Citrus Sinensis ID: 019366

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDKNIGNDVTVSGEAVS
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccccccccEEcHHHcc
masrthldddddfggdfsanhnsrrsgskrsfgdieddeddifgsrkanskveetapgvATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFqnelfippgtspeprLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDeigrqneegetHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKsvleedkndsvsdknigndvtvsgeavs
masrthldddddfggdfsanhnsrrsgskrsfgdieddeddifgsrkanskveetapgVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFippgtspepRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLknlveekdkkvkeLEENIaavsftanskmGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKhelrqksvleedkndsvsdknigndvtvsgeavs
MASRTHLdddddfggdfSANHNSRRSGSKRsfgdieddeddifgsRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSeemlkeqlekakkkeaaFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRlknlveekdkkvkeleenIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDKNIGNDVTVSGEAVS
**********************************************************VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIP*******RLVINYLQT*******************AAFIVTFAKREQEIAEL***V**********LMQARRLLLDPAIHEEFRRLKNL****************AV*******************************************************FEALYKH*******************************************************************
****THL**DDDFGGDFS*******************************************************************************************************************************************************************DPAIHEEFRR*******************************************************************************************************************************************************
*********DDDFGGDFSAN************GDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDKNIGNDVTVSGEAVS
***************************************DDIFGSRK***********VATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQK****************************
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MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESxxxxxxxxxxxxxxxxxxxxxIQKWHSSFQNELFIPPGTSPEPRLVINYxxxxxxxxxxxxxxxxxxxxxxxxFIVTxxxxxxxxxxxxxxxxxxxxxLKPPLMQARRLLLDPAIHEExxxxxxxxxxxxxxxxxxxxxxxxxxxxANSKMGKALMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEDKNDSVSDKNIGNDVTVSGEAVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query342 2.2.26 [Sep-21-2011]
Q9ZSZ8330 FKBP12-interacting protei yes no 0.812 0.842 0.719 1e-116
Q7SXL7 423 Pre-mRNA-splicing regulat yes no 0.555 0.449 0.352 6e-25
Q9ER69 396 Pre-mRNA-splicing regulat yes no 0.532 0.459 0.357 8e-25
Q15007 396 Pre-mRNA-splicing regulat yes no 0.532 0.459 0.357 8e-25
Q4KLT6 393 Pre-mRNA-splicing regulat N/A no 0.602 0.524 0.330 2e-24
Q6P4K5 393 Pre-mRNA-splicing regulat yes no 0.602 0.524 0.330 3e-24
Q9Y091 536 Pre-mRNA-splicing regulat yes no 0.654 0.417 0.302 9e-22
Q28XY0 560 Pre-mRNA-splicing regulat yes no 0.611 0.373 0.319 2e-20
>sp|Q9ZSZ8|FIP37_ARATH FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1 Back     alignment and function desciption
 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 242/285 (84%), Gaps = 7/285 (2%)

Query: 10  DDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRE 69
           DDDFGGD SA + +R SG++RSFGD+EDDEDDIFGS          APGV TGMILSLR 
Sbjct: 7   DDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSLRG 59

Query: 70  SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEM 129
           SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR +I+Y+Q LKSSE+ 
Sbjct: 60  SLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLIDYIQNLKSSEKS 119

Query: 130 LKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLLLDPAIHEEF 189
           LKEQLE AK+KEA+ IV +AKREQE+AELKSAVRDLK+QLKP  MQARRLLLDPAIHEEF
Sbjct: 120 LKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQARRLLLDPAIHEEF 179

Query: 190 RRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGETH 249
            RLKNLVEEKDKK+KEL++NIAAV+FT  SK GK LMAKC+TLQEEN+EIG Q  EG+ H
Sbjct: 180 SRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEENEEIGHQAAEGKIH 239

Query: 250 QLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLR 294
           +L++KLA+QKS NAEL+SQFE LYKHM+ LT+DVERSNE V++L+
Sbjct: 240 ELAIKLAMQKSQNAELRSQFEGLYKHMEELTNDVERSNETVIILQ 284
Essential protein required during endosperm development and embryogenesis. Involved in endoreduplication, especially in trichomes. May play a role in splicing events.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7SXL7|FL2D_DANRE Pre-mRNA-splicing regulator WTAP OS=Danio rerio GN=wtap PE=2 SV=1 Back     alignment and function description
>sp|Q9ER69|FL2D_MOUSE Pre-mRNA-splicing regulator WTAP OS=Mus musculus GN=Wtap PE=2 SV=3 Back     alignment and function description
>sp|Q15007|FL2D_HUMAN Pre-mRNA-splicing regulator WTAP OS=Homo sapiens GN=WTAP PE=1 SV=2 Back     alignment and function description
>sp|Q4KLT6|FL2D_XENLA Pre-mRNA-splicing regulator WTAP OS=Xenopus laevis GN=wtap PE=2 SV=1 Back     alignment and function description
>sp|Q6P4K5|FL2D_XENTR Pre-mRNA-splicing regulator WTAP OS=Xenopus tropicalis GN=wtap PE=2 SV=1 Back     alignment and function description
>sp|Q9Y091|FL2D_DROME Pre-mRNA-splicing regulator female-lethal(2)D OS=Drosophila melanogaster GN=fl(2)d PE=1 SV=2 Back     alignment and function description
>sp|Q28XY0|FL2D_DROPS Pre-mRNA-splicing regulator female-lethal(2)D OS=Drosophila pseudoobscura pseudoobscura GN=fl(2)d PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
225456942344 PREDICTED: FKBP12-interacting protein of 0.991 0.985 0.772 1e-135
255540573338 FKBP12-interacting protein of 37 kDa, pu 0.964 0.976 0.747 1e-133
356562704340 PREDICTED: FKBP12-interacting protein of 0.985 0.991 0.715 1e-132
449440648343 PREDICTED: FKBP12-interacting protein of 1.0 0.997 0.723 1e-124
356513687339 PREDICTED: FKBP12-interacting protein of 0.921 0.929 0.715 1e-122
297816722336 predicted protein [Arabidopsis lyrata su 0.833 0.848 0.747 1e-122
356507275354 PREDICTED: FKBP12-interacting protein of 0.894 0.864 0.708 1e-115
356516650343 PREDICTED: FKBP12-interacting protein of 0.929 0.927 0.689 1e-115
15232439330 FKBP12 interacting protein 37 [Arabidops 0.812 0.842 0.719 1e-114
357134783355 PREDICTED: FKBP12-interacting protein of 0.967 0.932 0.647 1e-112
>gi|225456942|ref|XP_002281490.1| PREDICTED: FKBP12-interacting protein of 37 kDa [Vitis vinifera] gi|297733733|emb|CBI14980.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/339 (77%), Positives = 300/339 (88%)

Query: 1   MASRTHLDDDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVA 60
           MAS  H+DDDDDFGGDFS  HN RRSG+KR FGD+EDDEDDIF ++K + K+EETAPGVA
Sbjct: 3   MASLPHIDDDDDFGGDFSGGHNGRRSGNKRGFGDLEDDEDDIFSNKKGSFKLEETAPGVA 62

Query: 61  TGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRLVINYL 120
           TGMILSLRESLQNCKDTLATCQ ELEAA+SEIQKWHSSFQN+ FIP GTS EP+LV+NYL
Sbjct: 63  TGMILSLRESLQNCKDTLATCQTELEAARSEIQKWHSSFQNDSFIPAGTSLEPKLVVNYL 122

Query: 121 QTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRLL 180
           QTLKSSEE L+EQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPP MQARRLL
Sbjct: 123 QTLKSSEESLREQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPSMQARRLL 182

Query: 181 LDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIG 240
           LDPAIHEEF RLKNLVEEK+KKVKEL++N+AAV+FT  SKMGK LMAKC+TLQEEN+EIG
Sbjct: 183 LDPAIHEEFTRLKNLVEEKEKKVKELQDNVAAVNFTPQSKMGKMLMAKCRTLQEENEEIG 242

Query: 241 RQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEEN 300
               EG+ H+L++KLALQKS NAEL+SQFE LYKHM+GLT+DVE+SNEMVL+L+E+LEE 
Sbjct: 243 NIASEGKMHELTMKLALQKSQNAELRSQFEGLYKHMEGLTNDVEKSNEMVLILQEQLEEK 302

