLFERGV-------------LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFD  123 (297)
T ss_pred             CChHHHHHHHHHhcc-------------hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH--hcccchHHHHHhh
Confidence            356667777777643             333333333444444444  45578999999999999  8999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          196 QASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       196 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      ...+.+  +.-+..|-|..+..|+    .++.|.+-+.+--..+..+-...| ++|..-  .+-|+.+|..-+.+-.+..
T Consensus       124 s~~ELDp~y~Ya~lNRgi~~YY~g----R~~LAq~d~~~fYQ~D~~DPfR~L-WLYl~E--~k~dP~~A~tnL~qR~~~~  196 (297)
T COG4785         124 SVLELDPTYNYAHLNRGIALYYGG----RYKLAQDDLLAFYQDDPNDPFRSL-WLYLNE--QKLDPKQAKTNLKQRAEKS  196 (297)
T ss_pred             hHhccCCcchHHHhccceeeeecC----chHhhHHHHHHHHhcCCCChHHHH-HHHHHH--hhCCHHHHHHHHHHHHHhc
Confidence            988764  6677788887777744    566676666655444322222222 233322  1338888887776665553


Q ss_pred             CHHHH-HHHHHHhhhcCCHHHHHHHHHHHHHcCcHH-H----HHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          274 HGKAQ-LEHGLGLFTEGEMMKAVVYLELATRAGETA-A----DHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       274 ~~~a~-~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~-a----~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      +.+-| .++-..|...=..+.++.-...-.+ ++.. |    .++.=+.-.++..++.++|..+.+--
T Consensus       197 d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa  263 (297)
T COG4785         197 DKEQWGWNIVEFYLGKISEETLMERLKADAT-DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA  263 (297)
T ss_pred             cHhhhhHHHHHHHHhhccHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            32222 2222223222222222222222222 1111 1    11222344556778888888877643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=0.23  Score=40.80  Aligned_cols=93  Identities=16%  Similarity=0.093  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHcCCccCHHHHHHHHHHHHHc-C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCH-HHHHH
Q 019340          171 GQFNLGISYLQAQPANAEEAVKLLYQASIA-G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYV-RAMYN  244 (342)
Q Consensus       171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~-~a~~~  244 (342)
                      +...++..+.  +.+++++|+..++.++.. .    -+-+-.+|+.+...    .+.+++|...+....+.+.. .....
T Consensus        91 aaL~lAk~~v--e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q----~~k~D~AL~~L~t~~~~~w~~~~~el  164 (207)
T COG2976          91 AALELAKAEV--EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ----QKKADAALKTLDTIKEESWAAIVAEL  164 (207)
T ss_pred             HHHHHHHHHH--hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHhccccccHHHHHHHH
Confidence            3444555566  677777777777776643 1    23445567777666    56677777766655544432 23455


Q ss_pred             HHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          245 TSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       245 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      .|.++.. .|   |..+|+..|++|+..+
T Consensus       165 rGDill~-kg---~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         165 RGDILLA-KG---DKQEARAAYEKALESD  189 (207)
T ss_pred             hhhHHHH-cC---chHHHHHHHHHHHHcc
Confidence            6777754 22   7777777777777763

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.59  E-value=0.79  Score=44.83  Aligned_cols=178  Identities=12%  Similarity=0.024  Sum_probs=95.0

Q ss_pred             HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----------CCCHHHHHHHHH
Q 019340           92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----------MDKKEAAISLYR  161 (342)
Q Consensus        92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----------~~~~~~A~~~~~  161 (342)
                      .+-..+.+++..+-.|+..-..    +-+++.|...|-+..+-.-....-.|+.++.+          -|++++|.+.|-
T Consensus       683 ~qfiEdnPHprLWrllAe~Al~----Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl  758 (1189)
T KOG2041|consen  683 IQFIEDNPHPRLWRLLAEYALF----KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL  758 (1189)
T ss_pred             HHHHhcCCchHHHHHHHHHHHH----HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence            3344557788888888877666    45677777777665543222223344444433          378888888876


Q ss_pred             HHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH----HHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-
Q 019340          162 QAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA----SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-  236 (342)
Q Consensus       162 ~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a----~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-  236 (342)
                      .+-..+-+-.+      +.  ..+|.-..++.++..    -+.+-..|+.++|..+..    ...+++|.++|.+.-.. 
T Consensus       759 d~drrDLAiel------r~--klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~----~~~We~A~~yY~~~~~~e  826 (1189)
T KOG2041|consen  759 DADRRDLAIEL------RK--KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE----MMEWEEAAKYYSYCGDTE  826 (1189)
T ss_pred             ccchhhhhHHH------HH--hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccchH
Confidence            55332221111      11  122222222222221    112235677888887776    55678888888776433 


Q ss_pred             CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH-c-CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340          237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD-C-GHGKAQLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~-~~~~a~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                      +..+++|.+-           ++++-    +..+. . .+.+-+-.+|.++.+.|.-++|...|-+
T Consensus       827 ~~~ecly~le-----------~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  827 NQIECLYRLE-----------LFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             hHHHHHHHHH-----------hhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            2333332221           11111    11111 1 3445566778888888888888877654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.44  E-value=0.024  Score=31.80  Aligned_cols=31  Identities=13%  Similarity=0.158  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      ++++++|.++...|++++|+..|++.++.-|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            4678888888888888888888888876543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.38  E-value=0.038  Score=32.91  Aligned_cols=29  Identities=21%  Similarity=0.092  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .++.+||.+|...|++++|..+++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            56889999999999999999999999864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.32  E-value=0.27  Score=43.62  Aligned_cols=125  Identities=12%  Similarity=-0.080  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSL  247 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~  247 (342)
                      |..+.....  ..+..+.|...|.++.+.+  ..+.+...|.+-..   +.+|.+.|...|+++++.  .+...+.....
T Consensus         4 ~i~~m~~~~--r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~---~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    4 WIQYMRFMR--RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY---CNKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH---TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHH--HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            333334444  3445677777777776543  34556666666322   134555677777777664  34444443333


Q ss_pred             HHHcCCCCcccHHHHHHHHHHHHHc-CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          248 CYSFGEGLPLSHRQARKWMKRAADC-GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       248 ~y~~g~g~~~~~~~A~~~~~~a~~~-~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      .+.. .+   |.+.|...|++++.. ...    ..|......-...|+.+.....++++.+.-
T Consensus        79 ~l~~-~~---d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   79 FLIK-LN---DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHH-TT----HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHH-hC---cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            3322 22   667777777777654 221    233333333444566776666666666553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.31  E-value=0.025  Score=31.77  Aligned_cols=27  Identities=15%  Similarity=0.348  Sum_probs=16.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      +++.+|.+|...|++++|+..|++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            556666666666666666666666554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.04  E-value=1.8  Score=40.88  Aligned_cols=178  Identities=17%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      +|+++-++.-++|++.+  .++++.-|+.-  ......+|..+|+++++.+...    ++........+..-+.  ...+
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e~--~~~R  253 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWEA--WHRR  253 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhhh--hhcc
Confidence            56777777777777653  45565554422  1345677777777776542211    1111000000000000  0000


Q ss_pred             HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc
Q 019340          197 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       197 a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      - ..-...+...||.|...    .+..++|++.|+..++..    .....++|-.++..    .+.+.++...+.+--+.
T Consensus       254 d-t~~~~y~KrRLAmCark----lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  254 D-TNVLVYAKRRLAMCARK----LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAKYDDI  324 (539)
T ss_pred             c-cchhhhhHHHHHHHHHH----hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHHhccc
Confidence            0 00024556779999886    678999999999988642    44578888888875    44888888888876443


Q ss_pred             ---CCHHHHHHHHHHhhh-cCC---------------HHHHHHHHHHHHHcCcHHHHHHH
Q 019340          273 ---GHGKAQLEHGLGLFT-EGE---------------MMKAVVYLELATRAGETAADHVK  313 (342)
Q Consensus       273 ---~~~~a~~~Lg~~~~~-~~~---------------~~~A~~~~~~a~~~~~~~a~~~~  313 (342)
                         ..+..+|.-+.+-.+ .++               ...|++..++|.+.++--..+++
T Consensus       325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence               335555554443322 111               24578889999998765554444

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.01  E-value=0.59  Score=41.44  Aligned_cols=90  Identities=11%  Similarity=-0.000  Sum_probs=37.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGR  217 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~  217 (342)
                      .+.+...+.+..+.|...|.+|.+.+  ....+...|.+-+. ..+|.+.|...|+++++.  .+...+.....++..  
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~--   82 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK--   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--
Confidence            33344444444555555555555332  23333333333220 233444455555555442  333444333333333  


Q ss_pred             CCCCCHHHHHHHHHHHHHC
Q 019340          218 GVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~  236 (342)
                        .+|.+.+...|++++..
T Consensus        83 --~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   83 --LNDINNARALFERAISS   99 (280)
T ss_dssp             --TT-HHHHHHHHHHHCCT
T ss_pred             --hCcHHHHHHHHHHHHHh
Confidence              34555555555555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.72  E-value=0.073  Score=31.60  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      .++.+||.+|...|++++|+.+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566777777777777777777777653

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.67  E-value=0.098  Score=46.63  Aligned_cols=91  Identities=14%  Similarity=0.035  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 019340          105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYL  180 (342)
Q Consensus       105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~  180 (342)
                      -.-|.-|..    .+.+++|+++|.+++...  ++..+.+.+..|+..+.+..|..=+..|+.++  ...|+..-|.+-.
T Consensus       101 KE~GN~yFK----QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen  101 KERGNTYFK----QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             HHhhhhhhh----ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            345888877    589999999999998874  77788899999999999999999888888774  4677777787777


Q ss_pred             cCCccCHHHHHHHHHHHHHcC
Q 019340          181 QAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       181 ~g~~~~~~~A~~~~~~a~~~~  201 (342)
                        ..|+..+|.+-++.++...
T Consensus       177 --~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  177 --SLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             --HHhhHHHHHHhHHHHHhhC
Confidence              7889999999999987754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.64  E-value=4.6  Score=40.77  Aligned_cols=179  Identities=18%  Similarity=0.105  Sum_probs=109.3

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .+++++|+.-..+....  +-..+..--|..+.+.|+.++|..+++.....  .|...+-.|-.+|.  +.+..++|+.+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~--d~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR--DLGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH--HHhhhhHHHHH
Confidence            36888999888888875  34455666788889999999999777765433  56777788889999  99999999999


Q ss_pred             HHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcc-----cHHHHHHHH
Q 019340          194 LYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG-EGLPL-----SHRQARKWM  266 (342)
Q Consensus       194 ~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g-~g~~~-----~~~~A~~~~  266 (342)
                      |++++... .-+-.+.+=.+|..-....+.-+-|++.|+-.-  ..+.-.+..-.++..+ .+.+.     -...|.+..
T Consensus       100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen  100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            99999863 345555555566541111223345556665221  1222222222233332 11111     123444555


Q ss_pred             HHHHHcC-CHH----HHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          267 KRAADCG-HGK----AQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       267 ~~a~~~~-~~~----a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                      ++.++.+ ...    ....+ .++...+.+++|...+..-
T Consensus       178 ~~~l~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~  216 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEIILYL-LILELQGKYQEALEFLAIT  216 (932)
T ss_pred             HHHhccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHH
Confidence            5555543 322    22222 3356688999999999543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.60  E-value=1  Score=35.38  Aligned_cols=59  Identities=19%  Similarity=0.091  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      .+...++..+...|++++|+.++++++..  -+..++..|-.+|.  ..|+...|+..|++..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~--~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA--AQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH--HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHH
Confidence            45566777777778888888888887644  55667777777777  7778888888887753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.95  Score=42.42  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----
Q 019340          171 GQFNLGISYLQAQPANAEEAVKLLYQASIAG-----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----  237 (342)
Q Consensus       171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~----  237 (342)
                      ++..++..+....+.+..+++++++......     .+.....||.+++.   ..+|.+.|...+++|...    +    
T Consensus         9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~---yT~N~elAksHLekA~~i~~~ip~fyd   85 (629)
T KOG2300|consen    9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLR---YTKNVELAKSHLEKAWLISKSIPSFYD   85 (629)
T ss_pred             HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHcccccHHh
Confidence            3444444454344557788888887766543     23456677766542   267888888888888653    1    


Q ss_pred             -CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCH----HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          238 -YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHG----KAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       238 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                       -.++.-.|+.+|..-   .+....+...+++|++.  +.+    .-.+.|+.++.-..|+..|.+.+....+..++
T Consensus        86 vKf~a~SlLa~lh~~~---~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~  159 (629)
T KOG2300|consen   86 VKFQAASLLAHLHHQL---AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADH  159 (629)
T ss_pred             hhhHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccch
Confidence             134566678887542   23777888889999885  222    23478899888899999999997766665433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.49  E-value=1.2  Score=40.56  Aligned_cols=168  Identities=15%  Similarity=0.089  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CC--HHHH
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GD--PAGQ  172 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~--~~a~  172 (342)
                      +..++.+...    .|.++.|...+.++...+      .+...+.-+.+.+..|+..+|+..++..+..   ..  +...
T Consensus       149 ~l~~a~~aRk----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  149 WLKFAKLARK----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHH----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            3344444444    356666666666666544      5566666666666667777777666665541   11  0011


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG--RGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLC  248 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g--~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~  248 (342)
                      ..+...............+.....   ...+.++..+|.....-  .-...+.+++...|++|+...  ...+++.+|..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESK---ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHhhccccccccccccchhhhhH---HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            111100000000000000000000   01235566666665542  011467888888888888763  45677777777


Q ss_pred             HHcCCC-------------CcccHHHHHHHHHHHHHcCCHHHH
Q 019340          249 YSFGEG-------------LPLSHRQARKWMKRAADCGHGKAQ  278 (342)
Q Consensus       249 y~~g~g-------------~~~~~~~A~~~~~~a~~~~~~~a~  278 (342)
                      +..-..             ...-...|+..|-+++..|+....
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~  344 (352)
T PF02259_consen  302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR  344 (352)
T ss_pred             HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence            643210             111235688999999888765433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=2.5  Score=37.20  Aligned_cols=112  Identities=16%  Similarity=0.034  Sum_probs=70.6

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-hCCCHHHHHHHH---HHHHcCCccCHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA-VLGDPAGQFNLG---ISYLQAQPANAEEAV  191 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg---~~~~~g~~~~~~~A~  191 (342)
                      .+++.+|...|..+...  .+.++...++.+|...|+.+.|...+...- +..+..++-..+   .+-.-...++...  
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~--  224 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD--  224 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH--
Confidence            46888888888888775  467788888888888888888888877643 223333332112   1111122333322  


Q ss_pred             HHHHH-HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          192 KLLYQ-ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       192 ~~~~~-a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                       .-++ +.++++.++-+.|+..|..    .++.+.|.+.+-..+..
T Consensus       225 -l~~~~aadPdd~~aa~~lA~~~~~----~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         225 -LQRRLAADPDDVEAALALADQLHL----VGRNEAALEHLLALLRR  265 (304)
T ss_pred             -HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence             2222 3446788888888888876    66788888777766654

>smart00028 TPR Tetratricopeptide repeats

Probab=94.46  E-value=0.054  Score=29.35  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      .+++.+|.++...+++++|..+|++++...+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4567888889999999999999988887643

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.40  E-value=1  Score=34.78  Aligned_cols=93  Identities=12%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             HHHHHHHHC-CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          228 RWYLRAAEG-GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       228 ~~~~~A~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      ++..+.+.. -.....+++++++.... -..|..+.+.+++..+...+    -+..|.|+..++..++|++++.|....+
T Consensus        20 ~~~rq~a~~~~s~~s~f~lAwaLV~S~-~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll   98 (149)
T KOG3364|consen   20 EILRQAARSDVSKQSQFNLAWALVRSR-DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL   98 (149)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHccc-chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            334444332 34567889999985543 36789999999999987433    4567899999999999999999999998


Q ss_pred             Hc--CcHHHHHHHHHHHhhcC
Q 019340          303 RA--GETAADHVKNVILQQLS  321 (342)
Q Consensus       303 ~~--~~~~a~~~~~~~~~~~~  321 (342)
                      +.  ++..+..+...+...++
T Consensus        99 ~~e~~n~Qa~~Lk~~ied~it  119 (149)
T KOG3364|consen   99 ETEPNNRQALELKETIEDKIT  119 (149)
T ss_pred             hhCCCcHHHHHHHHHHHHHHh
Confidence            87  46777777776665553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.28  E-value=3.6  Score=36.38  Aligned_cols=116  Identities=19%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHHHhC---CCH-------HHHHHHHHHHhcCC-CHHHHHHHHHHHHhC----C-----C-------HH
Q 019340          118 RKNLDKALDSFLKGAAR---GST-------LAMVDAGLMYWEMD-KKEAAISLYRQAAVL----G-----D-------PA  170 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~---~~~-------~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~----~-----~-------~~  170 (342)
                      .+|++.|..+|.|+-..   .++       ..+++.|.-....+ +++.|+.|+++|.+.    +     .       ..
T Consensus         6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            36888888888887553   233       34577777777778 999999999998643    1     1       13


Q ss_pred             HHHHHHHHHHc-CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          171 GQFNLGISYLQ-AQPANAEEAVKLLYQASIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       171 a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+..|+.+|.. +.....++|..+.+.+-.. ++....+.|..-...+   ..+.+.+.+.+.+.+..
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHh
Confidence            56667788874 2334555666666555332 3433333333333332   45778888888887765

It is also involved in sporulation [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.24  E-value=0.41  Score=42.85  Aligned_cols=55  Identities=18%  Similarity=0.128  Sum_probs=27.4

Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      -|.-|+  ..|.|++||.||.+++..  -++..+.|-+..|+.    .+.+..|..-++.|+.
T Consensus       103 ~GN~yF--KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE~DC~~Aia  159 (536)
T KOG4648|consen  103 RGNTYF--KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAEEDCEAAIA  159 (536)
T ss_pred             hhhhhh--hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHHHhHHHHHH
Confidence            345555  555666666666665443  244445555555554    3344444444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.17  E-value=1.5  Score=34.31  Aligned_cols=57  Identities=28%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          171 GQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       171 a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +...++.++.  ..+++++|+.++++++..  -+..++..+-.+|..    .++...|+..|++.
T Consensus        64 ~~~~l~~~~~--~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   64 ALERLAEALL--EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHH--HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHH--hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHH
Confidence            3344444444  455666666666665543  244555555555554    44555666555554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=0.21  Score=42.35  Aligned_cols=88  Identities=20%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG  218 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~  218 (342)
                      -|..++....+..|+..|-+|+-.  ..+.-+.|-+.+|+  ..++.+....-.+++++.  +...+++.||.+...   
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl--k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~---   90 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL--KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ---   90 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH--HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh---
Confidence            355666778899999999999866  44566778899999  688889999999999886  467889999999987   


Q ss_pred             CCCCHHHHHHHHHHHHHC
Q 019340          219 VDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~  236 (342)
                       .+.+++|+..+.+|.+.
T Consensus        91 -s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   91 -SKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             -hccccHHHHHHHHHHHH
Confidence             66889999999999653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.93  E-value=1.4  Score=40.11  Aligned_cols=168  Identities=13%  Similarity=-0.063  Sum_probs=104.9

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---C--HH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---H--VR  204 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~--~~  204 (342)
                      ....+..++.+....|.++.|...+.++...+      .+...+.-+.+..  ..|+..+|+..++..+...   .  +.
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw--~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW--AQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            45677889999999999999999999998765      7888888888888  7889999999998887621   1  11


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHHcC--CHHHHHH
Q 019340          205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFG--EGLPLSHRQARKWMKRAADCG--HGKAQLE  280 (342)
Q Consensus       205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g--~g~~~~~~~A~~~~~~a~~~~--~~~a~~~  280 (342)
                      ....+............  ..........   ..+.++..+|.+....  .-...+.+++...|+.++...  ...+++.
T Consensus       223 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~  297 (352)
T PF02259_consen  223 SNAELKSGLLESLEVIS--STNLDKESKE---LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS  297 (352)
T ss_pred             cHHHHhhcccccccccc--ccchhhhhHH---HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence            11112111100000000  0000000000   0134555555555332  001348999999999999873  4667788


Q ss_pred             HHHHhhhcC-----------------CHHHHHHHHHHHHHcCcHHHH
Q 019340          281 HGLGLFTEG-----------------EMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       281 Lg~~~~~~~-----------------~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      +|..+...=                 -...|+..|-+++..|+....
T Consensus       298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~  344 (352)
T PF02259_consen  298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVR  344 (352)
T ss_pred             HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchH
Confidence            887665521                 124599999999999887443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.75  E-value=2.2  Score=35.48  Aligned_cols=68  Identities=24%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHcCCccCHHHHH
Q 019340          121 LDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL------GDPAGQFNLGISYLQAQPANAEEAV  191 (342)
Q Consensus       121 ~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~g~~~~~~~A~  191 (342)
                      .+.|..-|.++-..   .+++.++.||..|. ..|.++++.+|.++++.      -|++.+..|+.+|.  ..+++++|.
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~--~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ--KLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--Hhcchhhhh
Confidence            34455555444332   35555555555553 45555555555555543      13455555555555  445555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.72  E-value=1.2  Score=36.93  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             cCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHH
Q 019340          118 RKNLDKALDSFLKGAARGS-------TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAE  188 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~  188 (342)
                      .+++.+|..-|..|++.-.       .-.+.+-|-++...+..+.||.-+.+|++++.  ..|+..-+.+|.  ....++
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye--k~ek~e  185 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE--KMEKYE  185 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH--hhhhHH
Confidence            5899999999999998631       12344777788888999999999999999854  678888888888  778999


Q ss_pred             HHHHHHHHHHHcCCH
Q 019340          189 EAVKLLYQASIAGHV  203 (342)
Q Consensus       189 ~A~~~~~~a~~~~~~  203 (342)
                      +|+.-|.+.++.+..
T Consensus       186 ealeDyKki~E~dPs  200 (271)
T KOG4234|consen  186 EALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHHHHhCcc
Confidence            999999999887543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.48  E-value=1.2  Score=36.86  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=73.6

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE  149 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~---a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~  149 (342)
                      +|..|++.+|...+...+...+....   +..+.+-|.+...    .+..+.|+.-..+|++++  +..++...+.+|..
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            78999999999888888887766432   3344455555555    468899999999999997  56788888999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCHH
Q 019340          150 MDKKEAAISLYRQAAVLGDPA  170 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~~~~~  170 (342)
                      ...+++|++=|++..+.+...
T Consensus       181 ~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcch
Confidence            999999999999999875543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.36  E-value=0.4  Score=30.61  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHHHHHHHhhc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHVKNVILQQL  320 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~~  320 (342)
                      +.+|.|+..++..|++++|..+.+.+++..  +..+..+...+...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            457889999999999999999999999885  556666665555433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.11  E-value=0.77  Score=38.11  Aligned_cols=63  Identities=11%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             HHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---C---CHHHHHHHHHHHhcCCCHHHHHHH
Q 019340           92 NDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---G---STLAMVDAGLMYWEMDKKEAAISL  159 (342)
Q Consensus        92 ~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~---~~~a~~~lg~~~~~~~~~~~A~~~  159 (342)
                      ++..+...+++.++.||-.|..     .|.++++.++.+++++   +   +++....|+.+|...+++++|--|
T Consensus       132 ~E~~~~l~t~elq~aLAtyY~k-----rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  132 LEGTPELETAELQYALATYYTK-----RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW  200 (203)
T ss_pred             HcCCCCCCCHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence            4445667789999999999987     7999999999999986   2   788999999999999999998644

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=8.5  Score=36.79  Aligned_cols=202  Identities=15%  Similarity=0.052  Sum_probs=123.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHH
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQ  172 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~  172 (342)
                      ++.+.+.+.-+.++..    .++.+.|+..+..+++..    +.--.+.+|.++....++..|...+....+.. ...|.
T Consensus       264 p~ga~wll~~ar~l~~----~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~  339 (546)
T KOG3783|consen  264 PKGALWLLMEARILSI----KGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF  339 (546)
T ss_pred             CCCccHHHHHHHHHHH----cccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence            4466666666766665    456889999999988821    23345678888888889999999988888763 33333


Q ss_pred             --HHHHHHHHc------CCccCHHHHHHHHHHHHH------------------------cC-----CHH--HHHHHHHHH
Q 019340          173 --FNLGISYLQ------AQPANAEEAVKLLYQASI------------------------AG-----HVR--AQYQLALCL  213 (342)
Q Consensus       173 --~~Lg~~~~~------g~~~~~~~A~~~~~~a~~------------------------~~-----~~~--a~~~lg~~~  213 (342)
                        |..|.|++.      +..++-++|-.+++...+                        .+     .+.  -++.+..++
T Consensus       340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~W  419 (546)
T KOG3783|consen  340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFW  419 (546)
T ss_pred             HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHH
Confidence              344566653      223455555555444311                        01     111  134444444


Q ss_pred             hcCCCC-CCCHHHHHHHHH-HHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---------CCHHHHHH
Q 019340          214 HRGRGV-DFNLQEAARWYL-RAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---------GHGKAQLE  280 (342)
Q Consensus       214 ~~g~~~-~~~~~~A~~~~~-~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~  280 (342)
                      -.=... .++..+...-+. ..++.-|..  -+..+|.+. +-.|   +...|..+|..+++.         -.|.|+|.
T Consensus       420 ngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~l-R~Lg---~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YE  495 (546)
T KOG3783|consen  420 NGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVIL-RNLG---DSEVAPKCFKIQVEKESKRTEDLWAVPFALYE  495 (546)
T ss_pred             hhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence            211111 222222222221 112111222  244567777 4455   999999999999853         23789999


Q ss_pred             HHHHhhhcCC-HHHHHHHHHHHHHcCcH
Q 019340          281 HGLGLFTEGE-MMKAVVYLELATRAGET  307 (342)
Q Consensus       281 Lg~~~~~~~~-~~~A~~~~~~a~~~~~~  307 (342)
                      ||.+|.+++. ..++..|+.+|-+...+
T Consensus       496 lA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  496 LALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            9999999998 99999999999987633

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=2  Score=36.75  Aligned_cols=66  Identities=12%  Similarity=0.000  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      -+.|+..|+..    ..++-++++.-...+..  ++..|++.-|.+....=|..+|..-|.+++++++.-+-
T Consensus       232 LllNy~QC~L~----~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  232 LLLNYCQCLLK----KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHhHHHHHhh----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            34455555543    22555555555555544  45666666666666666666666666666666654443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=4.7  Score=38.02  Aligned_cols=130  Identities=13%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             CChhHHhhHHHH---HHHHHHhCc-----CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHH
Q 019340           77 TLPQLRAASLVC---KSWNDALRP-----LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDA  143 (342)
Q Consensus        77 ~~~~~~~a~~~~---~~~~~~~~~-----~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~l  143 (342)
                      -.|+..+|....   .+|+...+.     .-.+..++.+|.....    .+-++.|...|..|...-     .+....++
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~~a~k~t~~~dl~a~~nlnl  410 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFIEATKLTESIDLQAFCNLNL  410 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence            345555554433   345544443     1134566777765555    467778888888777753     22344677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC--CCH-------HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVL--GDP-------AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALC  212 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~--~~~-------~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  212 (342)
                      +..|.+.++-+.--+.++..-..  ...       ..+|--|...+  ..+++.+|...+++.++..+++-.+.|-.|
T Consensus       411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf--~qn~lnEaK~~l~e~Lkmanaed~~rL~a~  486 (629)
T KOG2300|consen  411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF--KQNDLNEAKRFLRETLKMANAEDLNRLTAC  486 (629)
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence            77887766655544443332211  111       12222333333  466777777777777776555555444333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.74  E-value=2  Score=36.81  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG  216 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g  216 (342)
                      ..++..-|+-++..|++++|...|+.|+-        .|-.+...-.+++++    |.+ . +.-....+.|..+|+.. 
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~--------~l~~L~lkEkP~e~e----W~e-L-dk~~tpLllNy~QC~L~-  242 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAII--------CLRNLQLKEKPGEPE----WLE-L-DKMITPLLLNYCQCLLK-  242 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHH--------HHHHHHhccCCCChH----HHH-H-HHhhhHHHHhHHHHHhh-
Confidence            34666778888888999999998887752        222222211223321    111 1 11123456677777765 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG  275 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  275 (342)
                         .+++-++++.....+..  ++..|++..|.....-.    +..+|..-|.++++.++.
T Consensus       243 ---~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~W----n~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  243 ---KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVW----NEAEAKADLQKVLELDPS  296 (329)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc----CHHHHHHHHHHHHhcChh
Confidence               56777777777777765  57778888777775433    788888888888877654

>smart00028 TPR Tetratricopeptide repeats

Probab=92.65  E-value=0.16  Score=27.25  Aligned_cols=27  Identities=22%  Similarity=0.429  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      +++.+|.++...+++++|+.+|+++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555556555666666666555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.64  E-value=6.8  Score=34.59  Aligned_cols=218  Identities=15%  Similarity=0.098  Sum_probs=116.0

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCH-------HHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHhC----C-----C---
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREA-------MVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAAR----G-----S---  136 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a-------~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~A~~~----~-----~---  136 (342)
                      .+|++..|...+.+...... ..++       ..+|+.|.-...    ++ +++.|+.|+++|.+.    +     .   
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~   79 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG   79 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence            34566666554444433331 1122       456666666555    57 999999999999775    2     1   


Q ss_pred             ----HHHHHHHHHHHhcCCCHH---HHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCC-HHHHH
Q 019340          137 ----TLAMVDAGLMYWEMDKKE---AAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGH-VRAQY  207 (342)
Q Consensus       137 ----~~a~~~lg~~~~~~~~~~---~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~  207 (342)
                          ...+..|+.+|...+..+   +|..+.+.+-.. ++....+.|..-...+ .++.+.+.+.+.+.+..-+ ++.-+
T Consensus        80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~  158 (278)
T PF08631_consen   80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchH
Confidence                134567888888877654   444444444322 5555555555444433 6778888888888776532 43333


Q ss_pred             HHHH-HHhcCCCCCCCHHHHHHHHHHHHHC--C-CHHHHHH---HHHHHHcCC-C-Ccc--cHHHHHHHHHHHHHc----
Q 019340          208 QLAL-CLHRGRGVDFNLQEAARWYLRAAEG--G-YVRAMYN---TSLCYSFGE-G-LPL--SHRQARKWMKRAADC----  272 (342)
Q Consensus       208 ~lg~-~~~~g~~~~~~~~~A~~~~~~A~~~--~-~~~a~~~---lg~~y~~g~-g-~~~--~~~~A~~~~~~a~~~----  272 (342)
                      .... ++..-.  ..+...+...+.+.+..  . ..+.+..   +-.++..+. + ...  ..+....++......    
T Consensus       159 ~~~l~~i~~l~--~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~  236 (278)
T PF08631_consen  159 DSILHHIKQLA--EKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ  236 (278)
T ss_pred             HHHHHHHHHHH--hhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC
Confidence            2211 111100  23445566666555432  1 1110111   222222221 1 011  133333444433221    


Q ss_pred             CCHH-------HHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          273 GHGK-------AQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       273 ~~~~-------a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      -..+       -..+-|.-.+..++|.+|..||+.++
T Consensus       237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            1122       23677888889999999999999886

It is also involved in sporulation [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.30  E-value=0.17  Score=26.94  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=14.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYR  161 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~  161 (342)
                      +.+.+|.++...||+++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.26  E-value=1.8  Score=35.43  Aligned_cols=58  Identities=17%  Similarity=0.107  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLG-D----PAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      .++..+|..|...||.++|++.|.++.+.. .    .+.++++-.+..  ..+|......+..++
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i--~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI--FFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHH
Confidence            445566666666666666666666655441 1    233333333333  345555555555554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.91  E-value=0.94  Score=27.62  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          278 QLEHGLGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                      .++|+.+|...|+.+.|...++..+..++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~   32 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA   32 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence            3678999999999999999999888766543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.58  E-value=0.24  Score=26.32  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      .+.+.||.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456788899999999999988875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.50  E-value=2.6  Score=31.85  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHhC-------------C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------hCCCHH------H
Q 019340          119 KNLDKALDSFLKGAAR-------------G-STLAMVDAGLMYWEMDKKEAAISLYRQAA-------VLGDPA------G  171 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~-------------~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-------~~~~~~------a  171 (342)
                      +-+++|..-+++|.+.             | ++-.+..|+..+...|++++++..-.+++       ++...+      +
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            5778888888888763             1 23345567777778888887776666655       333333      3


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      .++-+.++.  ..|..++|+..|+++.+
T Consensus       103 Vfsra~Al~--~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  103 VFSRAVALE--GLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHH--HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hcCChHHHHHHHHHHHH
Confidence            344444444  56777888888877754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.32  E-value=0.5  Score=28.83  Aligned_cols=31  Identities=32%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhCCCHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVLGDPA  170 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~  170 (342)
                      .++|+..|...||.+.|.+.++..+..++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~   32 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEGDEA   32 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcCCHH
Confidence            4678889999999999999999888776654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.25  E-value=0.96  Score=33.65  Aligned_cols=94  Identities=10%  Similarity=0.024  Sum_probs=55.1

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCH-HHHHHHHHHHHcCCCCcCCHHH-------HHHHHHHHHhCC--CHHHHH
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREA-MVLLRWGKRFKHGRGVRKNLDK-------ALDSFLKGAARG--STLAMV  141 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a-~a~~~lg~~y~~g~g~~~~~~~-------A~~~~~~A~~~~--~~~a~~  141 (342)
                      +...+..||+.+|..+....+.......++ ..+..-|.++..--.+..|.+-       +++.|.++..+.  .+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            455678889999988888887776655443 4555556666442222223322       555555555542  445556


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      .||.-+.....|++++.-.++++.
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhc
Confidence            666665555556666666555553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.08  E-value=2.7  Score=34.41  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQ  172 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~  172 (342)
                      .++..+|..|..    .||.+.|++.|.++-+..     -.+.++++-++....+|+.....++.++-..    ++.+..
T Consensus        37 ~~~~~l~~~~~~----~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   37 MALEDLADHYCK----IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHH----hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            688899999999    589999999999987742     3466778888888889999999999987533    333322


Q ss_pred             ----HHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          173 ----FNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       173 ----~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                          ..-|..++  ..+++.+|...|..+.
T Consensus       113 nrlk~~~gL~~l--~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  113 NRLKVYEGLANL--AQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHH--HhchHHHHHHHHHccC
Confidence                22344444  4667777777776653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.94  E-value=11  Score=33.37  Aligned_cols=57  Identities=18%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      +.-+.-+.-....+++.+|...|..+...  .+.++...|+.+|.  ..|+.+.|...+..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l--~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL--AAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH--HcCChHHHHHHHHh
Confidence            33444555666778999999999998765  66788888999998  88888888777765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.81  E-value=0.89  Score=40.15  Aligned_cols=69  Identities=20%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--hCCCHHHHHHHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA--VLGDPAGQFNLG  176 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--~~~~~~a~~~Lg  176 (342)
                      ++..-|.++..     |+.++|..+|+-|+.+  .+++++...|.+....+++-+|-.+|-+|+  ..++.+|+.+-.
T Consensus       119 Al~~A~~~~~~-----Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  119 ALKAAGRSRKD-----GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHhc-----cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            44455677776     5899999999999887  599999999999999999999999999987  558888887755

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.55  E-value=5.5  Score=30.15  Aligned_cols=93  Identities=15%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCC----------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH------
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLR----------EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGA------  132 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~------  132 (342)
                      +..+...+..+-+.+|...|+.....+...+          ++..+-.|.-.+..    .+++++++..-.+|+      
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhc
Confidence            4445556777888999999998888876654          22344445555544    467777555444444      


Q ss_pred             -hCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          133 -ARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       133 -~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                       +++      ++.+.++-+..+...|+.++|++.|+.+.+
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             443      345667778888888999999999999875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=90.53  E-value=13  Score=35.70  Aligned_cols=112  Identities=15%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCcccHH
Q 019340          187 AEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG---GYVRAMYNTSLCYSFGEGLPLSHR  260 (342)
Q Consensus       187 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~y~~g~g~~~~~~  260 (342)
                      ..++..+|+++++.-   +...++.++..-. +.-.....++--..+.++...   +...++..+-..-.+..    -.+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE-~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e----Glk  383 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEE-SRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE----GLK  383 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh----hHH
Confidence            456667777766542   2222223322221 110011344445555555443   22223333333322322    345


Q ss_pred             HHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          261 QARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       261 ~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .|...|.+|-+...    .-....+-. |...++.+-|.+.|+.++..
T Consensus       384 aaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkk  430 (656)
T KOG1914|consen  384 AARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKK  430 (656)
T ss_pred             HHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHh
Confidence            56666666655321    111111111 34456666666666666654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.09  E-value=14  Score=33.36  Aligned_cols=156  Identities=13%  Similarity=-0.016  Sum_probs=105.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC---CH---HHHHHHHHHHhc
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG---HV---RAQYQLALCLHR  215 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~---~~---~a~~~lg~~~~~  215 (342)
                      +-+.+..|+..+|...+.+.++.  .+--++-.--.+++  -.|+...-...++|.+..-   .|   -..-.++.++.+
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f--y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF--YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH--hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34555678888888888888876  44445555556666  4667777788888888762   22   122233444444


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---CCHH---HHHHHHHHhhh
Q 019340          216 GRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---GHGK---AQLEHGLGLFT  287 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~---a~~~Lg~~~~~  287 (342)
                          .+-+.+|.+.-++|++.+  +..+...++.++..    ....+++.+++.+.-+.   +.-.   -+...+..+..
T Consensus       188 ----~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE  259 (491)
T KOG2610|consen  188 ----CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE  259 (491)
T ss_pred             ----hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence                567999999999999886  55566667777743    33899999999887553   2221   23456677777


Q ss_pred             cCCHHHHHHHHHHHH--HcCcHHH
Q 019340          288 EGEMMKAVVYLELAT--RAGETAA  309 (342)
Q Consensus       288 ~~~~~~A~~~~~~a~--~~~~~~a  309 (342)
                      .+++++|...|.+-+  ++.-.++
T Consensus       260 ~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  260 GAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             ccchhHHHHHHHHHHHHHhhccch
Confidence            899999999998765  4555555

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.91  E-value=16  Score=33.72  Aligned_cols=208  Identities=15%  Similarity=0.042  Sum_probs=120.2

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCH-----HHHHHHHHHHHcCCccCH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDP-----AGQFNLGISYLQAQPANA  187 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~-----~a~~~Lg~~~~~g~~~~~  187 (342)
                      .|+.+.|..|-+.|...-  -+-+...+=......||++.|+++.......   +..     .+...-+.... -...|+
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp  245 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADP  245 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCCh
Confidence            467777888888877753  2222222222334568888888887664322   111     11111111111 124467


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340          188 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCYSFGEGLPLSHRQARK  264 (342)
Q Consensus       188 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y~~g~g~~~~~~~A~~  264 (342)
                      ..|...-..+.+.  +...+-..-+..++.    .+|..|+-..++.+-+.. +++    ++.+|.+-.    .-+-++.
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar----~gdta~d  313 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGSKILETAWKAEPHPD----IALLYVRAR----SGDTALD  313 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhhhHHHHHHhcCCChH----HHHHHHHhc----CCCcHHH
Confidence            7777777766654  455566666666666    667888888888877653 332    334443321    1122333


Q ss_pred             HHHHH-----HHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          265 WMKRA-----ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       265 ~~~~a-----~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      -++++     ++.++.++.+.++..-+..|++..|..--+.+.+..+.+..+.+-.=...-.-++-.+++....+-.+-
T Consensus       314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            33333     234778888888888888999999999999999888877766543333334445555555544443333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.82  E-value=0.97  Score=43.35  Aligned_cols=81  Identities=20%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVK  192 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~  192 (342)
                      .|+...|+..+..|....   ......+|+.+...-+-.-.|-.++.+++..  ..|-.++-+|.+|.  ...|..+|++
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l--~l~~i~~a~~  697 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL--ALKNISGALE  697 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH--HHhhhHHHHH
Confidence            456666666666665542   2223455666655555566666666665554  33445555666666  5666666666


Q ss_pred             HHHHHHHc
Q 019340          193 LLYQASIA  200 (342)
Q Consensus       193 ~~~~a~~~  200 (342)
                      .|+.|++.
T Consensus       698 ~~~~a~~~  705 (886)
T KOG4507|consen  698 AFRQALKL  705 (886)
T ss_pred             HHHHHHhc
Confidence            66666654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.66  E-value=0.96  Score=26.23  Aligned_cols=31  Identities=6%  Similarity=0.196  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhhcCCHHHHHHH--HHHHHHcCc
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVY--LELATRAGE  306 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~--~~~a~~~~~  306 (342)
                      +.++.+|..+..+|++++|+++  |+-++.+++
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            4577889999999999999999  557766543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.52  E-value=4.9  Score=28.91  Aligned_cols=47  Identities=23%  Similarity=0.046  Sum_probs=35.3

Q ss_pred             cHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          258 SHRQARKWMKRAADC----G-------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~----~-------~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      |+..|++.+.+..+.    +       ...+..+++.++...|++++|+..++.|+++
T Consensus        13 dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   13 DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            777776666665442    1       1356688999999999999999999999865

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.35  E-value=12  Score=33.79  Aligned_cols=151  Identities=12%  Similarity=0.015  Sum_probs=89.2

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCC-HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CC---HHHHHHH
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLRE-AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GS---TLAMVDA  143 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~---~~a~~~l  143 (342)
                      +++.++..|++.+|.   ..|-+...+++. -.+.-.--..+..    .|+.......+++.+..   +-   ....-.+
T Consensus       109 ~aai~~~~g~~h~a~---~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy  181 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAA---IEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY  181 (491)
T ss_pred             hHHHhhccccccHHH---HHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence            344456777777776   345454444432 2222222222222    24555666677777665   22   1222356


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCHHHHH--HHHHHHHcCCccCHHHHHHHHHHHHHc---CCH---HHHHHHHHHHhc
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVLGDPAGQF--NLGISYLQAQPANAEEAVKLLYQASIA---GHV---RAQYQLALCLHR  215 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~~~~~a~~--~Lg~~~~~g~~~~~~~A~~~~~~a~~~---~~~---~a~~~lg~~~~~  215 (342)
                      +..+.+.|=+++|.+.-+++++.+..+++.  .++.++.  ..+++.++.++..+.-+.   +..   .-+...+.++.+
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle--m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE  259 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE--MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE  259 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH--hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence            667777888999999989988775544444  4444444  677888888888775442   222   234456777776


Q ss_pred             CCCCCCCHHHHHHHHHHHH
Q 019340          216 GRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~  234 (342)
                      |    ..+++|++.|.+-+
T Consensus       260 ~----aeye~aleIyD~ei  274 (491)
T KOG2610|consen  260 G----AEYEKALEIYDREI  274 (491)
T ss_pred             c----cchhHHHHHHHHHH
Confidence            3    46788888887643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.74  E-value=23  Score=35.52  Aligned_cols=151  Identities=14%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             HHhcCCCHHHHHHHHHHHH---------hCCC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHH----
Q 019340          146 MYWEMDKKEAAISLYRQAA---------VLGD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQ----  208 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~---------~~~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~----  208 (342)
                      +|...|.+++|+..|.+.-         +.-+    .+....+|.-|.  ..|+.+.|...|.++-+-....-+|.    
T Consensus       846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e--~~g~lkaae~~flea~d~kaavnmyk~s~l  923 (1636)
T KOG3616|consen  846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE--AEGDLKAAEEHFLEAGDFKAAVNMYKASEL  923 (1636)
T ss_pred             eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH--hccChhHHHHHHHhhhhHHHHHHHhhhhhh
Confidence            4444567777777777642         2222    234555666666  77888888888877643211111111    


Q ss_pred             HHHHHh----cCCCCCCCHHHHHH-HHHHHHHCCCH--HHHHHHHHHH-----HcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340          209 LALCLH----RGRGVDFNLQEAAR-WYLRAAEGGYV--RAMYNTSLCY-----SFGEGLPLSHRQARKWMKRAADCGHGK  276 (342)
Q Consensus       209 lg~~~~----~g~~~~~~~~~A~~-~~~~A~~~~~~--~a~~~lg~~y-----~~g~g~~~~~~~A~~~~~~a~~~~~~~  276 (342)
                      ....|.    +|+   .|.++-+. .+-+.+- |++  .-.+..|.+-     ....+   .++-|...-+.++...-++
T Consensus       924 w~dayriaktegg---~n~~k~v~flwaksig-gdaavkllnk~gll~~~id~a~d~~---afd~afdlari~~k~k~~~  996 (1636)
T KOG3616|consen  924 WEDAYRIAKTEGG---ANAEKHVAFLWAKSIG-GDAAVKLLNKHGLLEAAIDFAADNC---AFDFAFDLARIAAKDKMGE  996 (1636)
T ss_pred             HHHHHHHHhcccc---ccHHHHHHHHHHHhhC-cHHHHHHHHhhhhHHHHhhhhhccc---chhhHHHHHHHhhhccCcc
Confidence            111121    111   12222221 2222221 111  1122223222     11122   5667777777777766677


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      ....++.-+...|.+++|-+.|-.|+.++
T Consensus       997 vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            88889998999999999999999998765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=87.84  E-value=6.5  Score=30.44  Aligned_cols=43  Identities=16%  Similarity=-0.041  Sum_probs=35.8

Q ss_pred             cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340          272 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN  314 (342)
Q Consensus       272 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~  314 (342)
                      ..+++.+..+|.+|...|+..++-+.+++|++.|-.+|+.+..
T Consensus       117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~kEAC~nIn  159 (161)
T PF09205_consen  117 EINPEFLVKIANAYKKLGNTREANELLKEACEKGLKEACRNIN  159 (161)
T ss_dssp             -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchHHHHHHhc
Confidence            3568888999999999999999999999999999999997653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.72  E-value=6.4  Score=28.30  Aligned_cols=47  Identities=15%  Similarity=0.166  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHHHHHhC----C-------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          119 KNLDKALDSFLKGAAR----G-------STLAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~----~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      +|+..|++.+.+..+.    +       ...+..++|.++...|++++|+..++.|+.
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~   69 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR   69 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5777777666666542    1       134566777777777777888777777764

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.56  E-value=14  Score=30.11  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHH-----HHHHHcCCccCHH
Q 019340          119 KNLDKALDSFLKGAARG----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNL-----GISYLQAQPANAE  188 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~L-----g~~~~~g~~~~~~  188 (342)
                      +..++|+.-|....+-|    ...+.+..|.+..+.|+...|+.+|..+..- ..|.....+     +.++.  +.+.|+
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv--D~gsy~  149 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV--DNGSYD  149 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh--ccccHH
Confidence            44555666665554443    2345566666666667777777777665533 333333222     33333  455555


Q ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          189 EAVKLLYQASIAGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       189 ~A~~~~~~a~~~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      ....-.+.....+++   .+.-.||..-..    .+++.+|..||...++
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHHHHHHHHHc
Confidence            544444443333332   233345544444    4456666666655544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=87.11  E-value=30  Score=33.39  Aligned_cols=173  Identities=12%  Similarity=-0.031  Sum_probs=100.6

Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHHhCCC---HHHHHHHHHHHHc-CCccC
Q 019340          127 SFLKGAAR--GSTLAMVDAGLMYWEMDK--------------KEAAISLYRQAAVLGD---PAGQFNLGISYLQ-AQPAN  186 (342)
Q Consensus       127 ~~~~A~~~--~~~~a~~~lg~~~~~~~~--------------~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~-g~~~~  186 (342)
                      .|++++..  -+++.|+..+..+...++              .+++...|+++++.-.   .-.++.++..-.. .+...
T Consensus       267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~  346 (656)
T KOG1914|consen  267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK  346 (656)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence            34555542  366666655554444444              7888999999886522   2222222222110 01114


Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340          187 AEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR  263 (342)
Q Consensus       187 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~  263 (342)
                      .++-..++.+++...   ..-++.++=..-..    ..-.+.|...|.+|-+.+...-+..++.++..-. ..+|..-|.
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR----~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~Af  421 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR----AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAF  421 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHH----hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHH
Confidence            666777777766532   23334443333333    2236788899999987643322222222221110 245999999


Q ss_pred             HHHHHHHHc-CC-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          264 KWMKRAADC-GH-GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       264 ~~~~~a~~~-~~-~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +.|+..+.. ++ +.--+.....+...++-..+...|++++..
T Consensus       422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999999987 44 444455556667789999999999999887

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.98  E-value=2.4  Score=37.21  Aligned_cols=58  Identities=14%  Similarity=0.175  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhh
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQ  319 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~  319 (342)
                      |+.||.+|+..  +....++.||.++...|+.-.|+.||-|++-.  ..+.|..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            44555555543  34455555555555555555555555555432  233444444444433

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.73  E-value=7.5  Score=37.99  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=64.8

Q ss_pred             cCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCH
Q 019340          118 RKNLDKALDSFLKGAAR--------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANA  187 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~  187 (342)
                      .+++..++++|+..+.-        ..+..+..++.+|......++|+++++.|=+.+  ++-..+.+-.+..  ..++.
T Consensus       367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~--~E~~S  444 (872)
T KOG4814|consen  367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL--AEDKS  444 (872)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH--Hhcch
Confidence            37899999999998763        235677889999999999999999999997665  7777777777766  67888


Q ss_pred             HHHHHHHHHHHH
Q 019340          188 EEAVKLLYQASI  199 (342)
Q Consensus       188 ~~A~~~~~~a~~  199 (342)
                      ++|+.+..+...
T Consensus       445 e~AL~~~~~~~s  456 (872)
T KOG4814|consen  445 EEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHHHh
Confidence            999988887643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=86.38  E-value=2.9  Score=37.08  Aligned_cols=61  Identities=23%  Similarity=0.193  Sum_probs=49.9

Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA  210 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg  210 (342)
                      ...|+.++|..+|+.|+..  .+++++..+|....  ..++.-+|-.||-+++.  +++.+|..+-.
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E--~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE--MHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH--hhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3678999999999998765  88999999999887  66889999999999754  67777766543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.91  E-value=4.4  Score=25.80  Aligned_cols=36  Identities=8%  Similarity=-0.024  Sum_probs=20.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFN  174 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~  174 (342)
                      .++.++..+...|++++|..+.+.+++  +++..+...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            345666666666777777776666653  345555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.69  E-value=20  Score=34.02  Aligned_cols=117  Identities=17%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             HHHHHh-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHH
Q 019340          128 FLKGAA-RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQ  206 (342)
Q Consensus       128 ~~~A~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~  206 (342)
                      .+.|++ ..|++..+.|+.   +.|+++.|.+.   |-+.+++.-|-.||...+  ..++++.|..+|+++-   +... 
T Consensus       311 ~e~AL~~~~D~~~rFeLAl---~lg~L~~A~~~---a~~~~~~~~W~~Lg~~AL--~~g~~~lAe~c~~k~~---d~~~-  378 (443)
T PF04053_consen  311 PELALQFVTDPDHRFELAL---QLGNLDIALEI---AKELDDPEKWKQLGDEAL--RQGNIELAEECYQKAK---DFSG-  378 (443)
T ss_dssp             HHHHHHHSS-HHHHHHHHH---HCT-HHHHHHH---CCCCSTHHHHHHHHHHHH--HTTBHHHHHHHHHHCT----HHH-
T ss_pred             HHHHHhhcCChHHHhHHHH---hcCCHHHHHHH---HHhcCcHHHHHHHHHHHH--HcCCHHHHHHHHHhhc---Cccc-
Confidence            334444 246666666653   56777777654   334467778888888888  7788888888887752   2222 


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRA  269 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  269 (342)
                        |..+|.-    .+|.++=.+.-..|...++....+.-+.+.    |   |.++..+.+.++
T Consensus       379 --L~lLy~~----~g~~~~L~kl~~~a~~~~~~n~af~~~~~l----g---d~~~cv~lL~~~  428 (443)
T PF04053_consen  379 --LLLLYSS----TGDREKLSKLAKIAEERGDINIAFQAALLL----G---DVEECVDLLIET  428 (443)
T ss_dssp             --HHHHHHH----CT-HHHHHHHHHHHHHTT-HHHHHHHHHHH----T----HHHHHHHHHHT
T ss_pred             --cHHHHHH----hCCHHHHHHHHHHHHHccCHHHHHHHHHHc----C---CHHHHHHHHHHc
Confidence              2223332    334444445555555556555544444433    2   566666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.02  E-value=3.7  Score=36.79  Aligned_cols=86  Identities=14%  Similarity=0.143  Sum_probs=63.6

Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340          108 GKRFKHGRGVRKNLDKALDSFLKGAARG------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY  179 (342)
Q Consensus       108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  179 (342)
                      |.-|..    .+++..|+..|.+++...      ++..+.|-+-+....|++..|+.=..+|+..  .+..+++.-+.|+
T Consensus        88 GN~~fK----~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   88 GNEYFK----EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             hHHHHH----hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            555555    478888888888888752      2334567777777788888888888888754  6677888888888


Q ss_pred             HcCCccCHHHHHHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +  ....+.+|+.|.+..+.
T Consensus       164 ~--eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  164 L--ELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             H--HHHHHHHHHHHHhhhhh
Confidence            8  77788888888877644

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.83  E-value=1.5  Score=42.09  Aligned_cols=84  Identities=12%  Similarity=-0.042  Sum_probs=69.6

Q ss_pred             ccHHHHHHHHHHHHHcCCH---HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340          257 LSHRQARKWMKRAADCGHG---KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVD  333 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  333 (342)
                      .|...|+.|+..|....+.   -...+|++++..-+-..+|-.++.+++.+.+.+..+.+.....++-..+.+.|++.++
T Consensus       621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~  700 (886)
T KOG4507|consen  621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR  700 (886)
T ss_pred             CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence            3999999999999876443   3568899999888888899999999999888888888887777888888999998888


Q ss_pred             hhhcCCC
Q 019340          334 SWRAMPS  340 (342)
Q Consensus       334 ~~~~~~~  340 (342)
                      ...+..|
T Consensus       701 ~a~~~~~  707 (886)
T KOG4507|consen  701 QALKLTT  707 (886)
T ss_pred             HHHhcCC
Confidence            8776655

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=84.61  E-value=3.2  Score=37.14  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      +-.-|.-|+..+++..|+..|.+++..  +|+    -.+.|-+-+.+  -.+++..++.-..+++..  .+..+++.=+.
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~--~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL--YLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            345788888999999999999999866  333    34556666666  678999999999888764  57888898899


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      |+..    ...+.+|..|.+..+.
T Consensus       162 c~~e----Le~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  162 CLLE----LERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHH----HHHHHHHHHHHhhhhh
Confidence            9887    6677888888877654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=84.55  E-value=1.3  Score=41.38  Aligned_cols=105  Identities=22%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHhhhcCCHHHHH
Q 019340          220 DFNLQEAARWYLRAAEGGYVRA--MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~~~~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      .++++.|+..|.||++...-.|  +-+-+..+..    ..++..|+.-+.+|++.++  ..+++.-|.+....+.+.+|+
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            6789999999999999865333  3344455533    3399999999999998754  567788888888899999999


Q ss_pred             HHHHHHHHcCcH--HHHHHHHHHHhhcChhcHHHH
Q 019340          296 VYLELATRAGET--AADHVKNVILQQLSATSRDRA  328 (342)
Q Consensus       296 ~~~~~a~~~~~~--~a~~~~~~~~~~~~~~~~~~a  328 (342)
                      .-|+......+.  ++......+....+...++.+
T Consensus        93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~a  127 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKA  127 (476)
T ss_pred             HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhc
Confidence            999998877554  444444444444444344333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.48  E-value=57  Score=34.23  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      +.|..|..||.+-.  +.+...+|++.|-|+   ++|..+.+.-.....    .+.+++-++++..|-.
T Consensus      1102 n~p~vWsqlakAQL--~~~~v~dAieSyika---dDps~y~eVi~~a~~----~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL--QGGLVKDAIESYIKA---DDPSNYLEVIDVASR----TGKYEDLVKYLLMARK 1161 (1666)
T ss_pred             CChHHHHHHHHHHH--hcCchHHHHHHHHhc---CCcHHHHHHHHHHHh----cCcHHHHHHHHHHHHH
Confidence            56677777777777  566777777777655   455555555555544    4566666666665543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.32  E-value=0.44  Score=42.61  Aligned_cols=49  Identities=16%  Similarity=-0.085  Sum_probs=24.0

Q ss_pred             ccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          184 PANAEEAVKLLYQASIAGHV--RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       184 ~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .|++++|+..|-++++...+  ..+..-+.++..    .+....|++-+..|++.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~airD~d~A~ei  177 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAIRDCDFAIEI  177 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeee----ccCCchhhhhhhhhhcc
Confidence            45566666666666655432  222233444433    44455555555555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.25  E-value=20  Score=34.10  Aligned_cols=163  Identities=18%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS  178 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  178 (342)
                      ....|.++.+       .+|++++....+..--. . +.+-...++..+...|-++.|++.      ..|++.-+.|+.-
T Consensus       264 ~~~~fk~av~-------~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~------~~D~~~rFeLAl~  330 (443)
T PF04053_consen  264 SELEFKTAVL-------RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQF------VTDPDHRFELALQ  330 (443)
T ss_dssp             HHHHHHHHHH-------TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHH------SS-HHHHHHHHHH
T ss_pred             HHHHHHHHHH-------cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhh------cCChHHHhHHHHh
Confidence            3445555544       36777766666422111 1 233345566666677777776654      2566666665543


Q ss_pred             HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccc
Q 019340          179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS  258 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~  258 (342)
                           .|+.+.|.+..+   +.+++.-|-.||.....    .+|.+.|.++|+++-      -+-.|..+|.. .|   |
T Consensus       331 -----lg~L~~A~~~a~---~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~------d~~~L~lLy~~-~g---~  388 (443)
T PF04053_consen  331 -----LGNLDIALEIAK---ELDDPEKWKQLGDEALR----QGNIELAEECYQKAK------DFSGLLLLYSS-TG---D  388 (443)
T ss_dssp             -----CT-HHHHHHHCC---CCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT-------HHHHHHHHHH-CT----
T ss_pred             -----cCCHHHHHHHHH---hcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhc------CccccHHHHHH-hC---C
Confidence                 456666654432   23467788888888877    678888888888853      23334444432 12   6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          259 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       259 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                      .++=.+..+.|...++....+.-+.   -.|+.++.+..+..+
T Consensus       389 ~~~L~kl~~~a~~~~~~n~af~~~~---~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  389 REKLSKLAKIAEERGDINIAFQAAL---LLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHH---HHT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHH---HcCCHHHHHHHHHHc
Confidence            6555566666666666555443322   246666666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.06  E-value=16  Score=28.37  Aligned_cols=40  Identities=25%  Similarity=0.214  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHH
Q 019340          167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQ  208 (342)
Q Consensus       167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~  208 (342)
                      .+|+-+..+|.+|.  ..|+..++-+.+.+|.+.|-.+|+.+
T Consensus       118 ~~p~~L~kia~Ay~--klg~~r~~~ell~~ACekG~kEAC~n  157 (161)
T PF09205_consen  118 INPEFLVKIANAYK--KLGNTREANELLKEACEKGLKEACRN  157 (161)
T ss_dssp             S-HHHHHHHHHHHH--HTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCHHHHHHHHHHHH--HhcchhhHHHHHHHHHHhchHHHHHH
Confidence            34444444555544  44455555555555555555554443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.37  E-value=8.9  Score=33.50  Aligned_cols=58  Identities=12%  Similarity=0.051  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Q 019340          124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ  181 (342)
Q Consensus       124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~  181 (342)
                      |..+|.+|+..  ++...+.+||.++...+|.=.|+.+|-+++--  ..+.|..||..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888888885  56778888999998889999999999888743  557788888888773

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.05  E-value=9.7  Score=27.24  Aligned_cols=41  Identities=10%  Similarity=-0.087  Sum_probs=25.0

Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 019340          126 DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL  166 (342)
Q Consensus       126 ~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~  166 (342)
                      .-++++++.  ++..+.+.++..+...|++++|+..+-..+..
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            334444443  46677777777777777777777777776654

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=82.91  E-value=6  Score=39.37  Aligned_cols=65  Identities=22%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             CCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 019340          116 GVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLGD-PAGQFNLGISYL  180 (342)
Q Consensus       116 g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~~~  180 (342)
                      +.+||.++|+.....+++..   .++.+...|+||...         +..+.|++||++|.+... -.+=.|++.++.
T Consensus       254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~  331 (1226)
T KOG4279|consen  254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLR  331 (1226)
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHH
Confidence            45788888888888888863   456677778888553         457788889998886632 223334444444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=82.62  E-value=2.7  Score=35.65  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=46.0