Query: 301 DHELEKLKHELRQKSVLEEDKNDSVSDKNIGNDVTVSGE 339
           D EL++LK EL QK+ +E + NDS SDK + +D T+  E
Sbjct: 303 DSELKRLKEELEQKTQMEAENNDSASDKKVSDDATIPVE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540573|ref|XP_002511351.1| FKBP12-interacting protein of 37 kDa, putative [Ricinus communis] gi|223550466|gb|EEF51953.1| FKBP12-interacting protein of 37 kDa, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356562704|ref|XP_003549609.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max] Back     alignment and taxonomy information
>gi|449440648|ref|XP_004138096.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356513687|ref|XP_003525542.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max] Back     alignment and taxonomy information
>gi|297816722|ref|XP_002876244.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322082|gb|EFH52503.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356507275|ref|XP_003522394.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max] Back     alignment and taxonomy information
>gi|356516650|ref|XP_003527006.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Glycine max] Back     alignment and taxonomy information
>gi|15232439|ref|NP_190985.1| FKBP12 interacting protein 37 [Arabidopsis thaliana] gi|73919359|sp|Q9ZSZ8.1|FIP37_ARATH RecName: Full=FKBP12-interacting protein of 37 kDa; Short=FIP-37; AltName: Full=Immunophilin-interacting protein AtFIP37 gi|3859944|gb|AAC72922.1| FKBP12 interacting protein [Arabidopsis thaliana] gi|6822063|emb|CAB70991.1| FKBP12 interacting protein (FIP37) [Arabidopsis thaliana] gi|17380968|gb|AAL36296.1| putative FKBP12 interacting protein FIP37 [Arabidopsis thaliana] gi|21281199|gb|AAM44991.1| putative FKBP12 interacting protein FIP37 [Arabidopsis thaliana] gi|332645674|gb|AEE79195.1| FKBP12 interacting protein 37 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357134783|ref|XP_003568995.1| PREDICTED: FKBP12-interacting protein of 37 kDa-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query342
TAIR|locus:2080275330 FIP37 "FKBP12 interacting prot 0.795 0.824 0.610 4.7e-80
FB|FBgn0000662 536 fl(2)d "female lethal d" [Dros 0.742 0.473 0.256 1.1e-20
UNIPROTKB|E1BV94 390 WTAP "Uncharacterized protein" 0.555 0.487 0.319 1.8e-20
RGD|1563824 395 Wtap "Wilms tumor 1 associated 0.526 0.455 0.316 2.6e-20
MGI|MGI:1926395 396 Wtap "Wilms' tumour 1-associat 0.526 0.454 0.316 2.6e-20
UNIPROTKB|Q15007 396 WTAP "Pre-mRNA-splicing regula 0.5 0.431 0.327 3.4e-20
UNIPROTKB|F1SB61 395 WTAP "Uncharacterized protein" 0.494 0.427 0.325 7.4e-20
UNIPROTKB|Q28XY0 560 fl(2)d "Pre-mRNA-splicing regu 0.619 0.378 0.281 1.9e-19
ZFIN|ZDB-GENE-030131-5990 423 wtap "Wilms tumor 1 associated 0.608 0.491 0.293 2.2e-19
TAIR|locus:2080275 FIP37 "FKBP12 interacting protein 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 166/272 (61%), Positives = 197/272 (72%)

Query:    56 APGVATGMILSLRESLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPEPRL 115
             APGV TGMILSLR SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SPEPR 
Sbjct:    46 APGVRTGMILSLRGSLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRF 105

Query:   116 VINYLQTLKSSXXXXXXXXXXXXXXXXXFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQ 175
             +I+Y+Q LKSS                  IV +AKREQE+AELKSAVRDLK+QLKP  MQ
Sbjct:   106 LIDYIQNLKSSEKSLKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQLKPASMQ 165

Query:   176 ARRLLLDPAIHEEFRRXXXXXXXXXXXXXXXXXXIAAVSFTANSKMGKALMAKCKTLQEE 235
             ARRLLLDPAIHEEF R                  IAAV+FT  SK GK LMAKC+TLQEE
Sbjct:   166 ARRLLLDPAIHEEFSRLKNLVEEKDKKIKELQDNIAAVTFTPQSKNGKMLMAKCRTLQEE 225

Query:   236 NDEIGRQNEEGETHQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLRE 295
             N+EIG Q  EG+ H+L++KLA+QKS NAEL+SQFE LYKHM+ LT+DVERSNE V++L+E
Sbjct:   226 NEEIGHQAAEGKIHELAIKLAMQKSQNAELRSQFEGLYKHMEELTNDVERSNETVIILQE 285

Query:   296 KLEENDHELEKLKHELRQKSVLEEDKNDSVSD 327
             KLEE + E+E++K  L   S L  DK D V +
Sbjct:   286 KLEEKEKEIERVKKGLEIVSELVGDKKDEVDE 317
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
FB|FBgn0000662 fl(2)d "female lethal d" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV94 WTAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1563824 Wtap "Wilms tumor 1 associated protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1926395 Wtap "Wilms' tumour 1-associating protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q15007 WTAP "Pre-mRNA-splicing regulator WTAP" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB61 WTAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q28XY0 fl(2)d "Pre-mRNA-splicing regulator female-lethal(2)D" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5990 wtap "Wilms tumor 1 associated protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZSZ8FIP37_ARATHNo assigned EC number0.71920.81280.8424yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016016001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (344 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000538001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (764 aa)
    • • 0.557
GSVIVG00031212001
RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (112 aa)
    • • 0.462

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 42/212 (19%), Positives = 92/212 (43%), Gaps = 16/212 (7%)

Query: 120 LQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQLKPPLMQARRL 179
           L+ L+   E L+E+L + +++         + E+EI ELKS + +L+ +L+         
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE--------- 284

Query: 180 LLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEI 239
                + EE   LK  +EE + ++  L E +         ++ + L    + ++   +E+
Sbjct: 285 ----ELQEELLELKEEIEELEGEISLLRERLEE-LENELEELEERLEELKEKIEALKEEL 339

Query: 240 GRQNEEGETHQLSVKL--ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKL 297
             +    E  +  +      ++ L  +L +  E L +  + L +++      +  +R +L
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 298 EENDHELEKLKHELRQKSVLEEDKNDSVSDKN 329
           EE   E+E L+  L + S   ED  + + +  
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELE 431

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 342
KOG2991330 consensus Splicing regulator [RNA processing and m 100.0
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.14
PF00038312 Filament: Intermediate filament protein; InterPro: 98.01
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.96
PRK02224 880 chromosome segregation protein; Provisional 97.9
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.87
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.54
PRK11637 428 AmiB activator; Provisional 97.38
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.36
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.25
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.07
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.98
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 96.97
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.89
PRK02224 880 chromosome segregation protein; Provisional 96.89
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.78
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.71
PRK03918 880 chromosome segregation protein; Provisional 96.7
PRK11637 428 AmiB activator; Provisional 96.68
PHA02562 562 46 endonuclease subunit; Provisional 96.51
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.48
PF13514 1111 AAA_27: AAA domain 96.46
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.38
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 96.28
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 96.27
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.26
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.22
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 96.14
PF14662193 CCDC155: Coiled-coil region of CCDC155 96.06
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.03
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 95.94
PHA02562 562 46 endonuclease subunit; Provisional 95.92
KOG0963 629 consensus Transcription factor/CCAAT displacement 95.79
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 95.79
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.73
PRK09039 343 hypothetical protein; Validated 95.68
PF13514 1111 AAA_27: AAA domain 95.51
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 95.48
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 95.48
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.25
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.21
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 95.2
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.16
COG4942 420 Membrane-bound metallopeptidase [Cell division and 95.15
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.15
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 95.07
KOG4677 554 consensus Golgi integral membrane protein [Intrace 95.06
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 95.03
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.97
PRK04863 1486 mukB cell division protein MukB; Provisional 94.86
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.83
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.83
PF09787 511 Golgin_A5: Golgin subfamily A member 5; InterPro: 94.73
KOG0933 1174 consensus Structural maintenance of chromosome pro 94.67
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 94.65
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.6
PRK03918 880 chromosome segregation protein; Provisional 94.47
KOG0963 629 consensus Transcription factor/CCAAT displacement 94.43
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 94.42
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 94.38
PF03915424 AIP3: Actin interacting protein 3; InterPro: IPR02 94.33
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 94.3
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 94.19
PRK01156 895 chromosome segregation protein; Provisional 94.19
cd09237356 V_ScBro1_like Protein-interacting V-domain of Sacc 94.17
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 93.83
PF00038312 Filament: Intermediate filament protein; InterPro: 93.82
PRK09039343 hypothetical protein; Validated 93.73
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.66
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.65
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 93.57
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 93.41
PRK10884206 SH3 domain-containing protein; Provisional 93.4
KOG0933 1174 consensus Structural maintenance of chromosome pro 93.38
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 93.36
KOG0018 1141 consensus Structural maintenance of chromosome pro 93.34
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 93.32
PRK04863 1486 mukB cell division protein MukB; Provisional 93.17
TIGR01000 457 bacteriocin_acc bacteriocin secretion accessory pr 93.06
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.95
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 92.92
PF14662193 CCDC155: Coiled-coil region of CCDC155 92.82
PRK11281 1113 hypothetical protein; Provisional 92.75
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 92.74
PRK11281 1113 hypothetical protein; Provisional 92.67
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 92.55
smart00806426 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a 92.36
PF15397258 DUF4618: Domain of unknown function (DUF4618) 92.29
PRK10869 553 recombination and repair protein; Provisional 92.16
PF05911769 DUF869: Plant protein of unknown function (DUF869) 92.11
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 92.11
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 92.03
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 91.96
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 91.83
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 91.82
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 91.57
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 91.39
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 91.35
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 90.81
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 90.7
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.14
PRK04778 569 septation ring formation regulator EzrA; Provision 90.08
PF13851201 GAS: Growth-arrest specific micro-tubule binding 90.07
PF04912388 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit 89.92
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 89.8
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 89.75
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 89.65
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.47
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 89.46
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 89.27
COG2433 652 Uncharacterized conserved protein [Function unknow 89.15
PRK0440675 hypothetical protein; Provisional 89.12
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 89.11
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.06
PF15397258 DUF4618: Domain of unknown function (DUF4618) 89.05
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 88.83
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 88.3
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 88.12
PF0500879 V-SNARE: Vesicle transport v-SNARE protein N-termi 87.83
TIGR02977219 phageshock_pspA phage shock protein A. Members of 87.83
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 87.79
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 87.69
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 87.67
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.66
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 87.54
PF10186 302 Atg14: UV radiation resistance protein and autopha 87.5
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 87.28
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 87.28
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 87.22
PRK0029568 hypothetical protein; Provisional 87.16
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 87.11
PRK10884206 SH3 domain-containing protein; Provisional 86.79
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 86.69
PRK01156 895 chromosome segregation protein; Provisional 86.67
PRK0211973 hypothetical protein; Provisional 86.62
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 86.25
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 86.19
PRK10929 1109 putative mechanosensitive channel protein; Provisi 85.76
PRK10698222 phage shock protein PspA; Provisional 85.41
COG0216 363 PrfA Protein chain release factor A [Translation, 84.95
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 84.95
PF14817 632 HAUS5: HAUS augmin-like complex subunit 5 84.88
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 84.56
PRK0279372 phi X174 lysis protein; Provisional 84.54
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 84.54
PF10186 302 Atg14: UV radiation resistance protein and autopha 84.45
KOG1853 333 consensus LIS1-interacting protein NUDE [Cytoskele 84.44
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 84.34
PRK0073668 hypothetical protein; Provisional 84.03
PRK0073668 hypothetical protein; Provisional 83.83
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.72
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 83.55
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 83.37
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 83.3
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 83.21
PRK0432574 hypothetical protein; Provisional 83.05
KOG1962216 consensus B-cell receptor-associated protein and r 82.99
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 82.97
COG2433652 Uncharacterized conserved protein [Function unknow 82.65
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 82.64
PF06785 401 UPF0242: Uncharacterised protein family (UPF0242); 82.64
PF09787 511 Golgin_A5: Golgin subfamily A member 5; InterPro: 82.64
TIGR02231 525 conserved hypothetical protein. This family consis 82.63
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 82.58
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 82.51
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 82.1
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 81.94
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 81.85
KOG0978 698 consensus E3 ubiquitin ligase involved in syntaxin 81.69
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 81.34
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 81.14
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 80.69
PLN03229 762 acetyl-coenzyme A carboxylase carboxyl transferase 80.58
PF13166 712 AAA_13: AAA domain 80.4
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 80.35
PF09738 302 DUF2051: Double stranded RNA binding protein (DUF2 80.19
>KOG2991 consensus Splicing regulator [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-95  Score=681.83  Aligned_cols=324  Identities=43%  Similarity=0.603  Sum_probs=317.1