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD  168 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~  168 (342)
                      .+|.+.|.+.|.+|+++  .+...|+.+|......|+++.|...|++.++.+.
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp   60 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP   60 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence            57899999999999997  5888999999999999999999999999998743

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=82.55  E-value=11  Score=37.55  Aligned_cols=114  Identities=13%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHcC---CHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-------DPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAG---HVR  204 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~---~~~  204 (342)
                      +++...++-.-|....||+.-+++-+..-..-       .....|..+.++.. ...||.++|+.....+++..   .|+
T Consensus       200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD  279 (1226)
T KOG4279|consen  200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD  279 (1226)
T ss_pred             CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence            45666677777888889998888776543332       12222233333332 46899999999999988864   577


Q ss_pred             HHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 019340          205 AQYQLALCLHRG-----RGVDFNLQEAARWYLRAAEGG-YVRAMYNTSLCY  249 (342)
Q Consensus       205 a~~~lg~~~~~g-----~~~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~y  249 (342)
                      .+...|.+|.+-     -......+.|++||++|.+.. ...+-.|++.++
T Consensus       280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL  330 (1226)
T KOG4279|consen  280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLL  330 (1226)
T ss_pred             eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHH
Confidence            888889998642     122345678999999998864 333445666555

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.47  E-value=2.6  Score=29.00  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      .++|+.+..+|++.+             ..|++++|+.+|.+|++
T Consensus         3 l~kai~Lv~~A~~eD-------------~~gny~eA~~lY~~ale   34 (75)
T cd02680           3 LERAHFLVTQAFDED-------------EKGNAEEAIELYTEAVE   34 (75)
T ss_pred             HHHHHHHHHHHHHhh-------------HhhhHHHHHHHHHHHHH
Confidence            445666666654432             34666666666666665

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.22  E-value=26  Score=28.63  Aligned_cols=138  Identities=14%  Similarity=0.054  Sum_probs=92.9

Q ss_pred             HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-C-----HHHHHHH
Q 019340           70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-S-----TLAMVDA  143 (342)
Q Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~-----~~a~~~l  143 (342)
                      ..+..+-..+...+|..-+....+.....-...+.+..|-+..+    +++...|+..|....... .     ..+.+.-
T Consensus        63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~----kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ----KGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh----cccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            33333334455556654444444433332234677778888777    799999999999987753 2     3455666


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVLGDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQYQLALCL  213 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~  213 (342)
                      +.++...|-|++-..-.+...-.++|   .+--.||..-+  ..|++.+|..+|...++. +-|+...+-+++.
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~--kagd~a~A~~~F~qia~Da~aprnirqRAq~m  210 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY--KAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH--hccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence            77788889999988877776655554   35556888888  889999999999997764 3455554444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=81.99  E-value=2.3  Score=39.83  Aligned_cols=93  Identities=15%  Similarity=0.131  Sum_probs=64.6

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--DPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      .++++.|+.+|.+|++++  .+...-+-+..+...+++..|+.=+.+|++.+  ...+++.-|.++.  ..+.+.+|+.-
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m--~l~~~~~A~~~   94 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM--ALGEFKKALLD   94 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH--hHHHHHHHHHH
Confidence            368888888888888875  33334456677778888888888888888764  3456666667766  66677888888


Q ss_pred             HHHHHH--cCCHHHHHHHHHH
Q 019340          194 LYQASI--AGHVRAQYQLALC  212 (342)
Q Consensus       194 ~~~a~~--~~~~~a~~~lg~~  212 (342)
                      |++...  ++++.+.-.+-.|
T Consensus        95 l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   95 LEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHhhhcCcCcHHHHHHHHHH
Confidence            877543  5566665555444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.24  E-value=65  Score=32.54  Aligned_cols=14  Identities=7%  Similarity=0.173  Sum_probs=9.4

Q ss_pred             CccCHHHHHHHHHH
Q 019340          183 QPANAEEAVKLLYQ  196 (342)
Q Consensus       183 ~~~~~~~A~~~~~~  196 (342)
                      ...|+++|++||++
T Consensus       673 ki~d~dkale~fkk  686 (1636)
T KOG3616|consen  673 KIHDFDKALECFKK  686 (1636)
T ss_pred             HhhCHHHHHHHHHc
Confidence            35677777777765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.89  E-value=22  Score=27.71  Aligned_cols=63  Identities=5%  Similarity=0.022  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          136 STLAMVDAGLMYWEM---DKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~---~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      ....+++++.++...   .|..+.+..++..+..    +.-+..|.|+..+.  ..++|++++.|....++.
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y--RlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY--RLKEYSKSLRYVDALLET  100 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH--HHhhHHHHHHHHHHHHhh
Confidence            345566777766554   4667777777777753    33467777777777  777788887777776653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.79  E-value=48  Score=33.74  Aligned_cols=58  Identities=10%  Similarity=0.046  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      ..+...|.-++..||+++|+.+|.+.+.. ..+..+-.    |.  +.+....=..|++...+.+
T Consensus       369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k----fL--daq~IknLt~YLe~L~~~g  427 (933)
T KOG2114|consen  369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK----FL--DAQRIKNLTSYLEALHKKG  427 (933)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH----hc--CHHHHHHHHHHHHHHHHcc
Confidence            34556677777889999999999988866 33333332    23  4455555566666666655

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=80.68  E-value=38  Score=29.58  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=12.8

Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340          201 GHVRAQYQLALCLHRGRGVDFNLQEAARWY  230 (342)
Q Consensus       201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  230 (342)
                      |+|+-+..+|..|..    .+++.+|..+|
T Consensus        88 Gdp~LH~~~a~~~~~----e~~~~~A~~Hf  113 (260)
T PF04190_consen   88 GDPELHHLLAEKLWK----EGNYYEAERHF  113 (260)
T ss_dssp             --HHHHHHHHHHHHH----TT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh----hccHHHHHHHH
Confidence            455556666666555    44555555554

; PDB: 3LKU_E 2WPV_G.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.34  E-value=50  Score=30.67  Aligned_cols=82  Identities=12%  Similarity=-0.028  Sum_probs=36.7

Q ss_pred             cCCHHHHHHHHHHHHhC--CC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GS--TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVK  192 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~--~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~  192 (342)
                      .||-..|...-.++..+  .|  +.+++.-+..-.-.|+++.|.+-|+-.++.-...- ..|=.+|.. ...|+.+.|+.
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRl-lGLRgLyleAqr~GareaAr~  175 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRL-LGLRGLYLEAQRLGAREAARH  175 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHH-HhHHHHHHHHHhcccHHHHHH
Confidence            35555555555555432  12  22233333333445666666666655443211111 111122221 23566666666


Q ss_pred             HHHHHHHc
Q 019340          193 LLYQASIA  200 (342)
Q Consensus       193 ~~~~a~~~  200 (342)
                      |-+++...
T Consensus       176 yAe~Aa~~  183 (531)
T COG3898         176 YAERAAEK  183 (531)
T ss_pred             HHHHHHhh
Confidence            66665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
2xm6_A	490	Crystal Structure Of The Protein Corresponding To L		9e-10
2xm6_A	490	Crystal Structure Of The Protein Corresponding To L		4e-09

>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 108 GKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQ 162
           G R+ +G GV ++  +A+  + K A +G   A  + G+MY E     +DK E+ +  +R 
Sbjct: 82  GLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES-VKWFRL 140
Query: 163 AAVLGDPAGQFNLGISYLQAQPANAEE--AVKLLYQASIAGHVRAQYQLALCLHRGRGVD 220
           AA  G  +GQ ++G +Y +      +   A +   +A+  G+V +  QL     RG GV+
Sbjct: 141 AAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVE 200
Query: 221 FNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLE 280
            N   +A+WY ++A  G      + +  Y FG G+   + Q+R    ++A+ G+  AQ  
Sbjct: 201 RNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFR 260
Query: 281 HGL----GLFTEGEMMKAVVYLELATRAGETAADH 311
            G     GL    E +KA+ +   +   G +   +
Sbjct: 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295

>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus C5321 From Cft073 E.Coli Strain Length = 490

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 176 GISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE 235
           G+  L + PA     ++ L Q + +G  +AQ +L     +G     +L +A  W+ RAAE
Sbjct: 12  GLFALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE 71
Query: 236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMK-- 293
            GY  A Y   L Y  GEG+P  + QA  W K+AA  G  +AQ   G+ ++ EG  +K  
Sbjct: 72  QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGV-MYHEGNGVKVD 130
Query: 294 ---AVVYLELATRAGETAADHVKNVILQQLSATSRDRAM 329
              +V +  LA   G  +          +    +RD  M
Sbjct: 131 KAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	4e-46
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-43
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-40
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	6e-33
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	7e-20
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	2e-10
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-47
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	7e-45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	1e-43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-40
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	4e-33
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	4e-28
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	8e-15
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-40
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-36
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	8e-25
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-20
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	1e-15
1klx_A	138	Cysteine rich protein B; structural genomics, heli	3e-35
1klx_A	138	Cysteine rich protein B; structural genomics, heli	4e-22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	6e-14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  163 bits (415), Expect = 1e-48
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 18/223 (8%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
                L  G  +  G+GV KNL KA   + K      +      G +Y+       +  +
Sbjct: 39  SGCFNL--GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNK 96

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
            A+  Y +A  L    G  +LG  Y   +    + ++AV+   +A           L   
Sbjct: 97  -ALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL 155

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
              GRG   +L++A   Y +A +       +N    Y  GEG   + ++A     +A + 
Sbjct: 156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215

Query: 273 GHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAA 309
            +G           +G G        +A+   +   + G   A
Sbjct: 216 ENGGGCFNLGAMQYNGEG--VTRNEKQAIENFKKGCKLGAKGA 256

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  156 bits (398), Expect = 4e-46
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
               LL  G  +  G+GV +N +KAL  + K             G +Y        D K+
Sbjct: 75  NGCHLL--GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK 132

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
           A +  + +A  L D  G   LG  Y   +  P + ++A+    +A         +     
Sbjct: 133 A-VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
            H G G   N +EA   Y +A E       +N       GEG+  + +QA +  K+    
Sbjct: 192 YHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251

Query: 273 GHGKAQ 278
           G   A 
Sbjct: 252 GAKGAC 257

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  150 bits (380), Expect = 2e-43
 Identities = 40/206 (19%), Positives = 67/206 (32%), Gaps = 16/206 (7%)

Query: 117 VRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLGDPAG 171
             K+  +A   F K           + G++Y+     E + K+AA S Y +A  L    G
Sbjct: 18  KEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA-SFYAKACDLNYSNG 76

Query: 172 QFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 229
              LG  Y   Q    N  +A++   +A    +      L    H G+ V  + ++A  +
Sbjct: 77  CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEY 136

Query: 230 YLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------LEHGL 283
           + +A +             Y  G G P   ++A     +A D               HG 
Sbjct: 137 FTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGE 196

Query: 284 GLFTEGEMMKAVVYLELATRAGETAA 309
           G        +A+     A        
Sbjct: 197 G--ATKNFKEALARYSKACELENGGG 220

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  141 bits (359), Expect = 2e-40
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 10/185 (5%)

Query: 133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEA 190
           A      +V  G   ++      A   + +A  L + +G FNLG+ Y Q Q    N ++A
Sbjct: 2   AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKA 61

Query: 191 VKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS 250
                +A    +    + L    + G+GV  N  +A ++Y +A +  Y     +    Y 
Sbjct: 62  ASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH 121

Query: 251 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEGE-----MMKAVVYLELATRA 304
            G+ +    ++A ++  +A D   G       LG L+  G      + KA+   + A   
Sbjct: 122 DGKVVTRDFKKAVEYFTKACDLNDGDGC--TILGSLYDAGRGTPKDLKKALASYDKACDL 179

Query: 305 GETAA 309
            ++  
Sbjct: 180 KDSPG 184

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score =  122 bits (308), Expect = 6e-33
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
           E    L  G  +  G+ V ++  KA++ F K             G +Y        D K+
Sbjct: 111 EGCASL--GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK 168

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
           A  + Y +A  L D  G FN G  Y   +    N +EA+    +A    +    + L   
Sbjct: 169 AL-ASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAM 227

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCY 249
            + G GV  N ++A   + +  + G   A        
Sbjct: 228 QYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLK 264

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 86.9 bits (216), Expect = 7e-20
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
           +   +L  G  +  GRG  K+L KAL S+ K      +    +AG MY        + KE
Sbjct: 147 DGCTIL--GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
           A  + Y +A  L +  G FNLG      +    N ++A++   +    G   A   L   
Sbjct: 205 AL-ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQL 263

Query: 213 LHRG 216
             + 
Sbjct: 264 KIKV 267

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
                   G  + HG G  KN  +AL  + K     +     + G M +       ++K+
Sbjct: 183 PGCFNA--GNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 240

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ 183
           A I  +++   LG       L    ++  
Sbjct: 241 A-IENFKKGCKLGAKGACDILKQLKIKVH 268

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  166 bits (422), Expect = 2e-47
 Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 18/223 (8%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
           +A + L  G R+  G    K+L +A+D F + A +G T A    GL Y        D  +
Sbjct: 40  KAQLEL--GYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQ 97

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
            A+  Y++AA+ G P  Q NLG+ Y +      +  E+VK    A+  G    Q  +   
Sbjct: 98  -AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA 156

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
              G GV  +   A  WY +AAE G V +       YS G G+  +   + +W +++A  
Sbjct: 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216

Query: 273 GHGKAQ------LEHGLGLFTEGEMMKAVVYLELATRAGETAA 309
           G    Q         G+G     +  ++ V    +   G + A
Sbjct: 217 GDELGQLHLADMYYFGIG--VTQDYTQSRVLFSQSAEQGNSIA 257

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  159 bits (404), Expect = 7e-45
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 17/223 (7%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
           +A   L  G  +  G GV+ +  +++  F   A +G        G  Y+       D   
Sbjct: 112 QAQQNL--GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALC 212
           A    Y +AA  G+      LG  Y +      N   + +   +++ +G    Q  LA  
Sbjct: 170 AR-EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADM 228

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
            + G GV  +  ++   + ++AE G   A +        G        +A +W +++A+ 
Sbjct: 229 YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288

Query: 273 GHGKAQLEHGLGLFTEGE------MMKAVVYLELATRAGETAA 309
           G+   Q      L+ +G         +A+ +   +   G+  A
Sbjct: 289 GNSDGQYYLAH-LYDKGAEGVAKNREQAISWYTKSAEQGDATA 330

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  155 bits (395), Expect = 1e-43
 Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 16/221 (7%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW------EMDKK 153
            A   L  G   + G    K   KAL+ + K A +G++        +Y         +++
Sbjct: 256 IAQFRL--GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313

Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYL-QAQPANAEEAVKLLYQASIAGHVRAQYQLALC 212
           +A IS Y ++A  GD   Q NLG  Y         ++AV+   +A+  G   AQ+ L   
Sbjct: 314 QA-ISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA 372

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
           L +G+GV  + Q+AA W  +AAE G   A       Y +G G+   + QA  W   A+  
Sbjct: 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432

Query: 273 GHGKAQLE---HGLGLFTEGEMMKAVVYLELATRAGETAAD 310
                  E         T  ++ +A     L+ +  E  A 
Sbjct: 433 DMNLFGTENRNITEKKLTAKQLQQA---ELLSQQYIEKYAP 470

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  153 bits (390), Expect = 6e-43
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 16/210 (7%)

Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLG 167
               +    +  L+   + A  G   A ++ G  Y+       D  +A    +R+AA  G
Sbjct: 15  ALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAM-DWFRRAAEQG 73

Query: 168 DPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 225
               ++ LG+ Y+  +  P +  +AV    +A++ G  +AQ  L +  H G GV  +  E
Sbjct: 74  YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133

Query: 226 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------L 279
           + +W+  AAE G      +    Y  G+G+   +  AR+W  +AA+ G+  +        
Sbjct: 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMY 193

Query: 280 EHGLGLFTEGEMMKAVVYLELATRAGETAA 309
             GLG   E     +  +   +  +G+   
Sbjct: 194 SRGLG--VERNDAISAQWYRKSATSGDELG 221

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  135 bits (342), Expect = 3e-36
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 11/199 (5%)

Query: 100 EAMVLLRWGKRFKHG-RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EA 155
           +    L     +  G  GV KN ++A+  + K A +G   A  + G +Y+ +  +   + 
Sbjct: 292 DGQYYL--AHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKK 349

Query: 156 AISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCL 213
           A+  +R+AA  G+ A QFNLG + LQ +    + ++A   + +A+  G   AQ QL    
Sbjct: 350 AVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY 409

Query: 214 HRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAA 270
           + G GV+ +  +A  W+  A+                     + L  +   +++++++ A
Sbjct: 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYA 469

Query: 271 DCGHGKAQLEHGLGLFTEG 289
                + Q          G
Sbjct: 470 PEAWARMQKLKAQSAVKTG 488

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score =  113 bits (285), Expect = 3e-28
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARW 229
                 G+  L + PA     ++ L Q + +G  +AQ +L     +G     +L +A  W
Sbjct: 6   LAVMLTGLFALVSLPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDW 65

Query: 230 YLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQ------LEHGL 283
           + RAAE GY  A Y   L Y  GEG+P  + QA  W K+AA  G  +AQ         G 
Sbjct: 66  FRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGN 125

Query: 284 GLFTEGEMMKAVVYLELATRAGETAA 309
           G   + +  ++V +  LA   G  + 
Sbjct: 126 G--VKVDKAESVKWFRLAAEQGRDSG 149

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  147 bits (372), Expect = 1e-40
 Identities = 47/251 (18%), Positives = 84/251 (33%), Gaps = 20/251 (7%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDK------K 153
              V L     ++  +   +   + L     G +RG+  A     +     D       +
Sbjct: 177 ICYVEL--ATVYQKKQQP-EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233

Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQ-PANAEEAVKLLYQASIAGHVRAQYQLALC 212
           + A +L  + A  G PA   +L           + E+ +K L     A   RA+  L   
Sbjct: 234 KTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKL 292

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
            + G+ V  + + A   + +A       A Y     Y  G    +  ++A   +  AA  
Sbjct: 293 YYEGKWVPADAKAAEAHFEKAVGREV-AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351

Query: 273 GHGKAQL------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRD 326
           G   A          G G  T+ + + A V+ +LA       A+ +   +   L+   R 
Sbjct: 352 GQNSADFAIAQLFSQGKG--TKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRA 409

Query: 327 RAMLVVDSWRA 337
               +V    A
Sbjct: 410 EGQRLVQQELA 420

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  138 bits (349), Expect = 2e-37
 Identities = 38/218 (17%), Positives = 69/218 (31%), Gaps = 9/218 (4%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKK---EAA 156
            A  +    +          +   A    L+  A G   + V    + ++  +    E  
Sbjct: 212 TAQRVDSVARVLGDATLGTPDEKTAQA-LLEKIAPGYPASWVSLAQLLYDFPELGDVEQM 270

Query: 157 ISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLH 214
           +           P  +  LG  Y + +  PA+A+ A    ++ ++   V A Y L     
Sbjct: 271 MKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAH-FEKAVGREVAADYYLGQIYR 329

Query: 215 RGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH 274
           RG       Q+A    L AA  G   A +  +  +S G+G       A  + + A     
Sbjct: 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389

Query: 275 GKAQ--LEHGLGLFTEGEMMKAVVYLELATRAGETAAD 310
            +A           T  +  +    ++    A  T A 
Sbjct: 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQ 427

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  126 bits (319), Expect = 4e-33
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 9/174 (5%)

Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLG 167
           +      ++++ +     G A     A +  G +Y+E      D K A  + + +A    
Sbjct: 259 YDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAE-AHFEKAV-GR 316

Query: 168 DPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQE 225
           + A  + LG  Y +        ++A+  L  A+  G   A + +A    +G+G   +   
Sbjct: 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376

Query: 226 AARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL 279
           A  +   A       A    +   +       +  Q     + AA     ++ L
Sbjct: 377 AYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTL 430

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  114 bits (287), Expect = 1e-28
 Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 10/208 (4%)

Query: 110 RFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD--KKEAAISLYRQAAVLG 167
           R  +    R +   A  ++ + A  G + A V    +        +        +AA   
Sbjct: 8   RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT 67

Query: 168 DPAGQFNLGISYLQAQ---PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 224
            P  Q  LG           A   EA  LL +A   G       LA+   +      N+ 
Sbjct: 68  SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN 127

Query: 225 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG 284
              +   +    GY  A     L Y   +G    H    + + +AA        +E    
Sbjct: 128 AQQQIS-QWQAAGYPEAGLAQVLLY-RTQGTYDQHLDDVERICKAALNTTDICYVELATV 185

Query: 285 LFTEG---EMMKAVVYLELATRAGETAA 309
              +    +  + +  +E     G   A
Sbjct: 186 YQKKQQPEQQAELLKQMEAGVSRGTVTA 213

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score =  112 bits (283), Expect = 4e-28
 Identities = 40/211 (18%), Positives = 63/211 (29%), Gaps = 19/211 (9%)

Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY------WEMDKKEAAISLYRQAAVL 166
            G      + +A  +  + AA  S  A    G +        E +  EA  SL ++A   
Sbjct: 46  VGTRDPAQIKQAE-ATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAE-SLLKKAFAN 103

Query: 167 GDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQ 224
           G+      L + YLQ      N     ++  Q   AG+  A     L L+R +G      
Sbjct: 104 GEGNTLIPLAMLYLQYPHSFPNVNAQQQI-SQWQAAGYPEAGLAQVL-LYRTQGTYDQHL 161

Query: 225 EAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQL----- 279
           +      +AA           +  Y   +  P    +  K M+     G   AQ      
Sbjct: 162 DDVERICKAALNTTDICYVELATVYQKKQQ-PEQQAELLKQMEAGVSRGTVTAQRVDSVA 220

Query: 280 -EHGLGLFTEGEMMKAVVYLELATRAGETAA 309
              G       +   A   LE        + 
Sbjct: 221 RVLGDATLGTPDEKTAQALLEKIAPGYPASW 251

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 8/136 (5%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
            A   L  G+ ++ G   +    KALD  L  A  G   A      ++      + D   
Sbjct: 319 AADYYL--GQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLN 376

Query: 155 AAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH 214
           A     + A     P              PA   E  +L+ Q   A    AQ  L L   
Sbjct: 377 A-YVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHAL 435

Query: 215 RGRGVDFNLQEAARWY 230
           +    + +L E    +
Sbjct: 436 QEEDGEESLLEHHHHH 451

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  140 bits (354), Expect = 2e-40
 Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 12/200 (6%)

Query: 122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ 181
            +    + + A  G   A       +      + A    ++AA  GD      L    ++
Sbjct: 3   TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR 62

Query: 182 -AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-- 238
             Q A+  +A +L  +A  AG    +  LA  L   +    ++  A      AA      
Sbjct: 63  NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122

Query: 239 --VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQL------EHGLGLFTEG 289
             V A     L Y+ G   P    +A ++ K ++     G A+       + G   F E 
Sbjct: 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEP 182

Query: 290 EMMKAVVYLELATRAGETAA 309
              KA+ +L ++   G    
Sbjct: 183 NKQKALHWLNVSCLEGFDTG 202

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score =  129 bits (327), Expect = 3e-36
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 119 KNLDKALDSFLKGAARGSTLAMVDAGLMYW----EMDKKEAAISLYRQAAVLGDPAGQFN 174
            +  KA     K AA+G   A+     +      + D  +A   L  +A   G  +G+  
Sbjct: 32  GDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQA-RQLAEKAVEAGSKSGEIV 90

Query: 175 LGISYLQAQ--PANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAAR 228
           L    +  Q    +   A+ LL  A+        V AQ  L L    G     +  +A+ 
Sbjct: 91  LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150

Query: 229 WYLRAAE-GGYVRAMYNTSLCYSFGEGL--PLSHRQARKWMKRAADCGHGKAQ 278
           ++  ++       A Y   + +  GE      + ++A  W+  +   G     
Sbjct: 151 YFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 98.8 bits (247), Expect = 8e-25
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKE 154
           +A+ LL   +        + +  +A     K    GS    +    +         D   
Sbjct: 51  DALALL--AQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAH 107

Query: 155 AAISLYRQAAVLGDPAG----QFNLGISYLQAQ--PANAEEAVKLLYQASIAGHV-RAQY 207
           A I+L + AA   +       Q  LG+ Y      P +  +A +    +S       A+Y
Sbjct: 108 A-ITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEY 166

Query: 208 QLALCLHRGRG--VDFNLQEAARWYLRAAEGGYVRAMYN 244
              +   +G    ++ N Q+A  W   +   G+      
Sbjct: 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE 205

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 187 AEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTS 246
           A E      Q + AG  RAQY LA           + Q+A  W  +AA  G   A+   +
Sbjct: 2   ATEPGSQYQQQAEAGDRRAQYYLADTWVSSG----DYQKAEYWAQKAAAQGDGDALALLA 57

Query: 247 LCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG-LFTEGE-----MMKAVVYLEL 300
                       + QAR+  ++A + G    +    L  +    +     +  A+  L+ 
Sbjct: 58  QLKIRNPQ-QADYPQARQLAEKAVEAGSKSGE--IVLARVLVNRQAGATDVAHAITLLQD 114

Query: 301 ATRAGETAA 309
           A R  E+ A
Sbjct: 115 AARDSESDA 123

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 20/131 (15%), Positives = 49/131 (37%), Gaps = 18/131 (13%)

Query: 100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDA----GLMYW-----EM 150
              ++L   +   + +    ++  A+      A    + A VDA    GL+Y        
Sbjct: 86  SGEIVL--ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143

Query: 151 DKKEAAISLYRQAAVLGDPA-GQFNLGISYLQAQ----PANAEEAVKLLYQASIAGHVRA 205
           D  +A+   ++ ++ L      ++  G+ + Q +      N ++A+  L  + + G    
Sbjct: 144 DDVKAS-EYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202

Query: 206 QYQLALCLHRG 216
             +    + +G
Sbjct: 203 CEEFDR-ISKG 212

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score =  124 bits (313), Expect = 3e-35
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 156 AISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHR 215
           AI  Y +A  L +  G  +L  +       N ++  + L +A           L      
Sbjct: 14  AIQYYVKACELNEMFGCLSLVSNSQI----NKQKLFQYLSKACELNSGNGCRFLGDFYEN 69

Query: 216 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 275
           G+ V  +L++AA++Y +A                  G+G+  + +QA K  ++A   G  
Sbjct: 70  GKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129

Query: 276 KAQLEHGLGLF 286
            A     L  +
Sbjct: 130 DAC--GILNNY 138

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 89.8 bits (224), Expect = 4e-22
 Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 34/133 (25%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173
               + N  K                        +             +A  L    G  
Sbjct: 34  VSNSQINKQKL---------------------FQY-----------LSKACELNSGNGCR 61

Query: 174 NLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231
            LG  Y   +    +  +A +   +A           L    + G+GV  N ++A + + 
Sbjct: 62  FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121

Query: 232 RAAEGGYVRAMYN 244
           +A   G   A   
Sbjct: 122 KACRLGSEDACGI 134

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 67.1 bits (165), Expect = 6e-14
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 213 LHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 272
           +  G  V  +L++A ++Y++A E   +    +            ++ ++  +++ +A + 
Sbjct: 1   MVGGGTVKKDLKKAIQYYVKACELNEMFGCLS------LVSNSQINKQKLFQYLSKACEL 54

Query: 273 GHGKAQLEHGLGLF-TEGE-----MMKAVVYLELATRAGETAA 309
             G       LG F   G+     + KA  Y   A    +   
Sbjct: 55  NSGNGC--RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 113 HGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYW-----EMDKKEAAISLYRQAAVLG 167
           +G+ V+K+L KA   + K          +  G   +       ++K+ A+  + +A  LG
Sbjct: 69  NGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ-AVKTFEKACRLG 127

Query: 168 DPAGQFNLG 176
                  L 
Sbjct: 128 SEDACGILN 136

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 29/192 (15%)

Query: 118 RKNLDKALDSFLKGAARGSTLAMVDA----GLMYWEMDKKEAAISLYRQAAVL--GDPAG 171
            ++  +A  S               A      +Y  +   + A   +RQA  +       
Sbjct: 21  GQDYRQATASIEDALKSDPKNE--LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78

Query: 172 QFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQYQLALCLHR-GRGVDFNLQE 225
             N G  +L  +     E++    +A +A         A     +C  + G+        
Sbjct: 79  NNNYGW-FLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQ-----FGL 131

Query: 226 AARWYLRA--AEGGYVRAMYN-TSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 282
           A  +  R+  A+  +  A           G+        A  + K+           +  
Sbjct: 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-----LGDADYYFKKYQSRVEVLQADDLL 186

Query: 283 LGLFTEGEMMKA 294
           LG      +  A
Sbjct: 187 LGWKIAKALGNA 198

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 29/190 (15%)

Query: 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYL-QAQPANAEEAVKLLYQASIA 200
            + Y        A +    A      +          Y        A+E+    ++ +++
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES----FRQALS 70

Query: 201 ---GHVRAQYQL--ALCLHRGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCY-S 250
                          LC    R       E+  ++ +A           A  N  +C   
Sbjct: 71  IKPDSAEINNNYGWFLCGRLNR-----PAESMAYFDKALADPTYPTPYIANLNKGICSAK 125

Query: 251 FGEGLPLSHRQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA 308
            G+        A  ++KR+  A      A  E        G++  A  Y +      E  
Sbjct: 126 QGQ-----FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

Query: 309 ADHVKNVILQ 318
                 +  +
Sbjct: 181 QADDLLLGWK 190

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 25/122 (20%), Positives = 33/122 (27%), Gaps = 12/122 (9%)

Query: 120 NLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL 175
           +  + L              +A +        M    A     ++   L  G P     L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 176 GISYLQAQPANAEEAVKLLYQA-SIA-GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233
           G      Q     EA  LL QA   A  H      L   L          + AA  Y RA
Sbjct: 64  GRVRWTQQ--RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG----QAEAAAAAYTRA 117

Query: 234 AE 235
            +
Sbjct: 118 HQ 119

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY-LQAQPANAEEAVKLLYQASIA 200
           GL Y +    E A    R+A  +          L + +  + +P  A+E     Y+ ++A
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE----YRKALA 99

Query: 201 ---GHVRAQYQLALCLH-RGRGVDFNLQEAARWYLRAAEG----GYVRAMYNTSLCYS-F 251
               + R        L+ + R      +EA +  L A++        R   N  L     
Sbjct: 100 SDSRNARVLNNYGGFLYEQKR-----YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154

Query: 252 GEGLPLSHRQARKWMKRA--ADCGHGKAQLEHGLGLFTEGEMMKAVVYLELA 301
            +       QA+++ +++   +       LE    L+ E E + A  Y +L 
Sbjct: 155 KK-----PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 113 HGRGV----RKNLDKALDSFLKGAARGSTLAMV--DAGLMYWEMDKKEAAISLYRQAAVL 166
                     + LD++         +   LA    + G +Y E  + + AI  YR A  L
Sbjct: 37  LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96

Query: 167 --GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA---GHVRAQYQLALCLHR-GRGVD 220
                 G  NL  + + A   + E AV+    A +         +  L   L   GR   
Sbjct: 97  KPDFIDGYINLAAALVAAG--DMEGAVQAYVSA-LQYNPDLYCVRSDLGNLLKALGR--- 150

Query: 221 FNLQEAARWYLRAAE--GGYVRAMYN 244
             L+EA   YL+A E    +  A  N
Sbjct: 151 --LEEAKACYLKAIETQPNFAVAWSN 174

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 29/142 (20%)

Query: 115 RGV----RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDP- 169
            GV    +K+   ALD+F        +    + G MY  +     A   + ++    D  
Sbjct: 12  EGVLAADKKDWKGALDAFSA-VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-DKH 69

Query: 170 --AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 227
                F  G+ Y Q +    + A+K               + AL   RG  +        
Sbjct: 70  LAVAYFQRGMLYYQTE--KYDLAIK-------------DLKEALIQLRGNQLIDYKILGL 114

Query: 228 RWYLRAAEGGYVRAMYNTSLCY 249
           ++ L A E      +YN +  Y
Sbjct: 115 QFKLFACE-----VLYNIAFMY 131

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 20/148 (13%), Positives = 40/148 (27%), Gaps = 25/148 (16%)

Query: 119 KNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQF 173
              D+A+ ++   AAR   G+ L  +  G+ + ++     A    + +  L   DP    
Sbjct: 421 GEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN 479

Query: 174 NLGISYLQAQPANAEEAVKLLYQA---------SIAGHVRAQYQLALCLHR-GRGVDFNL 223
            LG+        + + A+     A         +          L     +         
Sbjct: 480 ELGVVAFNKS--DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-----Y 532

Query: 224 QEAARWYLRAAE--GGYVRAMYNTSLCY 249
             A     +               +L Y
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVY 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	100.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	100.0
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	100.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	100.0
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.89
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.87
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.85
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.83
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.82
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.81
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.8
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.79
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.79
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.79
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.78
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.77
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.76
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.74
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.74
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.74
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.73
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.69
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.68
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.68
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.67
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.61
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.47
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.47
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.47
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.46
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.42
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.42
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.42
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.41
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.38
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.33
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.33
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.31
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.3
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.29
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.29
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.27
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.23
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.23
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.22
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.2
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.17
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.16
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.14
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.14
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.13
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.1
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.09
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.04
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.02
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.96
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.95
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.77
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.74
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.73
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.73
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.71
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.66
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.65
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.6
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.56
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.47
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.34
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.24
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.14
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.11
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.03
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.9
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.85
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.79
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.43
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.92
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.72
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.66
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.77
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.3
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.87
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.57
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.52
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.66
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	91.39
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.39
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.92
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.45
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.2
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.33
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	84.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.49
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.38
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.55
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.36

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=100.00  E-value=3.7e-33  Score=263.20  Aligned_cols=255  Identities=17%  Similarity=0.163  Sum_probs=231.2

Q ss_pred             HHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcC----CCHH
Q 019340           81 LRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAM--VDAGLMYWEM----DKKE  154 (342)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~--~~lg~~~~~~----~~~~  154 (342)
                      +.++......+.+.. ..+++.+++.||.+|.. .|+.+++++|+.+|+++++.++..+.  ++||.+|..+    +|++
T Consensus       157 ~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~-~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          157 YDQHLDDVERICKAA-LNTTDICYVELATVYQK-KQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             GGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             cccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence            333433334444443 34567799999999999 67777999999999999999977777  9999999887    8999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          155 AAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       155 ~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +|+.+|++++ .+++.++++||.+|.. ...+++++|+.+|+++++.+++.++++||.+|..|.|+++|+++|+.||++|
T Consensus       235 ~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          235 TAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9999999999 9999999999999552 2589999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHH
Q 019340          234 AEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       234 ~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      + .+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++++||.+|..    ..|+++|..||++|++.|++++
T Consensus       314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a  392 (452)
T 3e4b_A          314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA  392 (452)
T ss_dssp             T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH
T ss_pred             h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            9 9999999999999999999999999999999999999999999999999986    5699999999999999999999


Q ss_pred             HHHHHHHHhhcChhcHHHHHHHHHhhhcCC
Q 019340          310 DHVKNVILQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      ...+..+...++..++++++.++++|++.+
T Consensus       393 ~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~  422 (452)
T 3e4b_A          393 NDLATQLEAPLTPAQRAEGQRLVQQELAAR  422 (452)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=1.4e-31  Score=254.75  Aligned_cols=254  Identities=24%  Similarity=0.307  Sum_probs=161.2

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK  153 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~  153 (342)
                      .+++.+|..    |++.+.+.+++.+++.||.+|..|.|+.+|+++|+.+|++|++.+++.+++.||.+|..    .+|+
T Consensus        56 ~~~~~~A~~----~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMD----WFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            455555543    33333334566777777777777666667777777777777776777777777777666    4667


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          154 EAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      ++|+.+|+++++.+++.++++||.+|..|  ..+++++|+.+|+++++.+++.++++||.+|..|.|+.+|+++|+.+|+
T Consensus       132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  211 (490)
T 2xm6_A          132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYR  211 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            77777777777667777777777666642  2566666666666666666666666666666666666666666666666


Q ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcH
Q 019340          232 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       232 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~  307 (342)
                      ++++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|..    .+++++|+.||+++++.+++
T Consensus       212 ~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~  291 (490)
T 2xm6_A          212 KSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS  291 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            66666666666666666666666666666666666666666666666666666665    56666666666666666666


Q ss_pred             HHHHHHHHHHhhc---ChhcHHHHHHHHHhh
Q 019340          308 AADHVKNVILQQL---SATSRDRAMLVVDSW  335 (342)
Q Consensus       308 ~a~~~~~~~~~~~---~~~~~~~a~~~~~~~  335 (342)
                      ++...++.+....   ...+.++|...+++.
T Consensus       292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            6666555555443   114555555544443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=100.00  E-value=1e-31  Score=235.81  Aligned_cols=252  Identities=20%  Similarity=0.240  Sum_probs=230.7

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG  144 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg  144 (342)
                      +......+...+..+++.+|...+.+..+    .+++.+++.||.+|..|.|+.+++++|+.+|+++++.+++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            33445555556677899999766666555    56899999999999999999999999999999999999999999999


Q ss_pred             HHHhc----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340          145 LMYWE----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG  218 (342)
Q Consensus       145 ~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~  218 (342)
                      .+|..    .+++++|+.+|+++++.+++.++++||.+|..  +..+++++|+.+|+++++.+++.+++++|.+|..|.+
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~  161 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  161 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence            99999    99999999999999999999999999999994  2389999999999999999999999999999999888


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHH
Q 019340          219 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA  294 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A  294 (342)
                      +.+++++|+.+|+++++.+++.+++++|.+|..|.|+.+++++|+.+|+++++.+++.++++||.+|..    .+++++|
T Consensus       162 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A  241 (273)
T 1ouv_A          162 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA  241 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence            899999999999999999999999999999999988899999999999999999999999999999999    9999999


Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhhc
Q 019340          295 VVYLELATRAGETAADHVKNVILQQL  320 (342)
Q Consensus       295 ~~~~~~a~~~~~~~a~~~~~~~~~~~  320 (342)
                      +.+|++|++.++.++...+..+....
T Consensus       242 ~~~~~~a~~~~~~~a~~~l~~~~~~~  267 (273)
T 1ouv_A          242 IENFKKGCKLGAKGACDILKQLKIKV  267 (273)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999998877655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=100.00  E-value=4e-31  Score=251.64  Aligned_cols=256  Identities=18%  Similarity=0.193  Sum_probs=230.4

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCH
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKK  153 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~  153 (342)
                      .+++.+|.    .|++.+...+++.+++.||.+|..|.|+.+|+++|+.+|+++++.+++.+++.||.+|..    .+|+
T Consensus        92 ~~~~~~A~----~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           92 PQDYAQAV----IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            56777775    455555567899999999999999999999999999999999999999999999999988    6899


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          154 EAAISLYRQAAVLGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       154 ~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      ++|+.+|+++++.+++.++++||.+|..  |..+++++|+.+|+++++.+++.+++.||.+|..|.++.+|+++|+.+|+
T Consensus       168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  247 (490)
T 2xm6_A          168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFS  247 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999985  34899999999999999999999999999999999888999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHcCc
Q 019340          232 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTE-----GEMMKAVVYLELATRAGE  306 (342)
Q Consensus       232 ~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~-----~~~~~A~~~~~~a~~~~~  306 (342)
                      ++++.+++.++++||.+|..|.|+.+|+++|+.||+++++.+++.++++||.+|...     +++++|+.||+++++.++
T Consensus       248 ~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~  327 (490)
T 2xm6_A          248 QSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD  327 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999888999999999999999999999999999999887     899999999999999999


Q ss_pred             HHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhc
Q 019340          307 TAADHVKNVILQQL-SATSRDRAMLVVDSWRA  337 (342)
Q Consensus       307 ~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~  337 (342)
                      +++..+++.++... ...+.++|.+.+++...
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            99999999888765 24477888887776544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=2.2e-31  Score=225.76  Aligned_cols=196  Identities=19%  Similarity=0.127  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHc
Q 019340          122 DKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       122 ~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~  200 (342)
                      ++|+.+|+++++.+++.+++.||.+|...+|+++|+.+|+++++.+++.++++||.+|.. |...++++|+.+|+++++.
T Consensus         3 ~eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~   82 (212)
T 3rjv_A            3 TEPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA   82 (212)
T ss_dssp             -CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC
Confidence            468999999999999999999999999999999999999999999999999999999984 2344999999999999999


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCH
Q 019340          201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHG  275 (342)
Q Consensus       201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~  275 (342)
                      +++.++++||.+|..|.++.+|+++|+.+|++|++.++    +.++++||.+|..|.|+++|+++|+.||++|++. +++
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  162 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTG  162 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTT
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999998    8999999999999999999999999999999998 889


Q ss_pred             HHHHHHHHHhhhc-C-----CHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340          276 KAQLEHGLGLFTE-G-----EMMKAVVYLELATRAGETAADHVKNVIL  317 (342)
Q Consensus       276 ~a~~~Lg~~~~~~-~-----~~~~A~~~~~~a~~~~~~~a~~~~~~~~  317 (342)
                      .++++||.+|... |     |+++|+.||++|++.|++++...+..+.
T Consensus       163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l~  210 (212)
T 3rjv_A          163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            9999999999763 3     8999999999999999999998877654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=100.00  E-value=4e-30  Score=225.64  Aligned_cols=240  Identities=15%  Similarity=0.158  Sum_probs=220.7

Q ss_pred             cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCHHHH
Q 019340           97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAGQ  172 (342)
Q Consensus        97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~  172 (342)
                      +.+++.+++.+|.+|...    +++++|+.+|+++++.+++.+++.+|.+|..    .+++++|+.+|+++++.+++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKE----KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCChHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHH
Confidence            356899999999999994    8999999999999999999999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340          173 FNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS  250 (342)
Q Consensus       173 ~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~  250 (342)
                      ++||.+|..  |..+++++|+.+|+++++.+++.++++||.+|..|.++.+++++|+.+|+++++.+++.+++++|.+|.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  157 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            999999994  238999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc--Chhc
Q 019340          251 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQL--SATS  324 (342)
Q Consensus       251 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~--~~~~  324 (342)
                      .|.++.+++++|+.+|+++++.+++.++++||.+|..    .+++++|+.+|+++++.+++.+..+++.++...  ..++
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~  237 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRN  237 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccC
Confidence            9888888999999999999999999999999999999    999999999999999999999999998888762  2567


Q ss_pred             HHHHHHHHHhhhcCCC
Q 019340          325 RDRAMLVVDSWRAMPS  340 (342)
Q Consensus       325 ~~~a~~~~~~~~~~~~  340 (342)
                      .++|...+++..+..|
T Consensus       238 ~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          238 EKQAIENFKKGCKLGA  253 (273)
T ss_dssp             STTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7888887777655443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.97  E-value=1.9e-29  Score=213.78  Aligned_cols=190  Identities=18%  Similarity=0.140  Sum_probs=179.3

Q ss_pred             HHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHh
Q 019340           90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD----KKEAAISLYRQAAV  165 (342)
Q Consensus        90 ~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~----~~~~A~~~~~~a~~  165 (342)
                      .|++.+++.+++.+++.||.+|..    .+|+++|+.+|++|++.+++.++++||.+|.. +    |+++|+.+|+++++
T Consensus         7 ~~~~~aa~~g~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A            7 SQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence            466666677899999999999999    58999999999999999999999999999998 6    99999999999999


Q ss_pred             CCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CC
Q 019340          166 LGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GY  238 (342)
Q Consensus       166 ~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~  238 (342)
                      .+++.++++||.+|..  |..+|+++|+.+|+++++.++    +.++++||.+|..|.++.+|+++|+.||++|++. ++
T Consensus        82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  161 (212)
T 3rjv_A           82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT  161 (212)
T ss_dssp             TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT
T ss_pred             CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999995  348999999999999999998    9999999999999999999999999999999998 89


Q ss_pred             HHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340          239 VRAMYNTSLCYSFGEG--LPLSHRQARKWMKRAADCGHGKAQLEHGLG  284 (342)
Q Consensus       239 ~~a~~~lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  284 (342)
                      +.++++||.+|..|.|  +++|+++|+.||++|++.++..+...|+.+
T Consensus       162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l  209 (212)
T 3rjv_A          162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI  209 (212)
T ss_dssp             THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999977  999999999999999999999999998874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.96  E-value=9.4e-29  Score=233.06  Aligned_cols=235  Identities=15%  Similarity=0.064  Sum_probs=196.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCHHHH--
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD---KKEAAISLYRQAAVLGDPAGQ--  172 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~a~--  172 (342)
                      .+++.+++.||.+|..|.++.++.+++..++ +++..+++.++++||.+|...|   ++++|+.+|+++++.+++.+.  
T Consensus       138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~-~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~  216 (452)
T 3e4b_A          138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERIC-KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV  216 (452)
T ss_dssp             HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHH-HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCcccCHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence            3344455555555555444445555544433 3344466778889999998888   999999999999999888887  


Q ss_pred             HHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019340          173 FNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYS  250 (342)
Q Consensus       173 ~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~  250 (342)
                      ++||.+|..  |..+++++|+.+|++++ ++++.++++||.+|..|.+ .+|+++|+.+|++|++.+++.++++||.+|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPE-LGDVEQMMKYLDNGRAADQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999985  35689999999999999 9999999999999765544 7899999999999999999999999999999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC--hhc
Q 019340          251 FGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLS--ATS  324 (342)
Q Consensus       251 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~--~~~  324 (342)
                      .|.|+++|+++|+.||++|+ .+++.++++||.+|..    ..|+++|+.||++|++.|+++++.+++.++....  ..+
T Consensus       295 ~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d  373 (452)
T 3e4b_A          295 EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPD  373 (452)
T ss_dssp             HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCC
T ss_pred             cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999 9999999999999987    4599999999999999999999999999988764  356


Q ss_pred             HHHHHHHHHhhh
Q 019340          325 RDRAMLVVDSWR  336 (342)
Q Consensus       325 ~~~a~~~~~~~~  336 (342)
                      ..+|...++.-.
T Consensus       374 ~~~A~~~~~~A~  385 (452)
T 3e4b_A          374 PLNAYVFSQLAK  385 (452)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            677776665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=9.6e-22  Score=180.65  Aligned_cols=253  Identities=16%  Similarity=0.036  Sum_probs=120.8

Q ss_pred             HHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340           70 NKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMY  147 (342)
Q Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~  147 (342)
                      ..+...+..|++.+|...+.+..+..++  ++.+++.+|.++..    .+++++|+..|++++..  ++..++..+|.++
T Consensus        72 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           72 NLGNVYKERGQLQEAIEHYRHALRLKPD--FIDGYINLAAALVA----AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3333344556666666666555554433  45555555655555    34555555555555443  2344455555555


Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL  223 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~  223 (342)
                      ...|++++|+.+|+++++.  +++.++.++|.++.  ..+++++|+.+|+++++.  +++.++.++|.++..    .+++
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~  219 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN--AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE----ARIF  219 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCT
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCH
Confidence            5555555555555555432  44555555555555  455555555555554432  344455555555544    3344


Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      ++|+..|++++..  +++.++.++|.+|.. .   +++++|+.+|+++++.  .++.+++++|.++...|++++|+.+|+
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  295 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYE-Q---GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4444444444433  234444444444432 1   1444455555444443  234444444444444444444444444


Q ss_pred             HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      ++++..+.+..........+...++.++|...+++..+.
T Consensus       296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            444443333322223333333334444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.91  E-value=9.2e-22  Score=180.78  Aligned_cols=258  Identities=17%  Similarity=0.050  Sum_probs=223.6

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL  145 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~  145 (342)
                      ....+......|++.+|...+....+..++  ...++..+|.++..    .+++++|+.+|++++..  +++.++..+|.
T Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  177 (388)
T 1w3b_A          104 YINLAAALVAAGDMEGAVQAYVSALQYNPD--LYCVRSDLGNLLKA----LGRLEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             HHHHHHHHHHHSCSSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344444456778888998888888877654  77888999999998    58999999999999985  47899999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCC
Q 019340          146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF  221 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~  221 (342)
                      ++...|++++|+.+|+++++.  +++.++.++|.++.  ..+++++|+..|++++..  +++.+++++|.+|..    .+
T Consensus       178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g  251 (388)
T 1w3b_A          178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK--EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QG  251 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH----cC
Confidence            999999999999999999855  78999999999999  899999999999998874  589999999999988    77


Q ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340          222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY  297 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~  297 (342)
                      ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++.  .++.++.++|.++...|++++|+.+
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  327 (388)
T 1w3b_A          252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999986  578999999999965    33999999999999886  5688999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          298 LELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       298 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      |+++++..+........+...+...++.++|...+++..+..|.
T Consensus       328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            99999987665555555555566779999999999999888775

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.9e-23  Score=164.48  Aligned_cols=134  Identities=19%  Similarity=0.147  Sum_probs=99.1

Q ss_pred             HcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC--CccCHHH
Q 019340          112 KHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQA--QPANAEE  189 (342)
Q Consensus       112 ~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g--~~~~~~~  189 (342)
                      ..|.|+++|+++|+.+|+++++.+++.++  ||.+|..++.+++|+++|+++++.+++.++++||.+|..|  ..+|+++
T Consensus         2 ~~G~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            2 VGGGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             -CCSSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CCCcCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence            35678888888888888888888888877  8888888878888888888888777777777777777752  3667777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019340          190 AVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSL  247 (342)
Q Consensus       190 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~  247 (342)
                      |+.||+++++.+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++++|+.
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~  137 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence            7777777777777777777777777776667777777777777777777777666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.91  E-value=7.9e-22  Score=176.08  Aligned_cols=261  Identities=12%  Similarity=-0.004  Sum_probs=223.2

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD  142 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  142 (342)
                      +...+..+...+..|++.+|...+....+..+.  +..+++.++.++..    .+++++|+.+|+++++.  .++.+++.
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~   95 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVE----LNKANELFYLSHKLVDLYPSNPVSWFA   95 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            344566777778889999999999988887665  55667777888877    58999999999999986  47899999


Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019340          143 AGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGR  217 (342)
Q Consensus       143 lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~  217 (342)
                      +|.++...| ++++|+.+|+++++.  .++.+++.+|.++.  ..+++++|+.+|+++++.  ++..+++.+|.+|..  
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--  171 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA--VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL--  171 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH--
Confidence            999999999 999999999999876  67899999999999  889999999999999874  568899999999988  


Q ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q 019340          218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----------GHGKAQLEHGLG  284 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~  284 (342)
                        .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|++++..           ..+.+++++|.+
T Consensus       172 --~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          172 --TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             --TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             --HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence              77999999999999986  578899999999965    33999999999999873           336789999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          285 LFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      |...|++++|+.+|+++++..+.+......+...+...++.++|...+++..+..|.
T Consensus       246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            999999999999999999987665555555555556678999999999999888775

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=1.1e-22  Score=160.17  Aligned_cols=129  Identities=20%  Similarity=0.148  Sum_probs=117.2

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340          151 DKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWY  230 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  230 (342)
                      +|+++|+.+|+++++.+++.++  ||.+|.  .....++|+.||+++++.+++.++++||.+|..|.|+.+|+++|+.||
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~--~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC--LSLVSN--SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH--HHHHTC--TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh--HHHHHH--cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            5889999999999999999998  999988  556788899999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 019340          231 LRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL  283 (342)
Q Consensus       231 ~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~  283 (342)
                      ++|++.+++.++++||.+|..|.|+++|+++|+.||++|++.+++.++.+|+.
T Consensus        85 ~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~l~~  137 (138)
T 1klx_A           85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN  137 (138)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHC--
T ss_pred             HHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999988875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=1.1e-21  Score=166.48  Aligned_cols=191  Identities=14%  Similarity=0.013  Sum_probs=157.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      +++.+++.+|.++..    .+++++|+..|+++++.  +++.+++.+|.++...|++++|+.+|+++++.  +++.++++
T Consensus         3 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYA----LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            467889999999998    58999999999999987  58999999999999999999999999999854  78999999


Q ss_pred             HHHHHHcCCc-----------cCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHH
Q 019340          175 LGISYLQAQP-----------ANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVR  240 (342)
Q Consensus       175 Lg~~~~~g~~-----------~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~  240 (342)
                      +|.++.  ..           +++++|+..|+++++  ++++.+++++|.+|..    .+++++|+.+|+++++. +++.
T Consensus        79 lg~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~  152 (217)
T 2pl2_A           79 LSEAYV--ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPE  152 (217)
T ss_dssp             HHHHHH--HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHH--HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchH
Confidence            999999  78           999999999999887  5689999999999988    78999999999999876 6788


Q ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      +++++|.+|..    .+++++|+.+|+++++.  +++.+++++|.++...|++++|+.+|+++-.
T Consensus       153 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          153 IRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999965    33999999999999876  6789999999999999999999999988753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.88  E-value=4.2e-21  Score=174.77  Aligned_cols=249  Identities=11%  Similarity=-0.002  Sum_probs=203.5

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      ..+..+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGITQAE----NENEQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3667777788899999999999998887655  79999999999999    58999999999999986  5789999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCC--CHH----------HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C--CHHHHHH
Q 019340          145 LMYWEMDKKEAAISLYRQAAVLG--DPA----------GQFNLGISYLQAQPANAEEAVKLLYQASIA--G--HVRAQYQ  208 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~~--~~~----------a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~~~a~~~  208 (342)
                      .+|...|++++|+.+|+++++..  ++.          ....+|.++.  ..+++++|+.+|+++++.  .  ++.++++
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV--DSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            99999999999999999998753  222          3334588888  899999999999999884  4  7899999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLG  284 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  284 (342)
                      +|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|.. .   +++++|+.+|+++++.  +++.+++++|.+
T Consensus       219 l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          219 LGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-G---DRSEEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             HHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            9999987    77999999999999886  578999999999976 3   3999999999999886  568999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCc--------------HHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340          285 LFTEGEMMKAVVYLELATRAGE--------------TAADHVKNVILQQLSATSRDRAMLVVD  333 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~--------------~~a~~~~~~~~~~~~~~~~~~a~~~~~  333 (342)
                      |...|++++|+.+|+++++..+              ......++.+...+  ++.+.+..+.+
T Consensus       291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~  351 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM--DQPELFQAANL  351 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH--TCHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc--CcHHHHHHHHH
Confidence            9999999999999999998752              24445555555444  55555555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=7.3e-20  Score=164.90  Aligned_cols=251  Identities=12%  Similarity=-0.009  Sum_probs=138.1

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC-----HHHHHHH------
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----TLAMVDA------  143 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----~~a~~~l------  143 (342)
                      .+..|++.+|...+....+..+.  +..+++.+|.+|..    .+++++|+.+|+++++...     +.++..+      
T Consensus        47 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (359)
T 3ieg_A           47 FLAMGKSKAALPDLTKVIALKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM  120 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence            33444455554444444444322  44445555555544    3455555555555554322     2222223      


Q ss_pred             ------HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          144 ------GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       144 ------g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                            |.++...|++++|+.+|+++++.  +++.++..+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.+|
T Consensus       121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI--KEGEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  34455555555555555554432  44555555555555  555555666666555543  3555566666665


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH------------HHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH--
Q 019340          214 HRGRGVDFNLQEAARWYLRAAEG--GYVRAMY------------NTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG--  275 (342)
Q Consensus       214 ~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~------------~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~--  275 (342)
                      ..    .+++++|+.+|+++++.  .+..++.            .+|.++..    .+++++|+.+|++++...  ++  
T Consensus       199 ~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~  270 (359)
T 3ieg_A          199 YQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEPSVAEY  270 (359)
T ss_dssp             HH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSSHHH
T ss_pred             HH----cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchHH
Confidence            54    44566666666666553  2333222            22444533    226677777777766642  22  


Q ss_pred             --HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          276 --KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       276 --~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                        .++..+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|.
T Consensus       271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence              335567888888888888888888888776544444444444445567888888888887777665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=3.9e-20  Score=165.08  Aligned_cols=231  Identities=15%  Similarity=0.116  Sum_probs=201.4

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRK-NLDKALDSFLKGAARG--STLAMVDAGLMY  147 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~-~~~~A~~~~~~A~~~~--~~~a~~~lg~~~  147 (342)
                      .+...+..+++.+|...+....+..+.  ++.+++.+|.++..    .+ ++++|+.+|++++...  ++.+++.+|.++
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  135 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGCYYLM----VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF  135 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHHHHHH----SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            344456778999999988888887554  78899999999998    47 9999999999999864  788999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL  223 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~  223 (342)
                      ...|++++|+.+|+++++.  ++..+++.+|.+|.  ..+++++|+.+|+++++.  .++.+++.+|.+|..    .+++
T Consensus       136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~~~~  209 (330)
T 3hym_B          136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG--LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ----NGEW  209 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----TTCH
T ss_pred             HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cccH
Confidence            9999999999999999865  66899999999999  889999999999999875  589999999999998    7899


Q ss_pred             HHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340          224 QEAARWYLRAAE-----------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE  290 (342)
Q Consensus       224 ~~A~~~~~~A~~-----------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~  290 (342)
                      ++|+.+|+++++           ...+.+++++|.+|.. .   +++++|+.+|+++++.  .+..++.++|.+|...|+
T Consensus       210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~---g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-L---KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-h---cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            999999999987           3456799999999965 3   3999999999999886  568899999999999999


Q ss_pred             HHHHHHHHHHHHHcCc--HHHHHHHHHHH
Q 019340          291 MMKAVVYLELATRAGE--TAADHVKNVIL  317 (342)
Q Consensus       291 ~~~A~~~~~~a~~~~~--~~a~~~~~~~~  317 (342)
                      +++|..+|+++++..+  ..+...++.++
T Consensus       286 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          286 FENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            9999999999998864  55555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=2.1e-20  Score=158.43  Aligned_cols=192  Identities=14%  Similarity=0.082  Sum_probs=159.0

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA  210 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg  210 (342)
                      .++.+++.+|.++...|++++|+..|+++++.  +++.+++++|.++.  ..+++++|+.+|+++++  ++++.+++++|
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL--KLGLVNPALENGKTLVARTPRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            46678999999999999999999999999865  78999999999999  89999999999999887  56899999999


Q ss_pred             HHHhcCCCCC-----------CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHH
Q 019340          211 LCLHRGRGVD-----------FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGK  276 (342)
Q Consensus       211 ~~~~~g~~~~-----------~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~  276 (342)
                      .++..    .           +++++|+..|+++++.  +++.+++++|.+|.. .|   ++++|+.+|+++++. +++.
T Consensus        81 ~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~~~~~~~  152 (217)
T 2pl2_A           81 EAYVA----LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-LG---ERDKAEASLKQALALEDTPE  152 (217)
T ss_dssp             HHHHH----HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHH----hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC---ChHHHHHHHHHHHhcccchH
Confidence            99987    6           7899999999999885  689999999999965 33   999999999999876 6789


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      +++++|.+|...|++++|+.+|+++++..|.+..............++.++|...+++.-
T Consensus       153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999999999987666666666677788899999988777653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.86  E-value=7e-20  Score=163.18  Aligned_cols=253  Identities=13%  Similarity=-0.026  Sum_probs=209.6

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL  145 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~  145 (342)
                      .+..+...+..+++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  .++.++..+|.
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAE----NEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            456677778899999999999888887654  88999999999998    58999999999999986  48899999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH--------------HH-HHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340          146 MYWEMDKKEAAISLYRQAAVL--GDPAGQFNL--------------GI-SYLQAQPANAEEAVKLLYQASIA--GHVRAQ  206 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L--------------g~-~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~  206 (342)
                      +|...|++++|+.+|+++++.  .+...+..+              +. ++.  ..+++++|+.+|+++++.  .++.++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA--APNEYRECRTLLHAALEMNPNDAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTT--SHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH--HcccHHHHHHHHHHHHhhCCCCHHHH
Confidence            999999999999999999876  444444444              44 455  788999999999999875  579999


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG  282 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  282 (342)
                      +.+|.+|..    .+++++|+.+|+++++.  .++.++..+|.+|.. .|   ++++|+.+|++++..  .+..+++.+|
T Consensus       176 ~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          176 ASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GN---RPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999987    77999999999999876  578999999999976 33   999999999999886  5688999999


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcCcH------------HHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          283 LGLFTEGEMMKAVVYLELATRAGET------------AADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~~~------------~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      .+|...|++++|..+|+++++..+.            ...........+...++.++|....++..
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999999999999999987655            44444444444455688888888776543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=2.2e-19  Score=167.64  Aligned_cols=254  Identities=11%  Similarity=-0.030  Sum_probs=133.1

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~  149 (342)
                      +...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|.+|..
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            33344455555555555544444322  45555555555555    34555555555555543  244555555555555


Q ss_pred             CCCHHHHHHHHHHHHhC---------------------------------------------------CCHHHHHHHHHH
Q 019340          150 MDKKEAAISLYRQAAVL---------------------------------------------------GDPAGQFNLGIS  178 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~---------------------------------------------------~~~~a~~~Lg~~  178 (342)
                      .|++++|+.+|+++++.                                                   .++.+++.+|.+
T Consensus       107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  186 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC  186 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            55555555555555443                                                   344444455555


Q ss_pred             HHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH---------
Q 019340          179 YLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNT---------  245 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~l---------  245 (342)
                      |.  ..+++++|+.+|+++++  +.++.+++.+|.+|..    .+++++|+.+|++++..  ++...+..+         
T Consensus       187 ~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  260 (450)
T 2y4t_A          187 FI--KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL  260 (450)
T ss_dssp             HH--HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HH--HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            54  44555555555555443  2445555555555554    44555555555555543  234443333         


Q ss_pred             ---HHHHHcCCCCcccHHHHHHHHHHHHHcC--C----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340          246 ---SLCYSFGEGLPLSHRQARKWMKRAADCG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI  316 (342)
Q Consensus       246 ---g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~  316 (342)
                         |.++..    .+++++|+.+|+++++..  +    ...+..+|.++...|++++|+.+|+++++..+.+........
T Consensus       261 ~~~~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~  336 (450)
T 2y4t_A          261 IESAEELIR----DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA  336 (450)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence               444433    225666666666665542  2    235566666666667777777777766665543333333333


Q ss_pred             HhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          317 LQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       317 ~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ..+...++.++|...+++..+..|.
T Consensus       337 ~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          337 EAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            3334456666677766666666554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=2.3e-19  Score=167.56  Aligned_cols=236  Identities=16%  Similarity=0.083  Sum_probs=183.6

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----------
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----------  134 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----------  134 (342)
                      ......+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.           
T Consensus        61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~  134 (450)
T 2y4t_A           61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQRGHLLLK----QGKLDEAEDDFKKVLKSNPSENEEKEAQ  134 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence            33444444555667777777777666665443  56667777777666    35666666666655443           


Q ss_pred             ----------------------------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340          135 ----------------------------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ  172 (342)
Q Consensus       135 ----------------------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  172 (342)
                                                              .++.+++.+|.+|...|++++|+.+|+++++.  +++.++
T Consensus       135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  214 (450)
T 2y4t_A          135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF  214 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence                                                    24566778888888899999999999998754  789999


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHH------------HHHHhcCCCCCCCHHHHHHHHHHHHHCC-
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQL------------ALCLHRGRGVDFNLQEAARWYLRAAEGG-  237 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l------------g~~~~~g~~~~~~~~~A~~~~~~A~~~~-  237 (342)
                      +.+|.+|.  ..+++++|+.+|++++..  +++..+..+            |.++..    .+++++|+.+|+++++.. 
T Consensus       215 ~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~l~~~p  288 (450)
T 2y4t_A          215 YKISTLYY--QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR----DGRYTDATSKYESVMKTEP  288 (450)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence            99999999  889999999999999874  577777666            888888    789999999999998863 


Q ss_pred             -C----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HH
Q 019340          238 -Y----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA  308 (342)
Q Consensus       238 -~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~  308 (342)
                       +    ...+..+|.++.. .|   ++++|+.++++++..  +++.+++.+|.++...|++++|+.+|+++++..+  ..
T Consensus       289 ~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  364 (450)
T 2y4t_A          289 SIAEYTVRSKERICHCFSK-DE---KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ  364 (450)
T ss_dssp             SSHHHHHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred             cchHHHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence             3    3478899999965 33   999999999999875  5689999999999999999999999999999865  44


Q ss_pred             HHHHHHHHH
Q 019340          309 ADHVKNVIL  317 (342)
Q Consensus       309 a~~~~~~~~  317 (342)
                      +...++.+.
T Consensus       365 ~~~~l~~~~  373 (450)
T 2y4t_A          365 IREGLEKAQ  373 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            554544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.86  E-value=1.6e-20  Score=172.66  Aligned_cols=228  Identities=6%  Similarity=-0.074  Sum_probs=183.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhC--CCHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK-KEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      ++.+++.+|.++..    .+++++|+..|++++..  ++..+++++|.++...|+ +++|+.+|++++..  +++.++++
T Consensus        96 ~~~a~~~lg~~~~~----~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           96 FRDVYDYFRAVLQR----DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHHHHHHH----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            46778888998888    48899999999999886  488999999999999996 99999999998865  78999999


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      +|.++.  ..+++++|+.+|+++++.  .++.+++++|.++..    .+++++|+.+|+++++.  .+..+++++|.+|.
T Consensus       172 ~g~~~~--~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          172 RRVLVE--WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHH--HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHH--HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999  888999999999998874  589999999999987    66788999999999886  57899999999997


Q ss_pred             cCCCCcccHHHH-----HHHHHHHHHc--CCHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHcC--cHHHHHHHHHHHhh
Q 019340          251 FGEGLPLSHRQA-----RKWMKRAADC--GHGKAQLEHGLGLFTEG--EMMKAVVYLELATRAG--ETAADHVKNVILQQ  319 (342)
Q Consensus       251 ~g~g~~~~~~~A-----~~~~~~a~~~--~~~~a~~~Lg~~~~~~~--~~~~A~~~~~~a~~~~--~~~a~~~~~~~~~~  319 (342)
                      .-.|   ..++|     +.+|++++..  ++..+++++|.++...|  ++++|+.+++++ +.+  ...+...++.++..
T Consensus       246 ~l~~---~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~  321 (382)
T 2h6f_A          246 NTTG---YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED  321 (382)
T ss_dssp             HTTC---SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred             HhcC---cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence            6333   32444     6899999876  66889999999998887  689999999887 554  45555566655554


Q ss_pred             cC------hh-cHHHHHHHHHhh-hcCCCC
Q 019340          320 LS------AT-SRDRAMLVVDSW-RAMPSL  341 (342)
Q Consensus       320 ~~------~~-~~~~a~~~~~~~-~~~~~~  341 (342)
                      +.      .+ ..++|+.+++++ .+..|.
T Consensus       322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          322 MLENQCDNKEDILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence            41      12 358888888888 676664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=1.2e-20  Score=171.74  Aligned_cols=227  Identities=13%  Similarity=0.025  Sum_probs=187.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++..++.+|.++..    .+++++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|+++++.  .++.+++.+
T Consensus        64 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  139 (365)
T 4eqf_A           64 DWPGAFEEGLKRLK----EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL  139 (365)
T ss_dssp             TCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            34568999999998    68999999999999985  58999999999999999999999999999865  789999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHcC--CH----------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--C--CH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIAG--HV----------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--G--YV  239 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~~--~~----------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~--~~  239 (342)
                      |.+|.  ..+++++|+.+|+++++..  ++          ..+..+|.++..    .+++++|+.+|++++..  .  ++
T Consensus       140 ~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  213 (365)
T 4eqf_A          140 AVSYT--NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD----SSVLEGVKELYLEAAHQNGDMIDP  213 (365)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHCHHHHCC-------------------C----CHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred             HHHHH--ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhCcCccCH
Confidence            99999  8999999999999998753  22          233455888876    77999999999999986  3  78


Q ss_pred             HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340          240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVIL  317 (342)
Q Consensus       240 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~  317 (342)
                      .+++++|.+|..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++|+.+|+++++..+.++.....+..
T Consensus       214 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          214 DLQTGLGVLFHL----SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            999999999965    34999999999999886  568999999999999999999999999999987655555555555


Q ss_pred             hhcChhcHHHHHHHHHhhhcCCC
Q 019340          318 QQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       318 ~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      .+...++.++|...+++..+..|
T Consensus       290 ~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          290 SCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc
Confidence            55666889999998888765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.86  E-value=3.5e-20  Score=161.33  Aligned_cols=230  Identities=10%  Similarity=0.006  Sum_probs=195.2

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----CHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----STLAMV  141 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~  141 (342)
                      ..+..+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++..     ...+++
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   78 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN--SPYIYNRRAVCYYE----LAKYDLAQKDIETYFSKVNATKAKSADFE   78 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC--CSTTHHHHHHHHHH----TTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence            3456677778999999999999888877655  66788999999998    589999999999999842     255689


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH-HHHhcC
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA-LCLHRG  216 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg-~~~~~g  216 (342)
                      .+|.+|...|++++|+.+|+++++.  .++.++..+|.+|.  ..+++++|+.+|+++++  +.++.+++++| .+|..+
T Consensus        79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  156 (272)
T 3u4t_A           79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY--NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK  156 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH--HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH--HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865  78899999999999  89999999999999886  46899999999 777753


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC------HHHHHHHHHH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH------GKAQLEHGLG  284 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~------~~a~~~Lg~~  284 (342)
                           ++++|+.+|+++++.  .+..+++.+|.++..- |...++++|+.+|+++++.    .+      ..++..||.+
T Consensus       157 -----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  230 (272)
T 3u4t_A          157 -----EYVKADSSFVKVLELKPNIYIGYLWRARANAAQ-DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY  230 (272)
T ss_dssp             -----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence                 899999999999986  5788999999998642 2122388899999999875    22      2678899999


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          285 LFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      |...|++++|+.+|+++++..|.+..
T Consensus       231 ~~~~~~~~~A~~~~~~al~~~p~~~~  256 (272)
T 3u4t_A          231 YTINRDKVKADAAWKNILALDPTNKK  256 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCccHHH
Confidence            99999999999999999998654443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=7.7e-20  Score=166.08  Aligned_cols=248  Identities=12%  Similarity=0.001  Sum_probs=206.1

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      ..+..+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~  139 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALA  139 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----CcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3456666778899999999988888876544  88999999999999    58999999999999986  4899999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHH----------------HHHHHHHcCCccCHHHHHHHHHHHHHc--C--C
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQF----------------NLGISYLQAQPANAEEAVKLLYQASIA--G--H  202 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~----------------~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~  202 (342)
                      .+|...|++++|+.+|++++..  .+..++.                .+|.++   ..+++++|+.+|+++++.  .  +
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~~p~~~~  216 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL---SDSLFLEVKELFLAAVRLDPTSID  216 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH---HHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh---hcccHHHHHHHHHHHHHhCcCccc
Confidence            9999999999999999999976  3333332                455555   468999999999999874  4  6


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHH
Q 019340          203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQ  278 (342)
Q Consensus       203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  278 (342)
                      +.+++.+|.+|..    .+++++|+.+|++++..  .++.+++++|.+|.. .|   ++++|+.+|++++..  +++.++
T Consensus       217 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~  288 (368)
T 1fch_A          217 PDVQCGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN---QSEEAVAAYRRALELQPGYIRSR  288 (368)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCcHHHH
Confidence            8999999999998    77999999999999875  578999999999965 33   999999999999886  568899


Q ss_pred             HHHHHHhhhcCCHHHHHHHHHHHHHcCc-------------HHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340          279 LEHGLGLFTEGEMMKAVVYLELATRAGE-------------TAADHVKNVILQQLSATSRDRAMLVVD  333 (342)
Q Consensus       279 ~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-------------~~a~~~~~~~~~~~~~~~~~~a~~~~~  333 (342)
                      +++|.+|...|++++|+.+|+++++..+             ..+...++.++..+  ++.++|..+.+
T Consensus       289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~  354 (368)
T 1fch_A          289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML--GQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH--TCGGGHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh--CChHhHHHhHH
Confidence            9999999999999999999999998754             45566666555544  66666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.85  E-value=3.3e-19  Score=172.51  Aligned_cols=260  Identities=10%  Similarity=-0.025  Sum_probs=215.8

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA  143 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l  143 (342)
                      ......+...+..|++.+|...+....+..+.  +..++..++.+|..    .+++++|+..|++++..  +++.+++.+
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l  379 (597)
T 2xpi_A          306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY--NLDVYPLHLASLHE----SGEKNKLYLISNDLVDRHPEKAVTWLAV  379 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CCTTHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence            33444555566778888888888777766554  55667777888877    57888999999888764  478899999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC
Q 019340          144 GLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGV  219 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~  219 (342)
                      |.+|...|++++|+.+|+++++.  .++.++..+|.+|.  ..+++++|+.+|+++++.  .++.+++.+|.+|..    
T Consensus       380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----  453 (597)
T 2xpi_A          380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA--IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ----  453 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH----
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----
Confidence            99999999999999999998764  77899999999999  889999999999998875  478899999999987    


Q ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CC---HHHHHHHHHHhhhc
Q 019340          220 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GH---GKAQLEHGLGLFTE  288 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~---~~a~~~Lg~~~~~~  288 (342)
                      .+++++|+.+|+++++.  .++.++..+|.+|.. .   +++++|+.+|+++++.      .+   ..++..+|.+|...
T Consensus       454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALFQYDPLLLNELGVVAFN-K---SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-h---CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            77999999999999875  578899999999975 2   3999999999999875      22   67889999999999


Q ss_pred             CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          289 GEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       289 ~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      |++++|..+|+++++.++.+......+...+...++.++|...+++..+..|.
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999987655555555555556679999999999999887775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.85  E-value=6.9e-20  Score=150.47  Aligned_cols=169  Identities=21%  Similarity=0.173  Sum_probs=133.0

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      ++.+++++|.+|...|++++|+.+|+++++.  +++.+++.+|.+|.  ..+++++|+.++.+++..  .++.++..+|.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM--DIGLPNDAIESLKKFVVLDTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            4667778888888888888888888887754  67788888888887  777888888888887663  46777888888


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT  287 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~  287 (342)
                      ++..    .+++++|...+.+++..  .+..++..+|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|..
T Consensus        82 ~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           82 ANFM----IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHH----cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            8776    66788888888887765  567788888888855    23888888888888875  568888999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340          288 EGEMMKAVVYLELATRAGETAADHVKN  314 (342)
Q Consensus       288 ~~~~~~A~~~~~~a~~~~~~~a~~~~~  314 (342)
                      .|++++|+.+|++|++.+|.++.++++
T Consensus       154 ~g~~~~A~~~~~~al~~~p~~a~~~la  180 (184)
T 3vtx_A          154 KGLRDEAVKYFKKALEKEEKKAKYELA  180 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTHHHHHHCSC
T ss_pred             CCCHHHHHHHHHHHHhCCccCHHHHHH
Confidence            999999999999999998887765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.85  E-value=6.5e-20  Score=159.61  Aligned_cols=225  Identities=13%  Similarity=0.030  Sum_probs=192.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----DPAGQ  172 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~  172 (342)
                      ++..++.+|.++..    .+++++|+.+|+++++..  ++.+++.+|.+|...|++++|+.+|+++++..     ...++
T Consensus         2 n~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   77 (272)
T 3u4t_A            2 NDDVEFRYADFLFK----NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF   77 (272)
T ss_dssp             ---CHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred             cHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence            34567889999998    589999999999999974  77799999999999999999999999999842     25569


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH-H
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTS-L  247 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg-~  247 (342)
                      +.+|.+|.  ..+++++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.+|+++++.  .++.+++++| .
T Consensus        78 ~~lg~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  151 (272)
T 3u4t_A           78 EYYGKILM--KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRPTTTDPKVFYELGQA  151 (272)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHH--HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence            99999999  899999999999999884  688999999999998    78999999999999876  5889999999 8


Q ss_pred             HHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHcC---cH-------HHHHH
Q 019340          248 CYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE---MMKAVVYLELATRAG---ET-------AADHV  312 (342)
Q Consensus       248 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~---~~~A~~~~~~a~~~~---~~-------~a~~~  312 (342)
                      +|..+     ++++|+.+|+++++.  .+..+++.+|.++...++   +++|+.+|+++++..   +.       .+...
T Consensus       152 ~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  226 (272)
T 3u4t_A          152 YYYNK-----EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY  226 (272)
T ss_dssp             HHHTT-----CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            88643     999999999999986  558899999999999998   899999999998863   22       34444


Q ss_pred             HHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          313 KNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       313 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ++.+.  ...++.++|...+++..+..|.
T Consensus       227 l~~~~--~~~~~~~~A~~~~~~al~~~p~  253 (272)
T 3u4t_A          227 IAYYY--TINRDKVKADAAWKNILALDPT  253 (272)
T ss_dssp             HHHHH--HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHH--HHcCCHHHHHHHHHHHHhcCcc
Confidence            44444  4569999999999999888775

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.5e-19  Score=169.73  Aligned_cols=259  Identities=10%  Similarity=-0.012  Sum_probs=180.5

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      .....+...+..|++.+|...+...++..   +++.+++.+|.+|..    .+++++|+..|+++++.  +++.+++.+|
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVS----VGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHH----HhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            34555666677788888887777777664   367888888888887    57888888888888775  4777888888


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCCC--------------------------------------------------------
Q 019340          145 LMYWEMDKKEAAISLYRQAAVLGD--------------------------------------------------------  168 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~~~--------------------------------------------------------  168 (342)
                      .+|...|++++|+..|++++..+.                                                        
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            888888888888888888765542                                                        


Q ss_pred             -------------------------HHHHHHHHHHHHc-CCccCHHHHHHHHHHHHH----------------cCCHHHH
Q 019340          169 -------------------------PAGQFNLGISYLQ-AQPANAEEAVKLLYQASI----------------AGHVRAQ  206 (342)
Q Consensus       169 -------------------------~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~----------------~~~~~a~  206 (342)
                                               +.+++.+|.++.. ...+++++|+.+|+++++                +.++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence                                     5666777776662 226778888888888777                3456777


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEGGY-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL  283 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  283 (342)
                      +.+|.++..    .+++++|+.+|+++++... ..+++.+|.+|.. .|   ++++|+.+|++++..  .+..++..+|.
T Consensus       241 ~~~~~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~  312 (514)
T 2gw1_A          241 EHTGIFKFL----KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-RN---DSTEYYNYFDKALKLDSNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHHHHHHH----SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT-SS---CCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred             HHHHHHHHH----CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence            788888776    6678888888887776421 6677777777754 22   667777777777664  34566667777


Q ss_pred             HhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          284 GLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       284 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +|...|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  369 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP  369 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            777777777777777777766554444444445555566666667666666554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=3.3e-20  Score=168.49  Aligned_cols=248  Identities=14%  Similarity=0.013  Sum_probs=197.0

Q ss_pred             ChhHHhhHH-HHHHHHHHhCcCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340           78 LPQLRAASL-VCKSWNDALRPLR--EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK  152 (342)
Q Consensus        78 ~~~~~~a~~-~~~~~~~~~~~~~--~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~  152 (342)
                      .+++.+|.. .+...++..+..+  ++..++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|.+|...|+
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            355666654 3333333333322  35678899999999    58999999999999997  488999999999999999


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHH----------------HHHHH
Q 019340          153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQY----------------QLALC  212 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~----------------~lg~~  212 (342)
                      +++|+.+|+++++.  +++.+++.+|.+|.  ..+++++|+.+|++++...  +..++.                .+|.+
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFT--NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            99999999999865  68999999999999  8999999999999998853  333332                56777


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEG--G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF  286 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~--~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  286 (342)
                      + .    .+++++|+.+|+++++.  .  ++.+++.+|.+|.. .   +++++|+.+|++++..  .++.+++++|.++.
T Consensus       192 ~-~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~-~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  262 (368)
T 1fch_A          192 L-S----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-S---GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA  262 (368)
T ss_dssp             H-H----HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             h-h----cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            7 3    56899999999999886  3  57899999999965 3   3999999999999886  56889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          287 TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       287 ~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ..|++++|+.+|+++++..+.+..........+...++.++|...+++..+..|
T Consensus       263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999998766555555555666667999999998888765443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.84  E-value=2.2e-19  Score=164.95  Aligned_cols=227  Identities=6%  Similarity=-0.157  Sum_probs=192.5

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCC-HHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN-LDKALDSFLKGAAR--GSTLAMVDAGLMY  147 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~-~~~A~~~~~~A~~~--~~~~a~~~lg~~~  147 (342)
                      ........+++.+|...+.+.++..+.  ++.+++.+|.++..    .++ +++|+.+|++++..  ++..+++++|.++
T Consensus       103 lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~----~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A          103 FRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKS----LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHH----cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            333445678899999999999988765  89999999999998    465 99999999999996  4899999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc-CCCCCCC
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR-GRGVDFN  222 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~-g~~~~~~  222 (342)
                      ...|++++|+..|+++++.  +++.+++++|.++.  ..+++++|+.+|+++++.  +++.+++++|.++.. ++    .
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~--~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~----~  250 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ--EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG----Y  250 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----S
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----c
Confidence            9999999999999999865  88999999999999  889999999999999885  689999999999987 32    2


Q ss_pred             HHHH-----HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC----
Q 019340          223 LQEA-----ARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG----  289 (342)
Q Consensus       223 ~~~A-----~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~----  289 (342)
                      .++|     +.+|++|+..  ++..+++++|.++.. .| ..++++|+.+++++ +.  ++..++..||.+|...+    
T Consensus       251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~g-~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RG-LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TC-GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-cC-ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccc
Confidence            2445     6999999876  689999999999964 33 24789999999887 44  66889999999998874    


Q ss_pred             ----C-HHHHHHHHHHH-HHcCcHHHHHH
Q 019340          290 ----E-MMKAVVYLELA-TRAGETAADHV  312 (342)
Q Consensus       290 ----~-~~~A~~~~~~a-~~~~~~~a~~~  312 (342)
                          + +++|+.+|+++ ++.++....+.
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w  356 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKEKDTIRKEYW  356 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence                3 59999999999 88887655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.4e-18  Score=149.41  Aligned_cols=215  Identities=12%  Similarity=0.065  Sum_probs=176.3

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C-------HH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S-------TL  138 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-------~~  138 (342)
                      ....+...+..|++.+|...+....+..   .++.+++.+|.+|..    .+++++|+.+|+++++..  +       +.
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYE----KGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            4455556677888888888888877765   477888888988888    588999999999988753  2       67


Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcC
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRG  216 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g  216 (342)
                      +++.+|.+|...|++++|+.+|++++.....      +.++.  ..+++++|+.++++++...  ++.+++.+|.++.. 
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ADILT--KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-  151 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHH--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCch------hHHHH--HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-
Confidence            8888999998899999999999998876332      33444  5567788888888887764  67889999999987 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~  292 (342)
                         .+++++|+.+|+++++.  .++.+++++|.+|.. .   +++++|+.+|+++++.  .++.+++.+|.+|...|+++
T Consensus       152 ---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          152 ---KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-L---MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             ---hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h---CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence               77999999999999875  578899999999965 2   3999999999999876  56889999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 019340          293 KAVVYLELATRAG  305 (342)
Q Consensus       293 ~A~~~~~~a~~~~  305 (342)
                      +|+.+|+++++..
T Consensus       225 ~A~~~~~~a~~~~  237 (258)
T 3uq3_A          225 SALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999876

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.83  E-value=1.3e-19  Score=160.69  Aligned_cols=251  Identities=10%  Similarity=0.009  Sum_probs=165.4

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD  151 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~  151 (342)
                      +...|..|+++.+...+..+....++ ....+.+.++.+|..    .++++.|+..++.. ...+..++..++..+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~----~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLA----QRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHH----TTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHH----CCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCC
Confidence            44456677777776444333222111 012455667777777    46788888776552 2224456667777887778


Q ss_pred             CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340          152 KKEAAISLYRQAAV----LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA  227 (342)
Q Consensus       152 ~~~~A~~~~~~a~~----~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~  227 (342)
                      +.++|++.+++.+.    ++++.+++.+|.++.  ..|++++|+.+|++   +++++++..+|.+|..    .+++++|+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~--~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~----~g~~~~A~  150 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYF--YDQNPDAALRTLHQ---GDSLECMAMTVQILLK----LDRLDLAR  150 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH--HTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH----TTCHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH----CCCHHHHH
Confidence            88888888888764    357778888888888  77888888888887   6778888888888876    66788888


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          228 RWYLRAAEGGYVRAMYNTSLCYS---FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       228 ~~~~~A~~~~~~~a~~~lg~~y~---~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      ..|+++++........+++..+.   .+.|   ++++|+.+|+++++.  +++.+++++|.++...|++++|..+|++++
T Consensus       151 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~---~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  227 (291)
T 3mkr_A          151 KELKKMQDQDEDATLTQLATAWVSLAAGGE---KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL  227 (291)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCcHHHHHHHHHHHHHhCch---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888876543223333332211   2233   788888888888775  557777888888888888888888888888


Q ss_pred             HcCc--HHHHHHHHHHHhhcChhcHH-HHHHHHHhhhcCCCCC
Q 019340          303 RAGE--TAADHVKNVILQQLSATSRD-RAMLVVDSWRAMPSLH  342 (342)
Q Consensus       303 ~~~~--~~a~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~  342 (342)
                      +..+  +++..+++.+...  .++.+ .+.++.+++.+.+|.|
T Consensus       228 ~~~p~~~~~l~~l~~~~~~--~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          228 DKDSGHPETLINLVVLSQH--LGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCCCC
Confidence            7754  4445555544443  33443 4566777777776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=7.3e-19  Score=151.14  Aligned_cols=219  Identities=12%  Similarity=0.021  Sum_probs=185.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC-------H
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P  169 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~  169 (342)
                      .+.+++.+|.++..    .+++++|+.+|+++++. .++.+++.+|.+|...|++++|+.+|+++++.  .+       +
T Consensus         4 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   79 (258)
T 3uq3_A            4 MADKEKAEGNKFYK----ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS   79 (258)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence            46788999999999    58999999999999876 57889999999999999999999999999865  22       7


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTS  246 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg  246 (342)
                      .+++.+|.+|.  ..+++++|+.+|+++++.. ....+..           .+++++|+..+++++...  ++.+++.+|
T Consensus        80 ~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  146 (258)
T 3uq3_A           80 KSFARIGNAYH--KLGDLKKTIEYYQKSLTEHRTADILTK-----------LRNAEKELKKAEAEAYVNPEKAEEARLEG  146 (258)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HcccHHHHHHHHHHHHhcCchhHHHHH-----------HhHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence            89999999999  8999999999999999864 4443333           346789999999999874  677899999


Q ss_pred             HHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhc
Q 019340          247 LCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATS  324 (342)
Q Consensus       247 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~  324 (342)
                      .+|...    +++++|+.+|++++..  .++.+++++|.+|...|++++|+.+|+++++..+.+..........+...++
T Consensus       147 ~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          147 KEYFTK----SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHh----cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            999653    3999999999999886  5688999999999999999999999999999876555555555555566689


Q ss_pred             HHHHHHHHHhhhcCC
Q 019340          325 RDRAMLVVDSWRAMP  339 (342)
Q Consensus       325 ~~~a~~~~~~~~~~~  339 (342)
                      .++|...+++..+..
T Consensus       223 ~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          223 YASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999888876654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.83  E-value=5.5e-19  Score=145.05  Aligned_cols=171  Identities=20%  Similarity=0.283  Sum_probs=155.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..++.||.+|..    .|++++|+.+|+++++.  +++.+++.+|.+|...|++++|+..++++...  .++.++..+
T Consensus         4 ~~~iy~~lG~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRT----KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            57788999999999    69999999999999986  58999999999999999999999999999755  789999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF  251 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~  251 (342)
                      |.++.  ..+++++|+.++.+++..  .++.++..+|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|..
T Consensus        80 ~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           80 GSANF--MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            99999  889999999999998874  689999999999998    78999999999999886  689999999999965


Q ss_pred             CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADCGHGKAQLEHGLG  284 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  284 (342)
                       .|   ++++|+.+|++|++.++..+.++||.+
T Consensus       154 -~g---~~~~A~~~~~~al~~~p~~a~~~lali  182 (184)
T 3vtx_A          154 -KG---LRDEAVKYFKKALEKEEKKAKYELALV  182 (184)
T ss_dssp             -TT---CHHHHHHHHHHHHHTTHHHHHHCSCCS
T ss_pred             -CC---CHHHHHHHHHHHHhCCccCHHHHHHhh
Confidence             33   999999999999999888888877754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.83  E-value=1e-18  Score=166.63  Aligned_cols=256  Identities=14%  Similarity=0.069  Sum_probs=201.8

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA  143 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l  143 (342)
                      ......+...+..|++.+|...+...++..+.  ++.+++.+|.+|..    .+++++|+..|+++++.  +++.+++.+
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l   99 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYIS----TGDLEKVIEFTTKALEIKPDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            34566666778899999999999888887655  88999999999998    58999999999999886  588999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHH-----------------------------------------------------------
Q 019340          144 GLMYWEMDKKEAAISLYRQAA-----------------------------------------------------------  164 (342)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~a~-----------------------------------------------------------  164 (342)
                      |.+|...|++++|+..|+ ++                                                           
T Consensus       100 a~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL  178 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence            999999999888887663 22                                                           


Q ss_pred             ---------------------------------------------------h--CCC-------HHHHHHHHHHHHcCCc
Q 019340          165 ---------------------------------------------------V--LGD-------PAGQFNLGISYLQAQP  184 (342)
Q Consensus       165 ---------------------------------------------------~--~~~-------~~a~~~Lg~~~~~g~~  184 (342)
                                                                         +  +++       ..+++.+|.++.  ..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~--~~  256 (537)
T 3fp2_A          179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF--LK  256 (537)
T ss_dssp             HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH--HT
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH--hc
Confidence                                                               1  122       224666777777  77


Q ss_pred             cCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          185 ANAEEAVKLLYQASIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       185 ~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      +++++|+.+|+++++.. .+.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++
T Consensus       257 ~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  328 (537)
T 3fp2_A          257 NNLLDAQVLLQESINLHPTPNSYIFLALTLAD----KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----LQDYKN  328 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC----SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH----hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHH
Confidence            88999999999987753 37888899999877    77889999999998875  578889999999865    238999


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      |+.+|++++..  .+..+++.+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+.
T Consensus       329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            99999999876  457888999999999999999999999998886554444444444445568888888888776543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.82  E-value=2.1e-18  Score=155.23  Aligned_cols=253  Identities=15%  Similarity=0.060  Sum_probs=204.6

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      ..+..+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   78 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLA----MGKSKAALPDLTKVIALKMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            4456666778899999999999888887655  78899999999988    58999999999999885  4788999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhCC-----CHHHHHHH------------HHHHHcCCccCHHHHHHHHHHHHHc--CCHHH
Q 019340          145 LMYWEMDKKEAAISLYRQAAVLG-----DPAGQFNL------------GISYLQAQPANAEEAVKLLYQASIA--GHVRA  205 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~L------------g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a  205 (342)
                      .++...|++++|+.+|+++++..     ++.++..+            |.++.  ..+++++|+.+|+++++.  .++.+
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF--DGADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCchHH
Confidence            99999999999999999998763     45666666            56777  788999999999998774  58899


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHH--
Q 019340          206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL--  279 (342)
Q Consensus       206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~--  279 (342)
                      +..+|.++..    .+++++|+.+|++++..  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+..++.  
T Consensus       157 ~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (359)
T 3ieg_A          157 RELRAECFIK----EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLDQDHKRCFAHY  228 (359)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCccchHHHHHH
Confidence            9999999987    77899999999999876  578899999999965    33899999999999876  3444432  


Q ss_pred             ----------HHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH----------HhhcChhcHHHHHHHHHhhhcCC
Q 019340          280 ----------EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI----------LQQLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       280 ----------~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~  339 (342)
                                .+|.++...|++++|+.+|+++++..+.      ...          ..+...++.++|...+++..+..
T Consensus       229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                      4488899999999999999999887654      232          12335677888888888887765


Q ss_pred             CC
Q 019340          340 SL  341 (342)
Q Consensus       340 ~~  341 (342)
                      |.
T Consensus       303 ~~  304 (359)
T 3ieg_A          303 PD  304 (359)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1e-18  Score=165.46  Aligned_cols=258  Identities=14%  Similarity=0.010  Sum_probs=217.5

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC--------
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--------  136 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------  136 (342)
                      +......+...+..|++.+|...+....+..+.  ++.+++.+|.+|..    .+++++|+..|++++..+.        
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~  112 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRASANEG----LGKFADAMFDLSVLSLNGDFNDASIEP  112 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSSSCCGGGTHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCCccchHHH
Confidence            344555666677889999999999988887654  88999999999999    5899999999999987653        


Q ss_pred             -------------------------------------------------------------------------HHHHHHH
Q 019340          137 -------------------------------------------------------------------------TLAMVDA  143 (342)
Q Consensus       137 -------------------------------------------------------------------------~~a~~~l  143 (342)
                                                                                               +.+++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (514)
T 2gw1_A          113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN  192 (514)
T ss_dssp             HHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHH
Confidence                                                                                     6777888


Q ss_pred             HHHHhc---CCCHHHHHHHHHHHHh----------------CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CH
Q 019340          144 GLMYWE---MDKKEAAISLYRQAAV----------------LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HV  203 (342)
Q Consensus       144 g~~~~~---~~~~~~A~~~~~~a~~----------------~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~  203 (342)
                      |.++..   .|++++|+.+|+++++                ..++.+++.+|.++.  ..+++++|+.+|+++++.. .+
T Consensus       193 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~l~~~~~~  270 (514)
T 2gw1_A          193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF--LKNDPLGAHEDIKKAIELFPRV  270 (514)
T ss_dssp             HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH--HSSCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCccH
Confidence            888876   8999999999999998                345789999999999  8899999999999998743 28


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHH
Q 019340          204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL  279 (342)
Q Consensus       204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  279 (342)
                      .+++.+|.+|..    .+++++|+.+|++++..  .++.++..+|.+|.. .|   ++++|+.+|++++..  .+..++.
T Consensus       271 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~  342 (514)
T 2gw1_A          271 NSYIYMALIMAD----RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQ---NYDQAGKDFDKAKELDPENIFPYI  342 (514)
T ss_dssp             HHHHHHHHHHHT----SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TT---CTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hC---CHHHHHHHHHHHHHhChhhHHHHH
Confidence            999999999987    77899999999999986  478899999999965 33   999999999999886  5678999


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          280 EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       280 ~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      .+|.++...|++++|+.+|+++++..+.+..........+...++.++|...+++..+.
T Consensus       343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  401 (514)
T 2gw1_A          343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL  401 (514)
T ss_dssp             HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999986554444444455555668899999988877554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.82  E-value=1.7e-18  Score=159.89  Aligned_cols=257  Identities=16%  Similarity=0.071  Sum_probs=207.0

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--------CCH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------GST  137 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------~~~  137 (342)
                      ....+...+..|++.+|...+...++..+....  +.+++.+|.+|..    .+++++|+.+|+++++.        ...
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY----LGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            445566678889999999999998887554221  2689999999998    68999999999999875        245


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccC-----------------HHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPAN-----------------AEEAVK  192 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~-----------------~~~A~~  192 (342)
                      .++..+|.+|...|++++|+.+|+++++.        ....++.++|.+|.  ..++                 +++|+.
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH--AKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH--HcCcccccccchhhhhhhhHHHHHHHH
Confidence            67899999999999999999999999854        23568999999999  8888                 999999


Q ss_pred             HHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCc
Q 019340          193 LLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       193 ~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~  256 (342)
                      +|+++++.    +    ...++.++|.+|..    .+++++|+.+|+++++.    ++    ..+++++|.+|.. .|  
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g--  277 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LG--  277 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-Cc--
Confidence            99998763    2    35688999999998    78999999999999875    22    3488999999965 33  


Q ss_pred             ccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcCh
Q 019340          257 LSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSA  322 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~  322 (342)
                       ++++|+.+|+++++.    ++    ..++..+|.+|...|++++|..+|+++++...      ..+.....+...+...
T Consensus       278 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          278 -QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence             999999999999875    22    56789999999999999999999999987632      2233344444455566


Q ss_pred             hcHHHHHHHHHhhhcC
Q 019340          323 TSRDRAMLVVDSWRAM  338 (342)
Q Consensus       323 ~~~~~a~~~~~~~~~~  338 (342)
                      ++.++|...+++..+.
T Consensus       357 g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          357 GGHERALKYAEQHLQL  372 (411)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            8999999988876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=2.5e-18  Score=164.02  Aligned_cols=248  Identities=14%  Similarity=0.048  Sum_probs=167.7

Q ss_pred             hhHHhhHHHHHHHHHHhCcCCC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhcCCC
Q 019340           79 PQLRAASLVCKSWNDALRPLRE-----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-STLAMVDAGLMYWEMDK  152 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~-----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~lg~~~~~~~~  152 (342)
                      +++.+|...+....+..++...     +.+++.+|.++..    .+++++|+.+|++++... ++.+++.+|.++...|+
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL----KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN  291 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence            3566666666666555444211     3456777777776    478888888888877753 46777788888888888


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      +++|+.+|+++++.  .++.+++.+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  365 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYF--ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEA  365 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Confidence            88888888887654  66777888888887  777888888888887664  467777888888776    667888888


Q ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHhhhc----------
Q 019340          229 WYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--------GKAQLEHGLGLFTE----------  288 (342)
Q Consensus       229 ~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~Lg~~~~~~----------  288 (342)
                      +|+++++.  .++.++..+|.+|... |   ++++|+.+|+++++..+        ...++.+|.++...          
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  441 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTDR-G---DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE  441 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHh-C---CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhH
Confidence            88877765  4667777788777542 2   77777777777766421        12345666777776          


Q ss_pred             CCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          289 GEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       289 ~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      |++++|+.+|+++++..+.+......+...+...++.++|...+++..+..|
T Consensus       442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  493 (537)
T 3fp2_A          442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR  493 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            7777777777777776554443334444444455777777777777665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.81  E-value=1.7e-18  Score=147.75  Aligned_cols=196  Identities=18%  Similarity=0.161  Sum_probs=156.5

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++...|++++|+.+|+++++.  .++.+++.+
T Consensus        22 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   97 (243)
T 2q7f_A           22 ASMTGGQQMGRGSE----FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA   97 (243)
T ss_dssp             ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            45677888888887    58999999999999986  47899999999999999999999999998865  678999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSF  251 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~  251 (342)
                      |.++.  ..+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+|..
T Consensus        98 a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           98 GNVYV--VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK----LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            99999  889999999999998875  578999999999987    77999999999999876  578899999999965


Q ss_pred             CCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                          .+++++|+.+|++++..  .++.++..+|.+|...|++++|..+|+++++..+.+.
T Consensus       172 ----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          172 ----EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             ----HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             ----cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence                33899999999999886  5688999999999999999999999999998865443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.81  E-value=1.5e-17  Score=160.80  Aligned_cols=221  Identities=15%  Similarity=0.042  Sum_probs=194.2

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK  152 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~  152 (342)
                      ....|++.+|...+....+..+  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+..+++.+|.+|...|+
T Consensus       349 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  422 (597)
T 2xpi_A          349 LHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLC----VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE  422 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT--TSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3466888889888887776654  378999999999999    58999999999999875  578999999999999999


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          153 KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       153 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      +++|+.+|+++++.  +++.++..+|.+|.  ..+++++|+.+|+++++.  .++.++..+|.+|..    .+++++|+.
T Consensus       423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  496 (597)
T 2xpi_A          423 HDQAISAYTTAARLFQGTHLPYLFLGMQHM--QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAIN  496 (597)
T ss_dssp             HHHHHHHHHHHHHTTTTCSHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHH
Confidence            99999999999876  67899999999999  889999999999999874  689999999999988    779999999


Q ss_pred             HHHHHHHC------C-C--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHH
Q 019340          229 WYLRAAEG------G-Y--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVY  297 (342)
Q Consensus       229 ~~~~A~~~------~-~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~  297 (342)
                      +|+++++.      . +  ..++..+|.+|.. .|   ++++|+.+|+++++.  +++.++..||.+|...|++++|..+
T Consensus       497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LK---MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999875      2 1  6789999999965 33   999999999999876  5789999999999999999999999


Q ss_pred             HHHHHHcCcHHHHH
Q 019340          298 LELATRAGETAADH  311 (342)
Q Consensus       298 ~~~a~~~~~~~a~~  311 (342)
                      |+++++..+.+...
T Consensus       573 ~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          573 LHESLAISPNEIMA  586 (597)
T ss_dssp             HHHHHHHCTTCHHH
T ss_pred             HHHHHhcCCCChHH
Confidence            99999987654443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=8e-18  Score=144.74  Aligned_cols=196  Identities=15%  Similarity=0.026  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|+++++.  .++.+++.+|
T Consensus        37 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la  112 (252)
T 2ho1_A           37 RDAYIQLGLGYLQ----RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHH----TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence            5677889999988    58999999999999985  48899999999999999999999999999865  6789999999


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          177 ISYLQAQPANAEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      .+|.  ..+++++|+.+|+++++    +.++.+++.+|.+|..    .+++++|+.+|+++++.  .+..+++.+|.+|.
T Consensus       113 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          113 GFLY--EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ----MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             HHHH--HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHH--HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            9999  88999999999999987    3467899999999987    77999999999999886  57899999999996


Q ss_pred             cCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          251 FGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       251 ~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      .    .+++++|+.+|+++++.  .+..++..++.++...|++++|..+++++++..+.+..
T Consensus       187 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          187 K----EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             H----TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             H----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            5    23999999999999876  56888999999999999999999999999998765443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.80  E-value=4.5e-18  Score=156.05  Aligned_cols=258  Identities=16%  Similarity=0.066  Sum_probs=207.4

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----  135 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----  135 (342)
                      ......+...+..|++.+|...+...++..+....  +.+++.+|.+|..    .+++++|+.+|++++..    +    
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34556677778899999999999988887554221  4689999999998    58999999999999765    2    


Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccC--------------------H
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPAN--------------------A  187 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~--------------------~  187 (342)
                      .+.++..+|.+|...|++++|+.+|+++++.    ++    ..++.++|.+|.  ..++                    +
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~~~~a~~~~  163 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--AKGKSFGCPGPQDVGEFPEEVRDAL  163 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHHHTCC-------CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH--HcCCcccccccchhhhhhhhHHHHH
Confidence            3567899999999999999999999999865    33    558999999999  7888                    9


Q ss_pred             HHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHc
Q 019340          188 EEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSF  251 (342)
Q Consensus       188 ~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~  251 (342)
                      ++|+.+|+++++.    +    ...++.++|.+|..    .+++++|+.+|+++++.    ++    ..++.++|.+|..
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            9999999998763    2    35678999999987    77999999999999864    22    3488999999965


Q ss_pred             CCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVIL  317 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~  317 (342)
                       .|   ++++|+.+|++++..    ++    ..++.++|.+|...|++++|..+|+++++...      ..+........
T Consensus       240 -~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  315 (406)
T 3sf4_A          240 -LG---EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN  315 (406)
T ss_dssp             -TT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cC---ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence             33   999999999999864    22    56789999999999999999999999987622      12334444455


Q ss_pred             hhcChhcHHHHHHHHHhhhc
Q 019340          318 QQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       318 ~~~~~~~~~~a~~~~~~~~~  337 (342)
                      .+...++.++|...+++..+
T Consensus       316 ~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          316 AYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55566889999888777543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=4.1e-18  Score=151.68  Aligned_cols=225  Identities=16%  Similarity=0.028  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      ..++.+|.++..    .+++++|+.+|+++++.  +++.+++.+|.++...|++++|+.+|+++++.  .++.+++.+|.
T Consensus        22 ~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           22 ENPMEEGLSMLK----LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             SCHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            456788998888    58999999999999885  58899999999999999999999999999865  68999999999


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHH--------------HH-HHhcCCCCCCCHHHHHHHHHHHHHC--CC
Q 019340          178 SYLQAQPANAEEAVKLLYQASIAG--HVRAQYQL--------------AL-CLHRGRGVDFNLQEAARWYLRAAEG--GY  238 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l--------------g~-~~~~g~~~~~~~~~A~~~~~~A~~~--~~  238 (342)
                      +|.  ..+++++|+.+|+++++..  +...+..+              |. ++..    .+++++|+.+|+++++.  .+
T Consensus        98 ~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~  171 (327)
T 3cv0_A           98 SHT--NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA----PNEYRECRTLLHAALEMNPND  171 (327)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS----HHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHH--HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH----cccHHHHHHHHHHHHhhCCCC
Confidence            999  8999999999999998753  44444444              44 3443    66899999999999876  57


Q ss_pred             HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 019340          239 VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVI  316 (342)
Q Consensus       239 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~  316 (342)
                      +.+++.+|.+|..    .+++++|+.+++++++.  ++..++..+|.++...|++++|+.+|+++++..+.+........
T Consensus       172 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          172 AQLHASLGVLYNL----SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            8999999999965    33999999999999886  56889999999999999999999999999998765444444455


Q ss_pred             HhhcChhcHHHHHHHHHhhhcCCC
Q 019340          317 LQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       317 ~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ..+...++.++|...+++..+..|
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~  271 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQV  271 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC
Confidence            555666899999999888766554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=2.6e-18  Score=162.62  Aligned_cols=191  Identities=17%  Similarity=0.052  Sum_probs=111.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCH-HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNL-DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~-~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~L  175 (342)
                      ++.+++.+|.+|..    .+++ ++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|+++++. .++.+++++
T Consensus       101 ~a~~~~~lg~~~~~----~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l  176 (474)
T 4abn_A          101 EAQALMLKGKALNV----TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL  176 (474)
T ss_dssp             CHHHHHHHHHHHTS----SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            56666666666665    3566 6666666666654  35666666666666666666666666666654 225666666


Q ss_pred             HHHHHcCCc---------cCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHC----
Q 019340          176 GISYLQAQP---------ANAEEAVKLLYQASIA--GHVRAQYQLALCLHRG----RGVDFNLQEAARWYLRAAEG----  236 (342)
Q Consensus       176 g~~~~~g~~---------~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g----~~~~~~~~~A~~~~~~A~~~----  236 (342)
                      |.+|.  ..         +++++|+.+|+++++.  +++.+++++|.+|..-    ....+++++|+.+|++|++.    
T Consensus       177 g~~~~--~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  254 (474)
T 4abn_A          177 SMVLR--QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA  254 (474)
T ss_dssp             HHHHT--TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHH--HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence            66666  55         6666666666666553  4566666666666530    00014566666666666552    


Q ss_pred             -CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 019340          237 -GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       237 -~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                       +++.+++++|.+|.. .|   ++++|+.+|+++++.  ++..++.+++.++...|++++|+..+.+
T Consensus       255 ~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          255 SSNPDLHLNRATLHKY-EE---SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             GGCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             345566666666643 22   666666666666554  4455566666666666666666655443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.80  E-value=1.2e-17  Score=148.45  Aligned_cols=259  Identities=15%  Similarity=0.053  Sum_probs=206.9

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE--AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----ST  137 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~  137 (342)
                      ....+...+..|++.+|...+...++..+....  +.+++.+|.+|..    .+++++|+.+|++++..    +    .+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY----LHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            445566677889999999999988887544211  5788899999998    58999999999999875    2    35


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccC--------------------HHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPAN--------------------AEE  189 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~--------------------~~~  189 (342)
                      .++..+|.+|...|++++|+.+|+++++.    ++    ..++..+|.+|.  ..++                    +++
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH--AKGKSFGCPGPQDTGEFPEDVRNALQA  161 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HcCcccccchhhhhhhhhhhHHHHHHH
Confidence            67889999999999999999999999854    33    458899999999  7778                    999


Q ss_pred             HHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC
Q 019340          190 AVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGE  253 (342)
Q Consensus       190 A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~  253 (342)
                      |+.+|++++..    +    ...++.++|.+|..    .+++++|+.+|+++++.    ++    ..++.++|.+|..  
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--  235 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Confidence            99999998753    2    35688999999987    77999999999999864    22    3488999999965  


Q ss_pred             CCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH------HHHHHHHHHHhh
Q 019340          254 GLPLSHRQARKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET------AADHVKNVILQQ  319 (342)
Q Consensus       254 g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~------~a~~~~~~~~~~  319 (342)
                        .+++++|+.++++++..    ++    ..++..+|.+|...|++++|..+|+++++..+.      .+.....+...+
T Consensus       236 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          236 --LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             --HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence              34999999999999864    22    567899999999999999999999999876322      233344455555


Q ss_pred             cChhcHHHHHHHHHhhhcCCC
Q 019340          320 LSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       320 ~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ...++.++|...+++..+..+
T Consensus       314 ~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          314 TALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHC--
T ss_pred             HHcCChHHHHHHHHHHHHHHH
Confidence            667899999999988776544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.80  E-value=3.1e-18  Score=162.08  Aligned_cols=209  Identities=14%  Similarity=0.035  Sum_probs=172.4

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKK-EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      +.+++++..+......  .++.+++.+|.+|...|++ ++|+.+|+++++.  +++.++++||.+|.  ..+++++|+.+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~  159 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW--KKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Confidence            3467788888877664  4889999999999999999 9999999999865  78999999999999  89999999999


Q ss_pred             HHHHHHcC-CHHHHHHHHHHHhcC-CCCC----CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC-----CCCcccHH
Q 019340          194 LYQASIAG-HVRAQYQLALCLHRG-RGVD----FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-----EGLPLSHR  260 (342)
Q Consensus       194 ~~~a~~~~-~~~a~~~lg~~~~~g-~~~~----~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-----~g~~~~~~  260 (342)
                      |+++++.. ++.+++++|.+|..- .+..    +++++|+.+|+++++.  +++.+++++|.+|...     . ..++++
T Consensus       160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~  238 (474)
T 4abn_A          160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQ  238 (474)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHH
Confidence            99999864 479999999999871 1111    7899999999999886  6899999999999641     1 115899


Q ss_pred             HHHHHHHHHHHc-----CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHH
Q 019340          261 QARKWMKRAADC-----GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVV  332 (342)
Q Consensus       261 ~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~  332 (342)
                      +|+.+|+++++.     +++.+++++|.+|...|++++|+.+|+++++..+  ..+...++.++..+  ++.++|....
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l--g~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL--SRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence            999999999874     5689999999999999999999999999999865  44555555555444  5666666533

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.79  E-value=2.5e-18  Score=169.79  Aligned_cols=162  Identities=17%  Similarity=0.062  Sum_probs=96.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      +++++++||.+|...|++++|+.+|++|++.  +++.++++||.+|.  ..|++++|+.+|+++++.  ++++++++||.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~--~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ--QQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3455555555555555555555555555533  45555555555555  555555555555555442  35555555555


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT  287 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~  287 (342)
                      +|..    .+++++|+.+|++|++.  +++.+++++|.+|.. .|   ++++|+.+|++|++.  +++.++.+||.+|..
T Consensus        86 ~l~~----~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g---~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           86 TLKE----MQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG---NIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence            5555    44556666666655553  355666666666643 22   666777777776654  456777777777777


Q ss_pred             cCCHHHHHHHHHHHHHcCcH
Q 019340          288 EGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       288 ~~~~~~A~~~~~~a~~~~~~  307 (342)
                      .|++++|..+|+++++..+.
T Consensus       158 ~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          158 VCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             TTCCTTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhChh
Confidence            77777777777777665433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.79  E-value=5e-17  Score=136.62  Aligned_cols=196  Identities=12%  Similarity=0.048  Sum_probs=172.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|.++..    .+++++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|+++++.  .++.++..+
T Consensus         7 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            7 VSNIKTQLAMEYMR----GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            57788999999998    58999999999999986  47899999999999999999999999999865  688999999


Q ss_pred             HHHHHcCCc-cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 019340          176 GISYLQAQP-ANAEEAVKLLYQASI----AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC  248 (342)
Q Consensus       176 g~~~~~g~~-~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~  248 (342)
                      |.++.  .. +++++|+.+|+++++    +.++.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.+
T Consensus        83 ~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           83 GWFLC--GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHH--TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHH--HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            99999  88 999999999999988    2347899999999988    77999999999999876  578999999999


Q ss_pred             HHcCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          249 YSFGEGLPLSHRQARKWMKRAADC---GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       249 y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      |..    .+++++|+.+|++++..   .+...+..++.++...|+.++|..+++.+....+.+.
T Consensus       157 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          157 KML----AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHH----HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence            965    33999999999999874   5678888888999999999999999999987755433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.79  E-value=8e-18  Score=146.28  Aligned_cols=237  Identities=14%  Similarity=0.022  Sum_probs=185.2

Q ss_pred             CCChhHHhhHHHHHHHHHHhCc--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC
Q 019340           76 FTLPQLRAASLVCKSWNDALRP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD  151 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~--~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~  151 (342)
                      ...+++.+|...+....+..+.  ..++.+++.+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|...|
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            3557888888877777765321  2357899999999999    58999999999999986  47999999999999999


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 019340          152 KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAA  227 (342)
Q Consensus       152 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~  227 (342)
                      ++++|+.+|+++++.  +++.+++.+|.+|.  ..+++++|+.+|+++++.  .++.....++.++.     .+++++|+
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~  164 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAK  164 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHH
Confidence            999999999999875  67999999999999  899999999999999875  46666666665544     45899999


Q ss_pred             HHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          228 RWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH------GKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       228 ~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      .+|++++...  +... +.++.++. +.+   +.++|+..+++++....      ..+++.+|.+|...|++++|+.+|+
T Consensus       165 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  239 (275)
T 1xnf_A          165 EVLKQHFEKSDKEQWG-WNIVEFYL-GNI---SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK  239 (275)
T ss_dssp             HHHHHHHHHSCCCSTH-HHHHHHHT-TSS---CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHH-HHHHHHHH-Hhc---CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999988753  3333 34555553 333   67899999999976533      6788999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHH
Q 019340          300 LATRAGETAADHVKNVILQQLSATSRDRAMLV  331 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~  331 (342)
                      ++++..+.+.... ...  ....++.++|...
T Consensus       240 ~al~~~p~~~~~~-~~~--~~~l~~~~~a~~~  268 (275)
T 1xnf_A          240 LAVANNVHNFVEH-RYA--LLELSLLGQDQDD  268 (275)
T ss_dssp             HHHTTCCTTCHHH-HHH--HHHHHHHHHC---
T ss_pred             HHHhCCchhHHHH-HHH--HHHHHHHHhhHHH
Confidence            9999876443322 222  2233556666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.78  E-value=9.7e-17  Score=136.28  Aligned_cols=200  Identities=14%  Similarity=0.132  Sum_probs=162.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ  172 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  172 (342)
                      ..++.+++.+|.+|..    .+++++|+.+|+++++.   .+..+++.+|.++...|++++|+.+|+++++.  +++.++
T Consensus         4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   79 (228)
T 4i17_A            4 TTDPNQLKNEGNDALN----AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY   79 (228)
T ss_dssp             CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH
Confidence            3478899999999999    59999999999999985   47788999999999999999999999999976  678999


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH-------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCC----H
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIA--GHV-------RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGY----V  239 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~-------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~----~  239 (342)
                      +.+|.+|.  ..+++++|+.+|+++++.  +++       .+++++|.++..    .+++++|+.+|+++++...    +
T Consensus        80 ~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  153 (228)
T 4i17_A           80 IGKSAAYR--DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKT  153 (228)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHHH--HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccH
Confidence            99999999  899999999999999884  566       679999999987    7899999999999998754    4


Q ss_pred             HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HHHHHHHHH
Q 019340          240 RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AADHVKNVI  316 (342)
Q Consensus       240 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a~~~~~~~  316 (342)
                      .+++++|.+|..         .+...+.++............+......+.+++|+.+|+++++..|.  ++...+..+
T Consensus       154 ~~~~~l~~~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          154 DALYSLGVLFYN---------NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            789999999953         34455666666543223333444455677899999999999998654  444444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.77  E-value=7e-17  Score=135.73  Aligned_cols=197  Identities=14%  Similarity=0.031  Sum_probs=167.3

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLA  210 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  210 (342)
                      +++.+++.+|.++...|++++|+.+|+++++.  +++.+++.+|.++.  ..+++++|+.+|+++++.  .++.++..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ--YLKVNDKAQESFRQALSIKPDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            35778899999999999999999999999865  67999999999999  889999999999999874  5899999999


Q ss_pred             HHHhcCCCCC-CCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          211 LCLHRGRGVD-FNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGL  283 (342)
Q Consensus       211 ~~~~~g~~~~-~~~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  283 (342)
                      .+|..    . +++++|+.+|+++++  .  .+..+++.+|.+|.. .|   ++++|+.+|+++++.  .+..++..+|.
T Consensus        84 ~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A           84 WFLCG----RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QG---QFGLAEAYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             HHHHT----TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHH----hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            99987    7 799999999999998  3  347889999999965 33   999999999999886  56899999999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          284 GLFTEGEMMKAVVYLELATRAGE-TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       284 ~~~~~~~~~~A~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ++...|++++|..+|+++++..+ ................++.+.+....+.+.+..|.
T Consensus       156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            99999999999999999998755 33333333444445567888898888888765554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=9.8e-18  Score=165.59  Aligned_cols=160  Identities=17%  Similarity=0.136  Sum_probs=147.1

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      .++.++++||.+|..    .|++++|+.+|++|++.  +++.++++||.+|...|++++|+.+|++|++.  ++++++++
T Consensus         7 ~~a~al~nLG~~~~~----~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            7 THADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            478999999999999    69999999999999986  58999999999999999999999999999865  78999999


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      ||.+|.  ..+++++|+.+|+++++.  ++++++++||.+|..    .+++++|+.+|++|++.  +++.++++||.+|.
T Consensus        83 Lg~~l~--~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A           83 MGNTLK--EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            999999  899999999999999874  689999999999998    78999999999999986  68999999999996


Q ss_pred             cCCCCcccHHHHHHHHHHHHHc
Q 019340          251 FGEGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       251 ~g~g~~~~~~~A~~~~~~a~~~  272 (342)
                      . .|   ++++|.++|+++++.
T Consensus       157 ~-~g---~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          157 I-VC---DWTDYDERMKKLVSI  174 (723)
T ss_dssp             H-TT---CCTTHHHHHHHHHHH
T ss_pred             h-cc---cHHHHHHHHHHHHHh
Confidence            5 33   899999999998764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.77  E-value=4.3e-17  Score=140.13  Aligned_cols=195  Identities=18%  Similarity=0.129  Sum_probs=168.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC  212 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  212 (342)
                      +.+++.+|.++...|++++|+.+|+++++.  +++.+++.+|.+|.  ..+++++|+.+|+++++.  .++.+++.+|.+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ--TEMEPKLADEEYRKALASDSRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence            567889999999999999999999999865  68999999999999  889999999999999875  588999999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAE--G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF  286 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~--~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  286 (342)
                      |..    .+++++|+.+|++++.  .  .+..+++.+|.+|.. .|   ++++|+.+|+++++.  .+..+++.+|.++.
T Consensus       115 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          115 LYE----QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             HHH----TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHH----HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            988    7799999999999988  3  467889999999965 33   999999999999886  56889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          287 TEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       287 ~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ..|++++|..+|+++++..+............+...++.++|...++++.+..|.
T Consensus       187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999886544444444444445568999999999998877664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=7.8e-17  Score=151.45  Aligned_cols=212  Identities=13%  Similarity=-0.030  Sum_probs=168.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL-  166 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-  166 (342)
                      ..+..+..||.+|..    .|++++|+++|++|++.           ....++.++|.+|...|++++|+.+|+++++. 
T Consensus        49 ~~a~~yn~Lg~~~~~----~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           49 FKATMCNLLAYLKHL----KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             -CCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            346778889999998    68999999999999864           24567889999999999999999999999742 


Q ss_pred             ---------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHH
Q 019340          167 ---------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR-GRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       167 ---------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~-g~~~~~~~~~A~~~~~~A~  234 (342)
                               ..+..+.++|.++..-..+++++|+.+|+++++  +++++++..+|.++.. +.  .++.++|+..|++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--~~~~~~al~~~~~al  202 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--WPPSQNAIDPLRQAI  202 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--SCCCCCTHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHh
Confidence                     457889999987764245689999999999987  5689999999988642 11  346678999999998


Q ss_pred             HC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH--
Q 019340          235 EG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA--  308 (342)
Q Consensus       235 ~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~--  308 (342)
                      +.  .++.++.++|..+..-.....++++|..+|++++..  .+..++.++|.+|...|++++|+.+|+++++..|..  
T Consensus       203 ~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  282 (472)
T 4g1t_A          203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY  282 (472)
T ss_dssp             HHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             hcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence            76  578889999987754332355899999999999876  668899999999999999999999999999987544  


Q ss_pred             HHHHHHHH
Q 019340          309 ADHVKNVI  316 (342)
Q Consensus       309 a~~~~~~~  316 (342)
                      +...++.+
T Consensus       283 ~~~~lg~~  290 (472)
T 4g1t_A          283 LHCQIGCC  290 (472)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.76  E-value=1.1e-16  Score=146.93  Aligned_cols=223  Identities=11%  Similarity=0.041  Sum_probs=128.5

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCC----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CH
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLR----EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----ST  137 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~  137 (342)
                      ++...+..|++.+|...+....+.....+    .+.+++.+|.+|..    .+++++|+.+|++|++.    +     .+
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY----MKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            33334556666666666655555433333    23566666766666    46667777777766653    1     13


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--------cC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI--------AG  201 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--------~~  201 (342)
                      .++.++|.+|...|++++|+.+|+++++.    ++    ..++.+||.+|.  ..+++++|+.+|+++++        +.
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            45666677776667777777777666643    22    236666666666  66667777777776665        22


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CCHH---HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-C
Q 019340          202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GYVR---AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-G  273 (342)
Q Consensus       202 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~~~---a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~  273 (342)
                      .+.+++++|.+|..    .+++++|+.+|+++++.    +++.   .+..+|.+|.. .|-.....+|+.++++.-.. .
T Consensus       263 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~~~~~~  337 (383)
T 3ulq_A          263 LPQAYFLITQIHYK----LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESKMLYAD  337 (383)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCcCHHH
Confidence            45566666766665    55667777777666653    2221   23456666633 22112255666666555211 1


Q ss_pred             CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          274 HGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       274 ~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ...++..||.+|...|++++|..+|+++++.
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2345566677777777777777777666653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=5.6e-17  Score=152.45  Aligned_cols=258  Identities=14%  Similarity=0.008  Sum_probs=168.8

Q ss_pred             hCCChhHHhhHHHHHHHHHHh-------CcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----------CCH
Q 019340           75 SFTLPQLRAASLVCKSWNDAL-------RPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----------GST  137 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~-------~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~  137 (342)
                      .+..|++.+|...+.+..+..       .+...+.++.++|.+|..    .+++++|+.+|+++.+.          ..+
T Consensus        61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~----~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH----MGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            456788999988777776542       233456788899999988    58999999999998763          256


Q ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CCccCHH------------------------
Q 019340          138 LAMVDAGLMYWE--MDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQPANAE------------------------  188 (342)
Q Consensus       138 ~a~~~lg~~~~~--~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~~~~~~------------------------  188 (342)
                      .++.++|..+..  .+++++|+.+|+++++.  ++++++..+|.++.. +..++.+                        
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            777777765543  46899999999998754  778888877776542 2233334                        


Q ss_pred             --------------HHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          189 --------------EAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       189 --------------~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                                    +|+.+|++++..  .++.++.++|.+|..    .+++++|+..|++|++.  .++.+++++|.+|.
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence                          444445444432  345555555555555    45566666666666554  45566666666653


Q ss_pred             cC-----------CC----CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH----
Q 019340          251 FG-----------EG----LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA----  309 (342)
Q Consensus       251 ~g-----------~g----~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a----  309 (342)
                      ..           .+    ....+++|+.+|+++++.  .+..+++++|.+|...|++++|+.+|+++++..+.+.    
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence            10           00    012355666666666554  3355667888888889999999999999998754322    


Q ss_pred             -HHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          310 -DHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       310 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                       ...++.+. ....++.++|+..+++..+..|.
T Consensus       373 ~~~~~~~~~-~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          373 LHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HHHHHHHHH-HHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcc
Confidence             22333332 23567889999998888777664

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.76  E-value=5.1e-17  Score=138.49  Aligned_cols=206  Identities=17%  Similarity=0.218  Sum_probs=162.9

Q ss_pred             HHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340           67 DVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAG  144 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg  144 (342)
                      .....+...+..+++.+|...+....+..+  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+..++..+|
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSS----VNELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             -----------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            344555566788999999887777776544  378999999999998    58999999999999986  4889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCC
Q 019340          145 LMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVD  220 (342)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~  220 (342)
                      .++...|++++|+.+|+++++.  .++.+++.+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.++..    .
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  172 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV--KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN----E  172 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----H
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----c
Confidence            9999999999999999999865  68999999999999  889999999999999875  589999999999987    7


Q ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhc
Q 019340          221 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE  288 (342)
Q Consensus       221 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~  288 (342)
                      +++++|+.+|++++..  .++.+++.+|.+|..    .+++++|+.+|+++++.  ++..++..++.+....
T Consensus       173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence            7899999999999886  578899999999965    33999999999999886  5678888777765443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.76  E-value=8.9e-17  Score=142.34  Aligned_cols=218  Identities=15%  Similarity=0.059  Sum_probs=178.3

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GSTLAMVDAGLMY  147 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~lg~~~  147 (342)
                      +...+..|++..|...+..     ...+...++..++..+..    .++.++|+..+++.+..    +++.+++.+|.++
T Consensus        41 ~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~----~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~  111 (291)
T 3mkr_A           41 YRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLAS----HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY  111 (291)
T ss_dssp             HHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHC----STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcC----CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            4455677888888644322     233456788888988887    48999999999998864    4889999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHH----HHhcCCCCCCCH
Q 019340          148 WEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLAL----CLHRGRGVDFNL  223 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~----~~~~g~~~~~~~  223 (342)
                      ...|++++|+.+|++   .++++++..+|.+|.  ..|++++|+..|+++++........+++.    ++..    .+++
T Consensus       112 ~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~--~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~----~~~~  182 (291)
T 3mkr_A          112 FYDQNPDAALRTLHQ---GDSLECMAMTVQILL--KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG----GEKL  182 (291)
T ss_dssp             HHTTCHHHHHHHHTT---CCSHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC----TTHH
T ss_pred             HHCCCHHHHHHHHhC---CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC----chHH
Confidence            999999999999999   789999999999999  89999999999999987643233334332    2222    4689


Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH-HHHHH
Q 019340          224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYL  298 (342)
Q Consensus       224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~  298 (342)
                      ++|+..|+++++.  .++.+++++|.+|.. .|   ++++|..+|++++..  +++.+++++|.++...|+..+ +..++
T Consensus       183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g---~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          183 QDAYYIFQEMADKCSPTLLLLNGQAACHMA-QG---RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999885  688999999999965 33   999999999999886  679999999999999999876 57899


Q ss_pred             HHHHHcCcHHHHH
Q 019340          299 ELATRAGETAADH  311 (342)
Q Consensus       299 ~~a~~~~~~~a~~  311 (342)
                      +++++.+|.++..
T Consensus       259 ~~~~~~~P~~~~~  271 (291)
T 3mkr_A          259 SQLKDAHRSHPFI  271 (291)
T ss_dssp             HHHHHHCTTCHHH
T ss_pred             HHHHHhCCCChHH
Confidence            9999998766543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.75  E-value=2.2e-16  Score=144.82  Aligned_cols=220  Identities=13%  Similarity=0.086  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C---
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G---  167 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---  167 (342)
                      .++.+|.++..    .+++++|+.+|++|+..    +    .+.+++.+|.+|...|++++|+.++++|++.    +   
T Consensus       105 ~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  180 (383)
T 3ulq_A          105 FNFFRGMYELD----QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN  180 (383)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred             HHHHHHHHHHH----hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence            45568999888    58999999999999985    3    3568899999999999999999999999854    2   


Q ss_pred             --CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH--
Q 019340          168 --DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE--  235 (342)
Q Consensus       168 --~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~--  235 (342)
                        ...++.++|.+|.  ..+++++|+.+|+++++.    ++    ..+++++|.+|..    .+++++|+.+|++|++  
T Consensus       181 ~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          181 IRLLQCHSLFATNFL--DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence              2468999999999  899999999999999864    22    3589999999998    7899999999999998  


Q ss_pred             ------CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CCH---HHHHHHHHHhhhcCC---HHHHHHHHH
Q 019340          236 ------GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GHG---KAQLEHGLGLFTEGE---MMKAVVYLE  299 (342)
Q Consensus       236 ------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~---~a~~~Lg~~~~~~~~---~~~A~~~~~  299 (342)
                            ...+.+++++|.+|.. .|   ++++|+.+++++++.    +++   ..+..||.+|...|+   +++|+.+++
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~  330 (383)
T 3ulq_A          255 EESNILPSLPQAYFLITQIHYK-LG---KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE  330 (383)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             HhhccchhHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                  2346789999999965 33   999999999999874    343   235789999999999   888888888


Q ss_pred             HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      +. ...+........+...+...++.++|...+++...
T Consensus       331 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          331 SK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            87 22223333334444555566889999888776643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.1e-16  Score=141.21  Aligned_cols=227  Identities=15%  Similarity=0.085  Sum_probs=131.1

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhC------cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------C-
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALR------PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G-  135 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~-  135 (342)
                      ...+...+..|++.+|...+....+...      ....+.+++.+|.+|..    .+++++|+.+|++++..      + 
T Consensus        31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD----QNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            3344445566777777766666666431      12234566667777766    46777777777776653      1 


Q ss_pred             ---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--
Q 019340          136 ---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--  200 (342)
Q Consensus       136 ---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--  200 (342)
                         ...++..+|.+|...|++++|+.+|+++++.          ....++.++|.++.  ..+++++|+.+|+++++.  
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--NQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence               2345666777777777777777777776643          12345666777776  666777777777776553  


Q ss_pred             ------C--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcC--CCCcccH
Q 019340          201 ------G--HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-----------YVRAMYNTSLCYSFG--EGLPLSH  259 (342)
Q Consensus       201 ------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-----------~~~a~~~lg~~y~~g--~g~~~~~  259 (342)
                            .  ...+++.+|.+|..    .+++++|+.+|+++++..           ....+..++.++..+  ......+
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF  260 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence                  1  23456667777766    567777777777766421           111222333332221  1112244


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      .++..+++.+...  ....++..||.+|...|++++|..+|++++++.
T Consensus       261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            5555566665543  335677888888888888888888888888764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.74  E-value=2.2e-16  Score=137.08  Aligned_cols=213  Identities=14%  Similarity=-0.018  Sum_probs=176.1

Q ss_pred             cCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHH
Q 019340          118 RKNLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEE  189 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~  189 (342)
                      .+++++|+..|+++++.      +++.+++.+|.+|...|++++|+.+|+++++.  .++.+++.+|.+|.  ..+++++
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~   95 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDA   95 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HTTCHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HccCHHH
Confidence            57899999999999986      25778999999999999999999999999865  68999999999999  8999999


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019340          190 AVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKW  265 (342)
Q Consensus       190 A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~  265 (342)
                      |+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++.  .+......++.++.     .+++++|+.+
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~  166 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-----KLDEKQAKEV  166 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----hcCHHHHHHH
Confidence            99999999884  589999999999998    78999999999999886  45555555555543     3499999999


Q ss_pred             HHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH----HHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          266 MKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET----AADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       266 ~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      |++++... +....+.++.++...++.++|+..++++++..+.    ++.....+...+...++.++|...+++.....|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          167 LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence            99998762 2233456788889999999999999999877652    234444445555566899999999999988877


Q ss_pred             C
Q 019340          341 L  341 (342)
Q Consensus       341 ~  341 (342)
                      .
T Consensus       247 ~  247 (275)
T 1xnf_A          247 H  247 (275)
T ss_dssp             T
T ss_pred             h
Confidence            4

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.74  E-value=9.1e-17  Score=148.16  Aligned_cols=224  Identities=17%  Similarity=0.109  Sum_probs=182.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------  166 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------  166 (342)
                      .+..++.+|..+..    .+++++|+.+|+++++.+  ++    .+++.+|.+|...|++++|+.+|+++++.       
T Consensus        47 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  122 (411)
T 4a1s_A           47 MCLELALEGERLCN----AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR  122 (411)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence            34567788999988    589999999999999863  44    57899999999999999999999999854       


Q ss_pred             -CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCCCCCC---------------
Q 019340          167 -GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--------GHVRAQYQLALCLHRGRGVDFN---------------  222 (342)
Q Consensus       167 -~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~---------------  222 (342)
                       ....+++.+|.+|.  ..+++++|+.+|+++++.        ....++.++|.+|..    .++               
T Consensus       123 ~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          123 LGEAKSSGNLGNTLK--VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA----KGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHHHHHHSTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----cCcccccccchhhhhhhh
Confidence             33578999999999  889999999999998764        246688999999987    667               


Q ss_pred             --HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 019340          223 --LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG  284 (342)
Q Consensus       223 --~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~  284 (342)
                        +++|+.+|+++++.    +    ...++.++|.+|..    .+++++|+.+|+++++.    ++    ..++.++|.+
T Consensus       197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL----LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS  272 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence              99999999998764    2    34588999999965    33999999999999874    23    2378999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          285 LFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      |...|++++|+.+|+++++..+      ..+.....+...+...++.++|...+++...
T Consensus       273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999987643      2234444444455566889999888877643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.73  E-value=3.2e-16  Score=143.60  Aligned_cols=220  Identities=11%  Similarity=0.071  Sum_probs=156.4

Q ss_pred             hhCCChhHHhhHHHHHHHHHHhCcCCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-----CHHHH
Q 019340           74 ASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-----STLAM  140 (342)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-----~~~a~  140 (342)
                      ..+..|++.+|...+....+.....++    +.+++.+|.+|..    .+++++|+.+|++|++.    +     .+.++
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH----MKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345678888888777777666554443    5678888888887    57888888888888763    1     24466


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH-----c--CCHHH
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI-----A--GHVRA  205 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~-----~--~~~~a  205 (342)
                      .++|.+|...|++++|+.+|+++++.    ++    ..++.+||.+|.  ..+++++|+.+|+++++     .  ..+.+
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD--RSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            78888888888888888888888753    33    357778888888  77888888888888876     2  24677


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-CCHHH
Q 019340          206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-GHGKA  277 (342)
Q Consensus       206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a  277 (342)
                      ++++|.+|..    .+++++|+.+|+++++.    +   .......++.+|.. .+-...+.+|+.++++.-.. .....
T Consensus       264 ~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~-~~~~~~~~~al~~~~~~~~~~~~~~~  338 (378)
T 3q15_A          264 LFGLSWTLCK----AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE-TVDERKIHDLLSYFEKKNLHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhCCChhHHHHH
Confidence            8888888877    67888888888888764    1   12345566666633 33123377777777763211 22455


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          278 QLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       278 ~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      +..||.+|...|++++|..+|+++++.
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            678888888888888888888888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.73  E-value=2e-16  Score=144.94  Aligned_cols=224  Identities=18%  Similarity=0.118  Sum_probs=182.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C--
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--  167 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--  167 (342)
                      .+.+++.+|.++..    .+++++|+.+|+++++.+  +    ..+++.+|.+|...|++++|+.+|+++++.    +  
T Consensus         8 ~~~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   83 (406)
T 3sf4_A            8 SCLELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ   83 (406)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence            56778899999998    589999999999999863  4    367889999999999999999999998754    2  


Q ss_pred             --CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC---------------
Q 019340          168 --DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN---------------  222 (342)
Q Consensus       168 --~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~---------------  222 (342)
                        .+.++..+|.+|.  ..+++++|+.+|+++++.    ++    +.++.++|.+|..    .++               
T Consensus        84 ~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           84 LGEAKASGNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCH
T ss_pred             HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhh
Confidence              3568899999999  889999999999998764    23    5689999999987    667               


Q ss_pred             -----HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHH
Q 019340          223 -----LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEH  281 (342)
Q Consensus       223 -----~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~L  281 (342)
                           +++|+.+|.+++..    +    ...++.++|.+|..    .+++++|+.+|+++++.    ++    ..++.++
T Consensus       158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence                 99999999998764    2    24578999999965    34999999999999864    22    3478999


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHcCcHH------HHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          282 GLGLFTEGEMMKAVVYLELATRAGETA------ADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       282 g~~~~~~~~~~~A~~~~~~a~~~~~~~------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      |.+|...|++++|..+|+++++..+..      +.....+...+...++.++|...+++...
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999999999999999999998763322      33444445555666889999888776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=4e-16  Score=138.07  Aligned_cols=164  Identities=16%  Similarity=0.162  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHH
Q 019340          121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVK  192 (342)
Q Consensus       121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~  192 (342)
                      +++|+.+|.++            |.+|...|++++|+.+|+++++.    ++    +.++.++|.+|.  ..|++++|+.
T Consensus        33 ~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~   98 (292)
T 1qqe_A           33 FEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK--SGGNSVNAVD   98 (292)
T ss_dssp             HHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred             HHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence            55555555554            33455555666666666555533    22    345555566555  5555666666


Q ss_pred             HHHHHHHc----CC----HHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCC
Q 019340          193 LLYQASIA----GH----VRAQYQLALCLHRGRGVD-FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGL  255 (342)
Q Consensus       193 ~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~  255 (342)
                      +|+++++.    ++    ..++.++|.+|..    . +++++|+.+|++|++.    ++    ..++.++|.+|.. .| 
T Consensus        99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~----~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g-  172 (292)
T 1qqe_A           99 SLENAIQIFTHRGQFRRGANFKFELGEILEN----DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DG-  172 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-hC-
Confidence            66655542    22    2345556665554    3 4556666666665543    11    2345555665543 12 


Q ss_pred             cccHHHHHHHHHHHHHcC--CH-------HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc
Q 019340          256 PLSHRQARKWMKRAADCG--HG-------KAQLEHGLGLFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       256 ~~~~~~A~~~~~~a~~~~--~~-------~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                        ++++|+.+|+++++..  +.       .+++++|.++...|++++|+.+|++++++.+
T Consensus       173 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          173 --QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             --CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             --CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence              5666666666665531  11       1445566666666666666666666655433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.70  E-value=8.4e-16  Score=136.50  Aligned_cols=222  Identities=18%  Similarity=0.112  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------C
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------G  167 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~  167 (342)
                      ..++..|..+..    .+++++|+.+|+++++..  +    ..++..+|.+|...|++++|+.+++++++.        .
T Consensus         6 ~~l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (338)
T 3ro2_A            6 LELALEGERLCK----SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   81 (338)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence            456778998888    589999999999999863  4    467889999999999999999999998754        2


Q ss_pred             CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCC-----------------
Q 019340          168 DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFN-----------------  222 (342)
Q Consensus       168 ~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~-----------------  222 (342)
                      .+.++..+|.+|.  ..+++++|+.+|+++++.    ++    ..++..+|.+|..    .++                 
T Consensus        82 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           82 EAKASGNLGNTLK--VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHTSSSSSCC----CCHHH
T ss_pred             HHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----cCcccccchhhhhhhhhhhH
Confidence            3568899999999  889999999999998763    33    4588999999986    556                 


Q ss_pred             ---HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHH
Q 019340          223 ---LQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGL  283 (342)
Q Consensus       223 ---~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~  283 (342)
                         +++|+.+|++++..    +    ...++.++|.+|..    .+++++|+.+++++++.    ++    ..++.++|.
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  231 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN  231 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence               89999999998763    2    24578899999965    34999999999999864    33    347899999


Q ss_pred             HhhhcCCHHHHHHHHHHHHHcCcHH------HHHHHHHHHhhcChhcHHHHHHHHHhhhc
Q 019340          284 GLFTEGEMMKAVVYLELATRAGETA------ADHVKNVILQQLSATSRDRAMLVVDSWRA  337 (342)
Q Consensus       284 ~~~~~~~~~~A~~~~~~a~~~~~~~------a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  337 (342)
                      ++...|++++|..+|+++++..+..      +.........+...++.++|...+++...
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999998763221      33344444555566889999888776543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.69  E-value=3.1e-16  Score=131.77  Aligned_cols=162  Identities=15%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH----------------HHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN----------------LGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~----------------Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +.++..|..+...|++++|+.+|+++++.  +++.+++.                +|.+|.  ..+++++|+.+|+++++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK--KNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
Confidence            34444445554555555555555554433  33444444                666666  66666666666666655


Q ss_pred             --cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-
Q 019340          200 --AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-  274 (342)
Q Consensus       200 --~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-  274 (342)
                        ++++.+++++|.+|..    .+++++|+.+|+++++.  +++.+++++|.+|... | ..+...+...|+++....+ 
T Consensus        83 ~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  156 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT-A-EQEKKKLETDYKKLSSPTKM  156 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H-HHHHHHHHHHHC---CCCHH
T ss_pred             HCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHhCCCch
Confidence              3466666666666665    55666666666666654  4566777777666321 0 2245666677777665433 


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          275 GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      ..+++++|.++...|++++|+.+|++|+++.|.
T Consensus       157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            236678888888889999999999999888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=6.7e-15  Score=131.10  Aligned_cols=216  Identities=9%  Similarity=-0.020  Sum_probs=168.0

Q ss_pred             HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCC---CCcCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Q 019340           82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGR---GVRKNL-------DKALDSFLKGAA-R--GSTLAMVDAGLMYW  148 (342)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~---g~~~~~-------~~A~~~~~~A~~-~--~~~~a~~~lg~~~~  148 (342)
                      .+|...+.+.++..+.  ++.+++.+|.++....   ...+++       ++|+..|++|+. .  ++..++..+|.++.
T Consensus        33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5777788888877655  8888888898875300   001453       889999999988 4  47788899999999


Q ss_pred             cCCCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCH
Q 019340          149 EMDKKEAAISLYRQAAVL--GDPA-GQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNL  223 (342)
Q Consensus       149 ~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~  223 (342)
                      ..|++++|+..|+++++.  .++. ++.++|.++.  ..+++++|+..|+++++.  ....++...+.+...   ..+++
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~  185 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDK  185 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH--HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCH
Confidence            999999999999999876  4565 8889998888  788999999999998874  456666666655432   14678


Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHhhhcCCHHHHH
Q 019340          224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC------GHGKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      ++|+..|+++++.  +++.++..++.++.. .|   ++++|+.+|++++..      .....+..++..+...|++++|.
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~  261 (308)
T 2ond_A          186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC---CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999774  678888888888854 33   899999999999884      24567788888888899999999


Q ss_pred             HHHHHHHHcCcHH
Q 019340          296 VYLELATRAGETA  308 (342)
Q Consensus       296 ~~~~~a~~~~~~~  308 (342)
                      .+++++++..+.+
T Consensus       262 ~~~~~a~~~~p~~  274 (308)
T 2ond_A          262 KVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHHHTTTT
T ss_pred             HHHHHHHHHcccc
Confidence            9999999887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.69  E-value=5e-15  Score=135.66  Aligned_cols=220  Identities=13%  Similarity=0.064  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----C--
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----G--  167 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--  167 (342)
                      ..++.+|..+..    .+++++|+.+|++|...    +    .+.+++++|.+|...|++++|+.++++|++.    +  
T Consensus       102 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  177 (378)
T 3q15_A          102 YSLFFRGMYEFD----QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY  177 (378)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence            357778998888    58999999999999875    3    3568899999999999999999999999853    2  


Q ss_pred             ---CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-
Q 019340          168 ---DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE-  235 (342)
Q Consensus       168 ---~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~-  235 (342)
                         .+.++.++|.+|.  ..+++++|+.+|+++++.    +    ...++++||.+|..    .+++++|+.+|++|++ 
T Consensus       178 ~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYD--DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence               2568889999999  899999999999999873    2    35688999999987    7799999999999998 


Q ss_pred             ----C--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC---HHHHHHHHHHhhhcCC---HHHHHHHHH
Q 019340          236 ----G--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH---GKAQLEHGLGLFTEGE---MMKAVVYLE  299 (342)
Q Consensus       236 ----~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~---~~a~~~Lg~~~~~~~~---~~~A~~~~~  299 (342)
                          .  ..+.+++++|.+|.. .|   ++++|+.+++++++.    ++   ...+..|+.+|...++   +.+|+.+++
T Consensus       252 ~~~~~~~~~~~~~~~la~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          252 SREKVPDLLPKVLFGLSWTLCK-AG---QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHhhCChhHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                3  247789999999965 33   999999999999885    22   3456788999999998   888998888


Q ss_pred             HHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          300 LATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      +... .+........+...+...++.++|...+++..
T Consensus       328 ~~~~-~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          328 KKNL-HAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCCC-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7321 12222333344455556688888888777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.68  E-value=7.4e-16  Score=133.80  Aligned_cols=195  Identities=14%  Similarity=0.088  Sum_probs=149.7

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------G----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---  166 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---  166 (342)
                      .+.+++.+|.+|..    .+++++|+.+|+++++.      +    ...++..+|.+|...|++++|+.+|+++++.   
T Consensus        42 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           42 VATMLNILALVYRD----QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            46789999999999    58999999999999875      2    3567899999999999999999999999864   


Q ss_pred             -------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------C--CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340          167 -------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--------G--HVRAQYQLALCLHRGRGVDFNLQEAARW  229 (342)
Q Consensus       167 -------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~  229 (342)
                             ....++.++|.+|.  ..+++++|+.+|+++++.        .  ...++.++|.+|..    .+++++|+.+
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  191 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQ--NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETL  191 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence                   23578999999999  899999999999999875        2  35788999999987    7799999999


Q ss_pred             HHHHHHC-----------CCHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340          230 YLRAAEG-----------GYVRAMYNTSLCYSFGE--GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA  294 (342)
Q Consensus       230 ~~~A~~~-----------~~~~a~~~lg~~y~~g~--g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A  294 (342)
                      |+++++.           .....+..++.++..+.  .....+.++..+++.....  ....++..||.+|...|++++|
T Consensus       192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          192 YKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             HHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999863           23345666666664431  1233455555555544322  2356789999999999999999


Q ss_pred             HHHHHHHHHc
Q 019340          295 VVYLELATRA  304 (342)
Q Consensus       295 ~~~~~~a~~~  304 (342)
                      ..+|+++++.
T Consensus       272 ~~~~~~al~~  281 (283)
T 3edt_B          272 HTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.68  E-value=4.7e-15  Score=131.17  Aligned_cols=191  Identities=16%  Similarity=0.082  Sum_probs=153.8

Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHH
Q 019340          108 GKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAG  171 (342)
Q Consensus       108 g~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a  171 (342)
                      |.+|..    .+++++|+..|.+|++.    ++    +.++.++|.+|...|++++|+.+|++|++.    ++    ..+
T Consensus        44 ~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            667766    58999999999999885    33    467899999999999999999999999864    44    468


Q ss_pred             HHHHHHHHHcCCc-cCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CH-
Q 019340          172 QFNLGISYLQAQP-ANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YV-  239 (342)
Q Consensus       172 ~~~Lg~~~~~g~~-~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~-  239 (342)
                      +.++|.+|.  .. +++++|+.+|+++++.    ++    ..++.++|.+|..    .+++++|+.+|+++++..  +. 
T Consensus       120 ~~~lg~~~~--~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          120 KFELGEILE--NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHH--HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHH--HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHhcCCc
Confidence            899999999  75 9999999999999874    22    4678999999988    789999999999999853  21 


Q ss_pred             ------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC--HH-----HHHHHHHHhh--hcCCHHHHHHHHHHHHHc
Q 019340          240 ------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH--GK-----AQLEHGLGLF--TEGEMMKAVVYLELATRA  304 (342)
Q Consensus       240 ------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~-----a~~~Lg~~~~--~~~~~~~A~~~~~~a~~~  304 (342)
                            .++.++|.+|.. .|   ++++|+.+|+++++..+  ..     .+..|+..+.  +.+++++|+..|.+++.+
T Consensus       194 ~~~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLA-AT---DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHH-TT---CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence                  267899999965 33   99999999999987533  22     3455666664  467899999999999888


Q ss_pred             CcHHHHHH
Q 019340          305 GETAADHV  312 (342)
Q Consensus       305 ~~~~a~~~  312 (342)
                      ++......
T Consensus       270 ~~~~~~~~  277 (292)
T 1qqe_A          270 DKWKITIL  277 (292)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87665443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.68  E-value=1.7e-15  Score=131.35  Aligned_cols=180  Identities=12%  Similarity=0.062  Sum_probs=131.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GS---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL-----G  167 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~  167 (342)
                      ..++..++.+|..+..    .+++++|+..|+++++.  ++   +.+++.+|.+|...|++++|+..|+++++.     .
T Consensus        12 ~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           12 HSSPQEAFERAMEFYN----QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             CSSHHHHHHHHHHHHH----TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4578899999999998    58999999999999986  35   789999999999999999999999999875     2


Q ss_pred             CHHHHHHHHHHHHcCC--------ccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          168 DPAGQFNLGISYLQAQ--------PANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       168 ~~~a~~~Lg~~~~~g~--------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      .+.+++.+|.++.  .        .+++++|+.+|+++++.  +++.+...+..+...                   ...
T Consensus        88 ~~~a~~~lg~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-------------------~~~  146 (261)
T 3qky_A           88 VPQAEYERAMCYY--KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-------------------RAK  146 (261)
T ss_dssp             HHHHHHHHHHHHH--HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-------------------HHH
T ss_pred             hHHHHHHHHHHHH--HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-------------------HHH
Confidence            3789999999998  6        88999999999998874  344333222222110                   001


Q ss_pred             CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhc----------CCHHHHHHHHHHHH
Q 019340          238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTE----------GEMMKAVVYLELAT  302 (342)
Q Consensus       238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~----------~~~~~A~~~~~~a~  302 (342)
                      ....++.+|.+|.. .|   ++++|+.+|+++++..     .+.+++.+|.+|...          |++++|+.+|++++
T Consensus       147 ~~~~~~~la~~~~~-~g---~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~  222 (261)
T 3qky_A          147 LARKQYEAARLYER-RE---LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL  222 (261)
T ss_dssp             HHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence            12345677777754 22   7777777777776642     245677777777655          67777777777777


Q ss_pred             HcCc
Q 019340          303 RAGE  306 (342)
Q Consensus       303 ~~~~  306 (342)
                      +..|
T Consensus       223 ~~~p  226 (261)
T 3qky_A          223 QIFP  226 (261)
T ss_dssp             HHCT
T ss_pred             HHCC
Confidence            6643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.67  E-value=3.9e-14  Score=126.11  Aligned_cols=208  Identities=10%  Similarity=-0.080  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCH-------HHHHHHHHHHHh-C--CCHHHHHHHHHHHHcCC
Q 019340          123 KALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKK-------EAAISLYRQAAV-L--GDPAGQFNLGISYLQAQ  183 (342)
Q Consensus       123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~-------~~A~~~~~~a~~-~--~~~~a~~~Lg~~~~~g~  183 (342)
                      +|+..|++++..  +++.+++++|.++..       .|++       ++|+..|++|+. .  +++.++..+|.++.  .
T Consensus        34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~--~  111 (308)
T 2ond_A           34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE--S  111 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--h
Confidence            688899999885  699999999998863       5775       999999999997 3  67889999999999  8


Q ss_pred             ccCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCccc
Q 019340          184 PANAEEAVKLLYQASIA--GHVR-AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLS  258 (342)
Q Consensus       184 ~~~~~~A~~~~~~a~~~--~~~~-a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~  258 (342)
                      .+++++|...|+++++.  .++. ++.++|.++..    .+++++|+..|++|++..  ....+...+.+.....|   +
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~---~  184 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---D  184 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC---C
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC---C
Confidence            88999999999999985  4565 99999999986    678999999999999864  45555555555322234   9


Q ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc---Cc---HHHHHHHHHHHhhcChhcHHHHHH
Q 019340          259 HRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA---GE---TAADHVKNVILQQLSATSRDRAML  330 (342)
Q Consensus       259 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~---~~---~~a~~~~~~~~~~~~~~~~~~a~~  330 (342)
                      +++|+.+|+++++.  +++..+.++|.++...|++++|+.+|++++..   .+   ......+..+.  ...++.+.+..
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~--~~~g~~~~a~~  262 (308)
T 2ond_A          185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASILK  262 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH--HHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHcCCHHHHHH
Confidence            99999999999875  67899999999999999999999999999995   32   23333333333  34578899999


Q ss_pred             HHHhhhcCCCC
Q 019340          331 VVDSWRAMPSL  341 (342)
Q Consensus       331 ~~~~~~~~~~~  341 (342)
                      +.++..+..|.
T Consensus       263 ~~~~a~~~~p~  273 (308)
T 2ond_A          263 VEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHccc
Confidence            99888776664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=2.9e-15  Score=125.73  Aligned_cols=172  Identities=13%  Similarity=0.011  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHH----------------HHHHHhcCCCHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVD----------------AGLMYWEMDKKEAAISLYR  161 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~----------------lg~~~~~~~~~~~A~~~~~  161 (342)
                      .+..++..|..+..    .+++++|+.+|++++..+  ++.+++.                +|.+|...|++++|+.+|+
T Consensus         3 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIE----AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45667788888888    589999999999999874  6778888                9999999999999999999


Q ss_pred             HHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          162 QAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       162 ~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      ++++.  +++.+++++|.+|.  ..+++++|+.+|+++++  ++++.+++++|.+|....  ..+...+...|.++....
T Consensus        79 ~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~--~~~~~~~~~~~~~~~~~~  154 (208)
T 3urz_A           79 ELLQKAPNNVDCLEACAEMQV--CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA--EQEKKKLETDYKKLSSPT  154 (208)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHC---CCC
T ss_pred             HHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhCCC
Confidence            99865  78999999999999  89999999999999887  568999999999986411  234567778888876554


Q ss_pred             C-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 019340          238 Y-VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-GKAQLEHGL  283 (342)
Q Consensus       238 ~-~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~  283 (342)
                      . ..+++++|.++..    .+++++|+.+|+++++..+ ..+...|..
T Consensus       155 ~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          155 KMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            3 2467888888865    4499999999999998744 444444444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.66  E-value=1.1e-14  Score=123.49  Aligned_cols=191  Identities=14%  Similarity=0.064  Sum_probs=152.6

Q ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHH
Q 019340          134 RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQ  208 (342)
Q Consensus       134 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  208 (342)
                      ..++.+++.+|.++...|++++|+.+|+++++.   .++.+++++|.++.  ..+++++|+.+|+++++.  .++.+++.
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~   81 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD--NIKKYKEAADYFDIAIKKNYNLANAYIG   81 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH--HhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence            457899999999999999999999999999864   57889999999999  899999999999999885  47899999


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----H
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAEG--GYV-------RAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----G  275 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~-------~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~  275 (342)
                      +|.+|..    .+++++|+.+|+++++.  .++       .+++++|.++..    .+++++|+.+|+++++.++    +
T Consensus        82 l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~  153 (228)
T 4i17_A           82 KSAAYRD----MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSKKWKT  153 (228)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCCcccH
Confidence            9999998    78999999999999986  455       669999999965    3399999999999998754    4


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .+++++|.+|...|     ..++.++...+..+..........  ..+..++|...+++..+..|.
T Consensus       154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          154 DALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEKAK--ADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCC
Confidence            78899999997654     445566666543333333222222  235567788877777766664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=8.2e-15  Score=129.21  Aligned_cols=227  Identities=16%  Similarity=0.086  Sum_probs=174.7

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL---  166 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---  166 (342)
                      .+.+++.+|.+|..    .+++++|+.+|+++++.       .   ...++..+|.+|...|++++|+.+|+++++.   
T Consensus        26 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           26 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            67899999999998    58999999999999983       2   4567899999999999999999999999864   


Q ss_pred             -------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340          167 -------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARW  229 (342)
Q Consensus       167 -------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~  229 (342)
                             ....++.++|.+|.  ..+++++|+.+|+++++.          ....++.++|.+|..    .+++++|+.+
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~  175 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYY  175 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHH
Confidence                   23578899999999  899999999999998864          245778999999988    7899999999


Q ss_pred             HHHHHHC--------C--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------------CHHHHHHHH
Q 019340          230 YLRAAEG--------G--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------------HGKAQLEHG  282 (342)
Q Consensus       230 ~~~A~~~--------~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg  282 (342)
                      |+++++.        .  ...+++.+|.+|..    .+++++|+.+|+++++..                 ....+..++
T Consensus       176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
T 3nf1_A          176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLK----QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK  251 (311)
T ss_dssp             HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence            9999875        2  34578899999965    349999999999998631                 122334555


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          283 LGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      ..+...+.+.+|..+++.+....+..+.....+...+...++.++|...+++..+..|
T Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            5556677888889999999988887777777777777888999999999988766544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=1.4e-14  Score=117.51  Aligned_cols=157  Identities=17%  Similarity=0.136  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      +++.+|.++...|++++|+.+|+++++.  .++.+++.+|.++.  ..+++++|+.+|+++++.  .++.++..+|.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV--KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3444455555555555555555554432  34455555555555  445555555555554442  34455555555554


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340          215 RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGE  290 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~  290 (342)
                      .    .+++++|+.+|++++..  .++.+++.+|.+|.. .   +++++|+.+|++++..  .++.++..+|.++...|+
T Consensus        88 ~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A           88 Q----VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-L---GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             H----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             H----hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-c---CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence            4    44555555555555443  345566666666643 2   2677777777777664  456777888888888888


Q ss_pred             HHHHHHHHHHHHHcC
Q 019340          291 MMKAVVYLELATRAG  305 (342)
Q Consensus       291 ~~~A~~~~~~a~~~~  305 (342)
                      +++|..+|+++++..
T Consensus       160 ~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          160 HEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC
Confidence            888888888887654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.64  E-value=3.4e-15  Score=147.40  Aligned_cols=164  Identities=15%  Similarity=0.077  Sum_probs=109.3

Q ss_pred             cCCHHHHHHHHHHHH--------hC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCcc
Q 019340          118 RKNLDKALDSFLKGA--------AR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPA  185 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~--------~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~  185 (342)
                      .+++++|++.|++++        +.  +++.+++.+|.+|...|++++|+..|+++++  .+++.+++++|.+|.  ..+
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g  481 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL--LTG  481 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHT
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HcC
Confidence            357777777777777        43  3566777777777777777777777777764  367777777777777  677


Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          186 NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       186 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      ++++|+..|+++++.  +++.+++++|.+|..    .+++++ +.+|++|++.  +++.+++++|.+|.. .|   ++++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-~g---~~~~  552 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-EG---DRVG  552 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-cC---CHHH
Confidence            777777777776653  567777777777766    556666 7777777654  466777777777754 22   7777


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~  292 (342)
                      |+.+|+++++.  ++..+++++|.++...++.+
T Consensus       553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~  585 (681)
T 2pzi_A          553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS  585 (681)
T ss_dssp             HHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred             HHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence            77777777655  34666777777776655533

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1.4e-15  Score=150.18  Aligned_cols=139  Identities=14%  Similarity=0.048  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|.+|..    .+++++|+..|+++++.  +++.+++++|.+|...|++++|+..|+++++.  +++.+++++
T Consensus       432 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          432 SVELPLMEVRALLD----LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             CSHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             chhHHHHHHHHHHh----cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34444444444444    34444444444444442  34444444444444444444444444444432  344444444


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      |.+|.  ..+++++ +.+|+++++  ++++.+++++|.+|..    .+++++|+.+|++|++.  .+..+++++|.++
T Consensus       508 g~~~~--~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          508 AATAE--LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHH--HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHH--HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            44444  4444444 444444443  2344444444444444    34444444444444433  2344444444444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.63  E-value=1e-14  Score=126.41  Aligned_cols=188  Identities=13%  Similarity=0.010  Sum_probs=141.2

Q ss_pred             hCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CC
Q 019340          133 ARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GH  202 (342)
Q Consensus       133 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~  202 (342)
                      ...++..++.+|..+...|++++|+..|+++++.  ++   +.+++.+|.+|.  ..+++++|+.+|+++++.     ..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY--QNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHHCCCCchh
Confidence            3467889999999999999999999999999875  55   889999999999  889999999999999885     23


Q ss_pred             HHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340          203 VRAQYQLALCLHRGR----GVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK  276 (342)
Q Consensus       203 ~~a~~~lg~~~~~g~----~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  276 (342)
                      +.+++.+|.++....    ...+++++|+.+|+++++..  +..+...+..+..                   +......
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~-------------------~~~~~~~  149 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE-------------------LRAKLAR  149 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-------------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH-------------------HHHHHHH
Confidence            678999999986410    01357888888888887642  2222222222211                   0111234


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHcCc-----HHHHHHHHHHHhhc--------ChhcHHHHHHHHHhhhcCCCC
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRAGE-----TAADHVKNVILQQL--------SATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~-----~~a~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .++.+|.+|...|++++|+.+|+++++..+     +++...++.++..+        ..++.++|...++++.+..|.
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence            479999999999999999999999998754     35666666666544        348889999999999887775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.62  E-value=2.1e-15  Score=119.95  Aligned_cols=133  Identities=15%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             HHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC
Q 019340          107 WGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQA  182 (342)
Q Consensus       107 lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g  182 (342)
                      ||.++..    ++++++|+..|++++...  ++.+++.+|.+|...|++++|+.+|+++++.  +++.+++++|.+|.  
T Consensus         3 LG~~~~~----~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--   76 (150)
T 4ga2_A            3 LGSMRRS----KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE--   76 (150)
T ss_dssp             ----CCC----HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--
T ss_pred             hHHHHHH----cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Confidence            4555544    455666666666655542  3444555666666666666666666665533  45556666666665  


Q ss_pred             CccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHHHC--CCHHHHHHHHHHH
Q 019340          183 QPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARW-YLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       183 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~-~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      ..+++++|+.+|+++++  ++++.+++++|.+|..    .+++++|... +++|++.  +++.++...+.++
T Consensus        77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            55556666666665554  2355555555555544    3333333332 3455443  3444444444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.61  E-value=2.1e-15  Score=119.95  Aligned_cols=139  Identities=19%  Similarity=0.109  Sum_probs=112.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCC
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGR  217 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~  217 (342)
                      .||.++...|++++|+..+++++..  .++.+++.||.+|.  ..+++++|+.+|+++++  ++++.+++++|.+|..  
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--   77 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY--EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--   77 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence            4788998999999999999999866  56778899999999  88999999999999877  4689999999999988  


Q ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHHHc--CCHHHHHHHHHHhhhcCC
Q 019340          218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARK-WMKRAADC--GHGKAQLEHGLGLFTEGE  290 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~Lg~~~~~~~~  290 (342)
                        .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++|.. ++++|++.  +++.++...+.++...|+
T Consensus        78 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           78 --EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK----NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             --cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence              77999999999999886  578999999999865    226666554 56888775  678888888888887775

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.59  E-value=1.1e-13  Score=112.17  Aligned_cols=158  Identities=16%  Similarity=0.139  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +.+++.+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++...|++++|+.+++++++.  .++.++..+|
T Consensus         8 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   83 (186)
T 3as5_A            8 QVYYRDKGISHAK----AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5677889999988    58999999999999876  47899999999999999999999999999865  7799999999


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG  252 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g  252 (342)
                      .++.  ..+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|++++..  .++.+++.+|.+|.. 
T Consensus        84 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-  156 (186)
T 3as5_A           84 LTYV--QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-  156 (186)
T ss_dssp             HHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHH--HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-
Confidence            9999  889999999999998874  688999999999987    77999999999999886  578899999999965 


Q ss_pred             CCCcccHHHHHHHHHHHHHc
Q 019340          253 EGLPLSHRQARKWMKRAADC  272 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~~  272 (342)
                      .|   ++++|+.+++++++.
T Consensus       157 ~~---~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          157 MG---RHEEALPHFKKANEL  173 (186)
T ss_dssp             TT---CHHHHHHHHHHHHHH
T ss_pred             cC---CHHHHHHHHHHHHHc
Confidence            33   999999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.58  E-value=1.9e-13  Score=121.70  Aligned_cols=191  Identities=15%  Similarity=0.106  Sum_probs=140.7

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      ..+++.+|..++.+..+.....           ++    +..++++.|+.+|.++            |.+|...|++++|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~-----------~~----~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS-----------FM----KWKPDYDSAASEYAKA------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC-----------SS----SCSCCHHHHHHHHHHH------------HHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc-----------cc----CCCCCHHHHHHHHHHH------------HHHHHHcCCHHHH
Confidence            4577778877777666655420           01    1236888888888875            5677788888888


Q ss_pred             HHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCC
Q 019340          157 ISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVD  220 (342)
Q Consensus       157 ~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~  220 (342)
                      +.+|.++++.    ++    ..++.++|.+|.  ..+++++|+.+|+++++.    ++    ..++.++|.+|..     
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~--~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-----  128 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK--DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-----  128 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-----
Confidence            8888888754    33    457788888888  778888888888888763    32    4577888888864     


Q ss_pred             CCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HHHHHHHHHH
Q 019340          221 FNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GKAQLEHGLG  284 (342)
Q Consensus       221 ~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~  284 (342)
                      +++++|+.+|++|++.    ++    ..++.++|.+|.. .|   ++++|+.+|++++..    +.    ..++.++|.+
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~  204 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQ---KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV  204 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence            4788888888888864    22    4678888888865 33   889999999988764    22    3467788888


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCc
Q 019340          285 LFTEGEMMKAVVYLELATRAGE  306 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~  306 (342)
                      +...|++++|+.+|++++ ..+
T Consensus       205 ~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          205 QLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHT-TST
T ss_pred             HHHcCCHHHHHHHHHHHh-CCC
Confidence            888899999999999988 643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=1.5e-12  Score=118.49  Aligned_cols=248  Identities=13%  Similarity=0.027  Sum_probs=176.2

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCH----HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CCH----HH
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREA----MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GST----LA  139 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~----~a  139 (342)
                      +...+..|++.+|...+.+.+...+. ++.    .++..+|.+|..    .+++++|+.++++++..    +++    .+
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            33445678888888888777776543 222    367888888887    58999999999998874    333    34


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-------C
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL----G------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-------H  202 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-------~  202 (342)
                      +.++|.++...|++++|+.+|+++++.    +      ...++.++|.++.  ..|++++|..+++++++..       .
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW--AWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            678999999999999999999998753    1      2356778899988  8889999999999987642       2


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC-HHHHH----HHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY-VRAMY----NTSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~-~~a~~----~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      ..++..+|.++..    .+++++|..+++++...    +. .....    .++.++.. .|   ++++|..+++++....
T Consensus       174 ~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~~~A~~~~~~a~~~~  245 (373)
T 1hz4_A          174 LQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM-TG---DKAAAANWLRHTAKPE  245 (373)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-CC---CHHHHHHHHHhCCCCC
Confidence            4678889998887    67899999999998753    22 11111    23333433 33   8999999999887653


Q ss_pred             C------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc----H----HHHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          274 H------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE----T----AADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       274 ~------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~----~----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      .      ...+..+|.++...|++++|..+++++++...    .    .+...++  ..+...++.++|...+++..
T Consensus       246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN--QLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH--HHHHHhCCHHHHHHHHHHHH
Confidence            2      23567889999999999999999998876521    1    2333333  33344567777777666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.57  E-value=3.3e-14  Score=123.29  Aligned_cols=211  Identities=15%  Similarity=0.059  Sum_probs=156.2

Q ss_pred             cCCHHHHHHHHHHHHhC-------C---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----------CCHHHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR-------G---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGI  177 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~-------~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~  177 (342)
                      .+++++|+.+|++|++.       +   .+.++..+|.+|...|++++|+.+|+++++.          ..+.++.++|.
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            57888888888888773       2   4567899999999999999999999999854          23568999999


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------C--
Q 019340          178 SYLQAQPANAEEAVKLLYQASIA----------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------G--  237 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--------~--  237 (342)
                      +|.  ..+++++|+.+|+++++.          ....++.++|.+|..    .+++++|+.+|+++++.        .  
T Consensus        94 ~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  167 (283)
T 3edt_B           94 LYG--KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEIYATRLGPDDPN  167 (283)
T ss_dssp             HHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHH--HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            999  899999999999998864          246788999999987    77999999999999875        2  


Q ss_pred             CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHhhhcC------CHHHHHHHHHH
Q 019340          238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----------HGKAQLEHGLGLFTEG------EMMKAVVYLEL  300 (342)
Q Consensus       238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----------~~~a~~~Lg~~~~~~~------~~~~A~~~~~~  300 (342)
                      ...++.++|.+|..    .+++++|+.+|++++...           ....+..++..+...+      .+.++..+++.
T Consensus       168 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (283)
T 3edt_B          168 VAKTKNNLASCYLK----QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA  243 (283)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence            35678899999965    339999999999998741           2334556666555433      34455555554


Q ss_pred             HHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcC
Q 019340          301 ATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAM  338 (342)
Q Consensus       301 a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  338 (342)
                      .....+..+.....+...+...++.++|...+++..+.
T Consensus       244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44444555555555666666779999999998887653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=3.3e-13  Score=114.46  Aligned_cols=177  Identities=11%  Similarity=0.005  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP---  169 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~---  169 (342)
                      .+..++.+|..+..    .+++++|+..|++++...  +   ..+++.+|.+|...|++++|+..|+++++.  +++   
T Consensus         3 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~   78 (225)
T 2yhc_A            3 PPNEIYATAQQKLQ----DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID   78 (225)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence            46788888988888    589999999999988742  2   468889999999999999999999998864  333   


Q ss_pred             HHHHHHHHHHHcC----------------CccCHHHHHHHHHHHHHc--CCHH---HHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          170 AGQFNLGISYLQA----------------QPANAEEAVKLLYQASIA--GHVR---AQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       170 ~a~~~Lg~~~~~g----------------~~~~~~~A~~~~~~a~~~--~~~~---a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                      .+++.+|.++...                ..+++++|+..|+++++.  +++.   +...++.+...             
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-------------  145 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-------------  145 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------------
Confidence            4888888888620                134566666666666553  2222   22222222210             


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--C---HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          229 WYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--H---GKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       229 ~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                               .....+.+|.+|..    .+++.+|+..|+++++..  +   ..+++.+|.+|...|++++|+.+++++..
T Consensus       146 ---------~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          146 ---------LAKYEYSVAEYYTE----RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             ---------HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                     01233567777754    338888888888888762  3   25778888888888888888888887776


Q ss_pred             cCc
Q 019340          304 AGE  306 (342)
Q Consensus       304 ~~~  306 (342)
                      .++
T Consensus       213 ~~~  215 (225)
T 2yhc_A          213 NSS  215 (225)
T ss_dssp             CCS
T ss_pred             hCC
Confidence            654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.54  E-value=5.4e-14  Score=125.24  Aligned_cols=192  Identities=16%  Similarity=0.065  Sum_probs=153.0

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      +++++|.+++++|......      + ++...+++++|+.+|.++            |.+|.  ..+++++|+.+|++++
T Consensus         5 ~~~~eA~~~~~~a~k~~~~------~-~~~~~~~~~~A~~~~~~a------------~~~~~--~~g~~~~A~~~~~~al   63 (307)
T 2ifu_A            5 QKISEAHEHIAKAEKYLKT------S-FMKWKPDYDSAASEYAKA------------AVAFK--NAKQLEQAKDAYLQEA   63 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHCC------C-SSSCSCCHHHHHHHHHHH------------HHHHH--HTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHccc------c-ccCCCCCHHHHHHHHHHH------------HHHHH--HcCCHHHHHHHHHHHH
Confidence            5788999999998763211      0 122268999999999987            55777  7899999999999988


Q ss_pred             Hc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHH
Q 019340          199 IA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQA  262 (342)
Q Consensus       199 ~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A  262 (342)
                      +.    ++    ..++.++|.+|..    .+++++|+.+|++|++.    ++    ..++.++|.+|..  |   ++++|
T Consensus        64 ~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g---~~~~A  134 (307)
T 2ifu_A           64 EAHANNRSLFHAAKAFEQAGMMLKD----LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--L---DLSKA  134 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH----TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--T---CHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--C---CHHHH
Confidence            74    23    5688999999987    67899999999999875    33    4678999999965  5   99999


Q ss_pred             HHHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc------HHHHHHHHHHHhhcChhcHHHH
Q 019340          263 RKWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAGE------TAADHVKNVILQQLSATSRDRA  328 (342)
Q Consensus       263 ~~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~~~~~~~~~~~~~~~~a  328 (342)
                      +.+|++|++.    ++    ..++.++|.+|...|++++|+.+|+++++..+      ..+...+..+..++..++.++|
T Consensus       135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  214 (307)
T 2ifu_A          135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA  214 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999875    22    46789999999999999999999999998632      2234556666666777899999


Q ss_pred             HHHHHhhhcCCCC
Q 019340          329 MLVVDSWRAMPSL  341 (342)
Q Consensus       329 ~~~~~~~~~~~~~  341 (342)
                      ...+++.. ..|.
T Consensus       215 ~~~~~~al-~~p~  226 (307)
T 2ifu_A          215 QKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHT-TSTT
T ss_pred             HHHHHHHh-CCCC
Confidence            99999988 6653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=2e-13  Score=105.02  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+.++..+|..|..    .+++++|+.+|++|++.  .++.+++++|.+|...|++++|+..|+++++.  .++.+++++
T Consensus        12 ~a~~~~~~G~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A           12 LAQEEKNKGNEYFK----KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            45677778888887    57888888888888875  47788888888888888888888888888754  678888888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCL  213 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~  213 (342)
                      |.+|.  ..+++++|+.+|+++++  +++++++..|+.|+
T Consensus        88 g~~~~--~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           88 AACLV--AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHH--HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            88888  78888888888888776  45788888888775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=4.3e-12  Score=115.46  Aligned_cols=221  Identities=12%  Similarity=-0.055  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CH----HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH-
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---ST----LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP-  169 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~----~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~-  169 (342)
                      .+...+|.++..    .+++++|+.++++++...   +.    .++..+|.++...|++++|+.++++++..    +++ 
T Consensus        15 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   90 (373)
T 1hz4_A           15 EFNALRAQVAIN----DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   90 (373)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence            456677888877    589999999999999852   33    26789999999999999999999998853    444 


Q ss_pred             ---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          170 ---AGQFNLGISYLQAQPANAEEAVKLLYQASIA----G------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       170 ---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                         .++.++|.++.  ..|++++|+.+|+++++.    +      ...++.++|.++..    .+++++|..+++++++.
T Consensus        91 ~~~~~~~~la~~~~--~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           91 YALWSLIQQSEILF--AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV  164 (373)
T ss_dssp             HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence               45788999999  899999999999998763    1      24567889999987    77999999999999875


Q ss_pred             C-------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC-HHHH----HHHHHHhhhcCCHHHHHHHHHH
Q 019340          237 G-------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH-GKAQ----LEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       237 ~-------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~-~~a~----~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                      .       ...++.++|.++..    .+++++|..+++++...    +. ....    ..++.++...|++++|..++++
T Consensus       165 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  240 (373)
T 1hz4_A          165 LSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  240 (373)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            2       24678899999865    33999999999999764    22 1111    1344568899999999999999


Q ss_pred             HHHcCcHH----HHHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          301 ATRAGETA----ADHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       301 a~~~~~~~----a~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                      +++..+..    ...........+..++.++|...+++..
T Consensus       241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            98764321    1122333344455578888887776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.50  E-value=1.5e-11  Score=125.54  Aligned_cols=211  Identities=11%  Similarity=0.010  Sum_probs=133.1

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLGI  177 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~  177 (342)
                      ..+..++.+|..+..    .+++++|++.|.+|   ++++++.++|.++...|++++|+++|..|.+.. ++.....+|.
T Consensus      1103 n~p~vWsqLAKAql~----~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred             CCHHHHHHHHHHHHh----CCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence            456777777877777    37788888888775   777777778888877788888888887766442 2222333444


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc
Q 019340          178 SYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPL  257 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~  257 (342)
                      +|.  ..+++++ ++.|   ++..+...+..+|.+++.    .+++++|..+|.+|      .-|..++.+|..- |   
T Consensus      1176 aYA--Kl~rlee-le~f---I~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA------~ny~rLA~tLvkL-g--- 1235 (1630)
T 1xi4_A         1176 ALA--KTNRLAE-LEEF---INGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV------SNFGRLASTLVHL-G--- 1235 (1630)
T ss_pred             HHH--hhcCHHH-HHHH---HhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh------hHHHHHHHHHHHh-C---
Confidence            444  3333332 2222   122334455566666665    55666666666664      3555566665431 2   


Q ss_pred             cHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH-
Q 019340          258 SHRQARKWMKRAADC---------------------------GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAA-  309 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~---------------------------~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a-  309 (342)
                      ++++|++.+++|.+.                           .+++-+..++..|...|.+++|+.+++.++.+++... 
T Consensus      1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A         1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence            566666666555221                           2455666888888999999999999999988865443 


Q ss_pred             -HHHHHHHHhhcChhcHHHHHHHHHhhh
Q 019340          310 -DHVKNVILQQLSATSRDRAMLVVDSWR  336 (342)
Q Consensus       310 -~~~~~~~~~~~~~~~~~~a~~~~~~~~  336 (342)
                       .+.++.+...-..+...++.+++..-.
T Consensus      1316 mftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A         1316 MFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence             444777777777777777766554433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=3.6e-13  Score=130.03  Aligned_cols=147  Identities=18%  Similarity=-0.005  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLL  194 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~  194 (342)
                      +++++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|+++++.  +++.+++++|.+|.  ..+++++|+.+|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW--TQQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence            5777788888877765  46777777888877778888888888877765  56777777777777  677777777777


Q ss_pred             HHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          195 YQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       195 ~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      +++++.  +++.+++++|.+|..    .+++++|+.+|+++++.  ++..++.++|.+|.... -.+++++|+.+|++++
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALED----AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCTTHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHH
Confidence            777663  466677777777765    55666666666666554  34555666666654320 0025666666666655


Q ss_pred             Hc
Q 019340          271 DC  272 (342)
Q Consensus       271 ~~  272 (342)
                      +.
T Consensus       156 ~~  157 (568)
T 2vsy_A          156 AQ  157 (568)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.49  E-value=6.7e-13  Score=102.10  Aligned_cols=108  Identities=15%  Similarity=0.076  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      .+.++.++|..|+..|++++|+.+|+++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT--KLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH--hhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            3566778899999999999999999998754  77889999999998  888999999999988774  57888888888


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      +|..    .+++++|+.+|+++++.  ++..++.+|+.++
T Consensus        90 ~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           90 CLVA----MREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHH----CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            8887    67888888888888775  5777888887764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.47  E-value=1.3e-12  Score=126.12  Aligned_cols=180  Identities=16%  Similarity=0.025  Sum_probs=130.5

Q ss_pred             ChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHH
Q 019340           78 LPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEA  155 (342)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~  155 (342)
                      .+++.+|...+.+..+..+.  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELG----MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE   75 (568)
T ss_dssp             -------------------C--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            46788888888777766544  78999999999998    58999999999999987  478999999999999999999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      |+.+|+++++.  +++.+++++|.+|.  ..+++++|+.+|+++++.  +++.++.++|.++..-. ..+++++|+..|+
T Consensus        76 A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~g~~~~A~~~~~  152 (568)
T 2vsy_A           76 AAVLLQQASDAAPEHPGIALWLGHALE--DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC-DWRALDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh-ccccHHHHHHHHH
Confidence            99999999865  78999999999999  889999999999998874  58999999999998710 0178999999999


Q ss_pred             HHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          232 RAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       232 ~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      ++++.+  +..++..++    . .........+..|..+...
T Consensus       153 ~al~~~p~~~~~~~~l~----~-~~~~~~~~~~~~~~~~~~~  189 (568)
T 2vsy_A          153 AAVAQGVGAVEPFAFLS----E-DASAAEQLACARTRAQAIA  189 (568)
T ss_dssp             HHHHHTCCCSCHHHHTT----S-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcccChHHHhC----C-CCHHHHHHHHHHHHHhccC
Confidence            998864  555666665    1 1112234444555554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.47  E-value=2.8e-13  Score=110.30  Aligned_cols=156  Identities=8%  Similarity=-0.028  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhc
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLHR  215 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~  215 (342)
                      ..+.+|..+...|++++|+..|+++++  ++++.+++.+|.++.  ..|++++|+.+|++++... ++.....++.+...
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL--ETKQFELAQELLATIPLEYQDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH--HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence            345566666666666666666666543  366666666666666  5666666666666654432 44444444433221


Q ss_pred             CCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcC
Q 019340          216 GRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEG  289 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~  289 (342)
                      +.   .+..+|+..|+++++.  +++.+++++|.++.. .|   ++++|+.+|+++++..+    ..++.+||.++...|
T Consensus        86 ~~---~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g---~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A           86 QQ---AAESPELKRLEQELAANPDNFELACELAVQYNQ-VG---RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HH---HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             hh---cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc---cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            10   0112356777777654  467777777777754 22   78888888888776532    457788888888888


Q ss_pred             CHHHHHHHHHHHHH
Q 019340          290 EMMKAVVYLELATR  303 (342)
Q Consensus       290 ~~~~A~~~~~~a~~  303 (342)
                      +.++|+.+|++++.
T Consensus       159 ~~~~A~~~y~~al~  172 (176)
T 2r5s_A          159 QGNAIASKYRRQLY  172 (176)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888887763

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.47  E-value=7.7e-13  Score=116.63  Aligned_cols=172  Identities=8%  Similarity=-0.062  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          121 LDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       121 ~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      .+.-..++.... .++.+.++.+|..+...|++++|+..|+++++  ++++.+++.||.++.  ..|++++|+.+|++++
T Consensus       102 ~~~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~--~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          102 EEAIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI--ALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--HTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH--HCCCHHHHHHHHHhCc
Confidence            333444444433 56788899999999999999999999999875  488999999999999  8899999999999976


Q ss_pred             Hc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019340          199 IA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--  272 (342)
Q Consensus       199 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  272 (342)
                      ..  +........+..+..    .++..+|+..|++++..  +++.+++++|.+|... |   ++++|+..|++++..  
T Consensus       179 ~~~p~~~~~~~~~~~~l~~----~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g---~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          179 LQDQDTRYQGLVAQIELLX----QAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-G---RNEEALELLFGHLRXDL  250 (287)
T ss_dssp             GGGCSHHHHHHHHHHHHHH----HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHCT
T ss_pred             hhhcchHHHHHHHHHHHHh----hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-c---cHHHHHHHHHHHHhccc
Confidence            53  334445555555544    33566789999998875  6889999999999653 3   999999999999886  


Q ss_pred             CC--HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          273 GH--GKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       273 ~~--~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      ++  ..++.+||.++...|+.++|..+|++++.
T Consensus       251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            33  67899999999999999999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.46  E-value=3.5e-12  Score=122.03  Aligned_cols=208  Identities=10%  Similarity=-0.068  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHHHh---CCCHHHHHHHHHHHHcC
Q 019340          122 DKALDSFLKGAAR--GSTLAMVDAGLMYWE-------MDKKE-------AAISLYRQAAV---LGDPAGQFNLGISYLQA  182 (342)
Q Consensus       122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~-------~~~~~-------~A~~~~~~a~~---~~~~~a~~~Lg~~~~~g  182 (342)
                      ++++..|++|+..  +++.+++.+|.++..       .|+++       +|+..|++|+.   ++++..++.+|.++.  
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~--  332 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE--  332 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH--
Confidence            4788999999985  689999999999985       78876       99999999986   377999999999998  


Q ss_pred             CccCHHHHHHHHHHHHHcC--CH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcc
Q 019340          183 QPANAEEAVKLLYQASIAG--HV-RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPL  257 (342)
Q Consensus       183 ~~~~~~~A~~~~~~a~~~~--~~-~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~  257 (342)
                      ..+++++|...|+++++..  ++ .++..+|.++..    .+++++|...|++|++..  ....+...+.+.....|   
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~---  405 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK---  405 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC---
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC---
Confidence            7889999999999999854  44 589999998876    567999999999999864  33444444544222233   


Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HH----HHHHHHHHHhhcChhcHHHHH
Q 019340          258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TA----ADHVKNVILQQLSATSRDRAM  329 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~----a~~~~~~~~~~~~~~~~~~a~  329 (342)
                      ++++|+.+|+++++.  +++..+..++.++...|++++|..+|++++...+  ++    .......+.  ...++.+.+.
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e--~~~G~~~~~~  483 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASIL  483 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH--HHSSCHHHHH
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH--HHcCCHHHHH
Confidence            899999999999876  6789999999999999999999999999998742  22    332222232  2346777788


Q ss_pred             HHHHhhhcCCC
Q 019340          330 LVVDSWRAMPS  340 (342)
Q Consensus       330 ~~~~~~~~~~~  340 (342)
                      .+.++.++..|
T Consensus       484 ~~~~r~~~~~p  494 (530)
T 2ooe_A          484 KVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHHHTH
T ss_pred             HHHHHHHHHCc
Confidence            77777665444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.45  E-value=2.8e-12  Score=108.70  Aligned_cols=181  Identities=12%  Similarity=-0.068  Sum_probs=129.9

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH---HH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHV---RA  205 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~---~a  205 (342)
                      .+.+++.+|..+...|++++|+..|+++++.  ++   +.+++.+|.+|.  ..+++++|+..|+++++.  +++   .+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~--~~~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            5678999999999999999999999999864  33   479999999999  899999999999999874  333   58


Q ss_pred             HHHHHHHHhcCC--------------CCCCCHHHHHHHHHHHHHCC--CHHH---HHHHHHHHHcCCCCcccHHHHHHHH
Q 019340          206 QYQLALCLHRGR--------------GVDFNLQEAARWYLRAAEGG--YVRA---MYNTSLCYSFGEGLPLSHRQARKWM  266 (342)
Q Consensus       206 ~~~lg~~~~~g~--------------~~~~~~~~A~~~~~~A~~~~--~~~a---~~~lg~~y~~g~g~~~~~~~A~~~~  266 (342)
                      ++.+|.++....              ...+++++|+..|+++++..  +..+   ...++.+..                
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~----------------  144 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD----------------  144 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH----------------
Confidence            999999986410              00234555555555555431  2111   111111110                


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH-----HHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          267 KRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET-----AADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       267 ~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                            ......+.+|.+|...|++++|+..|+++++..+.     ++...++.+.  ...++.++|+...+.+...+|.
T Consensus       145 ------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~--~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          145 ------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY--RQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             ------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHCCSC
T ss_pred             ------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhCCC
Confidence                  00123367899999999999999999999988532     3455555444  5559999999999999888876


Q ss_pred             C
Q 019340          342 H  342 (342)
Q Consensus       342 ~  342 (342)
                      +
T Consensus       217 ~  217 (225)
T 2yhc_A          217 T  217 (225)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=1.7e-11  Score=108.16  Aligned_cols=154  Identities=11%  Similarity=0.030  Sum_probs=94.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCC--CH------HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--------CHH
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVLG--DP------AGQFNLGISYLQAQPANAEEAVKLLYQASIAG--------HVR  204 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~------~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--------~~~  204 (342)
                      ...+..+...|++++|+.+++++++..  ..      ..++.+|.++.  ..+++++|+.+|+++++..        ...
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344555555566666666665555431  11      23344555555  5556666666666665421        134


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--
Q 019340          205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--  273 (342)
Q Consensus       205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--  273 (342)
                      +++++|.+|..    .+++++|+.+|++|++.     ++    ..+++++|.+|..    .+++++|+.+|+++++..  
T Consensus       157 ~~~~lg~~y~~----~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          157 IENAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHHHHh
Confidence            56666666665    55666666666666521     11    2567777777754    227888888888776531  


Q ss_pred             ------CHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHc
Q 019340          274 ------HGKAQLEHGLGLFTEGEMMKA-VVYLELATRA  304 (342)
Q Consensus       274 ------~~~a~~~Lg~~~~~~~~~~~A-~~~~~~a~~~  304 (342)
                            ...+++++|.+|...|++++| ..+|++|+..
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                  167788999999999999999 8889988754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.42  E-value=4.7e-11  Score=121.93  Aligned_cols=199  Identities=17%  Similarity=0.086  Sum_probs=150.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      .+++++|++++++.   +.+.+|+++|..+...|++++|+..|.+|   ++++++..+|.++.  ..+++++|+++|..+
T Consensus      1089 i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~--~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1089 IGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAAN--TSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence            36777788777754   67899999999999999999999999887   89999999999999  889999999999998


Q ss_pred             HHcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHH
Q 019340          198 SIAG-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGK  276 (342)
Q Consensus       198 ~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~  276 (342)
                      .+.. .+.+...+|.+|..    .+++++ ++.|   +...+...+..+|..+.. .|   ++++|+.+|.++      .
T Consensus      1161 rk~~~e~~Idt~LafaYAK----l~rlee-le~f---I~~~n~ad~~~iGd~le~-eg---~YeeA~~~Y~kA------~ 1222 (1630)
T 1xi4_A         1161 RKKARESYVETELIFALAK----TNRLAE-LEEF---INGPNNAHIQQVGDRCYD-EK---MYDAAKLLYNNV------S 1222 (1630)
T ss_pred             HhhcccccccHHHHHHHHh----hcCHHH-HHHH---HhCCCHHHHHHHHHHHHh-cC---CHHHHHHHHHhh------h
Confidence            8754 33455568999887    445664 4433   345566778889999954 33   999999999997      4


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH-------------------------HHHHHHHHHHhhcChhcHHHHHHH
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRAGET-------------------------AADHVKNVILQQLSATSRDRAMLV  331 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------~a~~~~~~~~~~~~~~~~~~a~~~  331 (342)
                      -+..+|.+|...|++++|++.+++|......                         ++......+..+-..+.+++|+.+
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6889999999999999999999998432210                         111222333334456777777777


Q ss_pred             HHhhhcCCCCC
Q 019340          332 VDSWRAMPSLH  342 (342)
Q Consensus       332 ~~~~~~~~~~~  342 (342)
                      ++.-+.+.+.|
T Consensus      1303 lE~aL~LeraH 1313 (1630)
T 1xi4_A         1303 LEAALGLERAH 1313 (1630)
T ss_pred             HHHHhccChhH
Confidence            77766665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.42  E-value=2.7e-12  Score=113.17  Aligned_cols=159  Identities=14%  Similarity=0.043  Sum_probs=135.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      .++..++.+|..+..    .+++++|+..|++++..  +++.+++.+|.++...|++++|+.+|++++..  ++......
T Consensus       115 ~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          115 REEELXAQQAMQLMQ----ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             CHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             CchhhHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            467889999999988    58999999999999885  58999999999999999999999999998765  44455555


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CC--HHHHHHHHHH
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GY--VRAMYNTSLC  248 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~--~~a~~~lg~~  248 (342)
                      ++..+.  ..++..+|+..|+++++  +++++++++||.+|..    .+++++|+..|++++..  ++  ..++.+++.+
T Consensus       191 ~~~~l~--~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~  264 (287)
T 3qou_A          191 AQIELL--XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXDLTAADGQTRXTFQEI  264 (287)
T ss_dssp             HHHHHH--HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred             HHHHHH--hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence            666566  56677889999999876  5799999999999998    77999999999999986  34  7899999999


Q ss_pred             HHcCCCCcccHHHHHHHHHHHHH
Q 019340          249 YSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       249 y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      |.. .|   +.++|..+|++++.
T Consensus       265 ~~~-~g---~~~~a~~~~r~al~  283 (287)
T 3qou_A          265 LAA-LG---TGDALASXYRRQLY  283 (287)
T ss_dssp             HHH-HC---TTCHHHHHHHHHHH
T ss_pred             HHH-cC---CCCcHHHHHHHHHH
Confidence            954 33   88899999999874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.42  E-value=1.8e-12  Score=105.46  Aligned_cols=157  Identities=14%  Similarity=-0.018  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-DPAGQFNLGIS  178 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~  178 (342)
                      ..++.+|..+..    .+++++|+..|+++++.  +++.+++.+|.++...|++++|+..|++++... ++.....++.+
T Consensus         7 ~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~   82 (176)
T 2r5s_A            7 EQLLKQVSELLQ----QGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL   82 (176)
T ss_dssp             TTHHHHHHHHHH----TTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence            346778888888    58999999999998875  689999999999999999999999999987654 56665555555


Q ss_pred             HHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC
Q 019340          179 YLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG----YVRAMYNTSLCYSFG  252 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g  252 (342)
                      ... ...+..+|+..|+++++  ++++.+++++|.++..    .+++++|+.+|++++...    +..++.++|.++.. 
T Consensus        83 ~~~-~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-  156 (176)
T 2r5s_A           83 ELH-QQAAESPELKRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-  156 (176)
T ss_dssp             HHH-HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-
T ss_pred             HHH-hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-
Confidence            331 11223357999999887  4689999999999988    779999999999999875    25699999999964 


Q ss_pred             CCCcccHHHHHHHHHHHHH
Q 019340          253 EGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       253 ~g~~~~~~~A~~~~~~a~~  271 (342)
                      .|   +.++|+.+|++++.
T Consensus       157 ~g---~~~~A~~~y~~al~  172 (176)
T 2r5s_A          157 LG---QGNAIASKYRRQLY  172 (176)
T ss_dssp             HC---SSCHHHHHHHHHHH
T ss_pred             hC---CCCcHHHHHHHHHH
Confidence            33   88999999998864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.41  E-value=1.5e-12  Score=103.52  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~  211 (342)
                      ++.+++.+|.++...|++++|+.+|++++..  +++.++++||.+|.  ..+++++|+.+|++++.  ++++.+++++|.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~--~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--IKEQFQQAADLYAVAFALGKNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            4455666666666666666666666665533  55666666666666  55666666666666554  345666666666


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      ||..    .+++++|+.+|+++++.
T Consensus       113 ~~~~----lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLR----LKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHH----cCCHHHHHHHHHHHHHh
Confidence            6655    55566666666666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.41  E-value=2.7e-13  Score=117.88  Aligned_cols=189  Identities=12%  Similarity=0.044  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHH-------HHHHhcCCCHHHHHHHHHHHHhC--CC---
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDA-------GLMYWEMDKKEAAISLYRQAAVL--GD---  168 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~l-------g~~~~~~~~~~~A~~~~~~a~~~--~~---  168 (342)
                      .+|..|+-+.     .+|...|.+.|.++++.  +.+++|..+       +.++....+..+++..+++++..  +.   
T Consensus         9 ~~~~~~~~~~-----~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a   83 (282)
T 4f3v_A            9 SLFESAVSML-----PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA   83 (282)
T ss_dssp             HHHHHHHHHT-----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred             HHHHHHhccc-----CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence            3455566552     58999999999999986  589999999       88888888999999999998863  11   


Q ss_pred             ------------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 019340          169 ------------------PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAAR  228 (342)
Q Consensus       169 ------------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~  228 (342)
                                        .+....++.++.  ..+++++|.+.|...+..  ++. +++.+|.++..    .+++++|+.
T Consensus        84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~--~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~  156 (282)
T 4f3v_A           84 RIAIGGLYGDITYPVTSPLAITMGFAACEA--AQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVID  156 (282)
T ss_dssp             EEECCTTTCCCEEECSSHHHHHHHHHHHHH--HHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHH
T ss_pred             hhccCCcccccccccCCHhHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHH
Confidence                              345555777777  889999999999987654  456 99999999998    889999999


Q ss_pred             HHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          229 WYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG-----HGKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       229 ~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      +|+++....+    ..+++++|.++.. .|   ++++|+.+|++++...     ..++.+++|.++...|+.++|...|+
T Consensus       157 ~l~~a~~~~d~~~~~~a~~~LG~al~~-LG---~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          157 QVKSAGKWPDKFLAGAAGVAHGVAAAN-LA---LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHTTGGGCSCHHHHHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhhccCCcccHHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9998877643    3589999999954 44   9999999999998654     34688999999999999999999999


Q ss_pred             HHHHcCcH
Q 019340          300 LATRAGET  307 (342)
Q Consensus       300 ~a~~~~~~  307 (342)
                      ++...++.
T Consensus       233 ~a~a~~P~  240 (282)
T 4f3v_A          233 WLQTTHPE  240 (282)
T ss_dssp             HHHHHSCC
T ss_pred             HHHhcCCc
Confidence            99998776

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.41  E-value=5.7e-11  Score=105.21  Aligned_cols=236  Identities=8%  Similarity=-0.106  Sum_probs=185.3

Q ss_pred             HHHHHHHhhCCChhH-HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHH
Q 019340           67 DVLNKIAASFTLPQL-RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDA  143 (342)
Q Consensus        67 ~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~l  143 (342)
                      +....+.+....+.+ .+|.......+..-++  +..+++.-|.+.... |. .++++++.++.+++..+  +..+++..
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l-~~-~~~~eeL~~~~~~L~~nPk~y~aW~~R  109 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINELAS--HYTIWIYRFNILKNL-PN-RNLYDELDWCEEIALDNEKNYQIWNYR  109 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC-TT-SCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHc-cc-ccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence            334444444444444 4788788888877666  888999999998873 10 49999999999999864  88899999


Q ss_pred             HHHH----hcC---CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHH--HHHHHHHHHHHc--CCHHHHHHHH
Q 019340          144 GLMY----WEM---DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAE--EAVKLLYQASIA--GHVRAQYQLA  210 (342)
Q Consensus       144 g~~~----~~~---~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~--~A~~~~~~a~~~--~~~~a~~~lg  210 (342)
                      +.++    ...   +++++++.++.++++.  .+..++.+.+.++.  ..+.++  +++.++.++++.  .+..|+++.+
T Consensus       110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~--~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~  187 (306)
T 3dra_A          110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD--TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF  187 (306)
T ss_dssp             HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9888    666   7899999999999865  78999999999988  566666  999999999885  4889999999


Q ss_pred             HHHhcCCC--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CCHHHHHHH
Q 019340          211 LCLHRGRG--VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GHGKAQLEH  281 (342)
Q Consensus       211 ~~~~~g~~--~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~L  281 (342)
                      .++..-..  ....++++++++.+++..  ++..+|++++.++.....   ..+....+..+.++.     .++.++..|
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~al~~l  264 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR---SITQLEEFSLQFVDLEKDQVTSSFALETL  264 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---CGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC---ChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            98875210  011288999999999876  689999999999965432   455566677776654     478899999


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHH-cCcHHHHH
Q 019340          282 GLGLFTEGEMMKAVVYLELATR-AGETAADH  311 (342)
Q Consensus       282 g~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~  311 (342)
                      +.+|...|+.++|+.+|+++++ .++....+
T Consensus       265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y  295 (306)
T 3dra_A          265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNF  295 (306)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence            9999999999999999999997 68776554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=6e-12  Score=105.03  Aligned_cols=127  Identities=20%  Similarity=0.195  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      .+..++.+|.++..    .+++++|+..|+++++ .++.+++++|.+|...|++++|+.+|++++..  +++.+++++|.
T Consensus         5 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            5 EAISLWNEGVLAAD----KKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34566778888887    5788888888888864 36788888888888888888888888888754  67888888888


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHcC--C----------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          178 SYLQAQPANAEEAVKLLYQASIAG--H----------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~~--~----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      +|.  ..+++++|+.+|+++++..  +                +.+++++|.+|..    .+++++|+.+|+++++..
T Consensus        80 ~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           80 LYY--QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHH--HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcC
Confidence            888  7888888888888887732  2                2777778877776    667777777777777654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=1.1e-10  Score=111.46  Aligned_cols=215  Identities=9%  Similarity=-0.027  Sum_probs=171.0

Q ss_pred             hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCC---CcCCHH-------HHHHHHHHHHh-C--CCHHHHHHHHHHHhc
Q 019340           83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG---VRKNLD-------KALDSFLKGAA-R--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g---~~~~~~-------~A~~~~~~A~~-~--~~~~a~~~lg~~~~~  149 (342)
                      ++...+.+.+...+.  ++.+++.+|.++.....   ..++++       +|+..|++|+. .  ++..+++.+|.++..
T Consensus       256 ~a~~~y~~al~~~p~--~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            555667777776654  78999999999874000   025665       99999999996 3  578999999999999


Q ss_pred             CCCHHHHHHHHHHHHhCC--CH-HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHH-HhcCCCCCCCH
Q 019340          150 MDKKEAAISLYRQAAVLG--DP-AGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALC-LHRGRGVDFNL  223 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~~--~~-~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~-~~~g~~~~~~~  223 (342)
                      .|++++|+..|+++++..  ++ .++..+|.++.  ..+++++|+..|+++++..  ....+...+.+ +..    .++.
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~----~~~~  407 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC----SKDK  407 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH----TCCH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH--HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH----cCCh
Confidence            999999999999999873  44 58999999888  7889999999999999853  44555555555 333    5689


Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CH----HHHHHHHHHhhhcCCHHHHH
Q 019340          224 QEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HG----KAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       224 ~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      ++|..+|+++++.  +++..+..++.++.. .|   +.++|..+|++++...  ++    ..+..........|+.+.+.
T Consensus       408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g---~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~  483 (530)
T 2ooe_A          408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  483 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TT---CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred             hHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CC---CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999875  678999999998843 44   9999999999999863  22    35666677677789999999


Q ss_pred             HHHHHHHHcCcHHH
Q 019340          296 VYLELATRAGETAA  309 (342)
Q Consensus       296 ~~~~~a~~~~~~~a  309 (342)
                      .+++++++.-+.++
T Consensus       484 ~~~~r~~~~~p~~~  497 (530)
T 2ooe_A          484 KVEKRRFTAFREEY  497 (530)
T ss_dssp             HHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHCchhc
Confidence            99999998877554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=9e-12  Score=103.92  Aligned_cols=144  Identities=15%  Similarity=0.048  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      ..++.+|.++...|++++|+.+|+++++. ++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.+|..
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYT--ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            45677888888888888888888887643 6778888888887  777888888888887763  467777777777776


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHH
Q 019340          216 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                          .+++++|+.+|+++++.........   .+..|..               .......+++++|.+|...|++++|.
T Consensus        84 ----~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           84 ----TEKYDLAIKDLKEALIQLRGNQLID---YKILGLQ---------------FKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTTTCSEEE---CGGGTBC---------------CEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----cccHHHHHHHHHHHHHhCCCccHHH---HHHhccc---------------cCccchHHHHHHHHHHHHccCHHHHH
Confidence                5567777777777766421100000   0000000               00012466777777777777777777


Q ss_pred             HHHHHHHHcCc
Q 019340          296 VYLELATRAGE  306 (342)
Q Consensus       296 ~~~~~a~~~~~  306 (342)
                      .+|+++++..+
T Consensus       142 ~~~~~al~~~p  152 (213)
T 1hh8_A          142 EQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHcCc
Confidence            77777777655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.40  E-value=3.5e-11  Score=106.04  Aligned_cols=152  Identities=11%  Similarity=0.023  Sum_probs=100.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC--CCHH------HHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHH
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL--GDPA------GQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQ  206 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~--~~~~------a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~  206 (342)
                      .+..+...+++++|+.+|+++.+.  .++.      .+..+|.++.  ..+++++|+.+|+++++.    .+    ..++
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL--KKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            344555566666666666666653  2222      2223555555  556667777777766652    11    3356


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----C
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG-----G----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----G  273 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-----~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~  273 (342)
                      .++|.+|..    .+++++|+.+|++|++.     +    ...+++++|.+|..    .+++++|+.+++++++.    +
T Consensus       159 ~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~  230 (293)
T 3u3w_A          159 NAIANIYAE----NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcC
Confidence            677777765    55677777777777631     1    24577888888865    23888899888888763    1


Q ss_pred             ----CHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHc
Q 019340          274 ----HGKAQLEHGLGLFTEG-EMMKAVVYLELATRA  304 (342)
Q Consensus       274 ----~~~a~~~Lg~~~~~~~-~~~~A~~~~~~a~~~  304 (342)
                          -+.+++++|.+|...| ++++|..+|++|+.+
T Consensus       231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence                1678899999999999 579999999999865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.38  E-value=8.3e-12  Score=99.12  Aligned_cols=96  Identities=15%  Similarity=0.070  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|.++..    .+++++|+.+|++++..  +++.+++++|.+|...|++++|+.+|++++..  +++.+++++
T Consensus        35 ~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           35 MMDDIYSYAYDFYN----KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            56899999999998    69999999999999986  58999999999999999999999999999754  889999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      |.+|.  ..|++++|+.+|+++++..
T Consensus       111 g~~~~--~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          111 GQCQL--RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHhC
Confidence            99999  9999999999999999865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.38  E-value=1.9e-11  Score=107.85  Aligned_cols=145  Identities=14%  Similarity=0.046  Sum_probs=102.1

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHH------HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHc
Q 019340          118 RKNLDKALDSFLKGAARG--STL------AMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQ  181 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~--~~~------a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~  181 (342)
                      .+++++|+.+|+++.+..  ++.      .+..+|.++...+++++|+.+|+++++.    ++    ..++.+||.+|. 
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-  166 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-  166 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-
T ss_pred             HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-
Confidence            368888888888887742  222      3345788887777888888888888763    22    346778888887 


Q ss_pred             CCccCHHHHHHHHHHHHHc-----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHH
Q 019340          182 AQPANAEEAVKLLYQASIA-----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----YVRAMYN  244 (342)
Q Consensus       182 g~~~~~~~A~~~~~~a~~~-----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~----~~~a~~~  244 (342)
                       ..+++++|+.+|+++++.     +    ...+++++|.+|..    .+++++|+.++++|++.    +    .+.++++
T Consensus       167 -~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          167 -ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             -HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             -HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence             777888888888887741     1    24567788888877    67888888888888753    1    2677888


Q ss_pred             HHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          245 TSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       245 lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      +|.+|..-.   +++++|+.+|++|+.
T Consensus       242 lg~~~~~~g---~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLE---YEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---CcHHHHHHHHHHHHH
Confidence            888886421   146888888888875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=3.2e-11  Score=91.90  Aligned_cols=123  Identities=23%  Similarity=0.357  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS  178 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  178 (342)
                      +++.+|.+|..    .+++++|+.+|++++..  .+..+++.+|.++...|++++|+.+|++++..  .++.+++.+|.+
T Consensus         3 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   78 (136)
T 2fo7_A            3 AWYNLGNAYYK----QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHH----HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            45566666666    36677777777776653  35666666677766667777777777766543  456666666666


Q ss_pred             HHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          179 YLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      +.  ..+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++++
T Consensus        79 ~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           79 YY--KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HH--HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence            66  666666776666666553  355666666666655    4566666666666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.35  E-value=7.5e-14  Score=126.05  Aligned_cols=143  Identities=10%  Similarity=-0.006  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---------------HHHHHHHHH
Q 019340          151 DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---------------VRAQYQLAL  211 (342)
Q Consensus       151 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~  211 (342)
                      +++++|+..|+++++.  .++.+++++|.+++  ..+++++|+.+|+++++.  .+               ..+++++|.
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF--KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3344444444443322  33444555555555  444555555555554442  22               466666777


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT  287 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~  287 (342)
                      ||..    .+++++|+.+|+++++.  .++.+++++|.+|.. .|   ++++|+.+|+++++.  ++..++.+||.++..
T Consensus       205 ~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          205 CHLK----LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            7665    55677777777776664  466677777777744 22   777777777777665  456777777777777


Q ss_pred             cCCHHHH-HHHHHHHHH
Q 019340          288 EGEMMKA-VVYLELATR  303 (342)
Q Consensus       288 ~~~~~~A-~~~~~~a~~  303 (342)
                      .|++++| ...|++.+.
T Consensus       277 ~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          277 IRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            7777777 445555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.35  E-value=2.4e-11  Score=107.12  Aligned_cols=158  Identities=12%  Similarity=0.003  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C------HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S------TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD  168 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~  168 (342)
                      ...+...+..+..    .+++++|+.+|.++++..  .      ...++.+|.++...|++++|+.+|+++++.    .+
T Consensus        75 ~~~l~~~~~~~~~----~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           75 KKQFKDQVIMLCK----QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHHHH----hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            4555566777766    589999999999999853  2      244678999999999999999999999854    11


Q ss_pred             ----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          169 ----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       169 ----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                          ..+++++|.+|.  ..+++++|+.+|+++++.     ++    ..+++++|.+|..    .+++++|+.+|+++++
T Consensus       151 ~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          151 VYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE  224 (293)
T ss_dssp             TTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHH
Confidence                568999999999  899999999999999842     22    2689999999998    7899999999999986


Q ss_pred             CC--------CHHHHHHHHHHHHcCCCCcccHHHH-HHHHHHHHHc
Q 019340          236 GG--------YVRAMYNTSLCYSFGEGLPLSHRQA-RKWMKRAADC  272 (342)
Q Consensus       236 ~~--------~~~a~~~lg~~y~~g~g~~~~~~~A-~~~~~~a~~~  272 (342)
                      ..        ...+++++|.+|.. .|   ++++| ..+|++|+..
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~y~~-~g---~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          225 ISCRINSMALIGQLYYQRGECLRK-LE---YEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHTTBCSSHHHHHHHHHHHHHH-TT---CCHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHH-cC---CcHHHHHHHHHHHHHH
Confidence            42        26789999999965 33   89999 8889999764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=7.6e-11  Score=89.73  Aligned_cols=128  Identities=22%  Similarity=0.337  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG  216 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g  216 (342)
                      +++.+|.++...|++++|+.+|+++++.  .++.+++.+|.++.  ..+++++|+.+|++++...               
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~---------------   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY--KQGDYDEAIEYYQKALELD---------------   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHC---------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH--HhcCHHHHHHHHHHHHHHC---------------
Confidence            4555666666666666666666665532  44555555555555  4555555555555554421               


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHH
Q 019340          217 RGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKA  294 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A  294 (342)
                                         ..+..+++.+|.++.. .|   ++++|+.++++++..  .+..+++.+|.++...|++++|
T Consensus        66 -------------------~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           66 -------------------PRSAEAWYNLGNAYYK-QG---DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             -------------------TTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             -------------------CCchHHHHHHHHHHHH-hc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence                               1234445555555532 22   566666666666554  3456667777777777777777


Q ss_pred             HHHHHHHHHcCc
Q 019340          295 VVYLELATRAGE  306 (342)
Q Consensus       295 ~~~~~~a~~~~~  306 (342)
                      ..+|+++++.++
T Consensus       123 ~~~~~~~~~~~~  134 (136)
T 2fo7_A          123 IEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHST
T ss_pred             HHHHHHHHccCC
Confidence            777777766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.33  E-value=7.5e-12  Score=109.94  Aligned_cols=95  Identities=23%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|..+..    .+++++|+.+|++++..  +++.+++++|.+|...|++++|+..|+++++.  +++.+++++
T Consensus         3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56667777777776    46777777777777664  36677777777777777777777777777654  566777777


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      |.+|.  ..+++++|+.+|+++++.
T Consensus        79 g~~~~--~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           79 GQCQL--EMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHh
Confidence            77777  666777777777776653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.33  E-value=1.1e-12  Score=120.50  Aligned_cols=205  Identities=10%  Similarity=-0.017  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGIS  178 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  178 (342)
                      ++.++..++..+..    .+++++|+.+++.+.+. .++.....|+.+|.+.|+++++..+++.    .+..++.++|..
T Consensus        60 D~~~y~~V~~~ae~----~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~  131 (449)
T 1b89_A           60 DPSSYMEVVQAANT----SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDR  131 (449)
T ss_dssp             -----------------------------------------------------CHHHHTTTTTC----C-----------
T ss_pred             CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHH
Confidence            33444444444444    34555555555544442 2333444555555555555555544432    334466777777


Q ss_pred             HHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccc
Q 019340          179 YLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLS  258 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~  258 (342)
                      +.  ..|++++|+.+|.++      ..+..||.|+..    .+++++|++.|++|   +++..|-.+..++...    ++
T Consensus       132 ~~--~~g~yeeA~~~Y~~a------~n~~~LA~~L~~----Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv~~----~e  192 (449)
T 1b89_A          132 CY--DEKMYDAAKLLYNNV------SNFGRLASTLVH----LGEYQAAVDGARKA---NSTRTWKEVCFACVDG----KE  192 (449)
T ss_dssp             -------CTTTHHHHHHHT------TCHHHHHHHHHT----TTCHHHHHHHHHHH---TCHHHHHHHHHHHHHT----TC
T ss_pred             HH--HcCCHHHHHHHHHHh------hhHHHHHHHHHH----hccHHHHHHHHHHc---CCchhHHHHHHHHHHc----Cc
Confidence            76  677777777777765      456677777766    66777777777777   4677777766666542    27


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHHhhcChhcHHHHHHHHH
Q 019340          259 HRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVILQQLSATSRDRAMLVVD  333 (342)
Q Consensus       259 ~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  333 (342)
                      +++|..+....+  -+++-...+...|...|.+++|+.+++.++..  .+....+-++.+...-..+...+..+++.
T Consensus       193 f~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          193 FRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            777766555422  45555666778888889999999999998766  46777788888888777777777766543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.32  E-value=1.3e-11  Score=108.47  Aligned_cols=187  Identities=12%  Similarity=0.008  Sum_probs=137.4

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      ++.+++.+|.++...|++++|+.+|++++..  .++.+++++|.+|.  ..+++++|+.+|+++++.  +++.+++++|.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5678999999999999999999999999864  78999999999999  899999999999999874  68999999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhh
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEGGYVR--AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFT  287 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~~~~~--a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~  287 (342)
                      +|..    .+++++|+.+|+++++.....  .+........       ...++..|.......  .+......++.++  
T Consensus        81 ~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--  147 (281)
T 2c2l_A           81 CQLE----MESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-------RIAKKKRWNSIEERRIHQESELHSYLTRLI--  147 (281)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred             HHHH----cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence            9998    779999999999998753111  1111111111       333444454444333  4555566666654  


Q ss_pred             cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhc-ChhcHHHHHHHHHhhhc
Q 019340          288 EGEMMKAVVYLELATRAGETAADHVKNVILQQL-SATSRDRAMLVVDSWRA  337 (342)
Q Consensus       288 ~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~~~~  337 (342)
                      .|++++|+..|+++++..+.+......+..... ..+..+++.+++.+...
T Consensus       148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            699999999999999987766544333332222 23556677777766544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.31  E-value=2.7e-11  Score=93.10  Aligned_cols=101  Identities=14%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--C-------H
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--D-------P  169 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~-------~  169 (342)
                      +.++..||..+..    .+++++|+.+|++|++.  .++.+++++|.+|...|++++|+..|+++++.+  +       .
T Consensus         8 A~a~~~lG~~~~~----~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            8 AIAEKDLGNAAYK----QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            4556667777766    46777777777777664  366677777777777777777777777776431  1       2


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHH
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQY  207 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~  207 (342)
                      .+++++|.++.  ..+++++|+.+|++++.. .+++...
T Consensus        84 ~~~~~lg~~~~--~~~~~~~A~~~~~kal~~~~~~~~~~  120 (127)
T 4gcn_A           84 KAMSRAGNAFQ--KQNDLSLAVQWFHRSLSEFRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence            45666666666  666666666666666653 2444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.31  E-value=1e-11  Score=98.27  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=74.1

Q ss_pred             HHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--c
Q 019340          127 SFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--A  200 (342)
Q Consensus       127 ~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~  200 (342)
                      .|++++..+  +..+++.+|.++...|++++|+..|++++..  .++.+++++|.+|.  ..+++++|+.+|++++.  +
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ--AMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCC
Confidence            456666553  5566777777777777777777777777643  66777777777777  67777777777777765  3


Q ss_pred             CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          201 GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       201 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      +++.+++++|.+|..    .+++++|+.+|+++++.
T Consensus        87 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL  118 (148)
T ss_dssp             TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            567777777777776    66777777777777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.30  E-value=9.4e-11  Score=96.62  Aligned_cols=148  Identities=13%  Similarity=-0.008  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccCHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPANAE  188 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~~~  188 (342)
                      +++++|...++.....  ..+.++..+|.++...|++++|+.+|+++++.        ....++.++|.+|.  ..++++
T Consensus         6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~   83 (203)
T 3gw4_A            6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER--MAGNWD   83 (203)
T ss_dssp             -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HTTCHH
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HcCCHH
Confidence            4566666633332221  23455556666666666666666666665541        12344555555555  455555


Q ss_pred             HHHHHHHHHHHc----C-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHH
Q 019340          189 EAVKLLYQASIA----G-HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR  263 (342)
Q Consensus       189 ~A~~~~~~a~~~----~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~  263 (342)
                      +|+.+|+++++.    + ++.                                ....+++++|.+|..    .+++++|+
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~~lg~~~~~----~g~~~~A~  127 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPL--------------------------------AASANAYEVATVALH----FGDLAGAR  127 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHH--------------------------------HHHHHHHHHHHHHHH----HTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccHH--------------------------------HHHHHHHHHHHHHHH----hCCHHHHH
Confidence            555555554432    1 100                                012345666666643    22677777


Q ss_pred             HHHHHHHHc----CC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          264 KWMKRAADC----GH----GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       264 ~~~~~a~~~----~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      .+++++++.    ++    ..++.++|.++...|++++|..+++++++.
T Consensus       128 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          128 QEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            777776542    33    234688999999999999999999998865

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.30  E-value=4.5e-11  Score=91.83  Aligned_cols=94  Identities=20%  Similarity=0.244  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--C-------HHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--H-------VRA  205 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~-------~~a  205 (342)
                      +.++.+||..+...|++++|+.+|++|++.  .++.+++++|.+|.  ..+++++|+.+|+++++..  +       ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF--EEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH--HhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            456778999999999999999999998764  77889999999999  8889999999999987642  1       346


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      ++++|.++..    .+++++|+.+|++++..
T Consensus        86 ~~~lg~~~~~----~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           86 MSRAGNAFQK----QNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            7777777776    66777777777777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.29  E-value=1.1e-10  Score=92.94  Aligned_cols=124  Identities=12%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +..++.+|.++..    .+++++|+.+|++++..  .++.+++.+|.++...|++++|+.+|+++++.  .++.+++++|
T Consensus        13 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A           13 AEELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4566777777777    47888888888887775  36777788888888888888888888887754  5677788888


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHH
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC--LHRGRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~~A~  234 (342)
                      .++.  ..+++++|+.+|+++++.  .++.++..++.+  +..    .+++++|+.++.++.
T Consensus        89 ~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           89 ASNM--ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence            8877  777888888888877664  456666444444  433    445666666666543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.29  E-value=1.1e-11  Score=113.90  Aligned_cols=225  Identities=11%  Similarity=0.029  Sum_probs=91.7

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAA  156 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A  156 (342)
                      ..+++.+|.    .+.+..   +++..++.||..+..    .+++++|++.|.++   +++.++..++..+...|++++|
T Consensus        15 ~~~~ld~A~----~fae~~---~~~~vWs~La~A~l~----~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeA   80 (449)
T 1b89_A           15 HIGNLDRAY----EFAERC---NEPAVWSQLAKAQLQ----KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHH----HHHHhC---CChHHHHHHHHHHHH----cCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHH
Confidence            335566774    333333   355688899999999    48999999999874   6778899999999999999999


Q ss_pred             HHHHHHHHhC-CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          157 ISLYRQAAVL-GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       157 ~~~~~~a~~~-~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      +.+++.+.+. .++.....|+.+|.  ..++..++..+++.    .+..++..+|.+|..    .+.+++|+.+|.++  
T Consensus        81 i~yl~~ark~~~~~~i~~~Li~~Y~--Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~----~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           81 VKYLQMARKKARESYVETELIFALA--KTNRLAELEEFING----PNNAHIQQVGDRCYD----EKMYDAAKLLYNNV--  148 (449)
T ss_dssp             ------------------------------CHHHHTTTTTC----C--------------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHHhCccchhHHHHHHHHH--HhCCHHHHHHHHcC----CcHHHHHHHHHHHHH----cCCHHHHHHHHHHh--
Confidence            9999988865 45666777888888  78899998888853    445699999999987    77899999999986  


Q ss_pred             CCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340          236 GGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNV  315 (342)
Q Consensus       236 ~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~  315 (342)
                          ..+..|+.++.+ .|   ++++|++.++++   +++..+..++.++...|+++.|..+... +...+.+..   .+
T Consensus       149 ----~n~~~LA~~L~~-Lg---~yq~AVea~~KA---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVH-LG---EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---EL  213 (449)
T ss_dssp             ----TCHHHHHHHHHT-TT---CHHHHHHHHHHH---TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HH
T ss_pred             ----hhHHHHHHHHHH-hc---cHHHHHHHHHHc---CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HH
Confidence                578889999965 33   999999999999   5899999999999999999999777775 333444433   34


Q ss_pred             HHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340          316 ILQQLSATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      +..+...+..+++..+++.-+...+.|
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            445566689999999999888877655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.27  E-value=7.5e-11  Score=97.21  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=112.3

Q ss_pred             CCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHH
Q 019340           76 FTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G----STLAMVDAGLMY  147 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~~  147 (342)
                      +..|++.+|...+.....  .....+.+++.+|.+|..    .+++++|+.+|+++++.    +    ...++.++|.+|
T Consensus         3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAF----MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE   76 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            566788888753333322  222467899999999998    58999999999999883    2    456788999999


Q ss_pred             hcCCCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHH
Q 019340          148 WEMDKKEAAISLYRQAAVL----G-D----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLA  210 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~----~-~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg  210 (342)
                      ...|++++|+.+|+++++.    + +    ..++.++|.++.  ..+++++|+.+++++++.    ++    ..++.++|
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL--HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            9999999999999999864    3 3    357889999999  889999999999998752    33    23457778


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          211 LCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       211 ~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      .++..    .+++++|+.+++++++
T Consensus       155 ~~~~~----~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          155 DLAQQ----EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHH----CcCHHHHHHHHHHHHH
Confidence            77776    5677888888777765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.27  E-value=8.8e-11  Score=89.56  Aligned_cols=108  Identities=10%  Similarity=-0.011  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..++.+|..+..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++|+..|+++++.  +++.+++++
T Consensus         3 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            3 KAEEARLEGKEYFT----KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            35567777877777    47888888888888775  46778888888888888888888888887754  667888888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--------GHVRAQYQLALCL  213 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~  213 (342)
                      |.++.  ..+++++|+.+|+++++.        .++.+...++.+.
T Consensus        79 g~~~~--~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           79 ATAQI--AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHH--HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            88888  777888888888877653        3455555555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=3.4e-10  Score=89.97  Aligned_cols=94  Identities=19%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC  212 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  212 (342)
                      +..++.+|.++...|++++|+.+|+++++.  .++.+++++|.++.  ..+++++|+.+|+++++.  .++.+++++|.+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            456677777777777777777777777654  56777777777777  667777777777777663  456666667766


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      +..    .+++++|+.+|+++++.
T Consensus        91 ~~~----~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           91 NMA----LGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHH----hccHHHHHHHHHHHHHh
Confidence            665    45666666666666553

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.26  E-value=9.7e-11  Score=105.54  Aligned_cols=110  Identities=18%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---------------TLAMVDAGLMYWEMDKKEAAISLYRQ  162 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~  162 (342)
                      ++.+++.+|.+|..    .+++++|+..|++|+...  +               ..+++++|.+|...|++++|+.+|++
T Consensus       146 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          146 QSTIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34555666666655    456666666666666542  2               35556666666666666666666666


Q ss_pred             HHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          163 AAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       163 a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      +++.  +++.+++++|.+|.  ..+++++|+.+|+++++.  +++.++.++|.++..
T Consensus       222 al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHL--AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            5543  45566666666666  555666666666665543  355566666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.26  E-value=8.9e-11  Score=94.05  Aligned_cols=108  Identities=17%  Similarity=0.114  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++..++.+|.++..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++|+.+|+++++.  +++.+++++
T Consensus        10 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A           10 ESDKLKSEGNAAMA----RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46777888888887    58888888888888875  47888888888888888888888888888754  678888888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCL  213 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~  213 (342)
                      |.+|.  ..+++++|+.+|+++++  ++++.+++..+...
T Consensus        86 g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           86 GLARF--DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHH--HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            88888  78888888888888765  45666665555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.24  E-value=1.6e-10  Score=88.09  Aligned_cols=95  Identities=17%  Similarity=0.026  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC  212 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  212 (342)
                      +..++.+|..+...|++++|+.+|+++++.  +++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA--KLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            467788999999999999999999998864  67899999999998  888999999999998774  578889999999


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      |..    .+++++|+.+|+++++..
T Consensus        82 ~~~----~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           82 QIA----VKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHH----HhCHHHHHHHHHHHHHhC
Confidence            887    678889999988887643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.24  E-value=1.8e-10  Score=87.90  Aligned_cols=110  Identities=11%  Similarity=0.074  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+.+++.+|.++..    .+++++|+.+|+++++.  .+..+++.+|.+|...|++++|+.+|+++++.  .++.+++++
T Consensus        15 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           15 LALMVKNKGNECFQ----KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             HHHHHHHHHHHHHH----TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            56778888888887    58889999999998886  37888888999988889999999999888764  678888888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      |.++.  ..+++++|+.+|+++++.  .+..++..++.++..
T Consensus        91 a~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           91 AAALE--AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHH--HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            88888  788888888888888774  467788888887753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.24  E-value=6.4e-11  Score=92.63  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~  211 (342)
                      +..+++.+|.++...|++++|+.+|++++..  .++.+++.+|.+|.  ..+++++|+.+|++++.  ++++.+++++|.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ--SLGLYEQALQSYSYGALMDINEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            3445556666666666666666666665533  45666666666666  55666666666666554  345566666666


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      +|..    .+++++|+.+|+++++
T Consensus        95 ~~~~----~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           95 CHLQ----LGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHH----cCCHHHHHHHHHHHHH
Confidence            6655    4556666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.23  E-value=1.3e-10  Score=93.04  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=91.5

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      ++.+++.+|.++...|++++|+.+|+++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS--ASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4677889999999999999999999999865  78999999999999  889999999999998874  58899999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      +|..    .+++++|+.+|+++++.  ++..+++..+...
T Consensus        88 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           88 ARFD----MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHH----ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9987    77899999999999875  4555555555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.23  E-value=2.8e-11  Score=95.63  Aligned_cols=95  Identities=19%  Similarity=0.127  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|.++..    .+++++|+.+|++++..  +++.+++.+|.+|...|++++|+.+|++++..  +++.+++++
T Consensus        20 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQ----SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            56789999999998    58999999999999886  58999999999999999999999999999864  789999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      |.+|.  ..|++++|+.+|+++++.
T Consensus        96 g~~~~--~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           96 AECLL--QXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHH
Confidence            99999  899999999999998774

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.22  E-value=1.3e-10  Score=101.06  Aligned_cols=188  Identities=11%  Similarity=0.091  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH-------HHHHHcCCccCHHHHHHHHHHHHHc--CC-----
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL-------GISYLQAQPANAEEAVKLLYQASIA--GH-----  202 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------g~~~~~g~~~~~~~A~~~~~~a~~~--~~-----  202 (342)
                      .++..|.-+ ..+|+..|...|.++++.  +.+++|..+       +.++.  ......+++..+++++..  +.     
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~--~~~r~~~a~~~~~~~l~l~p~~l~a~~   85 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLF--RAWYSRRNFGQLSGSVQISMSTLNARI   85 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHH--HHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHH--HHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence            455566666 589999999999999865  789999988       67776  556667888888887762  11     


Q ss_pred             ----------------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHH
Q 019340          203 ----------------VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARK  264 (342)
Q Consensus       203 ----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~  264 (342)
                                      .+....++.++..    .+++++|.+.|...+..+  +. +++.+|.++..    .+++++|+.
T Consensus        86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~----~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~----~~r~~dA~~  156 (282)
T 4f3v_A           86 AIGGLYGDITYPVTSPLAITMGFAACEAA----QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA----AERWTDVID  156 (282)
T ss_dssp             ECCTTTCCCEEECSSHHHHHHHHHHHHHH----HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH----TTCHHHHHH
T ss_pred             ccCCcccccccccCCHhHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH----cCCHHHHHH
Confidence                            3455567777776    678999999999887664  34 89999999976    449999999


Q ss_pred             HHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          265 WMKRAADCGH----GKAQLEHGLGLFTEGEMMKAVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       265 ~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      +|+.+....+    ..++++||.++...|++++|+.+|++++...     ..++..+++.++..+  ++.++|+.+++++
T Consensus       157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l--Gr~deA~~~l~~a  234 (282)
T 4f3v_A          157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ--GNESAAVALLEWL  234 (282)
T ss_dssp             HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence            9998877643    3478999999999999999999999998654     346777777777665  8899999999999


Q ss_pred             hcCCC
Q 019340          336 RAMPS  340 (342)
Q Consensus       336 ~~~~~  340 (342)
                      ....|
T Consensus       235 ~a~~P  239 (282)
T 4f3v_A          235 QTTHP  239 (282)
T ss_dssp             HHHSC
T ss_pred             HhcCC
Confidence            87766

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.20  E-value=3.1e-09  Score=94.05  Aligned_cols=217  Identities=6%  Similarity=-0.151  Sum_probs=175.2

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHH----Hc-CCccCH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISY----LQ-AQPANA  187 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~----~~-g~~~~~  187 (342)
                      ...++|+..+.+++..  .+..+++..+.++...+  ++++++.++.+++..  .+..++...+.++    .. +..+++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            3456899999999997  48999999999999998  999999999999864  7889999999998    42 112789


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHH--HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC--CcccH
Q 019340          188 EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQ--EAARWYLRAAEG--GYVRAMYNTSLCYSFGEG--LPLSH  259 (342)
Q Consensus       188 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~--~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g--~~~~~  259 (342)
                      ++++.++.++++.  .+..+++.-+.++..    .+.++  +++.++.++++.  .+..||.+.+.+...-..  ....+
T Consensus       127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~----l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHHVWSYRKWLVDT----FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence            9999999999885  589999999999876    34455  999999999986  588899999999854210  01228


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH-HHHHHHHHHHcC-----cHHHHHHHHHHHhhcChhcHHHHHHH
Q 019340          260 RQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK-AVVYLELATRAG-----ETAADHVKNVILQQLSATSRDRAMLV  331 (342)
Q Consensus       260 ~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~-A~~~~~~a~~~~-----~~~a~~~~~~~~~~~~~~~~~~a~~~  331 (342)
                      ++++.++++++..  ++..+++.++.++...|+..+ ...+..+.++.+     ...+...+..+...  .++.++|.++
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~  280 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Confidence            9999999999876  779999999999998887544 556777776654     67788777777764  4788999999


Q ss_pred             HHhhhc-CCCC
Q 019340          332 VDSWRA-MPSL  341 (342)
Q Consensus       332 ~~~~~~-~~~~  341 (342)
                      ++.+.. ..|.
T Consensus       281 ~~~l~~~~Dpi  291 (306)
T 3dra_A          281 YDLLKSKYNPI  291 (306)
T ss_dssp             HHHHHHTTCGG
T ss_pred             HHHHHhccChH
Confidence            999875 5654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.20  E-value=3e-10  Score=86.63  Aligned_cols=109  Identities=16%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      ++.+++.+|.++...|++++|+.+|+++++.  .++.+++++|.++.  ..+++++|+.+|+++++.  .++.+++++|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT--KLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            5677888888888888888888888888865  57888888888888  788888888888888764  46788888888


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      +|..    .+++++|+.+|++++..  .+..++..++.++.
T Consensus        93 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           93 ALEA----MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHH----HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            8876    66778888888877765  35566777776663

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.20  E-value=1.3e-10  Score=94.09  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HHcCCccCH--HHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS-YLQAQPANA--EEAV  191 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~-~~~g~~~~~--~~A~  191 (342)
                      +++++|+..|++++..  .++.+++.+|.+|...|++++|+.+|+++++.  .++.+++.+|.+ +.  ..+++  ++|+
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--~~~~~~~~~A~  101 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY--QASQHMTAQTR  101 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH--HTTTCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hcCCcchHHHH
Confidence            4555555555555553  25555556666666666666666666665532  455555666655 44  34454  5666


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          192 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++++.
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhh
Confidence            666655542  345555566655554    44555555555555554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.19  E-value=2.1e-10  Score=89.60  Aligned_cols=101  Identities=17%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++.+++.+|.++..    .+++++|+.+|++++..  .++.+++.+|.+|...|++++|+.+|++++..  +++.+++++
T Consensus        17 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           17 TLEQLYALGFNQYQ----AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            56788999999998    58999999999999986  48999999999999999999999999999865  789999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQ  206 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~  206 (342)
                      |.+|.  ..+++++|+.+|+++++.  +++...
T Consensus        93 g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           93 AECHL--QLGDLDGAESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHH--HcCCHHHHHHHHHHHHHhCCCCcchH
Confidence            99999  899999999999998764  454443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.18  E-value=3.2e-11  Score=99.79  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             cCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP----------------AGQFNLGI  177 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~----------------~a~~~Lg~  177 (342)
                      .++++++.+.+......  ..+..+..+|.++...|++++|+.+|++++..  .++                .+++++|.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            45566666555543332  34556667777777777777777777777754  232                55555666


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      +|.  ..+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|++++..  .+..++..++.++
T Consensus        97 ~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           97 CYN--KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHH--HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            655  555666666666655542  345555555555554    44555555555555443  3444555555444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.17  E-value=5.3e-10  Score=87.89  Aligned_cols=125  Identities=18%  Similarity=0.183  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD  168 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~  168 (342)
                      +.+++.+|.+|..    .+++++|+.+|+++++.    ++    ..++..+|.+|...|++++|+.+|+++++.    ++
T Consensus         9 ~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            9 GRAFGNLGNTHYL----LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            4567778888877    47888888888888764    22    246778888888888888888888887753    22


Q ss_pred             ----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          169 ----PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G----HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       169 ----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                          ..++.++|.++.  ..+++++|+.+++++++.    +    .+.++..+|.+|..    .+++++|+.+++++++
T Consensus        85 ~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYT--LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence                456777777777  777888888888877643    1    13455566666655    4556666666666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.17  E-value=1.1e-09  Score=82.84  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      ++..++.+|.++..    .+++++|+.+|++++..  +++.+++.+|.++...|++++|+.+|+++++.  .++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A           11 EAERLKTEGNEQMK----VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            45667778888877    47888888888888774  46777888888888888888888888887754  667788888


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      |.++.  ..+++++|+.+|+++++.  +++.++..+|.++..
T Consensus        87 ~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           87 GLALS--SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHH--HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            88888  777888888888887664  467777788777753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.16  E-value=7.8e-10  Score=82.19  Aligned_cols=107  Identities=13%  Similarity=-0.004  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +..++.+|.++..    .+++++|+.+|++++..  +++.+++.+|.++...|++++|+.+++++++.  .++.+++++|
T Consensus         4 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a   79 (118)
T 1elw_A            4 VNELKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3455556666655    35666666666666553  35556666666666666666666666665543  4556666666


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                      .++.  ..+++++|+.+|+++++.  +++.++..++.+.
T Consensus        80 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           80 AALE--FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHH--HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHH--HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            6666  555666666666665543  3455555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.16  E-value=1.6e-09  Score=80.38  Aligned_cols=108  Identities=13%  Similarity=0.021  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      .+.+++.+|.++...|++++|+.+|++++..  .++.+++.+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA--KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3567888999999999999999999998764  67899999999998  888999999999998874  57888999999


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      ++..    .+++++|+.+|+++++.  +++.++..++.+.
T Consensus        81 ~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           81 ALEF----LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9887    67889999999988876  4677777777665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.1e-09  Score=83.51  Aligned_cols=111  Identities=12%  Similarity=0.032  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--S---TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG  171 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a  171 (342)
                      .++..++.+|.++..    .+++++|+.+|+++++..  +   ..+++.+|.+|...|++++|+.+|+++++.  .++.+
T Consensus        26 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           26 SSVEQLRKEGNELFK----CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             HHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            467888899999988    589999999999999875  2   788999999999999999999999998865  67999


Q ss_pred             HHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          172 QFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       172 ~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      ++++|.++.  ..+++++|+.+|+++++.  +++.++..++.+...
T Consensus       102 ~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          102 LYRRSQALE--KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHH--HHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            999999999  889999999999998874  578888888887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.15  E-value=1.7e-09  Score=81.11  Aligned_cols=108  Identities=20%  Similarity=0.337  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      +.+++.+|.++..    .+++++|+.+|++++..  ++..+++.+|.++...|++++|+.+|+++++.  .++.+++.+|
T Consensus         9 ~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   84 (125)
T 1na0_A            9 AEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG   84 (125)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            5667777877777    47888888888888764  46777788888888888888888888887754  5677777888


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      .++.  ..+++++|+.+|+++++.  .++.++..+|.++.
T Consensus        85 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           85 NAYY--KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHH--HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8877  677888888888877664  46777777777764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.14  E-value=5.9e-10  Score=90.17  Aligned_cols=119  Identities=10%  Similarity=0.071  Sum_probs=101.5

Q ss_pred             hCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HhcCC
Q 019340           75 SFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLM-YWEMD  151 (342)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~-~~~~~  151 (342)
                      ++..+++.+|...+...++..+.  ++.+++.+|.+|..    .+++++|+.+|++++..  .++.+++.+|.+ +...|
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLW----QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS   93 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            35667888888888877777654  88999999999998    58999999999999885  589999999999 88899


Q ss_pred             CH--HHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          152 KK--EAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       152 ~~--~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      ++  ++|+.+|+++++.  +++.+++++|.+|.  ..+++++|+.+|+++++..
T Consensus        94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSNEITALMLLASDAF--MQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTC
T ss_pred             CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcccHHHHHHHHHHHHhhC
Confidence            98  9999999999865  78999999999999  8899999999999998864

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.14  E-value=2.1e-08  Score=89.44  Aligned_cols=235  Identities=9%  Similarity=-0.115  Sum_probs=173.1

Q ss_pred             ChhHH-hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCc-------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340           78 LPQLR-AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVR-------KNLDKALDSFLKGAAR--GSTLAMVDAGLMY  147 (342)
Q Consensus        78 ~~~~~-~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~  147 (342)
                      .+++. +|.......+..-++  +..+++.-+.+.... +..       ..+++++.++..++..  .+..++.+.+.++
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l-~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPD--FATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHh-cccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34444 566556666655444  677777777777652 100       1167899999999885  4899999999999


Q ss_pred             hcCC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCC--
Q 019340          148 WEMD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPAN-AEEAVKLLYQASIA--GHVRAQYQLALCLHRGRG--  218 (342)
Q Consensus       148 ~~~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~-~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~--  218 (342)
                      ...+  ++++++.++.++++.  .+..||.+.+.+..  ..+. .++++.++.++++.  .+..|+++.+.++..-..  
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~--~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA--QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            8887  489999999999865  78899999999988  5556 68999999999885  589999999888764210  


Q ss_pred             --------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCc-------ccHHHHHHHHHHHHHcCC--HHHHH
Q 019340          219 --------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLP-------LSHRQARKWMKRAADCGH--GKAQL  279 (342)
Q Consensus       219 --------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~-------~~~~~A~~~~~~a~~~~~--~~a~~  279 (342)
                              ....+++++.++.+++..  ++..+|+.+..++..+.|..       .-+++++.++++.++..+  ..++.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                    013578999999999865  78999988888887776532       358899999999988643  44443


Q ss_pred             HHHHHh---hhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340          280 EHGLGL---FTEGEMMKAVVYLELATRAGETAADHVKNVIL  317 (342)
Q Consensus       280 ~Lg~~~---~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~  317 (342)
                      .++.+.   ...+..++...|+.+..+.+|....++..+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~  317 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  317 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            333322   13578889999999999999988877665443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.8e-09  Score=98.60  Aligned_cols=155  Identities=10%  Similarity=0.038  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--------CC
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA--------GH  202 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--------~~  202 (342)
                      ++.+||.+|...|++++|+++|.++...    +..    .....+|.++.  ..+++++|+.++++++..        ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~  134 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ--VPDSLDDQIFVCEKSIEFAKREKRVFLK  134 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS--CCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence            3455666666666666666666655432    111    12333444444  555666666666655431        12


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--
Q 019340          203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--------GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--  272 (342)
Q Consensus       203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  272 (342)
                      ..++.+||.+|..    .+++.+|..+++++...        ....++..+|.+|..    .+|+++|..+|+++...  
T Consensus       135 ~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          135 HSLSIKLATLHYQ----KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhh
Confidence            4455566666655    45566666666655432        123456666666643    22666777666666542  


Q ss_pred             --C-C----HHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          273 --G-H----GKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       273 --~-~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                        . +    ...+..+|.++...+++++|..+|..+.+
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              1 1    23345667777777777777777777654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.14  E-value=1.9e-09  Score=81.55  Aligned_cols=109  Identities=20%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLAL  211 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~  211 (342)
                      ++.+++.+|.++...|++++|+.+|++++..  .++.+++.+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS--KLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            4566777888888888888888888887754  56788888888887  777888888888887764  46777777777


Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          212 CLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       212 ~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      ++..    .+++++|+.+|++++..  ++..++..+|.++.
T Consensus        89 ~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           89 ALSS----LNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHH----hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            7776    56777777777777664  35666666666663

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.13  E-value=6.1e-10  Score=92.00  Aligned_cols=110  Identities=15%  Similarity=0.249  Sum_probs=97.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHHHHhcCCCHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST----------------LAMVDAGLMYWEMDKKEAAISLYR  161 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~----------------~a~~~lg~~~~~~~~~~~A~~~~~  161 (342)
                      .+..+..+|.++..    .+++++|+.+|.+++..  .++                .+++++|.+|...|++++|+.+|+
T Consensus        37 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           37 SAFDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            35667888999988    58999999999999986  233                889999999999999999999999


Q ss_pred             HHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          162 QAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       162 ~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      ++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  +++.++..++.++..
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANM--YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            99865  78999999999999  899999999999999874  689999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.11  E-value=1.7e-09  Score=100.09  Aligned_cols=193  Identities=12%  Similarity=0.006  Sum_probs=156.2

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCH---------------HHHHHHHHHHHcCCCCcCCHHHHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREA---------------MVLLRWGKRFKHGRGVRKNLDKALDSFL  129 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a---------------~a~~~lg~~y~~g~g~~~~~~~A~~~~~  129 (342)
                      |...+..+..++..|++.+|...+....+..+..++.               .++..||.+|..    .+++++|+++|.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~----~~~~~~a~~~~~   79 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT----MGAKDKLREFIP   79 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH----CCCHHHHHHHHH
Confidence            5567888888889999999999998888876654432               468899999998    689999999999


Q ss_pred             HHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          130 KGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------GDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       130 ~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      ++...    +.    ..+...+|.++...|++++|+.++++++..        .......+||.+|.  ..|++.+|+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~  157 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY--QKKQYKDSLAL  157 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH--HHTCHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH--HccChHHHHHH
Confidence            98773    22    234567899999999999999999998742        23678899999999  99999999999


Q ss_pred             HHHHHHc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-C----HHHHHHHHHHHHcCCCCc
Q 019340          194 LYQASIA--------GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-Y----VRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       194 ~~~a~~~--------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~-~----~~a~~~lg~~y~~g~g~~  256 (342)
                      ++++...        ...+++..+|.+|..    .+|+++|..+|+++...    . +    ...+..+|.++..    .
T Consensus       158 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~----~  229 (434)
T 4b4t_Q          158 INDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE----D  229 (434)
T ss_dssp             HHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS----S
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH----H
Confidence            9998752        136789999999998    88999999999999753    2 2    2345667777744    3


Q ss_pred             ccHHHHHHHHHHHHH
Q 019340          257 LSHRQARKWMKRAAD  271 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~  271 (342)
                      +++.+|..+|..+.+
T Consensus       230 ~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          230 KDYKTAFSYFFESFE  244 (434)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHH
Confidence            499999999999876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.11  E-value=2.9e-09  Score=79.74  Aligned_cols=108  Identities=23%  Similarity=0.314  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC  212 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  212 (342)
                      ..+++.+|.++...|++++|+.+|++++..  +++.+++.+|.++.  ..+++++|+.+|+++++.  .++.+++.+|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            567788888888888888888888888754  56788888888888  778888888888887764  467777888888


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      |..    .+++++|+.+|+++++.  .++.++..+|.++.
T Consensus        87 ~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           87 YYK----QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHH----hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            776    56777888888777664  46667777776663

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=4.7e-10  Score=85.31  Aligned_cols=90  Identities=24%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY  179 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  179 (342)
                      ++.+|.++..    .+++++|+..|++++..  +++.+++.+|.++...|++++|+..|+++++.  +++.++++||.+|
T Consensus        20 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4666776666    46777777777777664  46777777777777777777777777776644  5677777777777


Q ss_pred             HcCCccCHHHHHHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~  199 (342)
                      .  ..+++++|+.+|+++++
T Consensus        96 ~--~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           96 T--NEHNANAALASLRAWLL  113 (121)
T ss_dssp             H--HHHHHHHHHHHHHHHHC
T ss_pred             H--HcCCHHHHHHHHHHHHH
Confidence            7  66677777777777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.10  E-value=9.8e-10  Score=87.68  Aligned_cols=109  Identities=11%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--------------------GSTLAMVDAGLMYWEMDKKEAAISL  159 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--------------------~~~~a~~~lg~~~~~~~~~~~A~~~  159 (342)
                      .+..+..+|..+..    .+++++|+.+|.+|+..                    .++.+++++|.+|...|++++|+.+
T Consensus        10 ~a~~~~~~G~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A           10 SVEALRQKGNELFV----QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            45677888988888    58999999999999875                    1346778888888888888888888


Q ss_pred             HHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCH-HHHHHHHHHHh
Q 019340          160 YRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHV-RAQYQLALCLH  214 (342)
Q Consensus       160 ~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~-~a~~~lg~~~~  214 (342)
                      +++++..  +++.+++.+|.+|.  ..+++++|+.+|+++++.  +++ .+...|+.+..
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARI--AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHH--HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            8888754  67888888888888  778888888888887764  355 44556665553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3.9e-09  Score=81.96  Aligned_cols=110  Identities=17%  Similarity=0.051  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--D---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQY  207 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~  207 (342)
                      .++..++.+|..+...|++++|+.+|+++++..  +   ..+++++|.+|.  ..+++++|+.+|+++++.  .++.+++
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL--KLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            467888999999999999999999999999773  3   788999999998  888999999999998774  5788999


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          208 QLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      .+|.+|..    .+++++|+.+|++++..  .+..++..++.+..
T Consensus       104 ~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEK----LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHH----HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            99999887    67889999999988775  46777777777653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.10  E-value=1.7e-09  Score=83.29  Aligned_cols=94  Identities=23%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+..++.+|.++..    .+++++|+.+|++++..  .++.+++++|.++...|++++|+.+|++++..  +++.+++++
T Consensus         8 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            8 SAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            56666677776666    46777777777776664  35666777777777777777777777776643  556677777


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHH
Q 019340          176 GISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      |.+|.  ..+++++|+.+|+++++
T Consensus        84 ~~~~~--~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQL--EMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             HHHHH--HHhhHHHHHHHHHHHHH
Confidence            77776  66677777777776654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.10  E-value=6.5e-10  Score=84.51  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      .++.+|.++...|++++|+..|++++..  +++.+++.+|.++.  ..+++++|+.+|+++++.  +++.++++||.+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA--ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3577888888899999999999998754  78899999999998  888999999999998774  58889999999988


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHCC
Q 019340          215 RGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      .    .+++++|+.+|+++++..
T Consensus        97 ~----~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           97 N----EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             H----HHHHHHHHHHHHHHHC--
T ss_pred             H----cCCHHHHHHHHHHHHHhC
Confidence            7    678899999999988754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.09  E-value=1.9e-09  Score=84.67  Aligned_cols=130  Identities=16%  Similarity=0.147  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVR  204 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~  204 (342)
                      ..++..+|.+|...|++++|+.+|+++++.    +++    .++.++|.++.  ..+++++|+.+|+++++.    +++.
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            345677888888888888888888887754    222    36666777777  667777777777776542    1100


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc----CC----HH
Q 019340          205 AQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC----GH----GK  276 (342)
Q Consensus       205 a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~  276 (342)
                                                      ....+++++|.+|..    .+++++|+.+++++++.    ++    ..
T Consensus        87 --------------------------------~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           87 --------------------------------VEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------------------------------HHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence                                            002344455555533    11555666665555432    12    45


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          277 AQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       277 a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ++.++|.++...|++++|..+++++++.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6788899999999999999999988765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.09  E-value=2.1e-09  Score=81.33  Aligned_cols=108  Identities=14%  Similarity=0.187  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC-------H
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P  169 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~  169 (342)
                      +..++.+|.++..    .+++++|+.+|++++..  .++.+++.+|.+|...|++++|+.+|+++++.  .+       +
T Consensus         4 ~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            4556677777766    46777777777777764  36677777777777777777777777777654  22       6


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQLALCLH  214 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~  214 (342)
                      .+++++|.+|.  ..+++++|+.+|+++++.. ++.....++.+..
T Consensus        80 ~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  123 (131)
T 1elr_A           80 KAYARIGNSYF--KEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            67777777777  6677777777777766642 5566666665553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=2.1e-09  Score=82.71  Aligned_cols=96  Identities=21%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLA  210 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg  210 (342)
                      .++..++.+|.++...|++++|+.+|++++..  .++.+++++|.++.  ..+++++|+.+|++++..  +++.+++++|
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            46778888999998899999999999988764  67888888998888  788888999999888764  5788888888


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          211 LCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       211 ~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+|..    .+++++|+.+|+++++.
T Consensus        85 ~~~~~----~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLE----MESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH----HhhHHHHHHHHHHHHHH
Confidence            88887    67888888888888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.06  E-value=3.9e-08  Score=87.62  Aligned_cols=218  Identities=7%  Similarity=-0.091  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc
Q 019340          120 NLDKALDSFLKGAARG--STLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA  185 (342)
Q Consensus       120 ~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~  185 (342)
                      -.++|+.++.+++..+  +..+++.-+.++...++          +++++.++..++..  .+..+|.+.+.++..-...
T Consensus        45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence            3457999999999974  88999999988877655          68999999998854  7899999999998832222


Q ss_pred             CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC-------
Q 019340          186 NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFN-LQEAARWYLRAAEG--GYVRAMYNTSLCYSFGE-------  253 (342)
Q Consensus       186 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~-------  253 (342)
                      ++++++.++.++++.  .+..|++.-+.++..    .+. .++++.++.++++.  .+..||++.+.++..-.       
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~----l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~  200 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  200 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence            689999999999885  589999999999876    333 68999999999986  68899999998875421       


Q ss_pred             -C--CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhc-----------CCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 019340          254 -G--LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTE-----------GEMMKAVVYLELATRAGETAADHVKNVIL  317 (342)
Q Consensus       254 -g--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~-----------~~~~~A~~~~~~a~~~~~~~a~~~~~~~~  317 (342)
                       +  ....+++++.++.+++..  ++..+++.+..++...           +.+++++.++...++..|......++.+.
T Consensus       201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~  280 (331)
T 3dss_A          201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL  280 (331)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence             0  114689999999999875  7788887666666554           45899999999999998776666655543


Q ss_pred             h--hc-ChhcHHHHHHHHHhhhcCCCC
Q 019340          318 Q--QL-SATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       318 ~--~~-~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .  .+ ..+..++....+.++.+..|-
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          281 LMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             HHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             HHHhhcccccHHHHHHHHHHHHHhCcc
Confidence            2  11 234566777788888777764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.06  E-value=3.9e-09  Score=79.89  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC-------HHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH-------VRA  205 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~-------~~a  205 (342)
                      +.+++.+|.++...|++++|+.+|+++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  .+       +.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF--EKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            467788999999999999999999998865  67888999999998  788999999999988764  23       777


Q ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Q 019340          206 QYQLALCLHRGRGVDFNLQEAARWYLRAAEG-GYVRAMYNTSLCY  249 (342)
Q Consensus       206 ~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~y  249 (342)
                      ++++|.+|..    .+++++|+.+|+++++. .++.....++.+.
T Consensus        82 ~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  122 (131)
T 1elr_A           82 YARIGNSYFK----EEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            8888888876    66788888888888775 3556666666655

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.05  E-value=2.7e-09  Score=85.06  Aligned_cols=95  Identities=19%  Similarity=0.122  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--------------------GDPAGQFNLGISYLQAQPANAEEAVKLLY  195 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------------------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~  195 (342)
                      .+..+...|..++..|++++|+.+|.+++..                    .++.+++++|.+|.  ..+++++|+.+++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~~~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL--NIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            4567889999999999999999999999864                    23456777777777  6677777777777


Q ss_pred             HHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          196 QASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       196 ~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      ++++.  .++.+++.+|.+|..    .+++++|+.+|++++..
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhc
Confidence            76653  466777777777766    55677777777776655

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.05  E-value=1.7e-09  Score=85.46  Aligned_cols=92  Identities=16%  Similarity=0.027  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C-------CH-----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc---
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--G-------DP-----AGQFNLGISYLQAQPANAEEAVKLLYQASIA---  200 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~-------~~-----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~---  200 (342)
                      ..+.+.|..++..|++++|+..|++|++.  .       +.     .++.++|.++.  ..+++++|+.+|.++++.   
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~--~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA--GLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhhhc
Confidence            44455566665666666666666665533  2       22     25666666666  556666666666665543   


Q ss_pred             ------CCHHHH----HHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          201 ------GHVRAQ----YQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       201 ------~~~~a~----~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                            +++.++    ++.|.++..    .+++++|+..|++|++
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence                  344555    555555554    4455555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.04  E-value=2.9e-09  Score=80.99  Aligned_cols=92  Identities=18%  Similarity=0.148  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---HHHH
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---PAGQ  172 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---~~a~  172 (342)
                      +++.+|.++..    .+++++|+..|++++..  +++   .+++.+|.+|...|++++|+.+|+++++.  ++   +.++
T Consensus         4 ~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            4 TAYNVAFDALK----NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            34566666666    46777777777777663  233   56677777777777777777777776653  44   6667


Q ss_pred             HHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          173 FNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       173 ~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      +.+|.+|.  ..+++++|+.+|+++++.
T Consensus        80 ~~la~~~~--~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           80 LKLGLSQY--GEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HcCCHHHHHHHHHHHHHH
Confidence            77777776  666777777777776653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.04  E-value=1.4e-09  Score=80.04  Aligned_cols=95  Identities=13%  Similarity=0.038  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C--CHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--G--DPAGQF  173 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~--~~~a~~  173 (342)
                      ++.+++.+|.++..    .+++++|+.+|+++++.  .+..+++.+|.++...|++++|+.+|+++++.  .  ++.+++
T Consensus         5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            5 NPEEYYLEGVLQYD----AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             STTGGGGHHHHHHS----SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            34555666666666    46777777777776664  35666667777777777777777777776654  4  566666


Q ss_pred             HHHHHHHcCCc-cCHHHHHHHHHHHHHc
Q 019340          174 NLGISYLQAQP-ANAEEAVKLLYQASIA  200 (342)
Q Consensus       174 ~Lg~~~~~g~~-~~~~~A~~~~~~a~~~  200 (342)
                      ++|.++.  .. +++++|+.+|++++..
T Consensus        81 ~l~~~~~--~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           81 AKADALR--YIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHT--TCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHH--HHhCCHHHHHHHHHHHhhc
Confidence            6776666  66 6666777766666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.04  E-value=2e-09  Score=101.12  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC---------------HHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD---------------PAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      .+.++.++|.++...|++++|+.+|++|++.  .+               ..+++++|.+|.  ..+++++|+.+|++++
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL--KLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHH
Confidence            3444444444444444444444444444432  22               344455555555  4445555555555544


Q ss_pred             Hc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q 019340          199 IA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYS  250 (342)
Q Consensus       199 ~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~  250 (342)
                      +.  .++.+++++|.+|..    .+++++|+.+|++|++.  .+..++.+++.++.
T Consensus       345 ~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          345 GLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            42  344555555555544    44455555555555444  23444455555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.04  E-value=2.2e-09  Score=84.85  Aligned_cols=95  Identities=9%  Similarity=-0.003  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---------CH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---------ST-----LAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~-----~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      .+..+..+|..+..    .+++++|+..|++|++..         +.     .++.++|.++...|++++|+..|.+|++
T Consensus        10 ~a~~~~~~G~~l~~----~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45667888999888    589999999999999863         22     3899999999999999999999999986


Q ss_pred             C---------CCHHHH----HHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          166 L---------GDPAGQ----FNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       166 ~---------~~~~a~----~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      .         +++.+|    +++|.++.  ..+++++|+.+|+++++.
T Consensus        86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~--~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           86 YFNRRGELNQDEGKLWISAVYSRALALD--GLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred             hhhccccCCCchHHHHHHHHHhHHHHHH--HCCCHHHHHHHHHHHHhc
Confidence            5         668899    99999999  999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.02  E-value=3.9e-09  Score=80.27  Aligned_cols=93  Identities=17%  Similarity=0.090  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---HHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---VRAQY  207 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---~~a~~  207 (342)
                      .+++.+|.++...|++++|+..|+++++.  +++   .+++.+|.++.  ..+++++|+.+|+++++.  ++   +.+++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY--ATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            35678889999999999999999998864  555   78889999998  888999999999998774  45   78888


Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          208 QLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+|.+|..    .+++++|+.+|++++..
T Consensus        81 ~la~~~~~----~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           81 KLGLSQYG----EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            88888887    67888888888888765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.02  E-value=4.9e-09  Score=98.40  Aligned_cols=119  Identities=13%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC---------------HHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 019340          167 GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH---------------VRAQYQLALCLHRGRGVDFNLQEAARW  229 (342)
Q Consensus       167 ~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~  229 (342)
                      ..+.++.++|.+++  ..+++++|+.+|+++++.  .+               ..+++++|.||..    .+++++|+.+
T Consensus       266 ~~a~~~~~~G~~~~--~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~g~~~~A~~~  339 (457)
T 1kt0_A          266 EQAAIVKEKGTVYF--KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK----LREYTKAVEC  339 (457)
T ss_dssp             HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH
Confidence            34445555555555  444555555555554432  22               3445555555544    4445555555


Q ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHH
Q 019340          230 YLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       230 ~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      |++|++.  .++.+++++|.+|.. .|   ++++|+.+|+++++.  ++..++.+|+.++...+++++|.
T Consensus       340 ~~~al~~~p~~~~a~~~~g~a~~~-~g---~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYRRGEAQLL-MN---EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHH-cc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555443  344455555555533 11   555555555555443  23344455555555544444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.01  E-value=1.2e-09  Score=98.38  Aligned_cols=149  Identities=12%  Similarity=0.029  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG  216 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g  216 (342)
                      +..+..+|..+...|++++|+.+|++++........      +.  ..+++.++...+.       ..+++++|.||.. 
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------~~--~~~~~~~~~~~l~-------~~~~~nla~~~~~-  242 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM------FQ--LYGKYQDMALAVK-------NPCHLNIAACLIK-  242 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH------HT--CCHHHHHHHHHHH-------THHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh------hh--hcccHHHHHHHHH-------HHHHHHHHHHHHH-
Confidence            456777888888888888888888888766544331      11  2333344333321       2356677777765 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHh-hhcCCH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL-FTEGEM  291 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~-~~~~~~  291 (342)
                         .+++++|+.+|+++++.  .+..+++++|.+|.. .|   ++++|+.+|++++..  ++..++.+|+.+. ...+..
T Consensus       243 ---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g---~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          243 ---LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LG---QMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             ---TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHTTC-----------------------
T ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence               55677777777777664  456677777777743 22   777777777777544  4556666666663 334566


Q ss_pred             HHHHHHHHHHHHcCcHH
Q 019340          292 MKAVVYLELATRAGETA  308 (342)
Q Consensus       292 ~~A~~~~~~a~~~~~~~  308 (342)
                      +++...|++++...+.+
T Consensus       316 ~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          316 QKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHhhCCCCCC
Confidence            66777777776665443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.01  E-value=3.7e-09  Score=96.42  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----------------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----------------R--GSTLAMVDAGLMYWEMDKKEAAISLYRQ  162 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----------------~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~  162 (342)
                      +..+..+|..+..    .+++++|+..|++|++                .  .+..+++++|.+|...|++++|+.+|++
T Consensus       223 a~~~~~~g~~~~~----~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          223 SEDLKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3456677777776    4777777777777776                2  2445666777777777777777777777


Q ss_pred             HHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          163 AAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       163 a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      +++.  +++.+++++|.+|.  ..+++++|+.+|+++++.  ++..++..|+.++..
T Consensus       299 al~~~p~~~~a~~~lg~~~~--~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQ--GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            7654  55667777777776  666777777777776653  456666666666653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.00  E-value=2.5e-09  Score=78.68  Aligned_cols=95  Identities=17%  Similarity=0.031  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--C--CHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--G--HVRAQYQL  209 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~--~~~a~~~l  209 (342)
                      ++.+++.+|.++...|++++|+.+|+++++.  .++.+++++|.++.  ..+++++|+.+|+++++.  .  ++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY--NLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4556677888888888888888888887754  56777888888887  777888888888887764  4  67777777


Q ss_pred             HHHHhcCCCCC-CCHHHHHHHHHHHHHC
Q 019340          210 ALCLHRGRGVD-FNLQEAARWYLRAAEG  236 (342)
Q Consensus       210 g~~~~~g~~~~-~~~~~A~~~~~~A~~~  236 (342)
                      |.++..    . +++++|+.++++++..
T Consensus        83 ~~~~~~----~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           83 ADALRY----IEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHTT----CSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHH----HhCCHHHHHHHHHHHhhc
Confidence            777776    5 6777777777777654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.99  E-value=1.6e-09  Score=97.57  Aligned_cols=147  Identities=10%  Similarity=-0.015  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY  179 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~  179 (342)
                      .+..++.+|.++..    .+++++|+.+|++|+.......      .+...++++++...+.       ..+++++|.+|
T Consensus       178 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~Al~~~p~~~------~~~~~~~~~~~~~~l~-------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFK----EEKLEEAMQQYEMAIAYMGDDF------MFQLYGKYQDMALAVK-------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCS----SSCCHHHHHHHHHHHHHSCHHH------HHTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHhccch------hhhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence            45678899999988    6899999999999998754332      1223334444433322       12555566666


Q ss_pred             HcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC
Q 019340          180 LQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGL  255 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~  255 (342)
                      .  ..+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++.  ++..++.+|+.+.....  
T Consensus       241 ~--~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~--  312 (338)
T 2if4_A          241 I--KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK--  312 (338)
T ss_dssp             H--TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC----------------------
T ss_pred             H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--
Confidence            5  555666666666665543  355566666666655    45566666666665443  34555555555543322  


Q ss_pred             cccHHHHHHHHHHHHHc
Q 019340          256 PLSHRQARKWMKRAADC  272 (342)
Q Consensus       256 ~~~~~~A~~~~~~a~~~  272 (342)
                       ...+++...|++++..
T Consensus       313 -~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          313 -ALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             -----------------
T ss_pred             -HHHHHHHHHHHHhhCC
Confidence             2555555566555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=7.5e-08  Score=86.26  Aligned_cols=224  Identities=10%  Similarity=-0.098  Sum_probs=165.5

Q ss_pred             hHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcC-C-CHHH
Q 019340           80 QLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEM-D-KKEA  155 (342)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~-~-~~~~  155 (342)
                      ...+|...+...+..-++  +..+++..+.+....   ..++++++.++.+++..+  +..++...+.++... + ++++
T Consensus        69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l---~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSL---NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            345788777888877665  788888889888773   136999999999999874  899999999999887 7 8999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCH--------HHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCC---C
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANA--------EEAVKLLYQASIA--GHVRAQYQLALCLHRGRGV---D  220 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~--------~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~---~  220 (342)
                      ++.++.++++.  .+..++.+.+.+..  ..+.+        .+++.++.++++.  .+..|+++.+.++..-.+.   .
T Consensus       144 EL~~~~k~L~~dpkNy~AW~~R~wvl~--~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNYHTWAYLHWLYS--HFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHHTSSCTTCHHHHHHHHHHHH--HHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH--HhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence            99999999976  78899999998887  33333        3899999999885  5899999999998752211   1


Q ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC-CCCc---------------ccHHHHHHHHHHHHH--------cCC
Q 019340          221 FNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG-EGLP---------------LSHRQARKWMKRAAD--------CGH  274 (342)
Q Consensus       221 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g-~g~~---------------~~~~~A~~~~~~a~~--------~~~  274 (342)
                      ..++++++++.+++..  ++..+|+++..++... .+..               .....-.......+.        ...
T Consensus       222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  301 (349)
T 3q7a_A          222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV  301 (349)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence            1278999999999875  6889999988888653 2200               011222222222221        134


Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHH-HcCcHHHH
Q 019340          275 GKAQLEHGLGLFTEGEMMKAVVYLELAT-RAGETAAD  310 (342)
Q Consensus       275 ~~a~~~Lg~~~~~~~~~~~A~~~~~~a~-~~~~~~a~  310 (342)
                      .-++..|+.+|...|+.++|...|+... +.++....
T Consensus       302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~  338 (349)
T 3q7a_A          302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG  338 (349)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence            6788899999999999999999999987 44665544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.96  E-value=3.3e-10  Score=107.01  Aligned_cols=120  Identities=12%  Similarity=0.079  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      .+++.+|.++..    .+++++|+.+|++|++.  .++.+++++|.+|...|++++|+.+|+++++.  +++.+++++|.
T Consensus         7 ~~~~~lg~~~~~----~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            7 EELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             TTSSSSSSSTTT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344556666666    58999999999999986  47899999999999999999999999999976  77999999999


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHH--HhcCCCCCCCHHHHHHHHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALC--LHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~  231 (342)
                      +|.  ..+++++|+.+|+++++.  +++.++.+++.+  +..    .+++++|+..++
T Consensus        83 ~~~--~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~  134 (477)
T 1wao_1           83 SNM--ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDE  134 (477)
T ss_dssp             HHH--HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC-----
T ss_pred             HHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhcccc
Confidence            999  899999999999999874  578889999988  554    567888999988

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.96  E-value=2.2e-09  Score=80.73  Aligned_cols=88  Identities=14%  Similarity=0.096  Sum_probs=71.4

Q ss_pred             cCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHH
Q 019340          118 RKNLDKALDSFLKGAARG-----STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A  190 (342)
                      .+++++|+.+|+++++.+     ++.+++++|.+|...|++++|+.+|+++++.  +++.+++++|.++.  ..+++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY--NLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH--HcCCHHHH
Confidence            478889999999999873     4578899999999999999999999998865  78999999999999  88899999


Q ss_pred             HHHHHHHHHc--CCHHHHH
Q 019340          191 VKLLYQASIA--GHVRAQY  207 (342)
Q Consensus       191 ~~~~~~a~~~--~~~~a~~  207 (342)
                      +.+|++++..  +++....
T Consensus        81 ~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHH
Confidence            9999998764  5665543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.95  E-value=1.9e-08  Score=88.56  Aligned_cols=238  Identities=7%  Similarity=-0.040  Sum_probs=135.0

Q ss_pred             HHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340           69 LNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKH-GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMY  147 (342)
Q Consensus        69 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~-g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~  147 (342)
                      +-.+...|..|+++.+...    .........-...+.+-+.|.. |.     +....      .......+...++..+
T Consensus        17 lf~ikn~fy~G~yq~~i~e----~~~~~~~~~~~~~~~~~Rs~iAlg~-----~~~~~------~~~~~~~a~~~la~~~   81 (310)
T 3mv2_B           17 YFNIKQNYYTGNFVQCLQE----IEKFSKVTDNTLLFYKAKTLLALGQ-----YQSQD------PTSKLGKVLDLYVQFL   81 (310)
T ss_dssp             THHHHHHHTTTCHHHHTHH----HHTSSCCCCHHHHHHHHHHHHHTTC-----CCCCC------SSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHH----HHhcCccchHHHHHHHHHHHHHcCC-----CccCC------CCCHHHHHHHHHHHHh
Confidence            4456778899999999742    2322222333444444555544 22     11000      0111112222233332


Q ss_pred             hcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhcCCCCCC
Q 019340          148 WEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQLALCLHRGRGVDF  221 (342)
Q Consensus       148 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~  221 (342)
                       .. +   |+..+++.++.  .++.+.+.+|.++.  ..+++++|+.++.+.++.    ++.++...++.++..    .+
T Consensus        82 -~~-~---a~~~l~~l~~~~~~~~~~~~~la~i~~--~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~----~~  150 (310)
T 3mv2_B           82 -DT-K---NIEELENLLKDKQNSPYELYLLATAQA--ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL----NN  150 (310)
T ss_dssp             -TT-T---CCHHHHHTTTTSCCCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH----TT
T ss_pred             -cc-c---HHHHHHHHHhcCCCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH----CC
Confidence             21 1   66777776653  45566677777777  677888888888877665    356777777777776    66


Q ss_pred             CHHHHHHHHHHHHHCCC------HHHHHHHHHH--HH-cCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhc
Q 019340          222 NLQEAARWYLRAAEGGY------VRAMYNTSLC--YS-FGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTE  288 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~~~------~~a~~~lg~~--y~-~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~  288 (342)
                      +.++|.+.+++..+...      -....+|+..  .. .|.+   ++.+|...|++..+..+    ...+++   ++...
T Consensus       151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~---~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~  224 (310)
T 3mv2_B          151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE---TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ  224 (310)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS---TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc
Confidence            77888888877655543      3344454433  22 2222   67777888888766532    223333   67777


Q ss_pred             CCHHHHHHHHHHHHHc------------CcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCCC
Q 019340          289 GEMMKAVVYLELATRA------------GETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSLH  342 (342)
Q Consensus       289 ~~~~~A~~~~~~a~~~------------~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  342 (342)
                      |++++|...++...+.            +++++..++..+...+  ++  ++.++.+++++.+|.|
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCC
Confidence            8888888888765442            2344443333333333  22  5667777777777765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.95  E-value=9.8e-09  Score=93.64  Aligned_cols=135  Identities=16%  Similarity=0.074  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG  216 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g  216 (342)
                      +..+..+|..+...|++++|+..|+++++......        .   ..+.+++..     ..+.++.+++++|.+|.. 
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------~---~~~~~~~~~-----~~~~~~~~~~nla~~~~~-  285 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------A---AAEDADGAK-----LQPVALSCVLNIGACKLK-  285 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------H---HSCHHHHGG-----GHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------c---ccChHHHHH-----HHHHHHHHHHHHHHHHHh-
Confidence            45688899999999999999999999987310000        0   000000000     112234455555555554 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~  292 (342)
                         .+++++|+.+|++|++.  .++.+++++|.+|.. .   +++++|+.+|++|++.  ++..++..|+.++...++.+
T Consensus       286 ---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~---g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          286 ---MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-L---KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             ---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-c---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence               44555555555555544  345555555555543 1   2555555555555544  34555555555555555555


Q ss_pred             HHH
Q 019340          293 KAV  295 (342)
Q Consensus       293 ~A~  295 (342)
                      ++.
T Consensus       359 ~a~  361 (370)
T 1ihg_A          359 DKE  361 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=4.2e-10  Score=106.28  Aligned_cols=90  Identities=20%  Similarity=0.135  Sum_probs=50.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      ++.+|.++...|++++|+.+|+++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.+|..
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            445555666666666666666666543  45566666666666  556666666666666553  345555555555544


Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q 019340          216 GRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~  235 (342)
                          .+++++|+.+|+++++
T Consensus        87 ----~g~~~eA~~~~~~al~  102 (477)
T 1wao_1           87 ----LGKFRAALRDYETVVK  102 (477)
T ss_dssp             ----HTCHHHHHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHHHHHH
Confidence                3444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.87  E-value=9.1e-08  Score=92.08  Aligned_cols=169  Identities=7%  Similarity=-0.155  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP  184 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~  184 (342)
                      .-.++|++++.+++..  .+..+|+..+.++...++          +++++.++.++++.  .+..+|++.+.++.  ..
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~--~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS--RL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TC
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hc
Confidence            3457899999999986  488999999999988877          99999999999865  78999999999998  66


Q ss_pred             c--CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---
Q 019340          185 A--NAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDF-NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG---  254 (342)
Q Consensus       185 ~--~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g---  254 (342)
                      +  ++++++.++.++++.  .+..||+.-+.++..    .+ .++++++++.++++.  .+..||++.|.++..-.+   
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~----l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~  196 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQ----AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH----cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence            6  779999999999886  489999999999876    33 789999999999987  588999999999754100   


Q ss_pred             -------CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHH
Q 019340          255 -------LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMK  293 (342)
Q Consensus       255 -------~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~  293 (342)
                             ....++++++++.+|+..  ++..+++.++.++...+.+++
T Consensus       197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                   135789999999999875  678999999999988777554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.81  E-value=4.7e-07  Score=81.11  Aligned_cols=218  Identities=8%  Similarity=-0.124  Sum_probs=161.3

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc-c-CHHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP-A-NAEEAV  191 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~-~-~~~~A~  191 (342)
                      ...++|+.++.+++..  .+..+++..+.++...+ ++++++.++.+++..  .+..++...+.++.  .. + ++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~--~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD--RISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH--HHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HhcCCChHHHH
Confidence            3456799999999987  48999999999999988 699999999999965  78999999999998  44 4 789999


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC---CcccHH
Q 019340          192 KLLYQASIA--GHVRAQYQLALCLHRGRGV----DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEG---LPLSHR  260 (342)
Q Consensus       192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~----~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g---~~~~~~  260 (342)
                      .++.++++.  .+..+++.-+.++..-...    .....+++.++.++++.  .+..||++.+.++..-.+   ....++
T Consensus       146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~  225 (349)
T 3q7a_A          146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ  225 (349)
T ss_dssp             HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence            999999875  4889999888887541100    11234899999999986  588999999999854321   122378


Q ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCH--------------------HHHHHHHHHHHH--------cCcHHHH
Q 019340          261 QARKWMKRAADC--GHGKAQLEHGLGLFTEGEM--------------------MKAVVYLELATR--------AGETAAD  310 (342)
Q Consensus       261 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~--------------------~~A~~~~~~a~~--------~~~~~a~  310 (342)
                      +++.++++++..  ++..+++.+..++...|+.                    .+-.......+.        .....+.
T Consensus       226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  305 (349)
T 3q7a_A          226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL  305 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence            999999999876  7789998888888776643                    222222222222        1345666


Q ss_pred             HHHHHHHhhcChhcHHHHHHHHHhhh-cCCC
Q 019340          311 HVKNVILQQLSATSRDRAMLVVDSWR-AMPS  340 (342)
Q Consensus       311 ~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~  340 (342)
                      ..+.-++...  ++.++|.++++.+. +..|
T Consensus       306 ~~l~d~~~~~--~~~~~a~~~~~~l~~~~dp  334 (349)
T 3q7a_A          306 EYLADSFIEQ--NRVDDAAKVFEKLSSEYDQ  334 (349)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHhc--CCHHHHHHHHHHHHhhhCh
Confidence            6666666544  67788999888885 4444

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.80  E-value=1.7e-08  Score=79.56  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDK----------KEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP  184 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~  184 (342)
                      +.+++|+..|+++++.  +++++++++|.++...++          +++|+..|++|++.  ++++++++||.+|.  ..
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~--~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT--SF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--Hh
Confidence            3567788888888875  478888888888877765          45888888888755  67888888888887  33


Q ss_pred             -----------cCHHHHHHHHHHHHHcC
Q 019340          185 -----------ANAEEAVKLLYQASIAG  201 (342)
Q Consensus       185 -----------~~~~~A~~~~~~a~~~~  201 (342)
                                 +++++|+.+|++|++.+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence                       47888888888887653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.77  E-value=1.3e-07  Score=83.10  Aligned_cols=174  Identities=7%  Similarity=-0.105  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          124 ALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       124 A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      |+..|++.+..  .+..+.+.+|.++...|++++|+.++.+.+..    ++.+++..++.++.  ..++++.|.+.+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L--~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL--LNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence            77888887764  46667789999999999999999999999876    46788888999999  888999999999987


Q ss_pred             HHcCC------HHHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCcccHHHHHHH
Q 019340          198 SIAGH------VRAQYQLALC--LHRGRGVDFNLQEAARWYLRAAEGGY----VRAMYNTSLCYSFGEGLPLSHRQARKW  265 (342)
Q Consensus       198 ~~~~~------~~a~~~lg~~--~~~g~~~~~~~~~A~~~~~~A~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~  265 (342)
                      .+...      -....+|+..  ....+  ..++.+|+..|+++.+...    +...++   ++.. .|   ++++|...
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g--~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~-~g---~~~eAe~~  233 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATN--KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ-QR---NIAEAQGI  233 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHT--CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH-HT---CHHHHHHH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH-cC---CHHHHHHH
Confidence            66543      3445555533  32211  2368899999999877632    334444   4533 23   99999999


Q ss_pred             HHHHHH------------cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          266 MKRAAD------------CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       266 ~~~a~~------------~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                      ++...+            .+++.++.|+..+....|+  +|.++++++....|.++.
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence            986543            4578888898888888887  899999999988765544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.75  E-value=6.3e-09  Score=76.73  Aligned_cols=76  Identities=9%  Similarity=0.069  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC------HH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD------PA  170 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~------~~  170 (342)
                      +.+++.+|.++..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++|+.+|+++++.  ++      ..
T Consensus         4 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            4 FEKQKEQGNSLFK----QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            4556666666666    36666666666666664  35666666666666666666666666666654  33      55


Q ss_pred             HHHHHHHHHH
Q 019340          171 GQFNLGISYL  180 (342)
Q Consensus       171 a~~~Lg~~~~  180 (342)
                      +++.+|.++.
T Consensus        80 ~~~~~~~~~~   89 (111)
T 2l6j_A           80 LQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666666655

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.74  E-value=3e-08  Score=78.21  Aligned_cols=54  Identities=11%  Similarity=-0.023  Sum_probs=40.6

Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC-----------CHHHHHHHHHHHHHcCcHHHHH
Q 019340          258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG-----------EMMKAVVYLELATRAGETAADH  311 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~  311 (342)
                      .+++|+..|++|++.  ++..++++||.+|...|           ++++|+.+|++|+++++.+..+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            466888888888776  45777888888887764           7888888888888887665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.73  E-value=6.7e-07  Score=87.53  Aligned_cols=211  Identities=9%  Similarity=-0.052  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHH-HHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 019340          122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAI-SLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQ  196 (342)
Q Consensus       122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~-~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~  196 (342)
                      +.....|++|+..  .+++.|+..+..+...|+.++|+ ..|++|+..  .+...+..++.+..  ..+++++|...|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee--~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE--LNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHH
Confidence            3456788888875  47889999999888888888997 999998865  44555566666666  67789999999998


Q ss_pred             HHHcC------------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC-C--CHHHHHHHHHHH
Q 019340          197 ASIAG------------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG-G--YVRAMYNTSLCY  249 (342)
Q Consensus       197 a~~~~------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~-~--~~~a~~~lg~~y  249 (342)
                      +++..                        .+.++...+.+...    .++.+.|...|.+|.+. .  ....+...+.+-
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR----~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE  479 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR----IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE  479 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            87631                        12345555555544    45688999999999876 3  345555555554


Q ss_pred             HcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HH-HHHHHHHHhhcChhc
Q 019340          250 SFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AA-DHVKNVILQQLSATS  324 (342)
Q Consensus       250 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a-~~~~~~~~~~~~~~~  324 (342)
                      ....   ++.+.|...|+++++.  .++..+...+......|+.+.|..+|++|+...++  .. ......+.-....|+
T Consensus       480 ~~~~---~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~  556 (679)
T 4e6h_A          480 YHIS---KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS  556 (679)
T ss_dssp             HTTT---SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred             HHhC---CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence            3322   2689999999999886  55666667777777789999999999999987652  22 122222222233466


Q ss_pred             HHHHHHHHHhhhcCCCC
Q 019340          325 RDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       325 ~~~a~~~~~~~~~~~~~  341 (342)
                      .+.++.+.++.....|.
T Consensus       557 ~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          557 LNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             SHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            77788888777665553

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.73  E-value=4.6e-08  Score=73.35  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHH
Q 019340          220 DFNLQEAARWYLRAAEGG-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~  292 (342)
                      .+++++|+.+|+++++.+     ++.+++++|.+|..    .+++++|+.+|+++++.  +++.+++++|.++...|+++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~   78 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE   78 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence            356677777777777663     35677888888854    22888888888888775  56788888898888889999


Q ss_pred             HHHHHHHHHHHcC
Q 019340          293 KAVVYLELATRAG  305 (342)
Q Consensus       293 ~A~~~~~~a~~~~  305 (342)
                      +|+.+|+++++..
T Consensus        79 ~A~~~~~~al~~~   91 (117)
T 3k9i_A           79 QGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999998888774

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.71  E-value=2.3e-07  Score=69.10  Aligned_cols=88  Identities=17%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      +|+..|+++++.  +++.+++.+|.+|...|++++|+.+|+++++.  .++.+++++|.+|.  ..+++++|+.+|++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ--GQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence            477788888775  47788888888888888888888888888754  66788888888888  7788888888888876


Q ss_pred             Hc----CCHHHHHHHHHH
Q 019340          199 IA----GHVRAQYQLALC  212 (342)
Q Consensus       199 ~~----~~~~a~~~lg~~  212 (342)
                      +.    ++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           81 AAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HhccccccHHHHHHHHHH
Confidence            53    344444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.70  E-value=1.7e-07  Score=66.21  Aligned_cols=73  Identities=23%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                      +++.+|.++...|++++|+.+|+++++.  +++.+++++|.++.  ..+++++|+.+|+++++.  +++.++.++|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY--KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3444444444444444444444444332  33444444444444  444444444444444332  3444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.66  E-value=5.4e-07  Score=86.70  Aligned_cols=163  Identities=8%  Similarity=-0.129  Sum_probs=135.7

Q ss_pred             HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCC----------HHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340           82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKN----------LDKALDSFLKGAAR--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~----------~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~  149 (342)
                      .+|...+...+..-++  +..+++.-|.++..    .++          +++++.++.++++.  .+..+|++.+.++..
T Consensus        46 eeal~~~~~~l~~nP~--~~taW~~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           46 ESVLELTSQILGANPD--FATLWNCRREVLQH----LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCch--hHHHHHHHHHHHHh----cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3667777777777655  78888888988877    233          89999999999986  489999999999999


Q ss_pred             CC--CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCcc-CHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcC-CC---
Q 019340          150 MD--KKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPA-NAEEAVKLLYQASIA--GHVRAQYQLALCLHRG-RG---  218 (342)
Q Consensus       150 ~~--~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~-~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g-~~---  218 (342)
                      .+  ++++++.++.++++.  .+..||.+.+.+..  ..+ .++++++++.++++.  .+..||++.|.++..- ..   
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~--~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAA--QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccccHHHHHHHHHHHHhhccccccHHHHHHHHHH--HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            99  779999999999866  78999999999988  666 899999999999875  5899999999987641 10   


Q ss_pred             ------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340          219 ------VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG  252 (342)
Q Consensus       219 ------~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g  252 (342)
                            ....++++++++.+|+..  ++..+|++++.++..+
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence                  124589999999999975  6889999999999653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.65  E-value=2.6e-07  Score=65.20  Aligned_cols=77  Identities=21%  Similarity=0.334  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+.+++.+|.++..    .+++++|+.+|+++++.  +++.+++.+|.++...|++++|+.+|+++++.  +++.++.++
T Consensus         8 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            8 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            46788999999988    58999999999999986  58899999999999999999999999999865  789999999


Q ss_pred             HHHHH
Q 019340          176 GISYL  180 (342)
Q Consensus       176 g~~~~  180 (342)
                      |.++.
T Consensus        84 ~~~~~   88 (91)
T 1na3_A           84 GNAKQ   88 (91)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.62  E-value=3.1e-07  Score=67.38  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC------HHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH------VRA  205 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~------~~a  205 (342)
                      ++.+++.+|.++...|++++|+.+|+++++.  .++.+++++|.++.  ..+++++|+.+|+++++.  ++      ..+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI--KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            3567788888888888888888888888754  67888888888888  788888888888888774  34      667


Q ss_pred             HHHHHHHHhc
Q 019340          206 QYQLALCLHR  215 (342)
Q Consensus       206 ~~~lg~~~~~  215 (342)
                      ++.+|.++..
T Consensus        81 ~~~~~~~~~~   90 (111)
T 2l6j_A           81 QYRLELAQGA   90 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.60  E-value=3.3e-07  Score=66.68  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAA  164 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~  164 (342)
                      ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|.+|...|++++|+.+|++++
T Consensus         6 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLK----HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555555555555    35555555555555553  244555555555555555555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.60  E-value=3.5e-07  Score=66.51  Aligned_cols=78  Identities=13%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQYQ  208 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~  208 (342)
                      +++.+++.+|.+|...|++++|+.+|+++++.  +++.+++++|.+|.  ..+++++|+.+|+++++.    ++..+...
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE--RLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            56778888888888888888888888888754  66788888888888  778888888888887753    45555555


Q ss_pred             HHHHHh
Q 019340          209 LALCLH  214 (342)
Q Consensus       209 lg~~~~  214 (342)
                      +..++.
T Consensus        83 l~~~l~   88 (100)
T 3ma5_A           83 LQDAKL   88 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.56  E-value=1e-06  Score=65.43  Aligned_cols=76  Identities=16%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 019340          155 AAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWY  230 (342)
Q Consensus       155 ~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~  230 (342)
                      +|+..|+++++.  +++.+++++|.+|.  ..+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA--EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence            577788888754  67888888888888  778888888888888764  577888888888876    66788888888


Q ss_pred             HHHHHC
Q 019340          231 LRAAEG  236 (342)
Q Consensus       231 ~~A~~~  236 (342)
                      +++++.
T Consensus        77 ~~al~~   82 (115)
T 2kat_A           77 ESGLAA   82 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.47  E-value=1.3e-06  Score=82.38  Aligned_cols=110  Identities=8%  Similarity=-0.007  Sum_probs=67.9

Q ss_pred             cCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGI  177 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~  177 (342)
                      .+++++|+.+|+++++.       +|+   .++.+||.+|...|++++|+.+++++++.       ++|   ..+.+||.
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            36777777777777653       233   34567777777777777777777777632       333   45667777


Q ss_pred             HHHcCCccCHHHHHHHHHHHHH-------cCCH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASI-------AGHV---RAQYQLALCLHRGRGVDFNLQEAARWYLRA  233 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~-------~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A  233 (342)
                      +|.  ..|++++|+.+|++|++       +++|   +...+|+.++..    .+.+++|...|.++
T Consensus       402 ~~~--~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e----~~~~~~ae~~~~~~  461 (490)
T 3n71_A          402 TNW--HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME----LRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHH--HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            777  66777777777777654       2233   333455555544    33455555555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.42  E-value=4e-05  Score=75.00  Aligned_cols=210  Identities=5%  Similarity=-0.157  Sum_probs=154.8

Q ss_pred             hhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHH-HHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHH
Q 019340           83 AASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKAL-DSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISL  159 (342)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~-~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~  159 (342)
                      +...++.+.+...+.  .+..++..+..+..    .++.++|. ..|++|+..  .+...++..+.+....|++++|...
T Consensus       327 Rv~~~Ye~aL~~~p~--~~~lW~~ya~~~~~----~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i  400 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCF--APEIWFNMANYQGE----KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT  400 (679)
T ss_dssp             HHHHHHHHHHHHTTT--CHHHHHHHHHHHHH----HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--CHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            445566777776655  77888888888777    35677897 999999985  3666778899999999999999999


Q ss_pred             HHHHHhCC------------------------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-C--CHHHHHHHHHH
Q 019340          160 YRQAAVLG------------------------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIA-G--HVRAQYQLALC  212 (342)
Q Consensus       160 ~~~a~~~~------------------------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~--~~~a~~~lg~~  212 (342)
                      |+++++..                        .+..|...+.+..  ..++.+.|...|.+|++. .  ....+...+.+
T Consensus       401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er--R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l  478 (679)
T 4e6h_A          401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK--RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI  478 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            99998631                        1234555555544  567899999999999986 3  45666666666


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHh
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-----GKAQLEHGLGL  285 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----~~a~~~Lg~~~  285 (342)
                      -..   ..++.+.|...|+++++.  .++..+...+.+... .   .+.+.|..+|++|+....     ...+......-
T Consensus       479 E~~---~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~-~---~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE  551 (679)
T 4e6h_A          479 EYH---ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY-V---NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE  551 (679)
T ss_dssp             HHT---TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H---TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred             HHH---hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-C---CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            544   134689999999999986  566665555554432 2   389999999999998643     23444555555


Q ss_pred             hhcCCHHHHHHHHHHHHHcCcH
Q 019340          286 FTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       286 ~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      ...|+.+.+...++++.+.-|.
T Consensus       552 ~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          552 SKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Confidence            6689999999999999987654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.35  E-value=7.7e-06  Score=77.02  Aligned_cols=126  Identities=7%  Similarity=-0.152  Sum_probs=70.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH--
Q 019340          143 AGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV--  203 (342)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~--  203 (342)
                      .+..+...|++++|+.+|+++++.       +++   ..+.+||.+|.  ..|++++|+.+++++++.       ++|  
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~--~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS--YLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            334455677777777777777642       233   46667777777  677777777777776541       222  


Q ss_pred             -HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH---HHHH
Q 019340          204 -RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG---KAQL  279 (342)
Q Consensus       204 -~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~  279 (342)
                       ..+++||.+|..    .+++++|+.+|++|++.                             +++..-.+|+   +...
T Consensus       393 a~~l~nLa~~~~~----~G~~~eA~~~~~~Al~i-----------------------------~~~~lG~~Hp~~~~~~~  439 (490)
T 3n71_A          393 GMAVMRAGLTNWH----AGHIEVGHGMICKAYAI-----------------------------LLVTHGPSHPITKDLEA  439 (490)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-----------------------------HHHHTCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-----------------------------HHHHhCCCChHHHHHHH
Confidence             234455555544    33444444444444321                             0000001232   3345


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          280 EHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       280 ~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      +|+.++...+.+++|...|+++.+
T Consensus       440 ~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          440 MRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777777777643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.34  E-value=5e-06  Score=60.91  Aligned_cols=71  Identities=15%  Similarity=0.025  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL---------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQ  206 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~  206 (342)
                      .-++.||..+...+++..|+.||++|++.         ..++.+.+||.+|.  ..|++++|+.+++++++  ++++.+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~--~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY--QQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH--HccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34455555555555555555555555532         12445555555555  55555555555555543  3345555


Q ss_pred             HHHH
Q 019340          207 YQLA  210 (342)
Q Consensus       207 ~~lg  210 (342)
                      .+++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.24  E-value=9.5e-06  Score=59.38  Aligned_cols=73  Identities=11%  Similarity=0.005  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD  168 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~  168 (342)
                      .+.-++.||..+..    .+++..|+.||++|++.         ..+..+..||.+|...|++++|+.+++++++.  ++
T Consensus         4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A            4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            46778999999999    69999999999999984         24678899999999999999999999999754  78


Q ss_pred             HHHHHHHH
Q 019340          169 PAGQFNLG  176 (342)
Q Consensus       169 ~~a~~~Lg  176 (342)
                      +.+..+++
T Consensus        80 ~~~~~n~~   87 (104)
T 2v5f_A           80 QRANGNLK   87 (104)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhHH
Confidence            88888887

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.24  E-value=3.4e-05  Score=69.15  Aligned_cols=163  Identities=13%  Similarity=0.008  Sum_probs=89.6

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVD  142 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~  142 (342)
                      ..++...+...+...-. ++  .........+...++.-+|.-|.-+... +...+..+|+.+|++|++.  +++.++..
T Consensus       163 Qdei~~~I~~aL~~~l~-~~--e~~r~~~~~p~~~~Aydl~Lra~~~l~~-~~~~~~~~A~~l~e~Al~lDP~~a~A~A~  238 (372)
T 3ly7_A          163 QNDLLESLSKALNQPWP-QR--MQETLQKILPHRGALLTNFYQAHDYLLH-GDDKSLNRASELLGEIVQSSPEFTYARAE  238 (372)
T ss_dssp             HHHHHHHHHHHTTCCCC-HH--HHHHHHHHSCSSGGGHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCchhh-HH--HHHHHhccCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44455555554443221 11  1123445556656677777777776652 3456678899999998876  46777777


Q ss_pred             HHHHHhcC---C--C---HHHHHHHHHHHH----hCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-CHHHHHHH
Q 019340          143 AGLMYWEM---D--K---KEAAISLYRQAA----VLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-HVRAQYQL  209 (342)
Q Consensus       143 lg~~~~~~---~--~---~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~l  209 (342)
                      ++.+|...   +  .   .......++.+.    ...++.++.-++.++.  ..+++++|+.++++++..+ +..++..+
T Consensus       239 la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l--~~gd~d~A~~~l~rAl~Ln~s~~a~~ll  316 (372)
T 3ly7_A          239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL--VKGKTDESYQAINTGIDLEMSWLNYVLL  316 (372)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            77776421   0  0   111111122111    1245555555555555  4566666666666666654 33444555


Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          210 ALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       210 g~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      |.++..    .++.++|++.|.+|+..+
T Consensus       317 G~~~~~----~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          317 GKVYEM----KGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHH----CCCHHHHHHHHHHHHhcC
Confidence            666654    556666666666666553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=4.2e-05  Score=59.57  Aligned_cols=98  Identities=11%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC----CHHHHHHHHHHhhhcCCHHHHH
Q 019340          222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG----HGKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      ....+.+.|.+....  .+.++.+++|+++.... .+.+.++++..|+..++.+    +.+++|+||..|+..+++++|+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~-~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSK-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            456777888887774  47889999999997633 3668889999999999876    3678999999999999999999


Q ss_pred             HHHHHHHHcCc--HHHHHHHHHHHhhc
Q 019340          296 VYLELATRAGE--TAADHVKNVILQQL  320 (342)
Q Consensus       296 ~~~~~a~~~~~--~~a~~~~~~~~~~~  320 (342)
                      .|++++++..|  ..|......+...+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999865  66776666655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.14  E-value=5.1e-06  Score=59.64  Aligned_cols=63  Identities=13%  Similarity=-0.060  Sum_probs=46.5

Q ss_pred             HHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHH-HHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          243 YNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGK-AQLEHGLGLFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      +..|.++..    .+++++|+.+|+++++.  .++. +++++|.+|...|++++|+.+|+++++.++.+.
T Consensus         4 ~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            4 LKTIKELIN----QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            445666643    33788888888888775  4567 888888888888888888888888888765443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.13  E-value=0.00012  Score=65.71  Aligned_cols=125  Identities=11%  Similarity=-0.090  Sum_probs=83.9

Q ss_pred             CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc--CCC-CCCCHHHHH-HHHHHHHH----CCCHHHHHHHHHHHHc
Q 019340          182 AQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHR--GRG-VDFNLQEAA-RWYLRAAE----GGYVRAMYNTSLCYSF  251 (342)
Q Consensus       182 g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~--g~~-~~~~~~~A~-~~~~~A~~----~~~~~a~~~lg~~y~~  251 (342)
                      +...+..+|+.+|+++++  ++++.++..++.+|..  +.+ ...+...++ ..+..+..    ..++.++..++.++..
T Consensus       210 ~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~  289 (372)
T 3ly7_A          210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV  289 (372)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence            345566788888888765  4577777777776641  111 111111221 12222111    2467777777776643


Q ss_pred             CCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHH
Q 019340          252 GEGLPLSHRQARKWMKRAADCG-HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAAD  310 (342)
Q Consensus       252 g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~  310 (342)
                          ..++++|+.++++|+..+ +..++..+|.++.-.|++++|...|++|++++|...-
T Consensus       290 ----~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          290 ----KGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             ----HTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             ----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence                239999999999999874 4566778999999999999999999999999876643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.11  E-value=1.3e-05  Score=57.45  Aligned_cols=56  Identities=11%  Similarity=0.015  Sum_probs=30.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPA-GQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~-a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      ..|.++...|++++|+..|+++++.  .++. +++++|.+|.  ..+++++|+.+|+++++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR--KLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Confidence            4455555555555555555555433  3445 5555555555  45555555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.03  E-value=1.5e-05  Score=73.85  Aligned_cols=80  Identities=18%  Similarity=0.060  Sum_probs=64.9

Q ss_pred             cCCHHHHHHHHHHHHhC-----C--CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAAR-----G--ST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGI  177 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~-----~--~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~  177 (342)
                      .+++++|+.+|+++++.     |  |+   .++.+||.+|...|++++|+.+|+++++.       ++|   ..+++||.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46899999999998873     2  43   45778999999999999999999998742       344   47888999


Q ss_pred             HHHcCCccCHHHHHHHHHHHHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +|.  ..|++++|+.+|++|++
T Consensus       391 ~~~--~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYM--GLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHH
T ss_pred             HHH--hccCHHHHHHHHHHHHH
Confidence            998  88899999999998875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.00  E-value=5.3e-05  Score=65.33  Aligned_cols=81  Identities=11%  Similarity=-0.031  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcC----CCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhh-cC
Q 019340          222 NLQEAARWYLRAAEGG----YVRAMYNTSLCYSFG----EGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFT-EG  289 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~~----~~~a~~~lg~~y~~g----~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~-~~  289 (342)
                      ...+|...+++|++.+    +..++..||.+|..-    .|   +.++|..+|++|++.+   +..+.+.+|..+.. .+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG---d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG---GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC---CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC---CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            3444444444444432    223455555555331    22   5666666666665542   24555555555544 35


Q ss_pred             CHHHHHHHHHHHHHcC
Q 019340          290 EMMKAVVYLELATRAG  305 (342)
Q Consensus       290 ~~~~A~~~~~~a~~~~  305 (342)
                      ++++|..++++|+...
T Consensus       255 d~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          255 NRAGFDEALDRALAID  270 (301)
T ss_dssp             CHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHcCC
Confidence            6666666666665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=0.00015  Score=56.46  Aligned_cols=87  Identities=17%  Similarity=0.088  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCC---CHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCccCHHHHH
Q 019340          121 LDKALDSFLKGAARG--STLAMVDAGLMYWEMD---KKEAAISLYRQAAVLG----DPAGQFNLGISYLQAQPANAEEAV  191 (342)
Q Consensus       121 ~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~---~~~~A~~~~~~a~~~~----~~~a~~~Lg~~~~~g~~~~~~~A~  191 (342)
                      ...+.+.|.+..+.+  +.++.+++|.++...+   +.++++..++..++.+    +.+++|+||..|+  ..+++++|+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~--kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--HTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH--HccCHHHHH
Confidence            444555566655533  5666777777776665   5557777777766554    2467777777776  666777777


Q ss_pred             HHHHHHHH--cCCHHHHHHH
Q 019340          192 KLLYQASI--AGHVRAQYQL  209 (342)
Q Consensus       192 ~~~~~a~~--~~~~~a~~~l  209 (342)
                      ++++++++  +++..|..-.
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHH
Confidence            77777655  3455554433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.91  E-value=7.2e-05  Score=69.25  Aligned_cols=79  Identities=14%  Similarity=-0.037  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR-------GST---LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDP---AGQFNLGIS  178 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~-------~~~---~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~  178 (342)
                      +++++|+..|+++++.       .++   .++.+||.+|...|++++|+.+++++++.       .+|   ..+++||.+
T Consensus       301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~  380 (429)
T 3qwp_A          301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL  380 (429)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence            5888888888888864       233   45678888888888888888888888742       344   467788888


Q ss_pred             HHcCCccCHHHHHHHHHHHHH
Q 019340          179 YLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      |.  ..|++++|+.+|+++++
T Consensus       381 ~~--~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          381 QL--HQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HH--HTTCHHHHHHHHHHHHH
T ss_pred             HH--hcCCHHHHHHHHHHHHH
Confidence            88  78888888888888865

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.90  E-value=7.9e-05  Score=69.00  Aligned_cols=81  Identities=9%  Similarity=-0.081  Sum_probs=47.5

Q ss_pred             cCCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 019340          149 EMDKKEAAISLYRQAAVL-------GDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV---RAQYQ  208 (342)
Q Consensus       149 ~~~~~~~A~~~~~~a~~~-------~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~  208 (342)
                      ..|++++|+.+|+++++.       +++   ..+.+||.+|.  ..|++++|+.+|+++++.       ++|   ..+++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~--~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL--YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            346667777777776642       232   45666666666  666777777777766541       232   34556


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      ||.+|..    .+++++|+.+|++|++
T Consensus       388 La~~~~~----qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          388 LGRLYMG----LENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh----ccCHHHHHHHHHHHHH
Confidence            6666655    4456666666666553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.85  E-value=0.0013  Score=62.11  Aligned_cols=162  Identities=12%  Similarity=-0.068  Sum_probs=123.5

Q ss_pred             CHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC-------ccCHHHHHHHHHHHHHcC---
Q 019340          136 STLA-MVDAGLMYWEMDKKEAAISLYRQAAVLG---DPAGQFNLGISYLQAQ-------PANAEEAVKLLYQASIAG---  201 (342)
Q Consensus       136 ~~~a-~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g~-------~~~~~~A~~~~~~a~~~~---  201 (342)
                      .+++ +..+=..+.+.|+.++|+++|++..+.|   +...+..|-.++..+.       .++.++|...|.+....|   
T Consensus        24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P  103 (501)
T 4g26_A           24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP  103 (501)
T ss_dssp             CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence            3444 3444567778899999999999988764   4555555544544211       235789999999988876   


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CH
Q 019340          202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HG  275 (342)
Q Consensus       202 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  275 (342)
                      +...+..|-..|..    .++.++|..+|++..+.|   +...+..|-..|... |   +.++|.+.|+.-.+.|   +.
T Consensus       104 d~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-g---~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          104 NEATFTNGARLAVA----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-G---DADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTTCCCCH
T ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-C---CHHHHHHHHHHHHhcCCCCCH
Confidence            66777777777766    679999999999988875   666777777777552 2   8999999999988764   57


Q ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          276 KAQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       276 ~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      ..+..|-..|...|+.++|..+|++.-+.+
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence            788889899999999999999999988765

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.83  E-value=0.0036  Score=59.04  Aligned_cols=146  Identities=13%  Similarity=0.007  Sum_probs=115.0

Q ss_pred             cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Q 019340          118 RKNLDKALDSFLKGAARG---STLAMVDAGLMYWEM---------DKKEAAISLYRQAAVLG---DPAGQFNLGISYLQA  182 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~---------~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~g  182 (342)
                      .|+.++|+.+|.+..+.|   +...+..|=..+...         ++.++|...|++....|   |...+..|-..|.  
T Consensus        39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~--  116 (501)
T 4g26_A           39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV--  116 (501)
T ss_dssp             SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH--
Confidence            479999999999998876   556666555555543         35899999999988774   6677777777777  


Q ss_pred             CccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCc
Q 019340          183 QPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG---YVRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       183 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~y~~g~g~~  256 (342)
                      ..++.++|+..|++..+.|   +...+..|=..|..    .++.++|.+.|.+..+.|   +...+..|-..|... |  
T Consensus       117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~----~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~-g--  189 (501)
T 4g26_A          117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR----KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT-K--  189 (501)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-T--
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC-C--
Confidence            7899999999999988876   66777776666655    668999999999998876   667777787778653 3  


Q ss_pred             ccHHHHHHHHHHHHHcC
Q 019340          257 LSHRQARKWMKRAADCG  273 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~~  273 (342)
                       +.++|...|++--+.+
T Consensus       190 -~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          190 -NADKVYKTLQRLRDLV  205 (501)
T ss_dssp             -CHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHHhC
Confidence             9999999999987753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.80  E-value=0.0001  Score=52.64  Aligned_cols=70  Identities=7%  Similarity=-0.062  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      .++..+..+|.++....+ ....++|..++++|+..  +++.+.+.||.+++..|++++|+.+|+++++.+++
T Consensus         4 ~~~~~~~~~a~al~~~~~-~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHK-QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTT-TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            467777788877743322 23578999999999876  67999999999999999999999999999998876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.79  E-value=9.3e-05  Score=63.83  Aligned_cols=98  Identities=12%  Similarity=0.051  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHc-------CCCCcCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKH-------GRGVRKNLDKALDSFLKGAARG----STLAMVDAGLMYWE-----MDKKEAAISLYRQA  163 (342)
Q Consensus       100 ~a~a~~~lg~~y~~-------g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~lg~~~~~-----~~~~~~A~~~~~~a  163 (342)
                      ++++++.+|.....       |+|.....++|...+++|++++    +..++..||.+|..     .|+.++|.++|++|
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA  230 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL  230 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence            45555555555433       1233344556666666666653    34456666666655     36666666666666


Q ss_pred             HhC--C-CHHHHHHHHHHHHcCC-ccCHHHHHHHHHHHHH
Q 019340          164 AVL--G-DPAGQFNLGISYLQAQ-PANAEEAVKLLYQASI  199 (342)
Q Consensus       164 ~~~--~-~~~a~~~Lg~~~~~g~-~~~~~~A~~~~~~a~~  199 (342)
                      ++.  + +..+.+..|..+.  . .++++++..++++++.
T Consensus       231 L~LnP~~~id~~v~YA~~l~--~~~gd~~~a~~~L~kAL~  268 (301)
T 3u64_A          231 TRYCSAHDPDHHITYADALC--IPLNNRAGFDEALDRALA  268 (301)
T ss_dssp             HHHCCTTCSHHHHHHHHHTT--TTTTCHHHHHHHHHHHHH
T ss_pred             HHhCCCCCchHHHHHHHHHH--HhcCCHHHHHHHHHHHHc
Confidence            544  2 2566666666554  4 3566666666666655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.79  E-value=8.2e-05  Score=53.15  Aligned_cols=68  Identities=9%  Similarity=-0.178  Sum_probs=39.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG  167 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~  167 (342)
                      .++..+..+|.++... +-....++|..++++|+..  +++.+.+.+|.+++..|++++|+.+|+++++.+
T Consensus         4 ~~~~~~~~~a~al~~~-~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYL-HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHT-TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3556666666655431 0012356666666666654  366666666666666666666666666666553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.65  E-value=0.00034  Score=64.75  Aligned_cols=81  Identities=10%  Similarity=-0.132  Sum_probs=49.6

Q ss_pred             cCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-------CCH---HHHHH
Q 019340          149 EMDKKEAAISLYRQAAVL-------GD---PAGQFNLGISYLQAQPANAEEAVKLLYQASIA-------GHV---RAQYQ  208 (342)
Q Consensus       149 ~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-------~~~---~a~~~  208 (342)
                      ..|++++|+..|+++++.       .+   ...+.+||.+|.  ..|++++|+.+++++++.       .+|   ..+++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~--~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI--NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            456777777777777643       23   345666777776  667777777777776541       233   34556


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      ||.+|..    .+++++|+.+|++|++
T Consensus       377 La~~~~~----~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          377 VGKLQLH----QGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh----cCCHHHHHHHHHHHHH
Confidence            6666665    4456666666666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.43  E-value=0.0033  Score=47.10  Aligned_cols=98  Identities=11%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHHHH
Q 019340          222 NLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMKAV  295 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~A~  295 (342)
                      ....+...|.+....  ...++.+++++++.... .+.+..+++..++..+..++    -+.+|.||..++..|+|++|+
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            345666777777663  46889999999996643 46678889999999888764    367899999999999999999


Q ss_pred             HHHHHHHHcCc--HHHHHHHHHHHhhc
Q 019340          296 VYLELATRAGE--TAADHVKNVILQQL  320 (342)
Q Consensus       296 ~~~~~a~~~~~--~~a~~~~~~~~~~~  320 (342)
                      .+.+..++..|  ..|..+...+...+
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999998865  77777776666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.00  E-value=0.0052  Score=48.16  Aligned_cols=129  Identities=12%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCC-------HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-----
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLRE-------AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-----  135 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----  135 (342)
                      +++.+..++..+-+..|..+...........++       +..++.+|..+..    .+++.+|...|++|++..     
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~----~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH----DKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHHHhc
Confidence            456666667777788777666655555433333       3577778888888    588999999999987641     


Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAV-LGDPAGQFNLGISYLQAQPANAEEAVKLLYQA-SIAGHVRAQYQLALCL  213 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a-~~~~~~~a~~~lg~~~  213 (342)
                      +..+...++.    ......       ... ..+.+.-|.++.||.  ..+++++|+..++.. .+...+.....||.+|
T Consensus        99 ~~s~~~~~~~----~ss~p~-------s~~~~~e~Elkykia~C~~--~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           99 TSKVRPSTGN----SASTPQ-------SQCLPSEIEVKYKLAECYT--VLKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------------------CCCCHHHHHHHHHHHHH--HTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             CCCccccccc----cCCCcc-------cccccchHHHHHHHHHHHH--HHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence            1111101110    000000       001 134466677777777  777777777777663 4456677777777666

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.92  E-value=0.12  Score=48.44  Aligned_cols=255  Identities=7%  Similarity=-0.103  Sum_probs=132.7

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----CCHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----GSTLA  139 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~~~~a  139 (342)
                      .+.+..++...|..+++..+..++.+++...+   ....+......... .+  ...+.....|+.|+..     .+...
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~iferal~~~p---s~~LW~~Y~~f~~~-~~--~~~~~i~~~fe~al~~vg~d~~s~~i   87 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY---NLDLWMLYIEYVRK-VS--QKKFKLYEVYEFTLGQFENYWDSYGL   87 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC---CHHHHHHHHHHHHH-HC------CTHHHHHHHHHHSTTCTTCHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHH-hC--chHHHHHHHHHHHHHHcCCCcccHHH
Confidence            66777778777777888888877777776543   44433332222222 11  1234556677777762     24566


Q ss_pred             HHHHHHHHhc----CCCHHHHHHHHHHHHhCC--CHHHHH----------------------------------------
Q 019340          140 MVDAGLMYWE----MDKKEAAISLYRQAAVLG--DPAGQF----------------------------------------  173 (342)
Q Consensus       140 ~~~lg~~~~~----~~~~~~A~~~~~~a~~~~--~~~a~~----------------------------------------  173 (342)
                      +......+..    .++.+.+...|++|+...  +.+-++                                        
T Consensus        88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~  167 (493)
T 2uy1_A           88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI  167 (493)
T ss_dssp             HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            6555555432    256777888888887531  111000                                        


Q ss_pred             -------HHHHHHH-cCCc---c---CHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          174 -------NLGISYL-QAQP---A---NAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       174 -------~Lg~~~~-~g~~---~---~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                             ..-.+-+ .+..   .   ........|++++.  +..+..+...+..+..    .++.++|...|++|+.. 
T Consensus       168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~----~~~~~~ar~i~erAi~~-  242 (493)
T 2uy1_A          168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG----IGQKEKAKKVVERGIEM-  242 (493)
T ss_dssp             HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH-
T ss_pred             hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC-
Confidence                   0000001 0110   0   03345667777776  4567788888877765    55788888888888765 


Q ss_pred             CHH--HHHHHHHH----------------------------------------HHcCCCCcccHHHHHHHHHHHHHcC--
Q 019340          238 YVR--AMYNTSLC----------------------------------------YSFGEGLPLSHRQARKWMKRAADCG--  273 (342)
Q Consensus       238 ~~~--a~~~lg~~----------------------------------------y~~g~g~~~~~~~A~~~~~~a~~~~--  273 (342)
                      ...  .+...+..                                        ..+    ..+.+.|...|.+| ...  
T Consensus       243 P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~  317 (493)
T 2uy1_A          243 SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGV  317 (493)
T ss_dssp             CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCC
T ss_pred             CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCC
Confidence            211  11111111                                        101    22466677777777 321  


Q ss_pred             CHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          274 HGKAQLEHGLGLFTEG-EMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       274 ~~~a~~~Lg~~~~~~~-~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                      ....+...+.+....+ +.+.|...|++++...+.........+.-....++.+.++.+..+.
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2233333344444333 5888888888887753222211111222222345566666665553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.82  E-value=0.0081  Score=47.09  Aligned_cols=115  Identities=10%  Similarity=-0.036  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHhC--CCH---------HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcC
Q 019340          119 KNLDKALDSFLKGAAR--GST---------LAMVDAGLMYWEMDKKEAAISLYRQAAVL-----GDPAGQFNLGISYLQA  182 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~---------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~~~~g  182 (342)
                      +.++.|+.....++..  +++         .+++.+|..++..+++.+|...|++|+..     .++.+...++. .-  
T Consensus        34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-~s--  110 (167)
T 3ffl_A           34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-SA--  110 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc-cC--
Confidence            6888888888886553  222         37789999999999999999999999854     22222112221 00  


Q ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Q 019340          183 QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA-AEGGYVRAMYNTSLCY  249 (342)
Q Consensus       183 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A-~~~~~~~a~~~lg~~y  249 (342)
                         .......      ...+.+..|.++.||..    .+++++|+..++.. .....+.....||.+|
T Consensus       111 ---s~p~s~~------~~~e~Elkykia~C~~~----l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          111 ---STPQSQC------LPSEIEVKYKLAECYTV----LKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------C------CCCHHHHHHHHHHHHHH----TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             ---CCccccc------ccchHHHHHHHHHHHHH----HCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence               0000000      02356888999999998    88999999999876 4457888888999887

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.72  E-value=0.049  Score=40.70  Aligned_cols=62  Identities=15%  Similarity=0.092  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhCCC----HHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEA---AISLYRQAAVLGD----PAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~---A~~~~~~a~~~~~----~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      ...+.+++|.++....+...   +|.+++..+..++    -+.+|.||..++  ..++|.+|..+++..++
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y--klg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence            44555555555555443322   5555555554432    245555555555  55555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.67  E-value=0.1  Score=48.94  Aligned_cols=170  Identities=6%  Similarity=-0.103  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccC-HHHHHHHHHHH
Q 019340          121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPAN-AEEAVKLLYQA  197 (342)
Q Consensus       121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~-~~~A~~~~~~a  197 (342)
                      .+.....|++++..  ..+..++..+..+...|+.++|...|++|+.. .......+..+... +..+ ++.....+. .
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~~~~l~~~~~-~  271 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAVYGDLKRKYS-M  271 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHHHHHHHHHHH-h
Confidence            45677899999984  57899999999999999999999999999877 33323333222220 1111 111111100 0


Q ss_pred             HH---------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019340          198 SI---------AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLPLSHRQARKWM  266 (342)
Q Consensus       198 ~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  266 (342)
                      .+         ......+...+.+...    .++.+.|...|.+| ...  ....+...+.+-..   ..++.+.|...|
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r----~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~---~~~d~~~ar~if  343 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLK----KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY---ATGSRATPYNIF  343 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH---HHCCSHHHHHHH
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHH----cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH---HCCChHHHHHHH
Confidence            00         0012445555665544    34689999999999 422  23444444443322   122789999999


Q ss_pred             HHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 019340          267 KRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELA  301 (342)
Q Consensus       267 ~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a  301 (342)
                      +.++..  +.+.-+...+......|+.+.|...|+++
T Consensus       344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999985  34555566677677889999999999997

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.66  E-value=0.016  Score=43.59  Aligned_cols=82  Identities=11%  Similarity=0.104  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHH
Q 019340          238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV  312 (342)
Q Consensus       238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  312 (342)
                      .+.+.+++++++.... ...+..+++..++.....++   -+.+|.|+..++..|+|++|..+.+..++..  +..|..+
T Consensus        39 s~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            5788899999887654 36688899999999887543   5788999999999999999999999999884  6777777


Q ss_pred             HHHHHhhc
Q 019340          313 KNVILQQL  320 (342)
Q Consensus       313 ~~~~~~~~  320 (342)
                      ...+...+
T Consensus       118 k~~Ie~ki  125 (134)
T 3o48_A          118 KSMVEDKI  125 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.35  E-value=0.048  Score=41.53  Aligned_cols=83  Identities=11%  Similarity=0.105  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHH
Q 019340          237 GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG---HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADH  311 (342)
Q Consensus       237 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  311 (342)
                      -.+++.+++++++.... ...+..+++..++.....+   .-+.+|.|+..++..|+|++|..+.+..++..  +..+..
T Consensus        37 vs~~t~F~YAw~Lv~S~-~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             SCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            36788999999886654 3678889999999988753   35788999999999999999999999999885  566777


Q ss_pred             HHHHHHhhc
Q 019340          312 VKNVILQQL  320 (342)
Q Consensus       312 ~~~~~~~~~  320 (342)
                      +...+...+
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.51  E-value=1.1  Score=44.18  Aligned_cols=148  Identities=15%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCHHHHHH-HHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          119 KNLDKALD-SFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       119 ~~~~~A~~-~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      +++++|.. ++..   ..+......+...+...|.+++|++..+      ++..-+.++   .  ..+++++|.+..+  
T Consensus       613 ~~~~~a~~~~l~~---i~~~~~~~~~~~~l~~~~~~~~a~~~~~------~~~~~f~~~---l--~~~~~~~A~~~~~--  676 (814)
T 3mkq_A          613 GEIEEAIENVLPN---VEGKDSLTKIARFLEGQEYYEEALNISP------DQDQKFELA---L--KVGQLTLARDLLT--  676 (814)
T ss_dssp             TCHHHHHHHTGGG---CCCHHHHHHHHHHHHHTTCHHHHHHHCC------CHHHHHHHH---H--HHTCHHHHHHHHT--
T ss_pred             CCHHHHHHHHHhc---CCchHHHHHHHHHHHhCCChHHheecCC------Ccchheehh---h--hcCCHHHHHHHHH--
Confidence            57777765 4310   0101222445556666777777776542      333333332   2  3457777776643  


Q ss_pred             HHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHH
Q 019340          198 SIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKA  277 (342)
Q Consensus       198 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a  277 (342)
                       ...++..|..||..+..    .++++.|+++|.++   ++......   +|.. .|   +.++.....+.+...+....
T Consensus       677 -~~~~~~~W~~la~~al~----~~~~~~A~~~y~~~---~d~~~l~~---l~~~-~~---~~~~~~~~~~~a~~~~~~~~  741 (814)
T 3mkq_A          677 -DESAEMKWRALGDASLQ----RFNFKLAIEAFTNA---HDLESLFL---LHSS-FN---NKEGLVTLAKDAETTGKFNL  741 (814)
T ss_dssp             -TCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHH---TCHHHHHH---HHHH-TT---CHHHHHHHHHHHHHTTCHHH
T ss_pred             -hhCcHhHHHHHHHHHHH----cCCHHHHHHHHHHc---cChhhhHH---HHHH-cC---CHHHHHHHHHHHHHcCchHH
Confidence             23567788888888887    66888888888875   23332222   2221 11   55555555555555555443


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHH
Q 019340          278 QLEHGLGLFTEGEMMKAVVYLEL  300 (342)
Q Consensus       278 ~~~Lg~~~~~~~~~~~A~~~~~~  300 (342)
                      .+.+   |...|++++|++.|..
T Consensus       742 A~~~---~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          742 AFNA---YWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHH---HHHHTCHHHHHHHHHH
T ss_pred             HHHH---HHHcCCHHHHHHHHHH
Confidence            3322   4446666666666543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.77  E-value=2.4  Score=42.64  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=90.5

Q ss_pred             HHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 019340           90 SWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA---RGS----TLAMVDAGLMYWEMDKKEAAISLYRQ  162 (342)
Q Consensus        90 ~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~---~~~----~~a~~~lg~~~~~~~~~~~A~~~~~~  162 (342)
                      .|+-+..+.+.-.+...||.++.      ++.++++..+.+-+.   .++    .-+.+.+|.++...++  +++.++..
T Consensus       365 ~Wl~k~~~~~k~sA~aSLGlIh~------g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~  436 (963)
T 4ady_A          365 PWLGKAQNWAKFTATASLGVIHK------GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKN  436 (963)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHTS------SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHH
T ss_pred             hhhhccchHHHHHHHHHhhhhcc------CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence            35444333223345566666663      345556666665554   222    3456667776655443  46666666


Q ss_pred             HHhCCC--------H----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCH----HHHHHHHHHHhcCCCCCCCHHHH
Q 019340          163 AAVLGD--------P----AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHV----RAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       163 a~~~~~--------~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      .+...+        +    .|...||.+|.  ..++ ++++..+...+..++.    .+.+.||.++..    .+|.+-.
T Consensus       437 ~L~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG----Tgn~~ai  509 (963)
T 4ady_A          437 IIVENSGTSGDEDVDVLLHGASLGIGLAAM--GSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG----TGKPEAI  509 (963)
T ss_dssp             HHHHHSSCCSCHHHHHHHHHHHHHHHHHST--TCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT----CCCHHHH
T ss_pred             HHcCccccccccccHHHHHHHHHHHHHHhc--CCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc----cCCHHHH
Confidence            554322        1    35556666655  3333 3555556655554432    344556666543    3344444


Q ss_pred             HHHHHHHHHCCCHH----HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH----HHHHHHHHHhhhcCCHHHHHHHH
Q 019340          227 ARWYLRAAEGGYVR----AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLGLFTEGEMMKAVVYL  298 (342)
Q Consensus       227 ~~~~~~A~~~~~~~----a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~~~~~~~A~~~~  298 (342)
                      ...+..+.+..+..    +...||.++.   |   +.+.+-...+......++    .+.+.+|..|...|+...-...+
T Consensus       510 ~~LL~~~~e~~~e~vrR~aalgLGll~~---g---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL  583 (963)
T 4ady_A          510 HDMFTYSQETQHGNITRGLAVGLALINY---G---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLL  583 (963)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHTT---T---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHhhhC---C---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            44444444433322    2233444431   1   333333333333332332    23345566666666654444455


Q ss_pred             HHHHH
Q 019340          299 ELATR  303 (342)
Q Consensus       299 ~~a~~  303 (342)
                      ..+..
T Consensus       584 ~~~~~  588 (963)
T 4ady_A          584 HVAVS  588 (963)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            55543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.30  E-value=1.3  Score=33.63  Aligned_cols=80  Identities=1%  Similarity=-0.134  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ  172 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  172 (342)
                      .....+.|+++.++.+. ..+.|..+++.+++.....+   .-+.+|.||..+.+.|++++|..+.+..++.  +|..|.
T Consensus        36 ~vs~~t~F~YAw~Lv~S-~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            45678888888887774 33566778999999888743   4577888999999999999999998888754  677666


Q ss_pred             HHHHHH
Q 019340          173 FNLGIS  178 (342)
Q Consensus       173 ~~Lg~~  178 (342)
                      .....+
T Consensus       115 ~Lk~~I  120 (144)
T 1y8m_A          115 ALKSMV  120 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.87  E-value=0.84  Score=34.21  Aligned_cols=81  Identities=2%  Similarity=-0.102  Sum_probs=62.0

Q ss_pred             cCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHH
Q 019340           97 PLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAG  171 (342)
Q Consensus        97 ~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a  171 (342)
                      ....+.+.|+++.++.+. ..+.|..+++.+++.....+   .-+.++.||..+.+.|++++|.++.+..++.  ++..|
T Consensus        36 ~~vs~qt~F~yAw~Lv~S-~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            344667888888777774 33557778999998888754   3677899999999999999999999998855  67777


Q ss_pred             HHHHHHH
Q 019340          172 QFNLGIS  178 (342)
Q Consensus       172 ~~~Lg~~  178 (342)
                      ......+
T Consensus       115 ~~Lk~~I  121 (134)
T 3o48_A          115 GALKSMV  121 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.42  E-value=0.35  Score=37.20  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=40.8

Q ss_pred             ccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          257 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      +|.++|.+.|+.++..  .-+..+...+.-..++|+..+|.+.+.+|+..++.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            5999999999999776  22455556666667799999999999999998873

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.04  E-value=2.7  Score=33.23  Aligned_cols=108  Identities=13%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISY  179 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~  179 (342)
                      |+..-|.|++-+       +|++.|.+..+.   .++..-|..||......|+++-|.++|.++-   |....   ..+|
T Consensus         7 D~~~rF~LAL~l-------g~l~~A~e~a~~---l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D~~~L---~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLALEY-------GNLDAALDEAKK---LNDSITWERLIQEALAQGNASLAEMIYQTQH---SFDKL---SFLY   70 (177)
T ss_dssp             CHHHHHHHHHHT-------TCHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---CHHHH---HHHH
T ss_pred             ChHHHHHHHHhc-------CCHHHHHHHHHH---hCCHHHHHHHHHHHHHcCChHHHHHHHHHhC---CHHHH---HHHH
Confidence            455555555432       677777776544   3667777788888878888888887777652   22222   2223


Q ss_pred             HcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLR  232 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  232 (342)
                      .  ..|+.++-.+.-+.+...++....+....   .    .+|.+++++.|.+
T Consensus        71 ~--~tg~~e~L~kla~iA~~~g~~n~af~~~l---~----lGdv~~~i~lL~~  114 (177)
T 3mkq_B           71 L--VTGDVNKLSKMQNIAQTREDFGSMLLNTF---Y----NNSTKERSSIFAE  114 (177)
T ss_dssp             H--HHTCHHHHHHHHHHHHHTTCHHHHHHHHH---H----HTCHHHHHHHHHH
T ss_pred             H--HhCCHHHHHHHHHHHHHCccHHHHHHHHH---H----cCCHHHHHHHHHH
Confidence            3  33444443333333444444433333211   1    3456666666644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.57  E-value=2.7  Score=41.25  Aligned_cols=66  Identities=17%  Similarity=0.056  Sum_probs=48.4

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       118 ~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      .+..++|++..+      ++...+.+   ....|++++|.+..   -...++..|..||..+.  ..++++.|..+|.++
T Consensus       642 ~~~~~~a~~~~~------~~~~~f~~---~l~~~~~~~A~~~~---~~~~~~~~W~~la~~al--~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          642 QEYYEEALNISP------DQDQKFEL---ALKVGQLTLARDLL---TDESAEMKWRALGDASL--QRFNFKLAIEAFTNA  707 (814)
T ss_dssp             TTCHHHHHHHCC------CHHHHHHH---HHHHTCHHHHHHHH---TTCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             CCChHHheecCC------Ccchheeh---hhhcCCHHHHHHHH---HhhCcHhHHHHHHHHHH--HcCCHHHHHHHHHHc
Confidence            356666665442      34333433   35679999998873   34588999999999999  889999999999976

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.52  E-value=9.8  Score=38.35  Aligned_cols=213  Identities=13%  Similarity=0.116  Sum_probs=114.9

Q ss_pred             CCChhHHhhHHHHHHHHHHh-Cc--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC--------H----HHH
Q 019340           76 FTLPQLRAASLVCKSWNDAL-RP--LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--------T----LAM  140 (342)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~-~~--~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~----~a~  140 (342)
                      ...++..++......++... ..  .-...+++.||.++..   + +  .+++.++...+...+        .    .+.
T Consensus       385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag---~-~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa  458 (963)
T 4ady_A          385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG---F-G--RDTTDYLKNIIVENSGTSGDEDVDVLLHGAS  458 (963)
T ss_dssp             HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT---T-T--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC---C-c--HHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence            45556555654444443311 01  1135688889988854   1 2  357887777765433        2    356


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHH----HHHHHHHH
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVLGDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVR----AQYQLALC  212 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~----a~~~lg~~  212 (342)
                      +.||.+|.-.++ ++++..+...+..++.    .+.+.||.++.  ..++.+.....+..+.+..+..    +...||.+
T Consensus       459 LGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~v--GTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll  535 (963)
T 4ady_A          459 LGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCML--GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI  535 (963)
T ss_dssp             HHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc--ccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            789998875554 5777888888776553    45667888887  6667655555555555543333    33445555


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCH----HHHHHHHHH
Q 019340          213 LHRGRGVDFNLQEAARWYLRAAEGGYVRA----MYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG----KAQLEHGLG  284 (342)
Q Consensus       213 ~~~g~~~~~~~~~A~~~~~~A~~~~~~~a----~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~Lg~~  284 (342)
                      +.      ++.+.+....+......++..    .+.+|..| .|.|   |...-...++.+....+.    .|...||.+
T Consensus       536 ~~------g~~e~~~~li~~L~~~~dp~vRygaa~alglAy-aGTG---n~~aIq~LL~~~~~d~~d~VRraAViaLGlI  605 (963)
T 4ady_A          536 NY------GRQELADDLITKMLASDESLLRYGGAFTIALAY-AGTG---NNSAVKRLLHVAVSDSNDDVRRAAVIALGFV  605 (963)
T ss_dssp             TT------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT-TTSC---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             hC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cCCC---CHHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence            43      234444444444444455443    34456666 5665   654444577776654321    244555554


Q ss_pred             hhhcCCHHHHHHHHHHHHHcCcHHH
Q 019340          285 LFTEGEMMKAVVYLELATRAGETAA  309 (342)
Q Consensus       285 ~~~~~~~~~A~~~~~~a~~~~~~~a  309 (342)
                      ...  +.+.+.+.+....+.+++..
T Consensus       606 ~~g--~~e~v~rlv~~L~~~~d~~V  628 (963)
T 4ady_A          606 LLR--DYTTVPRIVQLLSKSHNAHV  628 (963)
T ss_dssp             TSS--SCSSHHHHTTTGGGCSCHHH
T ss_pred             ccC--CHHHHHHHHHHHHhcCCHHH
Confidence            333  33334444443333344433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.38  E-value=0.64  Score=43.43  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             HHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc--CcHHHHHHHHHHH
Q 019340          242 MYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA--GETAADHVKNVIL  317 (342)
Q Consensus       242 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~~~~~~  317 (342)
                      ...||.+..+..    ....|..||.+|+..  ++...++.||.+....|+.-+|+.||.+++..  ..+.|..++..+.
T Consensus       155 l~~LGDL~RY~~----~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          155 LVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHH----HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            344555544332    445555555555543  33455555555555555555555555555432  2344444444333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.66  E-value=4.1  Score=32.16  Aligned_cols=54  Identities=19%  Similarity=0.071  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      |++..+.++   .+.|+++.|.+..+..   ++..-|..||....  ..++++.|..+|+++
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL--~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL---NDSITWERLIQEAL--AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHH--HTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHH--HcCChHHHHHHHHHh
Confidence            344444433   2456666666654332   56666677777766  666777777666654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=91.39  E-value=4.1  Score=32.01  Aligned_cols=87  Identities=15%  Similarity=0.007  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------------------
Q 019340          105 LRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL------------------  166 (342)
Q Consensus       105 ~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------  166 (342)
                      ..++.+..-    .+.+..++-++..   .+-..+.+--..||...+|+.+|+..+++.++-                  
T Consensus        37 lL~~I~Lyy----ngEY~R~Lf~L~~---lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd  109 (242)
T 3kae_A           37 MLMSIVLYL----NGEYTRALFHLHK---LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD  109 (242)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHT---CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred             hhhhhhhhh----cchHhHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence            334544443    3566666655433   566667777777777778888888887777621                  


Q ss_pred             -CCHHHHHH-HHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          167 -GDPAGQFN-LGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       167 -~~~~a~~~-Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                       ++.+-.++ +|.++.  ..++.++|+.+|.++-..
T Consensus       110 ~~DkEfFy~l~a~llt--q~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          110 PGDEEFFESLLGDLCT--LSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH--HhcCHHHhhhHhhhhcCC
Confidence             22333322 445544  555666666666655443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.39  E-value=0.65  Score=43.41  Aligned_cols=74  Identities=19%  Similarity=0.131  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      .+..||.+......++.|..||.+|+..  ++..++..||.+..  ..++.-.|+-+|.|++-.  ..+.|..||...+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~--~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS--SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH--HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh--cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            4467888888888888999999988755  67788888998888  667888888888887653  47788888887775

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.92  E-value=4.6  Score=35.12  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             HHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh----CCCHHHHH
Q 019340           66 FDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAA----RGSTLAMV  141 (342)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~----~~~~~a~~  141 (342)
                      ...+.+....+..|++-+|.+.++.....                |..    .+++++|++++...+.    .+...+-.
T Consensus        14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~   73 (312)
T 2wpv_A           14 AKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVR----SKSYEHAIELISQGALSFLKAKQGGSGT   73 (312)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHH----hcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence            45666777777888888887655444322                233    3677777777766554    24444444


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc-C-Cc----cCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ-A-QP----ANAEEAVKLLYQAS--IAGHVRAQYQLALCL  213 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~-g-~~----~~~~~A~~~~~~a~--~~~~~~a~~~lg~~~  213 (342)
                      .|+..+.         +.|+++-..-+.+..-.|..++.. . ..    .=..+|++|-.+.-  ..|+|+-+..+|..|
T Consensus        74 DLa~llv---------ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~  144 (312)
T 2wpv_A           74 DLIFYLL---------EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL  144 (312)
T ss_dssp             HHHHHHH---------HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence            4444432         223332222334444445555432 0 00    11234444444331  236777777888777


Q ss_pred             hcCCCCCCCHHHHHHHHH
Q 019340          214 HRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       214 ~~g~~~~~~~~~A~~~~~  231 (342)
                      ..    .+++.+|..+|-
T Consensus       145 ~~----e~~~~~A~~H~i  158 (312)
T 2wpv_A          145 LE----GDFVYEAERYFM  158 (312)
T ss_dssp             HH----TTCHHHHHHHHH
T ss_pred             hh----cCCHHHHHHHHH
Confidence            76    557777777664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.45  E-value=3.3  Score=31.79  Aligned_cols=31  Identities=16%  Similarity=0.013  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHhcCCCH------HHHHHHHHHHHh
Q 019340          135 GSTLAMVDAGLMYWEMDKK------EAAISLYRQAAV  165 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~------~~A~~~~~~a~~  165 (342)
                      ++++.|..........|++      ++-+..|++|+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia   47 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE   47 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence            4555555555554444554      555555555543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.20  E-value=9.5  Score=34.32  Aligned_cols=87  Identities=18%  Similarity=0.060  Sum_probs=41.3

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-----CC
Q 019340          208 QLALCLHRGRGVDFNLQEAARWYLRAAEG----GY----VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-----GH  274 (342)
Q Consensus       208 ~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~  274 (342)
                      .||.+|..    .+++.+|...+.+..+.    ++    .+.+..-..+|..    .+|..++...|.+|...     .+
T Consensus       104 kL~~l~~~----~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~----~~n~~k~k~~l~~a~~~~~ai~~~  175 (394)
T 3txn_A          104 RLIALYFD----TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA----LSNLPKARAALTSARTTANAIYCP  175 (394)
T ss_dssp             HHHHHHHH----TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHH----hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhhccCCCC
Confidence            45555554    44555555555554431    11    1223333334432    22666666666555321     22


Q ss_pred             HHH----HHHHHHHhh-hcCCHHHHHHHHHHHH
Q 019340          275 GKA----QLEHGLGLF-TEGEMMKAVVYLELAT  302 (342)
Q Consensus       275 ~~a----~~~Lg~~~~-~~~~~~~A~~~~~~a~  302 (342)
                      +..    ...-|.++. ..++|.+|..+|-.+.
T Consensus       176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            211    234555555 5666666666666654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.33  E-value=3.9  Score=30.90  Aligned_cols=88  Identities=16%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHH
Q 019340          222 NLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLE  299 (342)
Q Consensus       222 ~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~  299 (342)
                      |...-+.+|-+.   +-..-++.++.-+....|   ..++--+.+...+...  +++.++.+|.+|...|+..+|-+.+.
T Consensus        76 NlKrVi~C~~~~---n~~se~vd~ALd~lv~~~---KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           76 NLKSVVECGVIN---NTLNEHVNKALDILVIQG---KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             CTHHHHHHHHHT---TCCCHHHHHHHHHHHHTT---CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHh---cchHHHHHHHHHHHHHhc---cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            455555554332   111223444444433223   3444444444433333  38889999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHH
Q 019340          300 LATRAGETAADHVKNV  315 (342)
Q Consensus       300 ~a~~~~~~~a~~~~~~  315 (342)
                      +|++.|-.+|+.+...
T Consensus       150 ~AC~kG~kEAC~~in~  165 (172)
T 1wy6_A          150 EACKKGEKEACNAVNT  165 (172)
T ss_dssp             HHHHTTCHHHHHHHHT
T ss_pred             HHHHhhhHHHHHHHHh
Confidence            9999999999987653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=84.70  E-value=7.6  Score=29.35  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=33.7

Q ss_pred             cCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHH
Q 019340          149 EMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLA  210 (342)
Q Consensus       149 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  210 (342)
                      ..|+.++=.+.+...+..  -+|+-++.+|.+|.  ..++..+|-+.+.+|.+.|..+|+.++-
T Consensus       103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~--Klg~~r~a~eLl~~AC~kG~kEAC~~in  164 (172)
T 1wy6_A          103 IQGKRDKLEEIGREILKNNEVSASILVAIANALR--RVGDERDATTLLIEACKKGEKEACNAVN  164 (172)
T ss_dssp             HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHH--HhcchhhHHHHHHHHHHhhhHHHHHHHH
Confidence            345555555555543322  23666666666666  5666666666666666666666665543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.49  E-value=17  Score=32.73  Aligned_cols=90  Identities=18%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-----CCHHHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL----GDP----AGQFNLGISYLQAQPANAEEAVKLLYQASIA-----GHVRAQ  206 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~----~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~  206 (342)
                      ...||.+|...|++.+|.+.+.+..+.    ++.    +.+..-..+|.  ..+|..++..+|.++...     .+|..+
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~--~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH--ALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            347888888888888888888776642    332    33334445555  677888888888876431     344433


Q ss_pred             H----HHHHHHh-cCCCCCCCHHHHHHHHHHHHH
Q 019340          207 Y----QLALCLH-RGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       207 ~----~lg~~~~-~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      .    .-|.++. .    .+|+.+|..+|-.+.+
T Consensus       180 a~i~~~~Gi~~l~~----~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          180 GALDLQSGILHAAD----ERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHT----TSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHh----ccCHHHHHHHHHHHHh
Confidence            2    3355555 5    6788888888888753

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.38  E-value=20  Score=31.10  Aligned_cols=132  Identities=15%  Similarity=0.043  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhCCC-HHHH---HHHHHHHhcCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHcCCccCHHHHHH
Q 019340          121 LDKALDSFLKGAARGS-TLAM---VDAGLMYWEMDKKEAAISLYRQAA----VLGDPAGQFNLGISYLQAQPANAEEAVK  192 (342)
Q Consensus       121 ~~~A~~~~~~A~~~~~-~~a~---~~lg~~~~~~~~~~~A~~~~~~a~----~~~~~~a~~~Lg~~~~~g~~~~~~~A~~  192 (342)
                      .++-+.-++..++.|+ -+|+   ..+..-|...+++++|+..+...+    +.+....-..|+..+.           +
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llv-----------e   81 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLL-----------E   81 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------H
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHH-----------H
Confidence            3344444555555442 2332   346667777899999999987765    3466655555555544           2


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHH
Q 019340          193 LLYQASIAGHVRAQYQLALCLHR-GRGVD---FNLQEAARWYLRAA--EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWM  266 (342)
Q Consensus       193 ~~~~a~~~~~~~a~~~lg~~~~~-g~~~~---~~~~~A~~~~~~A~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  266 (342)
                      .|.++-..-+.+....|..++.. ....+   +=..+|+.|-.+.-  ..|++.-+..+|..|..    ++++.+|..+|
T Consensus        82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~H~  157 (312)
T 2wpv_A           82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE----GDFVYEAERYF  157 (312)
T ss_dssp             HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH----TTCHHHHHHHH
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHH
Confidence            33332222244455556666543 11000   11345555554442  24899999999999976    33888998888


Q ss_pred             H
Q 019340          267 K  267 (342)
Q Consensus       267 ~  267 (342)
                      -
T Consensus       158 i  158 (312)
T 2wpv_A          158 M  158 (312)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.55  E-value=14  Score=28.95  Aligned_cols=108  Identities=13%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAA-RGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      +|++.++  |..|.- ...++....++..+.-.|++..++..+   ...+...+.+.-..||.  ..+|+.+|+.++++.
T Consensus        16 ~dYdt~~--fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L---~~lNT~Ts~YYk~LCy~--klKdYkkA~~~le~i   88 (242)
T 3kae_A           16 RDYETAI--FLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHL---HKLNTCTSKYYESLCYK--KKKDYKKAIKSLESI   88 (242)
T ss_dssp             TCHHHHH--HHHHHHC----CTHHHHHHHHHHTTCHHHHHHHH---HTCCBHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             ccccHHH--HHHHHHccCChHHHhhhhhhhhhcchHhHHHHHH---HhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            5777765  333333 234455667788888899999988764   35678889999999999  889999999999998


Q ss_pred             HHc-------------------CCHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC
Q 019340          198 SIA-------------------GHVRAQ-YQLALCLHRGRGVDFNLQEAARWYLRAAEGG  237 (342)
Q Consensus       198 ~~~-------------------~~~~a~-~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~  237 (342)
                      ++.                   ++.+-. ..+|.++.+    .++.++|+.+|.+.....
T Consensus        89 l~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq----~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A           89 LEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL----SGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             HTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HhcccccCcccccccceeeeccchHHHHHHHHHHHHHH----hcCHHHhhhHhhhhcCCc
Confidence            841                   233333 456778777    678999999998886654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.04  E-value=28  Score=33.38  Aligned_cols=121  Identities=13%  Similarity=-0.041  Sum_probs=73.0

Q ss_pred             CChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhcCCCHHH
Q 019340           77 TLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-GSTLAMVDAGLMYWEMDKKEA  155 (342)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~lg~~~~~~~~~~~  155 (342)
                      ...+...|...+....+.. .+.........+.+-.. ....+...++..++.+.... .+....-..+......+|++.
T Consensus       226 ar~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          226 ARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWR-LMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT-SCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HhcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHH-HHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHH
Confidence            3345555655554444332 33333333333333222 22233366777788776554 333333333334445699999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG  201 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~  201 (342)
                      |..+|++....  ..+.+.|.+|.++.  ..|+.++|..+|++++...
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~--~~g~~~~a~~~~~~~a~~~  349 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLL--ERGREAEAKEILHQLMQQR  349 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHH--HcCCHHHHHHHHHHHhcCC
Confidence            99999876543  56888999999988  7889999999999987643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.37  E-value=12  Score=33.52  Aligned_cols=55  Identities=9%  Similarity=-0.039  Sum_probs=32.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          141 VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      ..++..+...|++.+++..+++++..  -+-.++..|-.++.  ..|+..+|+..|++.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~--~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY--LSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--TTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence            34455555566666666666665533  34556666666666  566666666666654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.37  E-value=3.4  Score=37.75  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CCHHHHH-
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD-PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GHVRAQY-  207 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~-  207 (342)
                      .++..+|..|...||+++|.+.|.++.+.    ++ .+.+..+-.++.  ..+|+..+..++.++-..    +++.... 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l--~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF--FYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            45666777777777777777777776543    22 345555555555  556777777777765331    2333222 


Q ss_pred             ---HHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          208 ---QLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       208 ---~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                         .-|.++..    .+++.+|..+|..+..
T Consensus       210 lk~~~gl~~l~----~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          210 YKTYYGIHCLA----VRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHGGGG----TSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----hChHHHHHHHHHHHhc
Confidence               22333333    5677777777766544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.36  E-value=2.7  Score=38.36  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G-STLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GDPAG  171 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~-~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a  171 (342)
                      ..++..||..|..    .||+++|++.|.+..+.    + -.+.++.+-+++...+|+..+..++.++-..    +++.-
T Consensus       131 ~~~~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~  206 (429)
T 4b4t_R          131 AQAWINLGEYYAQ----IGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER  206 (429)
T ss_dssp             SSCCHHHHHHHHH----HCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence            4578889999998    68999999999998763    2 4577788888899999999999999998532    44443


Q ss_pred             ----HHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          172 ----QFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       172 ----~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                          ...-|.++.  ..+++.+|..+|..+..
T Consensus       207 ~~~lk~~~gl~~l--~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          207 RNRYKTYYGIHCL--AVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHHHHGGG--GTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HhChHHHHHHHHHHHhc
Confidence                233455555  68899999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	9e-12
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	4e-09
d1klxa_	133	a.118.18.1 (A:) Cysteine rich protein B (HcpB) {He	4e-04
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	1e-10
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	6e-08
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	2e-07
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	6e-07
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	2e-05
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	7e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 59.8 bits (143), Expect = 9e-12
 Identities = 20/131 (15%), Positives = 40/131 (30%)

Query: 114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQF 173
           G  V+K+L KA+  ++K          +          +K             G+     
Sbjct: 2   GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 61

Query: 174 NLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233
                  +    +  +A +   +A           L    + G+GV  N ++A + + +A
Sbjct: 62  GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121

Query: 234 AEGGYVRAMYN 244
              G   A   
Sbjct: 122 CRLGSEDACGI 132

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 52.1 bits (123), Expect = 4e-09
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 154 EAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCL 213
           + AI  Y +A  L +  G  +L  +       N ++  + L +A           L    
Sbjct: 10  KKAIQYYVKACELNEMFGCLSLVSNSQI----NKQKLFQYLSKACELNSGNGCRFLGDFY 65

Query: 214 HRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG 273
             G+ V  +L++AA++Y +A                  G+G+  + +QA K  ++A   G
Sbjct: 66  ENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125

Query: 274 HGKAQ 278
              A 
Sbjct: 126 SEDAC 130

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Length = 133

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 10/82 (12%), Positives = 25/82 (30%)

Query: 216 GRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHG 275
           G  V  +L++A ++Y++A E   +    +        +     +      +     C   
Sbjct: 2   GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 61

Query: 276 KAQLEHGLGLFTEGEMMKAVVY 297
               E+G  +  +         
Sbjct: 62  GDFYENGKYVKKDLRKAAQYYS 83

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 59.1 bits (141), Expect = 1e-10
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 168 DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAA 227
           DP     LG    + +  +  +A K   +A         + L +  ++G+GV+ NL++AA
Sbjct: 1   DPKELVGLGAKSYKEK--DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58

Query: 228 RWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGL 283
            +Y +A +  Y    +     Y  G+G+  +  +A ++  +A D  + +     G 
Sbjct: 59  SFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGG 114

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 2/146 (1%)

Query: 139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQ 196
            +V  G   ++      A   + +A  L + +G FNLG+ Y Q Q    N ++A     +
Sbjct: 4   ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 63

Query: 197 ASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLP 256
           A    +    + L    + G+GV  N  +A ++Y +A +  Y     +    Y  G+ + 
Sbjct: 64  ACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 123

Query: 257 LSHRQARKWMKRAADCGHGKAQLEHG 282
              ++A ++  +A D   G      G
Sbjct: 124 RDFKKAVEYFTKACDLNDGDGCTILG 149

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 11/89 (12%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQAR 263
           +    L    ++ +    +  +A +++ +A +       +N  + Y  G+G+  + ++A 
Sbjct: 3   KELVGLGAKSYKEK----DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAA 58

Query: 264 KWMKRAADCGHGKAQLEHGLGLFTEGEMM 292
            +  +A D  +       G   ++   + 
Sbjct: 59  SFYAKACDLNYSNGCHLLGNLYYSGQGVS 87

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 47.6 bits (111), Expect = 6e-07
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYN 244
           +    + L    + G GV  N ++A   + +  + G   A   
Sbjct: 213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 255

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 27/77 (35%)

Query: 202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ 261
                +      H G G   N +EA   Y +A E       +N       GEG+  + +Q
Sbjct: 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ 236

Query: 262 ARKWMKRAADCGHGKAQ 278
           A +  K+    G   A 
Sbjct: 237 AIENFKKGCKLGAKGAC 253

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 6/171 (3%)

Query: 118 RKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD----KKEAAISLYRQAAVLGDPAGQF 173
            K+  +A   F K           + G++Y++        + A S Y +A  L    G  
Sbjct: 15  EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 74

Query: 174 NLGI--SYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYL 231
            LG      Q    N  +A++   +A    +      L    H G+ V  + ++A  ++ 
Sbjct: 75  LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 134

Query: 232 RAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHG 282
           +A +             Y  G G P   ++A     +A D          G
Sbjct: 135 KACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAG 185

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 61 FASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALR 96
          + SLP ++L  I +   LP+L   S VCK W     
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 12/138 (8%)

Query: 119 KNLDKALDSFLKGAARGSTLAMV--DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN 174
           +  D+A+ ++L+  +     A+V  +   +Y+E    + AI  YR+A  L    P    N
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 175 LGISYL-QAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRA 233
           L  +   +   A AE+      +              +   +G     N++EA R Y +A
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG-----NIEEAVRLYRKA 331

Query: 234 AE--GGYVRAMYNTSLCY 249
            E    +  A  N +   
Sbjct: 332 LEVFPEFAAAHSNLASVL 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.97
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.89
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.71
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.42
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.37
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.27
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.22
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.17
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.1
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.1
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.95
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.93
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.89
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.88
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.75
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.65
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.63
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.13
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.79
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.27
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.71
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.45
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	83.61
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.9
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	80.98

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.97  E-value=3e-29  Score=217.43  Aligned_cols=250  Identities=20%  Similarity=0.238  Sum_probs=229.0

Q ss_pred             cHHHHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 019340           65 PFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAG  144 (342)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg  144 (342)
                      |..........+..+|+.+|.    .|++++++.+++.+++.||.+|..|.|+++|+.+|..+++.++..+++.++..+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~----~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAK----KYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            455566666778889999996    5666677788999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc--CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340          145 LMYWEM----DKKEAAISLYRQAAVLGDPAGQFNLGISYLQ--AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG  218 (342)
Q Consensus       145 ~~~~~~----~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~--g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~  218 (342)
                      .++..+    .+.++|..+|+++++.+.+.+...||..+..  ....+..+++.++.+....+++.++++||.+|..+.+
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            998764    6899999999999999999999999999885  3467899999999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHH
Q 019340          219 VDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKA  294 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A  294 (342)
                      ...+...+..+++++++.+++.++++||.+|..|.|+++|+++|+.||+++++.+++.++++||.+|..    .+|+++|
T Consensus       158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A  237 (265)
T d1ouva_         158 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQA  237 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             cccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999986    5599999


Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHh
Q 019340          295 VVYLELATRAGETAADHVKNVILQ  318 (342)
Q Consensus       295 ~~~~~~a~~~~~~~a~~~~~~~~~  318 (342)
                      +.||++|++.|+..|...+..+..
T Consensus       238 ~~~~~kAa~~g~~~A~~~l~~l~~  261 (265)
T d1ouva_         238 IENFKKGCKLGAKGACDILKQLKI  261 (265)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTCCC
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHH
Confidence            999999999999999987765543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.95  E-value=4.9e-25  Score=190.54  Aligned_cols=231  Identities=16%  Similarity=0.175  Sum_probs=212.6

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE----MDKKEAAISLYRQAAVLGDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~L  175 (342)
                      ||.+++.||..+..    .+|+++|+++|++|++.|++.+++.||.+|..    ..|+.+|+.++++++..+++.++..|
T Consensus         1 ~p~~~~~lG~~~~~----~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYK----EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence            57899999999998    68999999999999999999999999999997    47999999999999999999999999


Q ss_pred             HHHHHcC--CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Q 019340          176 GISYLQA--QPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE  253 (342)
Q Consensus       176 g~~~~~g--~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~  253 (342)
                      |.++..|  ...+.+.|+.+|+++++.+...++..||..+..+.....+...+..++.+....++..++++||.+|..+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~  156 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR  156 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence            9998863  47789999999999999999999999999999888888999999999999999999999999999999998


Q ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcC--hhcHHH
Q 019340          254 GLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHVKNVILQQLS--ATSRDR  327 (342)
Q Consensus       254 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~--~~~~~~  327 (342)
                      +...+...+..|++.+++.+++.++++||.+|..    .+++++|+.||+++++.|++.++++++.+.....  ..+.++
T Consensus       157 ~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~  236 (265)
T d1ouva_         157 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ  236 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred             CcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHH
Confidence            8999999999999999999999999999999987    6799999999999999999999999999987653  234556


Q ss_pred             HHHHHHh
Q 019340          328 AMLVVDS  334 (342)
Q Consensus       328 a~~~~~~  334 (342)
                      |...+++
T Consensus       237 A~~~~~k  243 (265)
T d1ouva_         237 AIENFKK  243 (265)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.7e-21  Score=171.29  Aligned_cols=254  Identities=17%  Similarity=0.058  Sum_probs=157.3

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWE  149 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~  149 (342)
                      +...|..|++.+|...+...++..++  ++.+++.+|.+|..    .+++++|+.+|+++++.  +++.+++.+|.+|..
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~   79 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE   79 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh
Confidence            33445667777777777777666543  67777777777777    46777777777777764  466777777777777


Q ss_pred             CCCHHHHHHHHHHHHhC---------------------------------------------------------------
Q 019340          150 MDKKEAAISLYRQAAVL---------------------------------------------------------------  166 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~---------------------------------------------------------------  166 (342)
                      .|++++|+..+.++.+.                                                               
T Consensus        80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence            77777777666554421                                                               


Q ss_pred             -------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH----------------------------------c--CCH
Q 019340          167 -------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI----------------------------------A--GHV  203 (342)
Q Consensus       167 -------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~----------------------------------~--~~~  203 (342)
                             +++.++..+|.++.  ..+++++|+.+++++++                                  .  ..+
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  237 (388)
T d1w3ba_         160 KAIETQPNFAVAWSNLGCVFN--AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HhhccCcchhHHHHhhccccc--ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH
Confidence                   12334444444444  44455555555554443                                  2  244


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHH
Q 019340          204 RAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQL  279 (342)
Q Consensus       204 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  279 (342)
                      ..++.+|.++..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++.+|+.+|+.+...  .+...+.
T Consensus       238 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~  309 (388)
T d1w3ba_         238 VVHGNLACVYYE----QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhh
Confidence            445555555554    45666666666666654  456666666666644    22666666666666654  4456667


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          280 EHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       280 ~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      .+|.++...|++++|+.+|+++++..+.++.....+...+...++.++|+..+++..+..|.
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            77777777777777777777777766544444444444445557777777777777776664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-20  Score=166.45  Aligned_cols=189  Identities=19%  Similarity=0.128  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 019340          122 DKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQA  197 (342)
Q Consensus       122 ~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a  197 (342)
                      ++|+.+++++++.  +++.++..+|.++...|++++|+..|+++...  .++..++.+|.++.  ..+++++|+.+|+++
T Consensus       186 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY--EQGLIDLAIDTYRRA  263 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence            3344444444432  34555566666666666666666666665543  55677777777777  788999999999999


Q ss_pred             HHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc-
Q 019340          198 SIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC-  272 (342)
Q Consensus       198 ~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  272 (342)
                      ++.  +++.+++.+|.++..    .+++.+|+.+|+++...  .+...+..+|.+|.. .|   ++++|+.+|+++++. 
T Consensus       264 l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~---~~~~A~~~~~~al~~~  335 (388)
T d1w3ba_         264 IELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QG---NIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHTTSC
T ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CC---CHHHHHHHHHHHHHhC
Confidence            885  689999999999987    77999999999999876  578899999999965 33   999999999999876 


Q ss_pred             -CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhc
Q 019340          273 -GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE--TAADHVKNVILQQL  320 (342)
Q Consensus       273 -~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~  320 (342)
                       +++.+++++|.+|...|++++|+.+|++|+++.|  +++..+++.++..+
T Consensus       336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence             5689999999999999999999999999999864  66677777666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.88  E-value=3.8e-22  Score=154.15  Aligned_cols=131  Identities=20%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             CCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHH
Q 019340          114 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKL  193 (342)
Q Consensus       114 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~  193 (342)
                      |.||++|+++|+.||++|++.+++.+++.||..                                    ...++++|+.+
T Consensus         2 G~gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~------------------------------------~~~~~~~a~~~   45 (133)
T d1klxa_           2 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSN------------------------------------SQINKQKLFQY   45 (133)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTC------------------------------------TTSCHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHCCChhhhhhhccc------------------------------------cccCHHHHHHH
Confidence            456666666666666666666666666655421                                    33455666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          194 LYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       194 ~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      |+++++.+++.+++.||.+|..|.++++|+.+|+.||++|++.+++.++++||.+|..|.|+++|..+|+.||++|++.|
T Consensus        46 ~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          46 LSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHH
Q 019340          274 HGKAQLE  280 (342)
Q Consensus       274 ~~~a~~~  280 (342)
                      +..+++.
T Consensus       126 ~~~A~~~  132 (133)
T d1klxa_         126 SEDACGI  132 (133)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHh
Confidence            6666553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.88  E-value=5.8e-22  Score=153.08  Aligned_cols=125  Identities=17%  Similarity=0.127  Sum_probs=117.3

Q ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          182 AQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       182 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      |+.+|+++|+.||+++++.+++.++++||..      ...|.++|+.+|+++++.+++.+++.||.+|..|.++++|+.+
T Consensus         4 gv~kd~~~A~~~~~kaa~~g~~~a~~~l~~~------~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           4 TVKKDLKKAIQYYVKACELNEMFGCLSLVSN------SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCTTHHHHHHTC------TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CcccCHHHHHHHHHHHHHCCChhhhhhhccc------cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHH
Confidence            4678999999999999999999999999843      3679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCcHHHHHH
Q 019340          262 ARKWMKRAADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGETAADHV  312 (342)
Q Consensus       262 A~~~~~~a~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~~~a~~~  312 (342)
                      |+.||+++++.+++.++++||.+|..    ..|+++|+.||++|++.|+++|+..
T Consensus        78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~~  132 (133)
T d1klxa_          78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI  132 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHHh
Confidence            99999999999999999999999987    5699999999999999999999865

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-19  Score=159.15  Aligned_cols=224  Identities=13%  Similarity=0.028  Sum_probs=186.9

Q ss_pred             HHHHHHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340           68 VLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGL  145 (342)
Q Consensus        68 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~  145 (342)
                      .+.++...+..|++.+|...+...++.-+.  ++.+++.+|.+|..    .+++++|+..|.++++.  .+...++.+|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~   95 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAE----NEQELLAISALRRCLELKPDNQTALMALAV   95 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHhhhccccccccccccccc
Confidence            467888889999999999999888877554  89999999999999    58999999999999986  58999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHc----CCccCHHHHHHHHHHHHHcC----CHHHH
Q 019340          146 MYWEMDKKEAAISLYRQAAVLGDP-----------AGQFNLGISYLQ----AQPANAEEAVKLLYQASIAG----HVRAQ  206 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~~~~~~-----------~a~~~Lg~~~~~----g~~~~~~~A~~~~~~a~~~~----~~~a~  206 (342)
                      +|...|++++|+..|++++.....           .....++.....    ...+.+.+|+..|.+++...    ++.++
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~  175 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  175 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             cccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence            999999999999999999865321           111111111110    02467889999999988743    67889


Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          207 YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHG  282 (342)
Q Consensus       207 ~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg  282 (342)
                      ..+|.++..    .+++++|+.+|++++..  .++.+++++|.+|.. .   +++++|+.+|+++++.  +++.++++||
T Consensus       176 ~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~---g~~~~A~~~~~~al~~~p~~~~a~~~lg  247 (323)
T d1fcha_         176 CGLGVLFNL----SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-G---NQSEEAVAAYRRALELQPGYIRSRYNLG  247 (323)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHH----HHHHhhhhcccccccccccccccchhhhhhcccc-c---ccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence            999999987    77999999999999875  689999999999965 3   3999999999999885  6799999999


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHcC
Q 019340          283 LGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       283 ~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                      .+|...|++++|+.+|++|+++.
T Consensus       248 ~~~~~~g~~~~A~~~~~~al~l~  270 (323)
T d1fcha_         248 ISCINLGAHREAVEHFLEALNMQ  270 (323)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.5e-19  Score=154.41  Aligned_cols=229  Identities=14%  Similarity=0.003  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      ...+..|..+..    .|++++|+..|+++++.+  ++.+++.+|.+|...|++++|+.+|.++++.  .++.+++.+|.
T Consensus        20 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   95 (323)
T d1fcha_          20 PQPFEEGLRRLQ----EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV   95 (323)
T ss_dssp             SSHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccc
Confidence            335788999988    589999999999999974  8999999999999999999999999999865  78999999999


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHC----CCHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASIAGHV-----------RAQYQLALCLHRGR--GVDFNLQEAARWYLRAAEG----GYVR  240 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~~~~-----------~a~~~lg~~~~~g~--~~~~~~~~A~~~~~~A~~~----~~~~  240 (342)
                      +|.  ..+++++|+..|++++.....           .....++.......  .....+.+|+..|.+++..    .++.
T Consensus        96 ~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~  173 (323)
T d1fcha_          96 SFT--NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  173 (323)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             ccc--ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccc
Confidence            999  889999999999999874311           11111211111000  0024678899999999875    3678


Q ss_pred             HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Q 019340          241 AMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQ  318 (342)
Q Consensus       241 a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~  318 (342)
                      ++..+|.++...    +++++|+.+|++++..  +++.+++.+|.+|...|++++|+.+|+++++..+.++.....++..
T Consensus       174 ~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  249 (323)
T d1fcha_         174 VQCGLGVLFNLS----GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS  249 (323)
T ss_dssp             HHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhhHHHHHHH----HHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            899999999652    3999999999999876  6789999999999999999999999999999865444444444444


Q ss_pred             hcChhcHHHHHHHHHhhhcCCC
Q 019340          319 QLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       319 ~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      +...++.++|+..+++..+..|
T Consensus       250 ~~~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         250 CINLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC
Confidence            4556889999998888765433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.2e-17  Score=140.80  Aligned_cols=199  Identities=13%  Similarity=0.008  Sum_probs=149.0

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHH
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNL  175 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L  175 (342)
                      .+.+++.+|.+|..    .|++++|+..|++|+..  +++.+++++|.+|...|++++|+..|+++++.  +++.+++++
T Consensus        36 ~a~~~~~~G~~y~~----~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          36 RAQLLYERGVLYDS----LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            56799999999999    58999999999999986  59999999999999999999999999999865  779999999


Q ss_pred             HHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Q 019340          176 GISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGE  253 (342)
Q Consensus       176 g~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~  253 (342)
                      |.+|.  ..+++++|+.+|+++++.  .+..+...++.++..    ......+..................+...+....
T Consensus       112 g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (259)
T d1xnfa_         112 GIALY--YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK----LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI  185 (259)
T ss_dssp             HHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSS
T ss_pred             HHHHH--HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH----hhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHH
Confidence            99999  889999999999999885  467777777777654    2223333333333333332222233333332212


Q ss_pred             CCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHH
Q 019340          254 GLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETA  308 (342)
Q Consensus       254 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~  308 (342)
                      ........+...+..+...  ....++++||.+|...|++++|+.+|++|+..+|.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            1122344444444444332  446788999999999999999999999999987654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-16  Score=138.63  Aligned_cols=192  Identities=5%  Similarity=-0.100  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhC--CCHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD-KKEAAISLYRQAAVL--GDPAGQFNLG  176 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~-~~~~A~~~~~~a~~~--~~~~a~~~Lg  176 (342)
                      .++..+|.++..+    +.+++|+..|.+|++.  .+..++++.|.++...+ ++++|+.+++++++.  .+..+++++|
T Consensus        44 ~a~~~~~~~~~~~----e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          44 DVYDYFRAVLQRD----ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHT----CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC----CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            3344455555552    4556666666666654  25566666666655543 466666666665533  5566666666


Q ss_pred             HHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Q 019340          177 ISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFG  252 (342)
Q Consensus       177 ~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g  252 (342)
                      .++.  ..+++++|+.+|.++++.  .+..+++++|.++..    .+++++|+.+|+++++.  .+..+++++|.++...
T Consensus       120 ~~~~--~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         120 VLVE--WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHH--HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHH--hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            6666  555666666666666553  356666666666655    44556666666666654  3555666666655332


Q ss_pred             CC--CcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          253 EG--LPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       253 ~g--~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ..  ...++++|+.++.+++..  ++..+++++|.++...+ .+++...+.++++.
T Consensus       194 ~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             cccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence            11  123355666666666554  34555566666544332 35555555555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-14  Score=128.27  Aligned_cols=176  Identities=8%  Similarity=-0.071  Sum_probs=151.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQP-ANAEEAVKLLYQASIA--GHVRAQYQLA  210 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~-~~~~~A~~~~~~a~~~--~~~~a~~~lg  210 (342)
                      ..+++..+|.++...+.+++|+..+++|++.  .+..++++.|.++.  .. +++++|+.+++++++.  .+..+++++|
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~--~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK--SLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            3567778899999999999999999999865  88999999999988  54 4799999999999874  6899999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhh
Q 019340          211 LCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLF  286 (342)
Q Consensus       211 ~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~  286 (342)
                      .++..    .+++++|+.+|.++++.  .+..+++++|.++..    .+++++|+.+|+++++.  .+..+++++|.++.
T Consensus       120 ~~~~~----l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         120 VLVEW----LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHh----hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            99987    77899999999999986  589999999999965    34899999999999987  56899999999987


Q ss_pred             hcCC------HHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcC
Q 019340          287 TEGE------MMKAVVYLELATRAGE--TAADHVKNVILQQLS  321 (342)
Q Consensus       287 ~~~~------~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~  321 (342)
                      ..+.      +++|+.++.++++..|  ..+..+++.++....
T Consensus       192 ~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~  234 (315)
T d2h6fa1         192 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG  234 (315)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Confidence            7664      7899999999999864  566677777765543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=4.4e-14  Score=119.84  Aligned_cols=209  Identities=14%  Similarity=-0.008  Sum_probs=148.0

Q ss_pred             CHHHHHHHHHHHHhC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHH
Q 019340          120 NLDKALDSFLKGAAR------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAV  191 (342)
Q Consensus       120 ~~~~A~~~~~~A~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~  191 (342)
                      ..+.|+..+.+++..      ..+.+++.+|.+|...|++++|+..|+++++.  +++.+++++|.+|.  ..+++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~--~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH--HHHHHHHhh
Confidence            455666777777653      24568899999999999999999999999865  89999999999999  999999999


Q ss_pred             HHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 019340          192 KLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMK  267 (342)
Q Consensus       192 ~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  267 (342)
                      .+|+++++.  +++.+++++|.+|..    .+++++|+..|+++++.  .+......++.++...     +..+....+.
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~  162 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-----DEKQAKEVLK  162 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----CHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHH----HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh-----hhHHHHHHHH
Confidence            999999874  689999999999987    77999999999999986  4566666777666431     2233333333


Q ss_pred             HH-HHcCCHHHHHHHHHHhhh----cCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          268 RA-ADCGHGKAQLEHGLGLFT----EGEMMKAVVYLELATRAGE--TAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       268 ~a-~~~~~~~a~~~Lg~~~~~----~~~~~~A~~~~~~a~~~~~--~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      .. ...........+...+..    .+..+.+...+..+....+  .++..+++.++  ...++.++|...+++..+..|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         163 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY--LSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHcCC
Confidence            33 333222112223332322    2234445555555444443  34444555555  555899999999999888777


Q ss_pred             C
Q 019340          341 L  341 (342)
Q Consensus       341 ~  341 (342)
                      .
T Consensus       241 ~  241 (259)
T d1xnfa_         241 H  241 (259)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1e-12  Score=115.08  Aligned_cols=251  Identities=12%  Similarity=0.013  Sum_probs=177.0

Q ss_pred             HHHhhCCChhHHhhHHHHHHHHHHhCcCCC---HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHH
Q 019340           71 KIAASFTLPQLRAASLVCKSWNDALRPLRE---AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLA  139 (342)
Q Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a  139 (342)
                      ++...+..|++.+|...+.+.++..+....   ..+++.+|.+|..    .|++++|+.+|+++++.    ++    ..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC----KGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            444567889999999999988887665432   4688899999998    68999999999999874    22    356


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC-------C
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL----------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG-------H  202 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~-------~  202 (342)
                      +..++.++...+++..|+..+.+++..          ........+|.++.  ..++++.+..++.++....       .
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW--AWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH--HhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            788999999999999999999998742          12346677889988  8889999999999887631       3


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C-----CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC
Q 019340          203 VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G-----YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG  273 (342)
Q Consensus       203 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  273 (342)
                      ..+...++.++..    .+++.++...+.++...    +     ...++..++.++... |   ++++|..+++++....
T Consensus       172 ~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         172 LQCLAMLIQCSLA----RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-G---DKAAAANWLRHTAKPE  243 (366)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc-c---cHHHHHHHHHHHHHhc
Confidence            5566777777765    55777777777777652    1     123455566666442 2   7777888877776531


Q ss_pred             ------CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHc----C--cHHHHHHHHHHHhhcChhcHHHHHHHHHhh
Q 019340          274 ------HGKAQLEHGLGLFTEGEMMKAVVYLELATRA----G--ETAADHVKNVILQQLSATSRDRAMLVVDSW  335 (342)
Q Consensus       274 ------~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~----~--~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  335 (342)
                            ....+.++|.++...|++++|..++++++..    +  +..+.........+...++.++|.+.+++.
T Consensus       244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                  1345567777788888888888888777643    1  223333333444444557777777766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=5.2e-12  Score=109.30  Aligned_cols=191  Identities=16%  Similarity=0.090  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC--
Q 019340          103 VLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----GS----TLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD--  168 (342)
Q Consensus       103 a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~--  168 (342)
                      .+...|.+|..    .+++++|++.|.+|++.    ++    +.++.++|.+|...|++++|+.+|+++++.    ++  
T Consensus        39 ~y~~aa~~y~~----~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          39 LCVQAATIYRL----RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHH----TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            34455777776    46777777777777663    22    245667777777777777777777777643    22  


Q ss_pred             --HHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC-
Q 019340          169 --PAGQFNLGISYLQAQPANAEEAVKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG-  237 (342)
Q Consensus       169 --~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~-  237 (342)
                        ..++.++|.+|.. ..+++++|+.+|+++++.    ++    ..++.++|.+|..    .+++.+|+.+|++++... 
T Consensus       115 ~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         115 RGANFKFELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             HHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHhCc
Confidence              3456666666641 346777777777776642    21    3446667777766    567777777777776642 


Q ss_pred             -C-------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC-------HHHHHHHHHHhhh--cCCHHHHHHHHHH
Q 019340          238 -Y-------VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH-------GKAQLEHGLGLFT--EGEMMKAVVYLEL  300 (342)
Q Consensus       238 -~-------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~~~~--~~~~~~A~~~~~~  300 (342)
                       .       ...+..+|.++..    ..++..|...+.++.+..+       ......|...+..  .+.+++|+..|.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~----~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         190 GNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             SCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             cchhhhhhHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             1       1234555665543    2267777777777655421       1122344444433  2346677777766


Q ss_pred             HHHcCc
Q 019340          301 ATRAGE  306 (342)
Q Consensus       301 a~~~~~  306 (342)
                      +.++++
T Consensus       266 ~~~lD~  271 (290)
T d1qqea_         266 FMRLDK  271 (290)
T ss_dssp             SSCCCH
T ss_pred             HhhcCH
Confidence            665554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=6.1e-14  Score=124.06  Aligned_cols=221  Identities=6%  Similarity=-0.160  Sum_probs=151.8

Q ss_pred             hhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHH-HHHHHHHhcCCCHHH
Q 019340           79 PQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAM-VDAGLMYWEMDKKEA  155 (342)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~-~~lg~~~~~~~~~~~  155 (342)
                      +.+.++...+...++..++  +..+++.+|.++..- + ..+.++|+..+.++++.+  +..++ ..+|.++...+++++
T Consensus        87 ~~~~~al~~~~~~l~~~pk--~~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPK--SYGTWHHRCWLLSRL-P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC-S-SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC--cHHHHHHhhHHHHHh-c-cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            3455566566666655443  666777777666551 1 346778888888877753  45554 466777777788888


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 019340          156 AISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG--HVRAQYQLALCLHRGRGVDFNLQEAARWYL  231 (342)
Q Consensus       156 A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  231 (342)
                      |+.++++++..  .+..+++++|.++.  ..+++++|+..++++.+..  ..+....++..        ...+++...|.
T Consensus       163 Al~~~~~~i~~~p~~~~a~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~a~~~~~  232 (334)
T d1dcea1         163 ELAFTDSLITRNFSNYSSWHYRSCLLP--QLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYH  232 (334)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHH--HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH--HhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHh--------cchhHHHHHHH
Confidence            88888887755  67788888888877  6666666666665544432  22222222111        12345778888


Q ss_pred             HHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH
Q 019340          232 RAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCG--HGKAQLEHGLGLFTEGEMMKAVVYLELATRAGET  307 (342)
Q Consensus       232 ~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~  307 (342)
                      +++..  ....++..+|.++..    .+++.+|+..+.+++..+  +..+++.+|.+|...|++++|+.+|+++++.+|.
T Consensus       233 ~~l~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         233 RWLLGRAEPLFRCELSVEKSTV----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHSCCCCSSSCCCCHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HHHHhCcchhhHHHHHHHHHHH----HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            88776  345566677777754    449999999999998874  4678899999999999999999999999999997


Q ss_pred             HHHHHHHHHH
Q 019340          308 AADHVKNVIL  317 (342)
Q Consensus       308 ~a~~~~~~~~  317 (342)
                      .+.+...+..
T Consensus       309 ~~~y~~~L~~  318 (334)
T d1dcea1         309 RAAYLDDLRS  318 (334)
T ss_dssp             GHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            7766554433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-12  Score=106.51  Aligned_cols=124  Identities=20%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGIS  178 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~  178 (342)
                      +..+++.|..+..    .+|+++|++.|.++ ...++.+++++|.+|...|++++|+.+|++|++.  .++.+++++|.+
T Consensus         5 ~~~l~~~g~~~~~----~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           5 AISLWNEGVLAAD----KKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            4556677888877    58888888888874 3356788888888888888888888888888754  778888888888


Q ss_pred             HHcCCccCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          179 YLQAQPANAEEAVKLLYQASIAG------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       179 ~~~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      |.  ..+++++|+..|++++...                  ..++++++|.+|..    .+++++|+..|.+|+.
T Consensus        80 ~~--~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          80 YY--QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATS  148 (192)
T ss_dssp             HH--HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHT
T ss_pred             HH--hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHh
Confidence            88  8888888888888887531                  12444555555544    4455555555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.8e-13  Score=120.99  Aligned_cols=244  Identities=5%  Similarity=-0.139  Sum_probs=174.5

Q ss_pred             HhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHc--CCC----CcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCC--
Q 019340           82 RAASLVCKSWNDALRPLREAMVLLRWGKRFKH--GRG----VRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMD--  151 (342)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~--g~g----~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~--  151 (342)
                      .+|...+.+.++..|+  ++.++...+.++..  ..+    ..+++++|+.+|++++..  .+..+++.+|.++...+  
T Consensus        46 ~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          46 ESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            5777777777776655  66666555555443  000    134577888888888875  47888888888776664  


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHH-HHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHH
Q 019340          152 KKEAAISLYRQAAVL--GDPAGQ-FNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGRGVDFNLQEA  226 (342)
Q Consensus       152 ~~~~A~~~~~~a~~~--~~~~a~-~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A  226 (342)
                      ++++|+..+.++++.  .+..++ ..+|.++.  ..+.+++|+.+++++++.  .+..+++++|.++..    .+++++|
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~----~~~~~~A  197 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ----LHPQPDS  197 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH----HSCCCCS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHH--hccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hcCHHHH
Confidence            588999999998765  456665 46677887  778888999999888764  578889999988875    3344444


Q ss_pred             HHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 019340          227 ARWYLRAAEGGY--VRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELAT  302 (342)
Q Consensus       227 ~~~~~~A~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~  302 (342)
                      +..++++.+...  ......+....        ...++...|.+++..  .+..++..+|.++...+++++|+..+.+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  269 (334)
T d1dcea1         198 GPQGRLPENVLLKELELVQNAFFTD--------PNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE  269 (334)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHC--------SSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444444333211  12222222111        345678888888776  445667788999999999999999999999


Q ss_pred             HcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCCC
Q 019340          303 RAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPSL  341 (342)
Q Consensus       303 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  341 (342)
                      ..++..+.........+...++.++|...+++..+..|.
T Consensus       270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            999888877777777778889999999999999887774

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=8.8e-12  Score=107.84  Aligned_cols=200  Identities=14%  Similarity=0.128  Sum_probs=152.9

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCccCHHHH
Q 019340          119 KNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL----GD----PAGQFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~~~~g~~~~~~~A  190 (342)
                      .++++|.++|.+|            |.+|...+++++|+.+|++|++.    ++    ..++.++|.+|.  ..+++++|
T Consensus        31 ~~~~~Aa~~y~~a------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~--~~~~~~~A   96 (290)
T d1qqea_          31 YKFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK--SGGNSVNA   96 (290)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred             ccHHHHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH--HhCCcHHH
Confidence            4578899888885            67899999999999999999864    34    358899999999  88999999


Q ss_pred             HHHHHHHHHc----CC----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCC
Q 019340          191 VKLLYQASIA----GH----VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG----G----YVRAMYNTSLCYSFGEG  254 (342)
Q Consensus       191 ~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~----~----~~~a~~~lg~~y~~g~g  254 (342)
                      +.+|+++++.    ++    ..++.++|.+|...   .+++++|+.+|++|++.    +    ...++.++|.+|.. .|
T Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~-~g  172 (290)
T d1qqea_          97 VDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-DG  172 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH-cC
Confidence            9999998763    33    56788999988641   46899999999999864    3    24578999999965 33


Q ss_pred             CcccHHHHHHHHHHHHHcCC---------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcH--HH---HHHHH--HHHh
Q 019340          255 LPLSHRQARKWMKRAADCGH---------GKAQLEHGLGLFTEGEMMKAVVYLELATRAGET--AA---DHVKN--VILQ  318 (342)
Q Consensus       255 ~~~~~~~A~~~~~~a~~~~~---------~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~--~a---~~~~~--~~~~  318 (342)
                         ++.+|+.+|++++....         ...+.++|.++...++++.|...++++.+..+.  ++   .....  ....
T Consensus       173 ---~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~  249 (290)
T d1qqea_         173 ---QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN  249 (290)
T ss_dssp             ---CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence               99999999999987521         245688999999999999999999999887643  21   12222  2333


Q ss_pred             hcChhcHHHHHHHHHhhhcCC
Q 019340          319 QLSATSRDRAMLVVDSWRAMP  339 (342)
Q Consensus       319 ~~~~~~~~~a~~~~~~~~~~~  339 (342)
                      ......++++...+.++.++.
T Consensus       250 ~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         250 EGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             TTCTTTHHHHHHHHTTSSCCC
T ss_pred             hcCHHHHHHHHHHHHHHhhcC
Confidence            344566788888777666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-12  Score=103.39  Aligned_cols=141  Identities=16%  Similarity=0.037  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhc
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHR  215 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  215 (342)
                      ..+++.|..+...||+++|+..|.++ ...++.+++++|.+|.  ..|++++|+.+|+++++.  .++.+++++|.+|..
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~--~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYT--ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHH--HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            34567899999999999999999875 4467889999999999  889999999999999874  589999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCC--CHH-HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHH
Q 019340          216 GRGVDFNLQEAARWYLRAAEGG--YVR-AMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMM  292 (342)
Q Consensus       216 g~~~~~~~~~A~~~~~~A~~~~--~~~-a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~  292 (342)
                          .+++++|+..|++|+...  +.. .+..+|..+      .               ....+.++++|.+|...|+++
T Consensus        83 ----~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~------~---------------~~~~e~~~n~a~~~~~~~~~~  137 (192)
T d1hh8a_          83 ----TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF------K---------------LFACEVLYNIAFMYAKKEEWK  137 (192)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC------E---------------EEHHHHHHHHHHHHHHTTCHH
T ss_pred             ----hccHHHHHHHHHHHHHhCccCchHHHHHhhhhc------c---------------cchHHHHHHHHHHHHHCCCHH
Confidence                778999999999997642  110 000011000      0               112456788999999999999


Q ss_pred             HHHHHHHHHHHcCc
Q 019340          293 KAVVYLELATRAGE  306 (342)
Q Consensus       293 ~A~~~~~~a~~~~~  306 (342)
                      +|...|++|+...+
T Consensus       138 ~A~~~l~~A~~~~~  151 (192)
T d1hh8a_         138 KAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999987654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=9.4e-11  Score=102.26  Aligned_cols=220  Identities=12%  Similarity=0.011  Sum_probs=175.9

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC----C------CH
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLRE----AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR----G------ST  137 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~------~~  137 (342)
                      +...+..|++.+|...+....+.....++    ..+++.+|.++..    .+++..|+..+.+++..    .      ..
T Consensus        58 g~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~  133 (366)
T d1hz4a_          58 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQLINEQHLEQLPMHE  133 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence            34456779999999888888776655544    3577888999888    58999999999998763    1      23


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc----C-----
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL-------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA----G-----  201 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~----~-----  201 (342)
                      .....+|.++...|+++.+..++.++...       ....+...++.++.  ..+++.++..++.++...    +     
T Consensus       134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~  211 (366)
T d1hz4a_         134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL--ARGDLDNARSQLNRLENLLGNGKYHSDW  211 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHhcccCch
Confidence            46678999999999999999999998854       23567788888888  788999999999987652    1     


Q ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc---
Q 019340          202 HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG------YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC---  272 (342)
Q Consensus       202 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---  272 (342)
                      ...++..+|.++..    .+++++|..+++++....      ....+.++|.+|.. .|   ++++|..++++++..   
T Consensus       212 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g---~~~~A~~~~~~al~~~~~  283 (366)
T d1hz4a_         212 ISNANKVRVIYWQM----TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL-LG---EFEPAEIVLEELNENARS  283 (366)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHHHHhh
Confidence            24456778888877    678999999999987652      34567889999865 33   999999999999753   


Q ss_pred             -C----CHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 019340          273 -G----HGKAQLEHGLGLFTEGEMMKAVVYLELATRAG  305 (342)
Q Consensus       273 -~----~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~  305 (342)
                       +    ...++..+|.+|...|++++|+.+|++|+++.
T Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence             2    25678999999999999999999999998763

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.3e-13  Score=124.60  Aligned_cols=214  Identities=9%  Similarity=-0.020  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHhcCCCHHHHHHHHH
Q 019340           84 ASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS--TLAMVDAGLMYWEMDKKEAAISLYR  161 (342)
Q Consensus        84 a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~lg~~~~~~~~~~~A~~~~~  161 (342)
                      |...+++..+.-++  .+.+++++|.+|..    .+++++|   |++++..+.  +.++...+.+.  ..-+..+++.++
T Consensus         5 A~q~~~qA~~l~p~--~a~a~~~la~~~~~----~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r   73 (497)
T d1ya0a1           5 SAQYLRQAEVLKAD--MTDSKLGPAEVWTS----RQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHGG--GTCSSSCSSSSHHH----HHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC--CHHHHhhHHHHHHH----HchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence            34444455544444  44455666777666    3556554   667665442  12221111111  122455666666


Q ss_pred             HHHhCC----CH-HHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 019340          162 QAAVLG----DP-AGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       162 ~a~~~~----~~-~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~  234 (342)
                      +.....    .. .....++.++.  ..+.++.++..|+++.+  +.+..++.++|..+..    .++..+|+..+.+++
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~--a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al  147 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEA--ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK----QTHTSAIVKPQSSSC  147 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHH--HHHHHHHHHHHHTC-----------------------------------CCHHH
T ss_pred             HhcccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh----CCCHHHHHHHHHHHh
Confidence            666431    11 12222333333  34556666666665543  3566777788877765    567777888887777


Q ss_pred             HCCCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHH
Q 019340          235 EGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAAD  310 (342)
Q Consensus       235 ~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  310 (342)
                      ......+++++|.++....    ++++|+.||++|++.  ++..++++||.++...|++.+|+.+|.+|+...  .+.|.
T Consensus       148 ~~~~~~~~~~LG~l~~~~~----~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~  223 (497)
T d1ya0a1         148 SYICQHCLVHLGDIARYRN----QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence            7666677888888875522    788888888888775  456778888888888888888888888887653  45666


Q ss_pred             HHHHHHHh
Q 019340          311 HVKNVILQ  318 (342)
Q Consensus       311 ~~~~~~~~  318 (342)
                      .++..++.
T Consensus       224 ~nL~~~~~  231 (497)
T d1ya0a1         224 TNLQKALS  231 (497)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.2e-11  Score=88.35  Aligned_cols=101  Identities=14%  Similarity=0.037  Sum_probs=50.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhcCC
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLHRGR  217 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~  217 (342)
                      ..|..+...|++++|+..|+++++.  .++.+++++|.+|.  ..+++++|+..|.++++.  +++.+++++|.++..  
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~--   83 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA--KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF--   83 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc--ccccccccchhhhhHHHhccchhhHHHHHHHHHHH--
Confidence            4455555555555555555555432  44555555555555  455555555555555442  345555555555554  


Q ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 019340          218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC  248 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~  248 (342)
                        .+++++|+..|+++++.  .++.++..++.+
T Consensus        84 --~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          84 --LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             --TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             --ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence              44555555555555543  344444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3e-11  Score=89.67  Aligned_cols=104  Identities=13%  Similarity=0.009  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY  179 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  179 (342)
                      +...|..+..    .+++++|+..|.++++.  .++.+++++|.+|...|++++|+..|.++++.  +++.+++++|.++
T Consensus         6 l~~~g~~~~~----~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           6 LKEKGNKALS----VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            4556887777    58999999999999886  48899999999999999999999999999864  8899999999999


Q ss_pred             HcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                      .  ..+++++|+.+|+++++.  .++.++..++.+.
T Consensus        82 ~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 E--FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             H--HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             H--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9  899999999999999874  6888888888764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2.5e-11  Score=98.49  Aligned_cols=95  Identities=23%  Similarity=0.252  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHH
Q 019340           99 REAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFN  174 (342)
Q Consensus        99 ~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~  174 (342)
                      +.+..+...|..|..    .|++++|+.+|++|++.  .++.+++++|.+|...|++++|+.+|++|++.  +++.++++
T Consensus         2 ~~a~~l~~~Gn~~~~----~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFV----GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            466777788888888    58888888888888875  47888888888888888888888888888764  67888888


Q ss_pred             HHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          175 LGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       175 Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +|.+|.  ..+++++|+.+|+++++
T Consensus        78 lg~~~~--~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQL--EMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHH--HCCCHHHHHHHHHHHHH
Confidence            888888  88888888888888875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7e-11  Score=92.58  Aligned_cols=106  Identities=12%  Similarity=0.092  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGI  177 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~  177 (342)
                      ..+...|..|..    .+++++|+.+|+++++.  +++.+++++|.+|...|++++|+..|+++++.  .++.+++++|.
T Consensus        11 ~~l~~~gn~~~~----~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~   86 (159)
T d1a17a_          11 EELKTQANDYFK----AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   86 (159)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHH
Confidence            444556777776    57888888888888875  47888888888888888888888888888754  67888888888


Q ss_pred             HHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          178 SYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       178 ~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                      ++.  ..|++++|+.+|++++..  .++.++..++.+.
T Consensus        87 ~~~--~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          87 SNM--ALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHH--HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHH--HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            888  788888888888887764  5777777777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-10  Score=90.45  Aligned_cols=106  Identities=19%  Similarity=0.099  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                      ..+...|..|+..|++++|+.+|+++++.  +++.+++++|.+|.  ..+++++|+..|+++++.  .++.+++++|.+|
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL--RTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH--hccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34556788888899999999999998754  78888999999998  788999999999988774  5788888888888


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Q 019340          214 HRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCY  249 (342)
Q Consensus       214 ~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y  249 (342)
                      ..    .+++++|+.+|++++..  .++.++..++.+.
T Consensus        89 ~~----~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          89 MA----LGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            87    77888888888888875  4677776666664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=5.4e-11  Score=96.40  Aligned_cols=96  Identities=21%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 019340          135 GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLA  210 (342)
Q Consensus       135 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg  210 (342)
                      +++..+...|..|+..|++++|+.+|++|++.  .++.+++++|.+|.  ..+++++|+.+|+++++  ++++.+++++|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~--~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL--KMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh--hhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            35677889999999999999999999999855  88999999999999  89999999999999987  46899999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          211 LCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       211 ~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      .+|..    .+++++|+.+|++|++.
T Consensus        80 ~~~~~----l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLE----MESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH----CCCHHHHHHHHHHHHHh
Confidence            99998    78999999999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.19  E-value=6.8e-11  Score=86.99  Aligned_cols=89  Identities=25%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISY  179 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  179 (342)
                      .+.+|.++..    .+++++|+..|++++..  .++.+++.+|.++...+++++|+.+|+++++.  .++.++++||.+|
T Consensus        19 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          19 PMEEGLSMLK----LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence            3567777777    57888888888888775  37788888888888888888888888887754  6788888888888


Q ss_pred             HcCCccCHHHHHHHHHHHH
Q 019340          180 LQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       180 ~~g~~~~~~~A~~~~~~a~  198 (342)
                      .  ..|++++|+++|++.+
T Consensus        95 ~--~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          95 T--NEHNANAALASLRAWL  111 (112)
T ss_dssp             H--HHHHHHHHHHHHHHHH
T ss_pred             H--HCCCHHHHHHHHHHHh
Confidence            8  7778888888887754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.17  E-value=8.9e-11  Score=86.33  Aligned_cols=90  Identities=13%  Similarity=0.114  Sum_probs=75.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLH  214 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~  214 (342)
                      ..+++|.++...|++++|+..|++++..  .++.+++.+|.++.  ..+++++|+.+|+++++  +.++.+++.||.+|.
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA--ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh--hhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            3577888998999999999999998754  67899999999998  88899999999999877  457888899998888


Q ss_pred             cCCCCCCCHHHHHHHHHHHH
Q 019340          215 RGRGVDFNLQEAARWYLRAA  234 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~  234 (342)
                      .    .+++++|++++++.+
T Consensus        96 ~----~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 N----EHNANAALASLRAWL  111 (112)
T ss_dssp             H----HHHHHHHHHHHHHHH
T ss_pred             H----CCCHHHHHHHHHHHh
Confidence            7    678888888888764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.8e-10  Score=84.82  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC----HHHHHHHHHHhhhcCCHHH
Q 019340          220 DFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH----GKAQLEHGLGLFTEGEMMK  293 (342)
Q Consensus       220 ~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~~~~~~~~~~  293 (342)
                      .+++++|.+.|++++..  .++.+++++|+++... +...++.+|+..|++++..++    ..++++||.+|...|++++
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s-~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            45677888888887774  5777888888877432 224578889999999887643    3478999999999999999


Q ss_pred             HHHHHHHHHHcCc--HHHHHHHHHHHhh
Q 019340          294 AVVYLELATRAGE--TAADHVKNVILQQ  319 (342)
Q Consensus       294 A~~~~~~a~~~~~--~~a~~~~~~~~~~  319 (342)
                      |+.+|+++++..|  ..|..+...+...
T Consensus        91 A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          91 ALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999998865  5566666655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.2e-08  Score=88.28  Aligned_cols=175  Identities=11%  Similarity=-0.027  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340          121 LDKALDSFLKGAAR---GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLG--D-PAGQFNLGISYLQAQPANAEEAVKLL  194 (342)
Q Consensus       121 ~~~A~~~~~~A~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~Lg~~~~~g~~~~~~~A~~~~  194 (342)
                      .++|...|++|++.   .+...++..+.++...|++++|...|++++...  + ...+..++....  ..++++.|...|
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~--~~~~~~~ar~i~  157 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR--RAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH--HHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH--HcCChHHHHHHH
Confidence            34555566665542   234445555555555566666666666655431  1 234444454444  455556666666


Q ss_pred             HHHHHc--CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          195 YQASIA--GHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       195 ~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      +++++.  .....+...+......   .++.+.|...|++++..  .++..+...+.+... .|   ++++|+.+|++|+
T Consensus       158 ~~al~~~~~~~~~~~~~a~~e~~~---~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g---~~~~aR~~fe~ai  230 (308)
T d2onda1         158 KKAREDARTRHHVYVTAALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN---EDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHT---SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC---CHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cC---ChHHHHHHHHHHH
Confidence            665543  2444444444443221   23555566666655553  344555555555432 22   5555666666655


Q ss_pred             HcC--C----HHHHHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 019340          271 DCG--H----GKAQLEHGLGLFTEGEMMKAVVYLELATRA  304 (342)
Q Consensus       271 ~~~--~----~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~  304 (342)
                      ...  +    ...+..........|+.+.+...++++.+.
T Consensus       231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            531  1    112223333333445566655555555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3e-10  Score=84.70  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=36.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHcCC----HHHHHHHHHHHhcCCC
Q 019340          146 MYWEMDKKEAAISLYRQAAV--LGDPAGQFNLGISYLQ-AQPANAEEAVKLLYQASIAGH----VRAQYQLALCLHRGRG  218 (342)
Q Consensus       146 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~~~~-g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~  218 (342)
                      .+...+++++|++.|++++.  +.++++++++|.++.. +..+++++|+..|++++..+.    .+++++||.+|..   
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~---   84 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH---
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH---
Confidence            33344444444444444443  2344444444444432 123333444444444443221    2244444444443   


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 019340          219 VDFNLQEAARWYLRAAE  235 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~  235 (342)
                       .+++++|+.+|+++++
T Consensus        85 -~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          85 -LKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             -TTCHHHHHHHHHHHHH
T ss_pred             -HhhhHHHHHHHHHHHH
Confidence             3344444444444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=7.3e-12  Score=116.76  Aligned_cols=203  Identities=6%  Similarity=-0.107  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Q 019340          123 KALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGD--PAGQFNLGISYLQAQPANAEEAVKLLYQAS  198 (342)
Q Consensus       123 ~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~  198 (342)
                      +|+++|++|++.  +.+++++++|.+|...+++++|   |++++..+.  +.+....+.+..    ..+..++..+++..
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~----~~y~~~ie~~r~~~   76 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN----HAFKNQITTLQGQA   76 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH----HHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH----HHHHHHHHHHHHhc
Confidence            699999999875  5788899999999999999886   888876543  233322222222    12456777787776


Q ss_pred             HcC----CHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 019340          199 IAG----HVRAQ-YQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD  271 (342)
Q Consensus       199 ~~~----~~~a~-~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~  271 (342)
                      +..    ..... ..++.++..    .+.++.++..|.++...  .+..++.++|..+.. .|   +..+|...+++++.
T Consensus        77 k~~~~~~~~~~~~~~~~~l~~a----~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~-~~---~~~~A~~~~~~al~  148 (497)
T d1ya0a1          77 KNRANPNRSEVQANLSLFLEAA----SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK-QT---HTSAIVKPQSSSCS  148 (497)
T ss_dssp             SCSSCTTTTHHHHHHHHHHHHH----HHHHHHHHHHHTC-----------------------------------CCHHHH
T ss_pred             ccccCccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh-CC---CHHHHHHHHHHHhC
Confidence            532    12222 223333332    33566777776666554  567788999999953 33   89999999999998


Q ss_pred             cCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHHHHHhhcChhcHHHHHHHHHhhhcCCC
Q 019340          272 CGHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKNVILQQLSATSRDRAMLVVDSWRAMPS  340 (342)
Q Consensus       272 ~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  340 (342)
                      .....++.+||.++...+++++|+.||++|++..|.++.....+...+...++..+|...+.+-....|
T Consensus       149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            877889999999999999999999999999999766554444444444556888888887776655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1e-09  Score=82.57  Aligned_cols=90  Identities=13%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CC-------HHHHHH
Q 019340          140 MVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GH-------VRAQYQ  208 (342)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~-------~~a~~~  208 (342)
                      +-++|..|+..|++++|+.+|.++++.  .++.+++++|.+|.  ..+++++|+.+|+++++.  .+       ..++..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF--EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH--HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            344555555555555555555555533  44555555555555  555555555555555542  11       223444


Q ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          209 LALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       209 lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      +|.++..    .+++++|+.+|++++.
T Consensus        85 lg~~~~~----~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFK----EEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHH----hCCHHHHHHHHHHHHh
Confidence            4444444    4455555555555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.2e-09  Score=84.87  Aligned_cols=108  Identities=18%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARGS-----------------TLAMVDAGLMYWEMDKKEAAISLYRQA  163 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-----------------~~a~~~lg~~~~~~~~~~~A~~~~~~a  163 (342)
                      +..+...|..+..    .+++++|+.+|++|+...+                 ..++.++|.+|...|++++|+.+++++
T Consensus        13 a~~l~~~G~~~~~----~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1          13 STIVKERGTVYFK----EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            3455667877776    5788999999988886411                 134456777777777777777777776


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          164 AVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       164 ~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      +..  .++.+++++|.+|.  ..+++++|+.+|+++++.  +++.+...++.+..
T Consensus        89 l~~~p~~~~a~~~~g~~~~--~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHL--AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHH--HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            643  56777777777777  667777777777776653  46666666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-09  Score=81.79  Aligned_cols=104  Identities=14%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC-------H
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD-------P  169 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~-------~  169 (342)
                      +..+-.+|..|..    .+++++|+.+|.++++.+  ++.+++++|.+|...|++++|+..|+++++.  .+       .
T Consensus         4 a~~~k~~G~~~~~----~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_           4 ALKEKELGNDAYK----KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4566789999998    599999999999999974  8899999999999999999999999999864  23       2


Q ss_pred             HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 019340          170 AGQFNLGISYLQAQPANAEEAVKLLYQASIA-GHVRAQYQLA  210 (342)
Q Consensus       170 ~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg  210 (342)
                      .+++.+|.++.  ..+++++|+.+|++++.. .+++....+.
T Consensus        80 ~~~~~lg~~~~--~~~~~~~A~~~~~kal~~~~~~~~~~~l~  119 (128)
T d1elra_          80 KAYARIGNSYF--KEEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            46777778877  789999999999998765 3555544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=4.2e-09  Score=82.99  Aligned_cols=105  Identities=14%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC------------------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 019340          104 LLRWGKRFKHGRGVRKNLDKALDSFLKGAAR------------------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAV  165 (342)
Q Consensus       104 ~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~  165 (342)
                      +...|..+..    .+++++|+..|.+|+..                  ....++.++|.+|...|++++|+..|.++++
T Consensus        30 ~~~~~~~~~~----~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          30 LKNIGNTFFK----SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            3456777766    58999999999998752                  1233456677777777777777777777765


Q ss_pred             C--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          166 L--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       166 ~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      .  +++.+++++|.+|.  ..+++++|+..|+++++.  +++.+...|+.++.
T Consensus       106 ~~p~~~~a~~~~g~~~~--~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQ--GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             TCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHhHHHHHH--HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4  66777777777777  666777777777776664  46666666666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=8e-09  Score=80.00  Aligned_cols=107  Identities=15%  Similarity=0.228  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC-------C-----------HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG-------S-----------TLAMVDAGLMYWEMDKKEAAISLYRQA  163 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-------~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~a  163 (342)
                      ..+...|..+..    .+++.+|+..|.+|+..-       +           ...+.++|.+|...|++++|+.+|+++
T Consensus        18 ~~~~~~G~~~f~----~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          18 FDIKEEGNEFFK----KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            444556777766    478999999999988631       1           124567777887788888888888887


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Q 019340          164 AVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQYQLALCLH  214 (342)
Q Consensus       164 ~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~  214 (342)
                      ++.  .++.+++++|.+|.  ..+++++|+.+|+++++  ++++.+...++.+..
T Consensus        94 l~~~p~~~ka~~~~g~~~~--~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANM--YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            654  66778888888877  77788888888887765  356777777766653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.2e-09  Score=82.16  Aligned_cols=128  Identities=12%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRG  216 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g  216 (342)
                      +..+...|..++..|++++|+.+|++++...+..          .+...........+       ...++.++|.||.. 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~----------~~~~~~~~~~~~~~-------~~~~~~nla~~y~k-   74 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE----------SSFSNEEAQKAQAL-------RLASHLNLAMCHLK-   74 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----------CCCCSHHHHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc----------cccchHHHhhhchh-------HHHHHHHHHHHHHh-
Confidence            3456678999999999999999999998641100          00000000000000       12244556666655 


Q ss_pred             CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC
Q 019340          217 RGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG  289 (342)
Q Consensus       217 ~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~  289 (342)
                         .+++++|+.++++++..  .++.+++.+|.+|.. .|   ++++|+.+|+++++.  +++.+...++.+....+
T Consensus        75 ---~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-~g---~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          75 ---LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VN---DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             ---hhhcccccchhhhhhhccccchhhhHHHHHHHHH-hh---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence               55666666666666554  356666666666643 22   666666666666554  34555556666554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.95  E-value=8.7e-09  Score=81.08  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC-----C------------CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019340          101 AMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR-----G------------STLAMVDAGLMYWEMDKKEAAISLYRQA  163 (342)
Q Consensus       101 a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a  163 (342)
                      +..+...|..+..    .+++.+|+..|.+|+..     .            ....+.++|.+|...|++++|+.+++++
T Consensus        15 a~~~~e~G~~~~~----~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          15 AAIVKEKGTVYFK----GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            4556667888887    58899999999888852     0            1133456777777777777777777777


Q ss_pred             HhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHh
Q 019340          164 AVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIA--GHVRAQYQLALCLH  214 (342)
Q Consensus       164 ~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~  214 (342)
                      +..  +++.+++++|.+|.  ..+++++|+.+|+++++.  +++.+...++.+..
T Consensus        91 l~l~p~~~~a~~~~~~~~~--~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQL--LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            653  66777777777777  677777777777777664  46667666666653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=4.9e-07  Score=77.87  Aligned_cols=210  Identities=10%  Similarity=-0.054  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhc--------------CCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHc
Q 019340          121 LDKALDSFLKGAAR--GSTLAMVDAGLMYWE--------------MDKKEAAISLYRQAAVL---GDPAGQFNLGISYLQ  181 (342)
Q Consensus       121 ~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~--------------~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~~~~  181 (342)
                      .+.+...|++|+..  .++..|+..+..+..              .+..++|...|++|++.   .++..+..++.++. 
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~-  110 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-  110 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence            45566778887774  577777666654432              24578999999999864   56677888888888 


Q ss_pred             CCccCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCc
Q 019340          182 AQPANAEEAVKLLYQASIAG---HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGG--YVRAMYNTSLCYSFGEGLP  256 (342)
Q Consensus       182 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~y~~g~g~~  256 (342)
                       ..++.++|...|+++++..   ...++..++.+...    .++.++|...|.+++...  ....+...+.......|  
T Consensus       111 -~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~----~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~--  183 (308)
T d2onda1         111 -SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR----AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--  183 (308)
T ss_dssp             -HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH----HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--
T ss_pred             -hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc--
Confidence             7899999999999998753   34577888888876    568999999999999874  56677777776544444  


Q ss_pred             ccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCc---HHHH-HHHHHHHhhcChhcHHHHHH
Q 019340          257 LSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGE---TAAD-HVKNVILQQLSATSRDRAML  330 (342)
Q Consensus       257 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~---~~a~-~~~~~~~~~~~~~~~~~a~~  330 (342)
                       +.+.|...|++++..  .++..+..++..+...|+++.|+.+|++|+...+   .+.. .....+.-....|+.+.++.
T Consensus       184 -~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         184 -DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             -CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             899999999999986  6688899999999999999999999999998642   2211 11122222234467777777


Q ss_pred             HHHhhhcCC
Q 019340          331 VVDSWRAMP  339 (342)
Q Consensus       331 ~~~~~~~~~  339 (342)
                      +.++..+..
T Consensus       263 ~~~r~~~~~  271 (308)
T d2onda1         263 VEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            777665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=7.2e-09  Score=81.59  Aligned_cols=127  Identities=16%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Q 019340          139 AMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRG  218 (342)
Q Consensus       139 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~  218 (342)
                      .....|..+...|++++|+..|.+++......      ..     .....+..     .+.+....++.++|.||..   
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------~~-----~~~~~~~~-----~~~~~~~~~~~nla~~~~~---   89 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------RA-----AAEDADGA-----KLQPVALSCVLNIGACKLK---   89 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------HH-----HSCHHHHG-----GGHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------hh-----hhhhHHHH-----HhChhhHHHHHHHHHHHHh---
Confidence            34568888999999999999999987521000      00     00000000     0122234555666666665   


Q ss_pred             CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcC
Q 019340          219 VDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGLFTEG  289 (342)
Q Consensus       219 ~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~  289 (342)
                       .+++++|+..|++|++.  +++.+++++|.+|.. .|   ++++|+..|+++++.  ++..+...|+.++....
T Consensus        90 -~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~---~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          90 -MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LK---EYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             -TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             -hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-cc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence             55666666666666654  456666666666643 22   666666666666654  44555666666554433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.7e-09  Score=73.89  Aligned_cols=73  Identities=15%  Similarity=0.018  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH--cCCHHHH
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVL---------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI--AGHVRAQ  206 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~--~~~~~a~  206 (342)
                      +.++++|.++...|++++|+.||++|++.         ..++++.+||.+|.  ..|++++|+.+|+++++  ++++.++
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~--~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY--QQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH--hcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            34455555555555555555555555432         11345555555555  55555555555555544  3455555


Q ss_pred             HHHHHH
Q 019340          207 YQLALC  212 (342)
Q Consensus       207 ~~lg~~  212 (342)
                      ++++.+
T Consensus        84 ~Nl~~~   89 (95)
T d1tjca_          84 GNLKYF   89 (95)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.89  E-value=2.5e-08  Score=77.06  Aligned_cols=124  Identities=13%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 019340          138 LAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGR  217 (342)
Q Consensus       138 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~  217 (342)
                      ..+...|..++..|++.+|+..|.+|+..-.            . .............+.+   ....+.++|.||..  
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~------------~-~~~~~~~~~~~~~~~~---~~~~~~Nla~~~~~--   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI------------H-TEEWDDQILLDKKKNI---EISCNLNLATCYNK--   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT------------T-CTTCCCHHHHHHHHHH---HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc------------c-hhhhhhHHHHHhhhhH---HHHHHhhHHHHHHH--
Confidence            4456688888899999999999999986310            0 0000000000000000   11344555555555  


Q ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHh
Q 019340          218 GVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC--GHGKAQLEHGLGL  285 (342)
Q Consensus       218 ~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~  285 (342)
                        .+++++|+.+|++|++.  .+..+++++|.+|..    .+++++|+.+|+++++.  ++..+...++.+.
T Consensus        80 --l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          80 --NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             --TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             --hcccchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              44555566666555554  345556666666543    22566666666666554  3455555555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=3.5e-08  Score=77.51  Aligned_cols=106  Identities=17%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVLG-----------------DPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                      +..+...|..++..|++++|+.+|++|+..-                 ....+.++|.||.  ..+++.+|+.++++++.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~--~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL--KLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH--Hhhhcccchhhhhhhhh
Confidence            4556789999999999999999999988520                 0122334444444  44455555555554444


Q ss_pred             --cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Q 019340          200 --AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLC  248 (342)
Q Consensus       200 --~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~  248 (342)
                        +.++.+++++|.+|..    .+++++|+..|.+++..  ++..+...++.+
T Consensus        93 l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence              2344444555544444    34444444444444443  233444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.5e-09  Score=72.97  Aligned_cols=77  Identities=10%  Similarity=-0.024  Sum_probs=67.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CC
Q 019340          100 EAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR---------GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GD  168 (342)
Q Consensus       100 ~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~  168 (342)
                      .+..+|.+|.++..    .+|+++|+.||++|++.         ..+.++.+||.+|...|++++|+.+|+++++.  ++
T Consensus         4 saddc~~lG~~~~~----~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           4 TAEDSFELGKVAYT----EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            36778999999999    59999999999999875         12678999999999999999999999999855  88


Q ss_pred             HHHHHHHHHHHH
Q 019340          169 PAGQFNLGISYL  180 (342)
Q Consensus       169 ~~a~~~Lg~~~~  180 (342)
                      +.++.+++.+..
T Consensus        80 ~~a~~Nl~~~~~   91 (95)
T d1tjca_          80 QRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.75  E-value=4e-08  Score=75.22  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-CC
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEM----------DKKEAAISLYRQAAVL--GDPAGQFNLGISYLQ-AQ  183 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~----------~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~-g~  183 (342)
                      +.+++|+..|++|++.  +++++++++|.++...          +.+++|+..|++|++.  +++.+++++|.+|.. |.
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            4578899999998875  5888899999888754          4567888888888754  778888888888862 11


Q ss_pred             --------ccCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 019340          184 --------PANAEEAVKLLYQASIA--GHVRAQYQLALCL  213 (342)
Q Consensus       184 --------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~  213 (342)
                              .+++++|+.+|+++++.  ++..++..|+.+.
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                    12456666677766553  4666666666554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.65  E-value=6.9e-08  Score=74.73  Aligned_cols=86  Identities=8%  Similarity=-0.023  Sum_probs=57.3

Q ss_pred             HHHHHcCCCCcCCHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-------
Q 019340          108 GKRFKHGRGVRKNLDKALDSFLKGAARG--------------STLAMVDAGLMYWEMDKKEAAISLYRQAAVL-------  166 (342)
Q Consensus       108 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------  166 (342)
                      |..+..    .+++++|+..|++|++..              .+.++.++|.+|...|++++|+..+.+++..       
T Consensus        16 g~~~~~----~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          16 AQRQLV----AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHH----HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            555555    467888888888887631              1345667777777777777777777777642       


Q ss_pred             ------CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Q 019340          167 ------GDPAGQFNLGISYLQAQPANAEEAVKLLYQASI  199 (342)
Q Consensus       167 ------~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~  199 (342)
                            ....+++++|.+|.  ..+++++|+.+|+++++
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~--~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALD--GLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence                  01335666777777  66677777777777664

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=1.1e-07  Score=72.75  Aligned_cols=102  Identities=9%  Similarity=-0.085  Sum_probs=57.8

Q ss_pred             ccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcccHHH
Q 019340          184 PANAEEAVKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQ  261 (342)
Q Consensus       184 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~~~lg~~y~~g~g~~~~~~~  261 (342)
                      .+.+++|+..|+++++  ++++++++++|.++..-    .++..+.+                          ..+.+++
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~----~~~~~~~e--------------------------~~~~~~~   59 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL----SQFHSISD--------------------------AKQMIQE   59 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----HHHSCHHH--------------------------HHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHh----hhhhhhhH--------------------------HHHHHHH
Confidence            4457778888887755  46777888888777530    00000000                          0124455


Q ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHhhhcC-----------CHHHHHHHHHHHHHcCcHHHHHHHHH
Q 019340          262 ARKWMKRAADC--GHGKAQLEHGLGLFTEG-----------EMMKAVVYLELATRAGETAADHVKNV  315 (342)
Q Consensus       262 A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~-----------~~~~A~~~~~~a~~~~~~~a~~~~~~  315 (342)
                      |+.+|++|++.  .++.+++++|.+|...|           ++++|..+|++|++..|.+..+..++
T Consensus        60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence            55555555543  34555555665554432           46778888888888776555444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.63  E-value=8.7e-08  Score=74.16  Aligned_cols=88  Identities=18%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhC--C------------CHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcC------
Q 019340          142 DAGLMYWEMDKKEAAISLYRQAAVL--G------------DPAGQFNLGISYLQAQPANAEEAVKLLYQASIAG------  201 (342)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~a~~~--~------------~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~------  201 (342)
                      ..|..++..|++++|+..|++|++.  .            ...++.++|.+|.  ..+++++|+..+++++...      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~--~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA--GLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH--HcCccchhhHhhhhhhhcccccccc
Confidence            3477787889999999999998853  1            1357778888888  7888888888888877521      


Q ss_pred             -------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          202 -------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       202 -------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                             ...+++++|.+|..    .+++++|+.+|++|++
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHH
Confidence                   13355666666665    5566666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=1.9e-05  Score=62.04  Aligned_cols=29  Identities=7%  Similarity=-0.018  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhC
Q 019340          102 MVLLRWGKRFKHGRGVRKNLDKALDSFLKGAAR  134 (342)
Q Consensus       102 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~  134 (342)
                      .++...|.....    .+++++|+..|.+|+.+
T Consensus        12 ~~~~~~g~~~~~----~g~~e~A~~~~~~AL~l   40 (179)
T d2ff4a2          12 VAEKTAGVHAAA----AGRFEQASRHLSAALRE   40 (179)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHhh
Confidence            345556666666    37888888888888775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=2.1e-05  Score=61.77  Aligned_cols=114  Identities=13%  Similarity=-0.086  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 019340          137 TLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLH  214 (342)
Q Consensus       137 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  214 (342)
                      ..++...|......|++++|+..|.+|+..  |+....+..         ..  - +.-....+......++.+++.++.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~---------~~--w-~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD---------FQ--F-VEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT---------ST--T-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc---------hH--H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778999999999999999999999976  332111000         00  0 000011122233455666666666


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH
Q 019340          215 RGRGVDFNLQEAARWYLRAAEG--GYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAA  270 (342)
Q Consensus       215 ~g~~~~~~~~~A~~~~~~A~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  270 (342)
                      .    .+++.+|+.++++++..  .+..++..++.+|.. .|   ++.+|+..|+++.
T Consensus        79 ~----~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~-~G---r~~eAl~~y~~~~  128 (179)
T d2ff4a2          79 A----CGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SD---RQSDALGAYRRVK  128 (179)
T ss_dssp             H----TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHH
T ss_pred             H----CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc---CHHHHHHHHHHHH
Confidence            5    55666666666666654  356666666666643 23   6666666666653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.95  E-value=4e-06  Score=70.39  Aligned_cols=111  Identities=12%  Similarity=-0.010  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLL  194 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~  194 (342)
                      +++++|+..|+++++.  +++.+...+|.+|...|++++|+..|+++++.  ++..+...++.++.  ..+...++...+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~--a~~~~~~a~~~~   87 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK--AAQARKDFAQGA   87 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--HHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--hccccHHHHHHh
Confidence            6777888888887775  47777778888887778888888888877755  55666666666665  333333333332


Q ss_pred             HHHHHcCC---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 019340          195 YQASIAGH---VRAQYQLALCLHRGRGVDFNLQEAARWYLRAAE  235 (342)
Q Consensus       195 ~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~  235 (342)
                      .+....+.   ...+...+.++..    .++.++|...+.++.+
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEE  127 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             hhhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHh
Confidence            22221222   2333444444444    4466666666666654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.85  E-value=7.3e-06  Score=68.72  Aligned_cols=121  Identities=11%  Similarity=-0.022  Sum_probs=95.8

Q ss_pred             HHhhCCChhHHhhHHHHHHHHHHhCcCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Q 019340           72 IAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG--STLAMVDAGLMYWE  149 (342)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~lg~~~~~  149 (342)
                      ....+..|++.+|...+....+..+.  ++.+...||.+|..    .|++++|+..|+++++..  +..+...++.++..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~----~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCI----DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            34568899999999999998888766  99999999999999    699999999999999974  77888888888876


Q ss_pred             CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHcCCccCHHHHHHHHHHHHHc
Q 019340          150 MDKKEAAISLYRQAAVLGDP---AGQFNLGISYLQAQPANAEEAVKLLYQASIA  200 (342)
Q Consensus       150 ~~~~~~A~~~~~~a~~~~~~---~a~~~Lg~~~~~g~~~~~~~A~~~~~~a~~~  200 (342)
                      .+..+++...+.+....+++   .+....+.++.  ..++.++|+..++++.+.
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~--~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSM--VSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhc
Confidence            66666665555444333333   44555667777  789999999999998774

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=8.7e-05  Score=53.67  Aligned_cols=82  Identities=11%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHcC--cHHHHHH
Q 019340          238 YVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADCGH---GKAQLEHGLGLFTEGEMMKAVVYLELATRAG--ETAADHV  312 (342)
Q Consensus       238 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  312 (342)
                      ...+.++.|+++.... ...+..+++..|+.+...++   -+++|+||..|+..|++++|..+++++++..  +..+...
T Consensus        34 s~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             CHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            4678899999886543 35689999999999987542   4788999999999999999999999999985  5566666


Q ss_pred             HHHHHhhc
Q 019340          313 KNVILQQL  320 (342)
Q Consensus       313 ~~~~~~~~  320 (342)
                      ...+...+
T Consensus       113 ~~~Ie~~~  120 (124)
T d2pqrb1         113 KSMVEDKI  120 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.0011  Score=47.73  Aligned_cols=80  Identities=1%  Similarity=-0.134  Sum_probs=59.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHH
Q 019340           98 LREAMVLLRWGKRFKHGRGVRKNLDKALDSFLKGAARG---STLAMVDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQ  172 (342)
Q Consensus        98 ~~~a~a~~~lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~  172 (342)
                      .....+.|.+|.+..+. ....+.++++.+++.....+   ..+.++.||..|...|++++|..+++++++.  ++..|.
T Consensus        32 ~~s~qt~F~YAw~Lv~S-~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKS-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             GSCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCcchHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            34567777777777653 23467888999999988753   3478899999999999999999999998754  777776


Q ss_pred             HHHHHH
Q 019340          173 FNLGIS  178 (342)
Q Consensus       173 ~~Lg~~  178 (342)
                      ...-.|
T Consensus       111 ~L~~~I  116 (124)
T d2pqrb1         111 ALKSMV  116 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=1.8  Score=37.46  Aligned_cols=111  Identities=9%  Similarity=-0.074  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHHHHhC--CCHHHHH----HHHHHHhcCCCHHHHHHHHHHHHhC-CCHHH-HHHHHHHHHcCCccCHHHH
Q 019340          119 KNLDKALDSFLKGAAR--GSTLAMV----DAGLMYWEMDKKEAAISLYRQAAVL-GDPAG-QFNLGISYLQAQPANAEEA  190 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~--~~~~a~~----~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a-~~~Lg~~~~~g~~~~~~~A  190 (342)
                      +|.+.|...+.+....  -......    .++..+...+..+.+..++...... .+... ...++.+..   .++...+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~---~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALG---TGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---HTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHH---cCChHHH
Confidence            4666666666654442  1222221    2222223335556666666555443 22222 222333222   3455566


Q ss_pred             HHHHHHHHH--cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHC
Q 019340          191 VKLLYQASI--AGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEG  236 (342)
Q Consensus       191 ~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~  236 (342)
                      ..++.....  ...+.+.|.+|..+..    .++.++|..+|..++..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~----~G~~~~A~~~~~~~a~~  348 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLE----RGREAEAKEILHQLMQQ  348 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTS
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHH----cCChhhHHHHHHHHhcC
Confidence            666554321  1245666666666665    45666666666666654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=8.8  Score=32.73  Aligned_cols=143  Identities=8%  Similarity=-0.124  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHhCC-CHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCccCHHHHHHHH
Q 019340          119 KNLDKALDSFLKGAARG-STLAM-VDAGLMYWEMDKKEAAISLYRQAAVL--GDPAGQFNLGISYLQAQPANAEEAVKLL  194 (342)
Q Consensus       119 ~~~~~A~~~~~~A~~~~-~~~a~-~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~g~~~~~~~A~~~~  194 (342)
                      +..+.+..++....... +.... ..++. ....++...+..++......  ..+.+.|.+|..+.  ..|+.++|..+|
T Consensus       266 ~~~~~a~~~~~~~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~--~~G~~~~A~~~~  342 (450)
T d1qsaa1         266 DVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLL--ERGREAEAKEIL  342 (450)
T ss_dssp             TCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred             CchHHHHHHHHhhcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHH--HcCChhhHHHHH
Confidence            44455555555544432 22222 22222 23345555555555543211  33555566666665  555666666666


Q ss_pred             HHHHHcC--------------------------------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q 019340          195 YQASIAG--------------------------------HVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAM  242 (342)
Q Consensus       195 ~~a~~~~--------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~A~~~~~~~a~  242 (342)
                      ..+....                                .+..  ..+..+..    .+....|...+..++...++.-.
T Consensus       343 ~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~--~ra~~L~~----~g~~~~A~~e~~~l~~~~~~~~~  416 (450)
T d1qsaa1         343 HQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM--ARVRELMY----WNLDNTARSEWANLVKSKSKTEQ  416 (450)
T ss_dssp             HHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH--HHHHHHHH----TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHH--HHHHHHHH----cCCchHHHHHHHHHHhCCCHHHH
Confidence            6543211                                1111  11222333    45788999999888887788888


Q ss_pred             HHHHHHHHcCCCCcccHHHHHHHHHHHHHcCC
Q 019340          243 YNTSLCYSFGEGLPLSHRQARKWMKRAADCGH  274 (342)
Q Consensus       243 ~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  274 (342)
                      ..++.+... .|   .++.|+....++-..++
T Consensus       417 ~~la~lA~~-~g---~~~~aI~a~~~~~~~d~  444 (450)
T d1qsaa1         417 AQLARYAFN-NQ---WWDLSVQATIAGKLWDH  444 (450)
T ss_dssp             HHHHHHHHH-TT---CHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHH-CC---ChhHHHHHHHHHHccCc
Confidence            888877644 44   89999988777644344

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=83.61  E-value=4.5  Score=28.32  Aligned_cols=39  Identities=15%  Similarity=0.115  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCHHHHHH
Q 019340          136 STLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFN  174 (342)
Q Consensus       136 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~  174 (342)
                      +++.+..+|..|...|+..++-+.+++|.+.|-.+|..+
T Consensus       119 ~~~~llkia~A~kkig~~re~nell~~ACe~G~KeAC~~  157 (161)
T d1wy6a1         119 SASILVAIANALRRVGDERDATTLLIEACKKGEKEACNA  157 (161)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHH
Confidence            556666666666666666666666666666666665544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.90  E-value=1.1  Score=29.67  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=21.9

Q ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 019340          255 LPLSHRQARKWMKRAADCGHGKAQLEHGLGLFTEGEMMKAVVYLELATR  303 (342)
Q Consensus       255 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~  303 (342)
                      ...+..+|+.++++|++             +...|++++|+.+|..|++
T Consensus         8 ~~~~~~~A~~l~~~Av~-------------~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_           8 QDSDSTAAVAVLKRAVE-------------LDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             CCCHHHHHHHHHHHHHH-------------HHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHH
Confidence            34456666666666665             4445666666666666654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=80.98  E-value=6.6  Score=27.44  Aligned_cols=57  Identities=16%  Similarity=0.072  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhcCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 019340          258 SHRQARKWMKRAADC--GHGKAQLEHGLGLFTEGEMMKAVVYLELATRAGETAADHVKN  314 (342)
Q Consensus       258 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~~~  314 (342)
                      ..++-.+.++..++.  -+++.+..+|.+|...|+..++-..+.+|++.|-.+|+....
T Consensus       101 kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~KeAC~~i~  159 (161)
T d1wy6a1         101 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVN  159 (161)
T ss_dssp             CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhc
Confidence            344444555554444  457888999999999999999999999999999999987643