Q ss_pred             CCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccccccccccCCCchhhHHHhhHHhhhhchhhhHhhHHHHHHH
Q 019366            9 DDDDFGGDFSANHNSRRSGSKRSFGDIEDDEDDIFGSRKANSKVEETAPGVATGMILSLRESLQNCKDTLATCQLELEAA   88 (342)
Q Consensus         9 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~il~lr~~l~~~~~~~~~~~~~l~~a   88 (342)
                      -|+|||||-+++.+.+.||+.|+|||+.||+||+|+|--       .||||-|||||++|-++-+||+.+++||..+..|
T Consensus         6 ~~~D~~~~~~~a~~t~~~~n~~s~~dl~d~e~d~~~s~~-------~A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a   78 (330)
T KOG2991|consen    6 QDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTT-------VAPGVRTGMILSMTNEEPLPKKVRLSEQDFKVMA   78 (330)
T ss_pred             cccccCCccchhhcccCCcchhhccCccccccccccCCC-------CCCCCccchhhhhccCCCCchhhhhHHHHHHHHH
Confidence            378899999999999999999999999999999999875       5799999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCcCCCCCCCCCChhhhHHHHhhhHhhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 019366           89 KSEIQKWHSSFQNELFIPPGTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKAQ  168 (342)
Q Consensus        89 ~~e~~kW~~~f~~e~~i~a~~~~~p~lv~~~l~~lk~sE~~LkeQl~eakrREnvll~rLA~KEQEiqel~s~l~dlk~~  168 (342)
                      +.+|++|++.|||++|+|++++++|+++++||+.||+||.+|++|+++++|||++||||||+||||+|+|.++|+++|++
T Consensus        79 ~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q  158 (330)
T KOG2991|consen   79 RDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ  158 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCchhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 019366          169 LKPPLMQARRLLLDPAIHEEFRRLKNLVEEKDKKVKELEENIAAVSFTANSKMGKALMAKCKTLQEENDEIGRQNEEGET  248 (342)
Q Consensus       169 ~~pss~qlR~~LlDPAVNlef~rLR~eLee~~~klk~aq~eL~A~kFtPqS~~GKrLMAKCR~LqeENEELGr~lseGri  248 (342)
                      ++|++++||++|+|||||++|.|||++|+++++|++++|++|+||||||+|++||+||||||+|++||+|||+++++|||
T Consensus       159 q~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gri  238 (330)
T KOG2991|consen  159 QQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRI  238 (330)
T ss_pred             hCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCC
Q 019366          249 HQLSVKLALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVLMLREKLEENDHELEKLKHELRQKSVLEEDKNDSVSDK  328 (342)
Q Consensus       249 a~Le~eLAlqK~~~eELrk~~~eL~~~l~eLdeEvE~lqstl~~LQqeL~~~~~~l~~lk~eL~~~~~~~~~~~~~~~~~  328 (342)
                      |+|+++||.||+|++|||+++++||+||++||+||||||+||++||++|+.++.+|++|+..+++.+..+.++.+.+...
T Consensus       239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a~  318 (330)
T KOG2991|consen  239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDAI  318 (330)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCcccCC
Q 019366          329 NIGNDVTVSGE  339 (342)
Q Consensus       329 ~~~~~~~~~~~  339 (342)
                      .++..+++.++
T Consensus       319 ~~~~~~e~~~k  329 (330)
T KOG2991|consen  319 DEDAKEEIAGK  329 (330)
T ss_pred             CCcchhhcccC
Confidence            88888887765

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6 Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>smart00806 AIP3 Actin interacting protein 3 Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>PF14817 HAUS5: HAUS augmin-like complex subunit 5 Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query342
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-15
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-07
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 9e-15
 Identities = 54/372 (14%), Positives = 115/372 (30%), Gaps = 88/372 (23%)

Query: 7   LDDDDDFGGDFSANHNSRRSGSKRSFGDIED---DEDDIFGSRKANSKVEETAPGVATGM 63
           L  +  F          + S   R + +  D   +++ +F   K N    +         
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQ--------P 136

Query: 64  ILSLRESLQN--------------C-KDTLATCQLELEAAKSEIQKWHSSFQNELF-IPP 107
            L LR++L                  K  +A     L+   S   K       ++F +  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSY--KVQCKMDFKIFWLNL 189

Query: 108 GTSPEPRLVINYLQTLKSSEEMLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLKA 167
                P  V+  LQ L         Q++      +         +  I  +++ +R L  
Sbjct: 190 KNCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLK 239

Query: 168 QLKPPLMQARRLL-LD----PAIHEEFR-RLKNLVEEKDKKV---------KELEENIAA 212
                      LL L           F    K L+  + K+V           +  +  +
Sbjct: 240 SKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 213 VSFTANSKMG---KALMAKCKTLQEENDE--------IGRQNEEGET------HQLSVKL 255
           ++ T +       K L  + + L  E           I     +G        H    KL
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 256 --ALQKSLNAELKSQFEALYKHMDGLTDDVERSNEMVL-MLREKLEENDHELEKLKHELR 312
              ++ SLN    +++  ++  +            ++L ++   + ++D  +  + ++L 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSD--VMVVVNKLH 412

Query: 313 QKSVLEEDKNDS 324
           + S++E+   +S
Sbjct: 413 KYSLVEKQPKES 424
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.92
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.42
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.2
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.53
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.42
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.75
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.7
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.25
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.16
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 94.1
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.49
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 93.42
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 93.02
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 92.84
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 92.11
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 91.89
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 91.5
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.31
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 89.25
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 86.78
2no2_A107 HIP-I, huntingtin-interacting protein 1; clathrin 85.57
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 84.5
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 84.36
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 82.05
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 81.12
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 80.88
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 80.3
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 80.28
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 80.28
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.92  E-value=0.0073  Score=50.87  Aligned_cols=11  Identities=18%  Similarity=0.187  Sum_probs=4.0

Q ss_pred             HHhHHHHHHHH
Q 019366          148 FAKREQEIAEL  158 (342)
Q Consensus       148 LA~KEQEiqel  158 (342)
                      +...+.++.++
T Consensus        92 ~~~~~~~~~~~  102 (284)
T 1c1g_A           92 IQLFEEELDRA  102 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query342
d1fxka_107 Prefoldin beta subunit {Archaeon Methanobacterium 83.55
d1gqea_ 362 Polypeptide chain release factor 2 (RF2) {Escheric 80.39
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.55  E-value=4  Score=30.63  Aligned_cols=84  Identities=13%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHhhhhhHHHhhHHH
Q 019366          225 LMAKCKTLQEENDEIGRQNEEGETHQLSVKLALQKSLNAELKSQF---------------EALYKHMDGLTDDVERSNEM  289 (342)
Q Consensus       225 LMAKCR~LqeENEELGr~lseGria~Le~eLAlqK~~~eELrk~~---------------~eL~~~l~eLdeEvE~lqst  289 (342)
                      ++++...|+++...+..     .++.|++++.-.+.-.++|.+.-               ....+++..|.+-+|.+...
T Consensus         6 ~~~~~q~lq~el~~~~~-----q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~   80 (107)
T d1fxka_           6 QLAQFQQLQQQAQAISV-----QKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR   80 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHH
Confidence            34455555555554444     34556665555555555554321               13455666666677777777


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhh
Q 019366          290 VLMLREKLEENDHELEKLKHELRQ  313 (342)
Q Consensus       290 l~~LQqeL~~~~~~l~~lk~eL~~  313 (342)
                      |..|..++..+..++..++..+++
T Consensus        81 i~~l~~q~~~l~~~l~~~~~~l~~  104 (107)
T d1fxka_          81 EKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766654
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure