Citrus Sinensis ID: 019378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEEEccccccHHHHHHHccccHHHHHHHHccEEEEEEEcccHHHHHHHHHcccccccEEEEEEccccccEEEEEcccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEcccccHHcccccHccHHcccccccccHHHHHHHHccccHHHHccccHHHHHHHHHHcccEEEEEEccccHccHHHHcHHHcccHHHHHHHHHcEEEEEEEcccHccHEEEEEEccccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHccccccccccccccccccccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHcccccHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
mfyagsgaryplhepssliafrnfdeemkrpgvweseqgaastadssrdnlaslyrppfhlmfngsfekakdaasVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQvyddtsegkkvctyykldsipvvlvvdpitgqkmrswcgmvqpeslledlvpfmdggpreqhakvshkrprgssttpqqknkdkpdiENEELLQALAASMETIkdasgvsssdtdvastdkdeasatekpaypilpeepkvdrsllcrvgvrlpdgrrmqrnflrtdPIQLLWSYCYsqlegsemkpfrlthaipgatksldydskltfedsgLANAMISVTWE
Flexible Loop (DISEMBL)
mfyagsgaryplhepssLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTyykldsipvvLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQhakvshkrprgssttpqqknkdkpdIENEELLQALAASMETIkdasgvsssdtdvastdkdeasatekpaypilpeepkvdrslLCRVGvrlpdgrrmqrnflrtdpiqLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Low Complexity Region (SEG)
MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKdasgvsssdtdvastdkdEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Disordered region (IsUnstruct)
*****************************************************LYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF*****************************************************************************************RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFE***L**********
Disordered Region (DISOPRED)
*****************************************************LYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ********VQPESLLEDLVPFMDGGPREQHAKVSHK************************************************************KPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Disordered Region (DISEMBL)
********RYPLHEPSSLIAFRNFDEEMKRPG***************RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP***************************DIENEELLQALAASMETI*************************KPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Disordered Region (DISPRO)
*******ARYPL***SSLIAFRNFDEEMK******************RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG************************************************************************************DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
O14048	427	UBX domain-containing pro	yes	no	0.792	0.634	0.296	6e-33
Q5REY7	489	UBX domain-containing pro	yes	no	0.543	0.380	0.362	2e-31
O94888	489	UBX domain-containing pro	yes	no	0.543	0.380	0.362	2e-31
Q6P5G6	467	UBX domain-containing pro	yes	no	0.543	0.398	0.349	2e-30
Q55BU7	503	UBX domain-containing pro	yes	no	0.576	0.391	0.306	9e-23
Q06682	500	UBX domain-containing pro	yes	no	0.809	0.554	0.247	2e-21
Q6GQ69	445	FAS-associated factor 2-B	N/A	no	0.698	0.537	0.185	6e-05

>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 155/304 (50%), Gaps = 33/304 (10%)

Query: 51  LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI 110
           LA L+RPP+ ++ N S ++A+  AS Q +W+LVNLQ++  F   +LNRD W +E+V + I
Sbjct: 145 LAKLFRPPYDIISNLSLDEARIEASSQKRWILVNLQTSTSFECQVLNRDLWKDESVKEVI 204

Query: 111 STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP 170
             +F+F Q+ DD   G +   +Y + S P + ++DP TG++++ W     P   +  L  
Sbjct: 205 RAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSKSFTPADFVIALND 264

Query: 171 FMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASM---ETIKDASGV 227
           F++G   ++ +    K P G+ +   QK  +    E+E++ +A+AAS+    +  ++ G 
Sbjct: 265 FLEGCTLDETS--GRKNPLGAKS---QKPVEAMS-EDEQMHKAIAASLGNGNSTTESQGE 318

Query: 228 SSS---------DTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQ 278
           SSS         D  V   D  E  A E    P            + R+ +R+P+G R  
Sbjct: 319 SSSQQAESHGVADDTVHKIDSAECDAEEPSPGPN-----------VTRIQIRMPNGARFI 367

Query: 279 RNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS 338
           R F  TDP+  +++Y     EG++ +PF LT        SLD     T +++G+ N  + 
Sbjct: 368 RRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLDS----TIKEAGIQNTALQ 423

Query: 339 VTWE 342
             ++
Sbjct: 424 FEFQ 427

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 109/204 (53%), Gaps = 18/204 (8%)

Query: 20  AFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDK 79
            FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+K
Sbjct: 110 GFRDFQTETIR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNK 166

Query: 80  WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 139
           WL++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P
Sbjct: 167 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 226

Query: 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKN 199
            V ++DP TGQK+  W   +   S L+ +  F+            H +  G S++P +K 
Sbjct: 227 YVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG----------EHGQLDGLSSSPPKKC 275

Query: 200 KDKPDI----ENEELLQALAASME 219
                +    E+ +L  A+ AS++
Sbjct: 276 ARSESLIDASEDSQLEAAIRASLQ 299

Pongo abelii (taxid: 9601)

>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 109/204 (53%), Gaps = 18/204 (8%)

Query: 20  AFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDK 79
            FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+K
Sbjct: 110 GFRDFQTETIR---QEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNK 166

Query: 80  WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 139
           WL++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P
Sbjct: 167 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFP 226

Query: 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKN 199
            V ++DP TGQK+  W   +   S L+ +  F+            H +  G S++P +K 
Sbjct: 227 YVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG----------EHGQLDGLSSSPPKKC 275

Query: 200 KDKPDI----ENEELLQALAASME 219
                +    E+ +L  A+ AS++
Sbjct: 276 ARSESLIDASEDSQLEAAIRASLQ 299

Homo sapiens (taxid: 9606)

>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 26/212 (12%)

Query: 12  LHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAK 71
           L EP  L   R  ++E++  G            D     LA L+RPP  LM  GSFE AK
Sbjct: 88  LVEPEPLFGVRQ-EQELRNGGA----------IDKKLTTLADLFRPPIDLMHKGSFETAK 136

Query: 72  DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCT 131
           +   +Q+KWL++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   
Sbjct: 137 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQ 196

Query: 132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGS 191
           +YKL   P V ++DP TGQK+  W   +   S L+ +  F+            H +  G 
Sbjct: 197 FYKLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG----------EHGQLDGL 245

Query: 192 STTPQQKNKDKPDI----ENEELLQALAASME 219
           S++P +K      +    E+ +L  A+ AS++
Sbjct: 246 SSSPPKKCARSESLIDASEDSQLEAAIRASLQ 277

Mus musculus (taxid: 10090)

>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum GN=ubxd7 PE=4 SV=1

 Score =  107 bits (268), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 15/212 (7%)

Query: 20  AFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDK 79
           AFR+F++E    G+ + +      A   + +L+ L++PP  ++  G+F++ K  A  +  
Sbjct: 112 AFRDFEKER---GINQDK------ATEKQKSLSELFKPPLDILTFGTFDEIKKMAEQKKY 162

Query: 80  WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP 139
           ++LVN+Q  +EF    LNRDTW+N+ + + I  NF+FWQV     EGK     Y +   P
Sbjct: 163 FVLVNIQDVQEFDCQKLNRDTWSNKDLKELIGENFVFWQVNSANPEGKWFTQIYPVFKFP 222

Query: 140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPRE-QHAKVSHKRPRGSSTTPQQK 198
            + ++DP TGQK++   G +  E + + LV F+       Q          G+S     K
Sbjct: 223 YIAIIDPRTGQKLQDMTGFIDAEEMAQYLVTFLSTNSFSGQIDPPPSSSSSGAS-----K 277

Query: 199 NKDKPDIENEELLQALAASMETIKDASGVSSS 230
            + K + E+EEL  A+A S++  ++ +  S S
Sbjct: 278 KQKKYNTEDEELELAIALSLKQEQERNSKSGS 309

Dictyostelium discoideum (taxid: 44689)

>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 22/299 (7%)

Query: 46  SSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEA 105
           S    LA L+RPPF +M     + AK  A  + KW+++N+Q +  F    LNRD W++  
Sbjct: 203 SKEQKLALLFRPPFSIMSKLDLDAAKQKARAKQKWIMINIQDSGIFQCQALNRDLWSSRP 262

Query: 106 VSQTISTNFIFWQVYDDTSEGKKVCTYYKL---DSIPVVLVVDPITGQKMRSWCGMVQ-P 161
           V   I  NF+F Q   ++   +    +Y L   D +P + ++DPITG++++ W  +V  P
Sbjct: 263 VKTIIKENFVFLQYQYESRNAQPYLQFYHLNNKDDLPHIAILDPITGERVKQWNRVVPIP 322

Query: 162 ESLLEDLVPFMDG---GPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASM 218
           E  + ++  F+      P+  +  V+   P+   TT  ++ + +  I+      +  ++ 
Sbjct: 323 EQFISEINEFLASFSLDPKVPNPTVNEPLPKVDPTTLTEEQQMELAIKESLNNNSSKSNQ 382

Query: 219 ETIKDASGVSSSDTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQ 278
           E +      S+ +      + D  S  E   +P  P +P     +  R+ +R  DG R+ 
Sbjct: 383 EEVP-----STGEEQKRVQEPDPFSTIEARVHPEPPNKP----GITTRIQIRTGDGSRLV 433

Query: 279 RNF-LRTDPIQLLWSYCYSQLEGSEMKPFRLT-HAIPGATKSLDYDSKLTFEDSGLANA 335
           R F    D ++ ++    ++++G     F L  H        L+    +T  D+GL N+
Sbjct: 434 RRFNALEDTVRTIYEVIKTEMDGFADSRFTLNDHQREDLIDKLN----MTIADAGLKNS 488

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6GQ69|FAF2B_XENLA FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/270 (18%), Positives = 111/270 (41%), Gaps = 31/270 (11%)

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           + + G++ +A + A  + ++LLV L       S    R+T     V+  I++  +FW   
Sbjct: 153 VFYQGTYSQALNDAKQELRFLLVYLHGEDHQDSDDFCRNTLCTSEVTHFINSRMLFWACS 212

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMDGGPR 177
            +  EG +V       + P + ++  +  ++M       G++QP+ L+  L   ++    
Sbjct: 213 SNKPEGFRVSQALHESTYPFLAMI-MLKDRRMTVVGRLEGLIQPQDLINQLTFIIEAN-- 269

Query: 178 EQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTDVAST 237
            Q   VS +  R        + +++  +  ++  +A   S+   ++         D    
Sbjct: 270 -QTYLVSERLER--------EERNQTQVLRQQQDEAYLVSLRADQEKERKKKEKQDQKRR 320

Query: 238 DKDEASATE--------------KPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLR 283
           +++EA   +              +     LP EP  D     ++  ++P+G R++R FL 
Sbjct: 321 EEEEAQRKQMLEERKKRNLEEEKERKSECLPAEPVPDHPDNVKIIFKMPNGTRVERRFLF 380

Query: 284 TDPIQLLWSYCYSQLEGSEMKPFRLTHAIP 313
           T  + ++  + +S  E  E   F++  + P
Sbjct: 381 TQSLSVIHDFLFSLKETPE--KFQIVTSFP 408

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
224111366	444	predicted protein [Populus trichocarpa]	0.982	0.756	0.737	1e-148
255561727	452	UBX domain-containing protein, putative	0.994	0.752	0.742	1e-147
356526695	468	PREDICTED: UBX domain-containing protein	0.997	0.728	0.715	1e-146
359473686	447	PREDICTED: UBX domain-containing protein	1.0	0.765	0.745	1e-145
359473684	456	PREDICTED: UBX domain-containing protein	1.0	0.75	0.745	1e-145
356559122	467	PREDICTED: UBX domain-containing protein	0.997	0.730	0.706	1e-144
356526697	476	PREDICTED: UBX domain-containing protein	0.997	0.716	0.699	1e-144
356559124	456	PREDICTED: UBX domain-containing protein	0.997	0.747	0.698	1e-143
357517375	461	UBX domain-containing protein [Medicago	1.0	0.741	0.684	1e-140
449445306	450	PREDICTED: UBX domain-containing protein	0.985	0.748	0.695	1e-135

>gi|224111366|ref|XP_002315828.1| predicted protein [Populus trichocarpa] gi|222864868|gb|EEF01999.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/350 (73%), Positives = 293/350 (83%), Gaps = 14/350 (4%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S   YP HE SSLIAFRNFDEEMK PGVWES+QG+ ST D+SRDNLASLYRPPFH
Sbjct: 101 MLYGASRTGYPPHEASSLIAFRNFDEEMKHPGVWESDQGSTSTTDNSRDNLASLYRPPFH 160

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMF+GSFEKAK AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAV+QTISTNFIFWQVY
Sbjct: 161 LMFHGSFEKAKGAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVAQTISTNFIFWQVY 220

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDTSEG+KVCTYYKLDSIPVVL++DPITGQKM SW GMVQPESLLEDLVPFMDGGPR+ H
Sbjct: 221 DDTSEGQKVCTYYKLDSIPVVLIIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHH 280

Query: 181 AKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTDVASTDKD 240
             +SHKR RGSS TP +  +     E+EE+L+ALAASME++KD+S ++S+  D+AS DKD
Sbjct: 281 KTLSHKRQRGSSLTPPKSKE-----EDEEVLRALAASMESMKDSSVIASNKKDIASNDKD 335

Query: 241 EAS--------ATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWS 292
           +AS        +T+   YP LPEEP  D+SLLCRVG+RLPDGRR+QRNFL+TDPI+LLWS
Sbjct: 336 DASTAKGEEKCSTKTLTYPPLPEEPSGDKSLLCRVGIRLPDGRRVQRNFLKTDPIRLLWS 395

Query: 293 YCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           +CYSQLE +  K F L  AIPGA K LDYDS +TF +SGLAN+MISV WE
Sbjct: 396 FCYSQLEEAGTKLFCLKEAIPGA-KRLDYDSTMTFGESGLANSMISVAWE 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561727|ref|XP_002521873.1| UBX domain-containing protein, putative [Ricinus communis] gi|223538911|gb|EEF40509.1| UBX domain-containing protein, putative [Ricinus communis]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/353 (74%), Positives = 296/353 (83%), Gaps = 13/353 (3%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           MFY  S   YP HE SSL+AFRNFDEEMKRPGVWES+QGA STAD++RDNLASLYRPP H
Sbjct: 102 MFYRTSRTGYPPHESSSLVAFRNFDEEMKRPGVWESDQGATSTADTARDNLASLYRPPLH 161

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMF+GSFEKAK  ASVQDKWLLVN+QSTKEFSSHMLNRDTWANEAV+QTISTNFIFWQVY
Sbjct: 162 LMFHGSFEKAKGVASVQDKWLLVNIQSTKEFSSHMLNRDTWANEAVAQTISTNFIFWQVY 221

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDTS GKKVCTYYKLDSIPVVLV+DPITGQKMR+W GMVQPE LLEDLVP+MDGGPR+ H
Sbjct: 222 DDTSGGKKVCTYYKLDSIPVVLVIDPITGQKMRAWSGMVQPECLLEDLVPYMDGGPRDHH 281

Query: 181 AKVSHKRPRGSSTTPQQKNKDKPDI----------ENEELLQALAASMETIKDASGVSSS 230
             +SHKRPRGSS    QKNK K  +          E+EE+L+ALAASME +KD++ + S 
Sbjct: 282 VTLSHKRPRGSSQA-LQKNKGKLGLLPAFTNETNEEDEEMLRALAASMEGMKDSNRMPSD 340

Query: 231 DTDVASTDKDEASATEKP-AYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQL 289
             + AS D+DE S + K  AYP LPEEPK +RS+LCRVG+RLPDGRR+QRNFL+TDPIQL
Sbjct: 341 GKEAASADEDEKSCSTKILAYPPLPEEPKGERSILCRVGLRLPDGRRIQRNFLKTDPIQL 400

Query: 290 LWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           LWS+C SQLE +  +PFRLT AIPGA KSLDYDSK+TF +SGLAN+MISV WE
Sbjct: 401 LWSFCTSQLEEAGTRPFRLTQAIPGA-KSLDYDSKVTFGESGLANSMISVAWE 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526695|ref|XP_003531952.1| PREDICTED: UBX domain-containing protein 7-like isoform 1 [Glycine max]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/348 (71%), Positives = 296/348 (85%), Gaps = 7/348 (2%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S A +  HEPSSL+AFRNF+EEM++PGVWESEQGAASTA++SRDNLASLYRPPFH
Sbjct: 122 MLYGASRASHRSHEPSSLVAFRNFEEEMRQPGVWESEQGAASTAETSRDNLASLYRPPFH 181

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMFNG F+KAKDAASVQ+KWLLVN+QSTKEFSSHMLNRDTWANEAVSQTISTN IFWQVY
Sbjct: 182 LMFNGPFDKAKDAASVQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVY 241

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDT+EG+KVCTYY+LDSIPVVLV+DPITGQKMRSW GMVQPESLLE L+ F+D GP++ H
Sbjct: 242 DDTTEGRKVCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHH 301

Query: 181 AKVSHKRPRGSSTTPQQK---NKDKPDIENEELLQALAASMETIKDA---SGVSSSDTDV 234
             +SHKRPRGSS+ P+ K     D+   E+EE+ +ALAASME++K++   +G  + DTDV
Sbjct: 302 ITLSHKRPRGSSSPPKSKALVESDENKEEDEEVQRALAASMESMKESTVMTGRDNIDTDV 361

Query: 235 ASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYC 294
           A   + + +  ++P YP LPEEPKV+R+LLCRVGVRLPDG R+QRNFLRTDPIQLLWS+ 
Sbjct: 362 AVYGQ-QTTLAKRPIYPALPEEPKVERNLLCRVGVRLPDGHRIQRNFLRTDPIQLLWSFI 420

Query: 295 YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
            +QL   E KPFRLTHAIPGA+K LDY+S  TF++SGLAN+MISVTW+
Sbjct: 421 SAQLGEDERKPFRLTHAIPGASKILDYESNSTFQESGLANSMISVTWD 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473686|ref|XP_002274120.2| PREDICTED: UBX domain-containing protein 2-like isoform 1 [Vitis vinifera]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/346 (74%), Positives = 297/346 (85%), Gaps = 4/346 (1%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S   YP HE SSL+AFRNFD+EMKRPG+WESE+GA STA++SRDNLASLYRPPF 
Sbjct: 102 MLYGVSRGGYPSHEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFA 161

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LM +G FEKAK AA+ QDKWLLVNLQST EFSSHMLNRDTWANEAV+QTISTNFIFWQVY
Sbjct: 162 LMHHGPFEKAKVAAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVY 221

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDTSEGKKVCTYYKLDSIPVVLV+DPITGQKMRSWCGM+QPE LLEDL+PFMDGGP++ H
Sbjct: 222 DDTSEGKKVCTYYKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHH 281

Query: 181 AKVSHKRPRGSSTTPQQKNK---DKPDIENEELLQALAASMETIKDASGVSSSDTDVAST 237
             +SHKRPR SS TP QK +   D+ + E+EE+  ALAASM ++KD SG++S + DV +T
Sbjct: 282 VTLSHKRPRESSLTPPQKIQVAADETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTT 341

Query: 238 D-KDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYS 296
           D K+E  + +KP YP LPEEPK DR+LLCRVGVRLPDGRR+QRNFLRTDPIQLLWS+CYS
Sbjct: 342 DKKEEMCSAKKPEYPPLPEEPKGDRNLLCRVGVRLPDGRRIQRNFLRTDPIQLLWSFCYS 401

Query: 297 QLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           QLE    +PF LT AIPGA+++LDYD +LTFE+SGLAN+MISVTWE
Sbjct: 402 QLEEVVSRPFHLTQAIPGASQNLDYDRELTFEESGLANSMISVTWE 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473684|ref|XP_003631347.1| PREDICTED: UBX domain-containing protein 2-like isoform 2 [Vitis vinifera] gi|297738308|emb|CBI27509.3| unnamed protein product [Vitis vinifera]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/346 (74%), Positives = 297/346 (85%), Gaps = 4/346 (1%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S   YP HE SSL+AFRNFD+EMKRPG+WESE+GA STA++SRDNLASLYRPPF 
Sbjct: 111 MLYGVSRGGYPSHEASSLVAFRNFDDEMKRPGIWESEKGATSTAENSRDNLASLYRPPFA 170

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LM +G FEKAK AA+ QDKWLLVNLQST EFSSHMLNRDTWANEAV+QTISTNFIFWQVY
Sbjct: 171 LMHHGPFEKAKVAAAGQDKWLLVNLQSTTEFSSHMLNRDTWANEAVAQTISTNFIFWQVY 230

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDTSEGKKVCTYYKLDSIPVVLV+DPITGQKMRSWCGM+QPE LLEDL+PFMDGGP++ H
Sbjct: 231 DDTSEGKKVCTYYKLDSIPVVLVIDPITGQKMRSWCGMIQPERLLEDLLPFMDGGPKDHH 290

Query: 181 AKVSHKRPRGSSTTPQQKNK---DKPDIENEELLQALAASMETIKDASGVSSSDTDVAST 237
             +SHKRPR SS TP QK +   D+ + E+EE+  ALAASM ++KD SG++S + DV +T
Sbjct: 291 VTLSHKRPRESSLTPPQKIQVAADETNEEDEEVQLALAASMASMKDPSGLTSKEKDVTTT 350

Query: 238 D-KDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYS 296
           D K+E  + +KP YP LPEEPK DR+LLCRVGVRLPDGRR+QRNFLRTDPIQLLWS+CYS
Sbjct: 351 DKKEEMCSAKKPEYPPLPEEPKGDRNLLCRVGVRLPDGRRIQRNFLRTDPIQLLWSFCYS 410

Query: 297 QLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           QLE    +PF LT AIPGA+++LDYD +LTFE+SGLAN+MISVTWE
Sbjct: 411 QLEEVVSRPFHLTQAIPGASQNLDYDRELTFEESGLANSMISVTWE 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559122|ref|XP_003547850.1| PREDICTED: UBX domain-containing protein 7-like isoform 1 [Glycine max]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/348 (70%), Positives = 292/348 (83%), Gaps = 7/348 (2%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S A +  HEPSSL+AFRNF+EEM++PGVWESEQGAASTA++SRDNLASLYRPPFH
Sbjct: 121 MLYGASRAGHRSHEPSSLVAFRNFEEEMRQPGVWESEQGAASTAEASRDNLASLYRPPFH 180

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMFNG+F+KAKDAAS+Q+KWLLVN+QSTKEFSSHMLNRDTWANEAVSQTISTN IFWQVY
Sbjct: 181 LMFNGAFDKAKDAASMQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVY 240

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDT+EG+KVCTYY+LDSIPVVLV+DPITGQKMRSW GMVQPESLLE L+ F+D GP++ H
Sbjct: 241 DDTTEGRKVCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHH 300

Query: 181 AKVSHKRPRGSSTTPQQK---NKDKPDIENEELLQALAASMETIKDAS---GVSSSDTDV 234
             +SHKRPRGSS+ P+ K     D+   E EE+ +ALAASME++K+++   G  + D DV
Sbjct: 301 ITMSHKRPRGSSSPPKSKALVESDENKEEYEEVQRALAASMESMKESTAMAGRDNKDADV 360

Query: 235 ASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYC 294
           A  +  E    ++P YP LPEEPKV+R+LLCRVGVRLPDGRR+QRNFLRTDPIQLLWS+ 
Sbjct: 361 A-VNGQETPMAKRPTYPTLPEEPKVERNLLCRVGVRLPDGRRVQRNFLRTDPIQLLWSFI 419

Query: 295 YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
            +QL   E   FRLTHAIPGA+K LDY+   TF++SGLAN+MISVTW+
Sbjct: 420 SAQLGEDETNSFRLTHAIPGASKILDYEINSTFQESGLANSMISVTWD 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526697|ref|XP_003531953.1| PREDICTED: UBX domain-containing protein 7-like isoform 2 [Glycine max]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/356 (69%), Positives = 295/356 (82%), Gaps = 15/356 (4%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S A +  HEPSSL+AFRNF+EEM++PGVWESEQGAASTA++SRDNLASLYRPPFH
Sbjct: 122 MLYGASRASHRSHEPSSLVAFRNFEEEMRQPGVWESEQGAASTAETSRDNLASLYRPPFH 181

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMFNG F+KAKDAASVQ+KWLLVN+QSTKEFSSHMLNRDTWANEAVSQTISTN IFWQVY
Sbjct: 182 LMFNGPFDKAKDAASVQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVY 241

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDT+EG+KVCTYY+LDSIPVVLV+DPITGQKMRSW GMVQPESLLE L+ F+D GP++ H
Sbjct: 242 DDTTEGRKVCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHH 301

Query: 181 AKVSHKRPRGSSTT-PQQKN----------KDKPDIENEELLQALAASMETIKDA---SG 226
             +SHKRPRGSS   P+ K            D+   E+EE+ +ALAASME++K++   +G
Sbjct: 302 ITLSHKRPRGSSICLPKNKGGLGIKDLSLFTDENKEEDEEVQRALAASMESMKESTVMTG 361

Query: 227 VSSSDTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDP 286
             + DTDVA   + + +  ++P YP LPEEPKV+R+LLCRVGVRLPDG R+QRNFLRTDP
Sbjct: 362 RDNIDTDVAVYGQ-QTTLAKRPIYPALPEEPKVERNLLCRVGVRLPDGHRIQRNFLRTDP 420

Query: 287 IQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           IQLLWS+  +QL   E KPFRLTHAIPGA+K LDY+S  TF++SGLAN+MISVTW+
Sbjct: 421 IQLLWSFISAQLGEDERKPFRLTHAIPGASKILDYESNSTFQESGLANSMISVTWD 476

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559124|ref|XP_003547851.1| PREDICTED: UBX domain-containing protein 7-like isoform 2 [Glycine max]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/352 (69%), Positives = 291/352 (82%), Gaps = 11/352 (3%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y  S A +  HEPSSL+AFRNF+EEM++PGVWESEQGAASTA++SRDNLASLYRPPFH
Sbjct: 106 MLYGASRAGHRSHEPSSLVAFRNFEEEMRQPGVWESEQGAASTAEASRDNLASLYRPPFH 165

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMFNG+F+KAKDAAS+Q+KWLLVN+QSTKEFSSHMLNRDTWANEAVSQTISTN IFWQVY
Sbjct: 166 LMFNGAFDKAKDAASMQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTISTNCIFWQVY 225

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDT+EG+KVCTYY+LDSIPVVLV+DPITGQKMRSW GMVQPESLLE L+ F+D GP++ H
Sbjct: 226 DDTTEGRKVCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHH 285

Query: 181 AKVSHKRPRGSSTTPQQKNKDKPDI-------ENEELLQALAASMETIKDAS---GVSSS 230
             +SHKRPRGSS+ P+ K      I       E EE+ +ALAASME++K+++   G  + 
Sbjct: 286 ITMSHKRPRGSSSPPKSKGMLLLSIYIPGNKEEYEEVQRALAASMESMKESTAMAGRDNK 345

Query: 231 DTDVASTDKDEASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLL 290
           D DVA  +  E    ++P YP LPEEPKV+R+LLCRVGVRLPDGRR+QRNFLRTDPIQLL
Sbjct: 346 DADVA-VNGQETPMAKRPTYPTLPEEPKVERNLLCRVGVRLPDGRRVQRNFLRTDPIQLL 404

Query: 291 WSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           WS+  +QL   E   FRLTHAIPGA+K LDY+   TF++SGLAN+MISVTW+
Sbjct: 405 WSFISAQLGEDETNSFRLTHAIPGASKILDYEINSTFQESGLANSMISVTWD 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517375|ref|XP_003628976.1| UBX domain-containing protein [Medicago truncatula] gi|358345084|ref|XP_003636613.1| UBX domain-containing protein [Medicago truncatula] gi|355502548|gb|AES83751.1| UBX domain-containing protein [Medicago truncatula] gi|355522998|gb|AET03452.1| UBX domain-containing protein [Medicago truncatula]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/346 (68%), Positives = 289/346 (83%), Gaps = 4/346 (1%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           + Y GS   +   EP+SLIAFRNF++E +RPGVWE EQGAASTA+SS+D LASLYRPPFH
Sbjct: 116 LLYGGSRLGHLPQEPNSLIAFRNFEQETRRPGVWEPEQGAASTAESSQDTLASLYRPPFH 175

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMF GSF+KAK AAS+QDKWL+VN+QSTKEFSSHMLNRDTWANEAVSQTI TNFIFWQVY
Sbjct: 176 LMFTGSFDKAKSAASMQDKWLMVNIQSTKEFSSHMLNRDTWANEAVSQTIKTNFIFWQVY 235

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DDT+EGKKVCTYY+LDSIPVVL++DPITGQKMR+W GMVQP+SLLE L+PF D GP++ H
Sbjct: 236 DDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRAWGGMVQPDSLLEGLLPFFDAGPKDHH 295

Query: 181 AKVSHKRPRGSSTTPQQK---NKDKPDIENEELLQALAASMETIKDASGVSSSDTDVAST 237
             +SHKRPRGSS+ P+ K   + D    E+EE+ +ALAAS+E++K++S ++  D   A+ 
Sbjct: 296 NTLSHKRPRGSSSPPKPKATLDSDANKEEDEEVQRALAASLESVKESSEMAEGDDKEANV 355

Query: 238 DKD-EASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYS 296
             + + +A  +PAYP LPEEPK +R+LLCRVGVRLPDGRR+QRNFLR++PIQLLWS+   
Sbjct: 356 AGNVQETALPRPAYPTLPEEPKAERNLLCRVGVRLPDGRRVQRNFLRSEPIQLLWSFIAV 415

Query: 297 QLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
           QL   E KPF+LTHAIPGATK+LDY+S  TFE+SGLA +MISVTW+
Sbjct: 416 QLGEDETKPFKLTHAIPGATKNLDYESNSTFEESGLAYSMISVTWD 461

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445306|ref|XP_004140414.1| PREDICTED: UBX domain-containing protein 7-like [Cucumis sativus]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/342 (69%), Positives = 278/342 (81%), Gaps = 5/342 (1%)

Query: 1   MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFH 60
           M Y G+   Y  +E  S I FRN   E+K   VW+S +GAAST+ +SRDNLASLYRPP+H
Sbjct: 114 MLY-GTTMGYLPNESGSSIGFRNLQNEVKHHDVWQSGEGAASTSGNSRDNLASLYRPPYH 172

Query: 61  LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 120
           LMF GSFEKAK AA VQDKWL+VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY
Sbjct: 173 LMFTGSFEKAKGAACVQDKWLIVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVY 232

Query: 121 DDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQH 180
           DD++EG+KVCTYYKL+SIP VLV+DPITGQKM SW GMVQPE LLEDL+PFMDGGP++ H
Sbjct: 233 DDSTEGQKVCTYYKLESIPAVLVIDPITGQKMHSWFGMVQPERLLEDLLPFMDGGPKDHH 292

Query: 181 AKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDTDVASTDKD 240
             +SHKRPR SS TP  K ++    E+EE+ +ALA S+E +K+A  +SS D D    +K+
Sbjct: 293 VTLSHKRPRESSLTP-PKVREVEYEEDEEVQRALAVSLEGMKEAVKLSSEDKDTKVAEKE 351

Query: 241 EASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG 300
           E      P YP LPEEPK DR LLCR+GVRLP+GRR QRNFLRTDPIQLLWS+C SQLE 
Sbjct: 352 EEKC---PTYPPLPEEPKGDRKLLCRIGVRLPNGRRCQRNFLRTDPIQLLWSFCSSQLED 408

Query: 301 SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
            E KPF+LTHAIPGATK+LDYD+++TFE+SGLAN+MISVTW+
Sbjct: 409 GETKPFKLTHAIPGATKTLDYDTQMTFEESGLANSMISVTWD 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2204497	468	AT1G14570 "AT1G14570" [Arabido	1.0	0.730	0.629	4.1e-113
TAIR|locus:2202872	307	AT1G59550 "AT1G59550" [Arabido	0.514	0.573	0.338	3.2e-43
ZFIN|ZDB-GENE-040704-8	505	ubxn7 "UBX domain protein 7" [	0.491	0.332	0.396	4.9e-36
UNIPROTKB|E1BTX4	492	UBXN7 "Uncharacterized protein	0.540	0.376	0.374	1.9e-35
UNIPROTKB|I3LQY9	476	UBXN7 "Uncharacterized protein	0.540	0.388	0.364	8.1e-35
UNIPROTKB|E2R9U7	489	UBXN7 "Uncharacterized protein	0.540	0.378	0.364	8.4e-35
UNIPROTKB|O94888	489	UBXN7 "UBX domain-containing p	0.540	0.378	0.364	8.4e-35
UNIPROTKB|F1MUA8	474	UBXN7 "Uncharacterized protein	0.540	0.390	0.359	2.1e-34
MGI|MGI:2146388	467	Ubxn7 "UBX domain protein 7" [	0.508	0.372	0.365	7.1e-34
POMBASE|SPAC2C4.15c	427	ubx2 "UBX domain protein Ubx2"	0.865	0.693	0.283	6.7e-33

TAIR|locus:2204497 AT1G14570 "AT1G14570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
 Identities = 226/359 (62%), Positives = 265/359 (73%)

Query:     1 MFYAGSGARYPLHEPSSLIAFRNFDEEMKRPGVWESEQG--------AASTADSS---RD 49
             M+Y          EP+SLIAFRNF EE K PG+WE ++G        +AS ++S+   RD
Sbjct:   110 MYYGAMRVGNSQPEPNSLIAFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRD 169

Query:    50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQT 109
             +LASLYRPPFHLMF GSFE+AK  +S QDKWLLVNLQST EFSSHMLNRDTWAN+AVSQT
Sbjct:   170 SLASLYRPPFHLMFQGSFEQAKTTSSSQDKWLLVNLQSTTEFSSHMLNRDTWANDAVSQT 229

Query:   110 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169
             I  NFIFWQVYDDT+EG+KVCTYYKL+SIPVVLV+DP TGQ+MR W GMV PE+LLEDLV
Sbjct:   230 IKANFIFWQVYDDTTEGRKVCTYYKLESIPVVLVIDPTTGQRMRMWTGMVDPENLLEDLV 289

Query:   170 PFMDGGPREQHAKVSHKRPRGS-STTPQQKNKDK--PDIENEELLQALAASMETIKXXXX 226
             PFMDGGPRE  A +S KRPRGS S TP  K K+    D E EEL +ALAAS+E       
Sbjct:   290 PFMDGGPREHFASLSKKRPRGSFSLTPHSKPKEDVAKDEEEEELQRALAASLEDNNMKES 349

Query:   227 XXXXXXXXXXXXXXEA-SATEKPAYPILPEEPKV-DRSLLCRVGVRLPDGRRMQRNFLRT 284
                           EA ++   P +P LPEEPK  DRSL CRVG+RLP+G+R+QRNFL+T
Sbjct:   350 SDDQSTIIPEEVAVEAVTSAVLPTFPPLPEEPKGGDRSLQCRVGIRLPNGQRLQRNFLKT 409

Query:   285 DPIQLLWSYCYSQLEGSEMK-PFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 342
             D IQLLWS+CYSQLE SE K P +LT AIPG +K+L+Y+S LT E SG+AN+MIS TWE
Sbjct:   410 DTIQLLWSFCYSQLEESERKKPLKLTQAIPGESKTLEYESNLTLEQSGVANSMISATWE 468

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2202872 AT1G59550 "AT1G59550" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 64/189 (33%), Positives = 106/189 (56%)

Query:   157 GMVQPESLLEDLVPFMDGGPREQHAKVSHK-RPRGSSTTPQQKNKDKPDIENEELLQALA 215
             G ++ +  L+DL  ++D  P E  A  +   R +         + D+ D+ N      L+
Sbjct:   129 GEIKAKGFLKDLKKYIDASPHEHIASTARNMRVKAEKIC----HSDQQDMGN------LS 178

Query:   216 ASMETIKXXXXXXXXXXXXXXXXXXEASATEKPAYPILPEEPK--VDRSLLCRVGVRLPD 273
             +    +                      +++   +P+L +EPK   DRS++C + VR P+
Sbjct:   179 SDSVVVSSCGREFDDVVTLSEDEEETCLSSDLFEFPVLTKEPKGDCDRSVVCSISVRFPN 238

Query:   274 GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA 333
             GRR QR FL+++P+QLLWS+CYS ++ S+ K F+L  AIPGA+K+LDY ++ +F+  G+A
Sbjct:   239 GRRKQRKFLKSEPVQLLWSFCYSHMDESDNKAFKLVQAIPGASKTLDYGAEASFDQYGIA 298

Query:   334 NAMISVTWE 342
             N++ISVTWE
Sbjct:   299 NSIISVTWE 307

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040704-8 ubxn7 "UBX domain protein 7" [Danio rerio (taxid:7955)]

 Score = 346 (126.9 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
 Identities = 69/174 (39%), Positives = 102/174 (58%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E    S  D     LA L+RPP  LM  GSFE AKD+  +++KW
Sbjct:   113 FRDFQTETIRQ---EQELRNGSAVDKKLSTLADLFRPPIELMHKGSFETAKDSGQLENKW 169

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+N+AV   I  +FIFWQVY D+ EG++   +YKL+  P 
Sbjct:   170 LMINIQNVQDFACQCLNRDVWSNDAVKTIIREHFIFWQVYHDSEEGQRYIQFYKLNKFPY 229

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM-DGGPRE-QHAKVSHKRPRGSS 192
             + ++DP TGQKM  W   +   S ++ +  F+ + G  + Q ++   KR R  S
Sbjct:   230 ISILDPRTGQKMVEW-NQLDVSSFMDQVTGFLSEHGQLDGQSSQPPAKRARSES 282

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BTX4 UBXN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 76/203 (37%), Positives = 110/203 (54%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+KW
Sbjct:   114 FRDFQTETIRQ---EQELRNGGAVDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKW 170

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P 
Sbjct:   171 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLADFPY 230

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNK 200
             V ++DP TGQK+  W   +   S L+ +  F+      +H ++      G ST P QK  
Sbjct:   231 VSILDPRTGQKLVEW-HQLDVTSFLDQVTGFLS-----EHGQLD-----GHSTNPPQKCS 279

Query:   201 DKPDI----ENEELLQALAASME 219
                 +    E+ +L  A+ AS++
Sbjct:   280 RSESLIDASEDSQLEAAIRASLQ 302

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|I3LQY9 UBXN7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 74/203 (36%), Positives = 111/203 (54%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+KW
Sbjct:    98 FRDFQTETIRQ---EQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKW 154

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P 
Sbjct:   155 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 214

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNK 200
             V ++DP TGQK+  W   +   S L+ +  F+      +H ++      G S++P +K  
Sbjct:   215 VSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG-----EHGQLD-----GLSSSPPKKCA 263

Query:   201 DKPDI----ENEELLQALAASME 219
                 +    E+ +L  A+ AS++
Sbjct:   264 RSESLIDASEDSQLEAAIRASLQ 286

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|E2R9U7 UBXN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 8.4e-35, Sum P(2) = 8.4e-35
 Identities = 74/203 (36%), Positives = 111/203 (54%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+KW
Sbjct:   111 FRDFQTETIRQ---EQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKW 167

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P 
Sbjct:   168 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 227

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNK 200
             V ++DP TGQK+  W   +   S L+ +  F+      +H ++      G S++P +K  
Sbjct:   228 VSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG-----EHGQLD-----GLSSSPPKKCA 276

Query:   201 DKPDI----ENEELLQALAASME 219
                 +    E+ +L  A+ AS++
Sbjct:   277 RSESLIDASEDSQLEAAIRASLQ 299

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|O94888 UBXN7 "UBX domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 8.4e-35, Sum P(2) = 8.4e-35
 Identities = 74/203 (36%), Positives = 111/203 (54%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+KW
Sbjct:   111 FRDFQTETIRQ---EQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKW 167

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P 
Sbjct:   168 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 227

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNK 200
             V ++DP TGQK+  W   +   S L+ +  F+      +H ++      G S++P +K  
Sbjct:   228 VSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG-----EHGQLD-----GLSSSPPKKCA 276

Query:   201 DKPDI----ENEELLQALAASME 219
                 +    E+ +L  A+ AS++
Sbjct:   277 RSESLIDASEDSQLEAAIRASLQ 299

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

UNIPROTKB|F1MUA8 UBXN7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 331 (121.6 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 73/203 (35%), Positives = 111/203 (54%)

Query:    21 FRNFDEEMKRPGVWESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKW 80
             FR+F  E  R    E E       D     LA L+RPP  LM  GSFE AK+   +Q+KW
Sbjct:    96 FRDFQTETIRQ---EQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKW 152

Query:    81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV 140
             L++N+Q+ ++F+   LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P 
Sbjct:   153 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPY 212

Query:   141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNK 200
             V ++DP TG+K+  W   +   S L+ +  F+      +H ++      G S++P +K  
Sbjct:   213 VSILDPRTGKKLVEW-HQLDVSSFLDQVTGFLG-----EHGQLD-----GLSSSPPKKCA 261

Query:   201 DKPDI----ENEELLQALAASME 219
                 +    E+ +L  A+ AS++
Sbjct:   262 RSESLIDASEDSQLEAAIRASLQ 284

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

MGI|MGI:2146388 Ubxn7 "UBX domain protein 7" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 69/189 (36%), Positives = 105/189 (55%)

Query:    35 ESEQGAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSH 94
             E E       D     LA L+RPP  LM  GSFE AK+   +Q+KWL++N+Q+ ++F+  
Sbjct:   100 EQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQ 159

Query:    95 MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154
              LNRD W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  
Sbjct:   160 CLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE 219

Query:   155 WCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDI----ENEEL 210
             W   +   S L+ +  F+      +H ++      G S++P +K      +    E+ +L
Sbjct:   220 W-HQLDVSSFLDQVTGFLG-----EHGQLD-----GLSSSPPKKCARSESLIDASEDSQL 268

Query:   211 LQALAASME 219
               A+ AS++
Sbjct:   269 EAAIRASLQ 277

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

POMBASE|SPAC2C4.15c ubx2 "UBX domain protein Ubx2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 88/310 (28%), Positives = 156/310 (50%)

Query:    36 SEQGAASTADSSR-DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSH 94
             +E  +  +  SSR   LA L+RPP+ ++ N S ++A+  AS Q +W+LVNLQ++  F   
Sbjct:   129 TEDSSEESDSSSRASRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVNLQTSTSFECQ 188

Query:    95 MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS 154
             +LNRD W +E+V + I  +F+F Q+ DD   G +   +Y + S P + ++DP TG++++ 
Sbjct:   189 VLNRDLWKDESVKEVIRAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKE 248

Query:   155 WCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQAL 214
             W     P   +  L  F++G   ++ +    K P G+ +   QK  +    E+E++ +A+
Sbjct:   249 WSKSFTPADFVIALNDFLEGCTLDETS--GRKNPLGAKS---QKPVEAMS-EDEQMHKAI 302

Query:   215 AASMETIKXXXXXXXXXXXXXXXXXXEASAT--EKPAYPILPEEPKVDRSLLCRVGVRLP 272
             AAS+                       A  T  +  +     EEP    ++  R+ +R+P
Sbjct:   303 AASLGNGNSTTESQGESSSQQAESHGVADDTVHKIDSAECDAEEPSPGPNVT-RIQIRMP 361

Query:   273 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL 332
             +G R  R F  TDP+  +++Y     EG++ +PF LT        SLD     T +++G+
Sbjct:   362 NGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLDS----TIKEAGI 417

Query:   333 ANAMISVTWE 342
              N  +   ++
Sbjct:   418 QNTALQFEFQ 427

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0033554 "cellular response to stress" evidence=IEP

GO:0043130 "ubiquitin binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_X000378 hypothetical protein (444 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
cd02958	114	cd02958, UAS, UAS family; UAS is a domain of unkno	1e-53
smart00594	122	smart00594, UAS, UAS domain	2e-44
pfam00789	78	pfam00789, UBX, UBX domain	8e-16
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	5e-09
cd01767	77	cd01767, UBX, UBX (ubiquitin regulatory X) domain	2e-06
smart00166	77	smart00166, UBX, Domain present in ubiquitin-regul	6e-04
cd02991	116	cd02991, UAS_ETEA, UAS family, ETEA subfamily; com	6e-04

>gnl|CDD|239256 cd02958, UAS, UAS family; UAS is a domain of unknown function

 Score =  171 bits (436), Expect = 1e-53
 Identities = 54/113 (47%), Positives = 73/113 (64%)

Query: 62  MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD 121
            F GSFE AK  A  + KWLLV LQS  EF S +LNRD W+NE+V + I  NFIFWQ   
Sbjct: 1   FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDI 60

Query: 122 DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG 174
           D+SEG++    YK+D  P + ++DP TG+ ++ W G + PE LL  L+ F++ 
Sbjct: 61  DSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway. Some members of this family are uncharacterized proteins containing only a UAS domain. Length = 114

>gnl|CDD|214737 smart00594, UAS, UAS domain

 Score =  148 bits (376), Expect = 2e-44
 Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 5/124 (4%)

Query: 53  SLYRPPF-HLMFNGSFEKAKDAASVQ--DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQT 109
            L+RPP+  L + GS E AK  AS Q    WL ++ Q + +  S + NRD   NEAV   
Sbjct: 1   KLFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPD--SQVFNRDVLCNEAVKSL 58

Query: 110 ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV 169
           I  NFIFWQV  DTSEG++V  +YKLDS P V +VDP TGQ++  W G+V+ E   E+L+
Sbjct: 59  IRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELM 118

Query: 170 PFMD 173
            F++
Sbjct: 119 TFLE 122

Length = 122

>gnl|CDD|216120 pfam00789, UBX, UBX domain

 Score = 71.1 bits (175), Expect = 8e-16
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSK 324
           CR+ +RLPDG R+ R F  +DP+Q ++ +  S     +  PF L    P    + D D  
Sbjct: 4   CRLQIRLPDGSRLVRRFNSSDPLQDVYDFVDSNRYDDDE-PFSLNTNFPRRPLTDDDDKT 62

Query: 325 LTFEDSGLANAMISVTW 341
           L  E   L N+ + +  
Sbjct: 63  LK-EAGLLPNSTLVLEP 78

This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module. Length = 78

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 67  FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG 126
            ++A   A  + K LLV+  +    +   L+RD  ++  V + ++  F+  +V   T + 
Sbjct: 6   LDEALAKAREEGKPLLVDFGADWCPTCQALDRDFLSDPRV-KALAEKFVLLRVDVTTRDP 64

Query: 127 KKVCTYYKLDSIPVVLVVDP 146
                      +P V+ +DP
Sbjct: 65  N---LLLDGQGVPHVVFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|176362 cd01767, UBX, UBX (ubiquitin regulatory X) domain

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL-DYDS 323
            ++ +RLPDG+R+++ F  T  +  +    + +  G   +PF L  + P   + L D D 
Sbjct: 3   TKIQIRLPDGKRLEQRFNSTHKLSDV--RDFVESNGPPAEPFTLMTSFP--RRVLTDLDY 58

Query: 324 KLTFEDSGLANAMISVTW 341
           +LT +++GL N ++    
Sbjct: 59  ELTLQEAGLVNEVVFQRL 76

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation. Length = 77

>gnl|CDD|197552 smart00166, UBX, Domain present in ubiquitin-regulatory proteins

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSK 324
           CR+ +RLPDG R+ R F  +D ++ ++ +  S   G    PF L    P  T + D  SK
Sbjct: 2   CRLQIRLPDGSRLVRRFPSSDTLRTVYEFV-SAALGDGNDPFTLNSPFPRRTFTKDDYSK 60

Query: 325 LTFEDSGLANAMISVTW 341
              E + L ++ + +  
Sbjct: 61  KLLELALLPSSTLVLEP 77

Present in FAF1 and Shp1p. Length = 77

>gnl|CDD|239289 cd02991, UAS_ETEA, UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 63  FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD 122
           + G++ +A + A  + ++LLV L       +    R+T     V + I+T  +FW     
Sbjct: 2   YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVA 61

Query: 123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---SWCGMVQPESLLEDLVPFMD 173
             EG +V    +  + P + ++  +   +M       G++QPE L+  L   MD
Sbjct: 62  KPEGYRVSQALRERTYPFLAMIM-LKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	100.0
KOG1363	460	consensus Predicted regulator of the ubiquitin pat	100.0
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	99.95
smart00594	122	UAS UAS domain.	99.95
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.95
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	99.93
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	99.9
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	99.86
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	99.83
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	99.82
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	99.82
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	99.81
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	99.77
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	99.77
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	99.76
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.62
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.56
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.53
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.5
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.4
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	99.34
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	99.32
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	99.27
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.25
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.19
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.17
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.11
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.03
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.78
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.75
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.73
PRK10996	139	thioredoxin 2; Provisional	98.71
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.7
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.7
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.62
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.62
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.57
PHA02278	103	thioredoxin-like protein	98.57
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.56
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.53
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.52
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.5
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.5
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.45
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.43
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.43
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.41
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.41
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	98.41
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.39
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.38
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.36
COG1331	667	Highly conserved protein containing a thioredoxin	98.36
PRK09381	109	trxA thioredoxin; Provisional	98.35
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.34
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.32
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.31
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.28
PTZ00051	98	thioredoxin; Provisional	98.25
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.22
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.21
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.18
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.15
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.14
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.13
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.13
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.12
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.12
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.12
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.11
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.08
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.08
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.07
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.06
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.05
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.04
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.02
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.96
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.95
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.86
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.85
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.79
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.78
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.77
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.77
PTZ00102	477	disulphide isomerase; Provisional	97.76
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.73
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.73
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.71
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.68
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.64
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.63
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	97.61
PTZ00062	204	glutaredoxin; Provisional	97.58
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.57
PTZ00102	477	disulphide isomerase; Provisional	97.57
PLN02309	457	5'-adenylylsulfate reductase	97.57
PF13728	215	TraF: F plasmid transfer operon protein	97.54
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.51
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.47
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.46
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	97.4
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.35
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.35
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.33
PHA02125	75	thioredoxin-like protein	97.29
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	97.29
PTZ00056	199	glutathione peroxidase; Provisional	97.28
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.25
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.14
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.09
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.04
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	97.03
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	97.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	97.0
PLN02412	167	probable glutathione peroxidase	96.95
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	96.95
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	96.91
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	96.84
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	96.83
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	96.83
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	96.77
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	96.74
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.73
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	96.67
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.63
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.62
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	96.59
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	96.57
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.5
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	96.48
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.47
PTZ00044	76	ubiquitin; Provisional	96.44
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	96.4
KOG2244	786	consensus Highly conserved protein containing a th	96.37
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.34
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	96.31
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	96.27
PRK15000	200	peroxidase; Provisional	96.24
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	96.11
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	96.1
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	96.04
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	95.87
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	95.83
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	95.74
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	95.7
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	95.69
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	95.67
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	95.57
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	95.56
PRK13190	202	putative peroxiredoxin; Provisional	95.56
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	95.54
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	95.53
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	95.47
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	95.37
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	95.35
PTZ00253	199	tryparedoxin peroxidase; Provisional	95.31
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	95.27
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	95.15
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	94.88
PTZ00256	183	glutathione peroxidase; Provisional	94.76
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	94.76
PRK10606	183	btuE putative glutathione peroxidase; Provisional	94.38
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	94.15
PTZ00137	261	2-Cys peroxiredoxin; Provisional	94.14
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	94.01
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	93.99
PRK13191	215	putative peroxiredoxin; Provisional	93.92
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	93.87
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	93.84
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	93.83
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	93.78
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	93.77
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	93.6
PRK13189	222	peroxiredoxin; Provisional	93.52
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	93.39
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	93.32
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	93.26
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	93.24
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	92.77
PRK13599	215	putative peroxiredoxin; Provisional	92.36
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	92.25
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	91.72
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	91.29
KOG4277	468	consensus Uncharacterized conserved protein, conta	91.22
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	90.99
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	90.94
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	90.92
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	90.12
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	89.88
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	89.45
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	88.99
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	88.82
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	88.32
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	87.88
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	87.46
PF02809	18	UIM: Ubiquitin interaction motif; InterPro: IPR003	86.0
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	85.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	85.53
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	85.42
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	85.38
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	85.15
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	84.93
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	84.76
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	84.56
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	83.29
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	82.95
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	82.93
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	82.74
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	82.31
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	82.25
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	80.44

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-35  Score=275.11  Aligned_cols=254  Identities=40%  Similarity=0.773  Sum_probs=192.9

Q ss_pred             ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378           43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD  122 (342)
Q Consensus        43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~  122 (342)
                      +..+++.+|.++|+||..|+|.|+++.|+..|.++.+||||                                    +.+
T Consensus        96 ~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV------------------------------------~~D  139 (356)
T KOG1364|consen   96 EHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV------------------------------------LDD  139 (356)
T ss_pred             hhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE------------------------------------eec
Confidence            34566889999999999999999999999999999999999                                    467


Q ss_pred             ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCCCcccccccCCCCCCCCCCccccCCCC
Q 019378          123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDK  202 (342)
Q Consensus       123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  202 (342)
                      +.+|.++..+|++.++|+|+||||+||+.|++|.|.+.+..|+..|..|++.++.++-+.+...|++...      ...-
T Consensus       140 tseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~------e~~~  213 (356)
T KOG1364|consen  140 TSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKT------EPTC  213 (356)
T ss_pred             cCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCCccccccccccccCCCC------Cccc
Confidence            8889999999999999999999999999999999999999999999999999988765544333322110      1111


Q ss_pred             ch-hHHHHHHHHHHHhHHHhhccCCCCCCCccccCcch-hhhhcc-cCCCCCCCCCCCCC--CCCCeeEEEEECCCCceE
Q 019378          203 PD-IENEELLQALAASMETIKDASGVSSSDTDVASTDK-DEASAT-EKPAYPILPEEPKV--DRSLLCRVGVRLPDGRRM  277 (342)
Q Consensus       203 r~-eqde~~e~Al~asle~~~~~~~~~ee~~~~~~~e~-~ee~~~-~~~~~~~l~~EP~~--~~~~~~~i~iRlP~G~r~  277 (342)
                      .. +||.+++.|+..|+-.-.-.   .+.+..-..-++ .|.... ..-..+.+..||..  +.+-+|+|+||||||+|.
T Consensus       214 ~ss~e~~~~elai~~sv~~~~~~---~e~e~~~~s~~ee~e~~~e~~~~~~~~a~~ep~~~~~~svvt~i~vR~pdG~R~  290 (356)
T KOG1364|consen  214 LSSEEDMQMELAIKNSVVNPSSG---TEFEGQGASDEEELETVLEEDLFVFPVATVEPKGDCDRSVVTSIQVRFPDGRRK  290 (356)
T ss_pred             cccccchhhhcccccccccCCCc---ccccCCCCcccchhhccccccccccceeeecCCCCCCccceeEEEEecCCccHH
Confidence            22 36766777877776542211   011110111111 111000 01123334444433  345688899999999999


Q ss_pred             EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCc--eEEEEeC
Q 019378          278 QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA--MISVTWE  342 (342)
Q Consensus       278 ~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~--~l~v~w~  342 (342)
                      +|+|..+++++.||.||.++.+|++...|+|++.||++ +++.++.+.||+++||+|+  .+.++|+
T Consensus       291 qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~-k~l~~~~daT~~eaGL~nS~~~~~~e~e  356 (356)
T KOG1364|consen  291 QRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPAS-KTLDYGADATFKEAGLANSETLLSVEWE  356 (356)
T ss_pred             HHhhccccHHHHHHHHHHHhhcccccccceeeecccch-hhhhccccchHHHhccCccccccccccC
Confidence            99999999999999999999999999999999999976 5888889999999999998  5677774

>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-34  Score=279.78  Aligned_cols=286  Identities=20%  Similarity=0.282  Sum_probs=206.0

Q ss_pred             hHHHHHHhhCCCCcCcccccHHHHHHHHHHc----CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378           47 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQ----DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD  122 (342)
Q Consensus        47 ~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~----~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~  122 (342)
                      +.+.|.++|+.+++.||.|.+..|...|...    .|+|++|+|++...++..||..||||+.|++||+++||+|.+|+.
T Consensus       147 f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~llw~~dvt  226 (460)
T KOG1363|consen  147 FVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENFLLWGWDVT  226 (460)
T ss_pred             HHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhceeeeccccc
Confidence            7899999999999999999999888888444    699999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhCCCC----------------CCcEEEEEeCC-CC-ceEEEEeCCCChHHHHHHHHhhhhcCCCccccccc
Q 019378          123 TSEGKKVCTYYKLD----------------SIPVVLVVDPI-TG-QKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVS  184 (342)
Q Consensus       123 s~eg~~~~~~y~v~----------------~~P~l~ii~p~-tG-~~l~~~~G~~~~~~~l~~L~~~l~~~~~~~~~~~~  184 (342)
                      +++++.+.+.+.+.                .||.+.++... +. +++..++|.++.++.+..+..++..+....     
T Consensus       227 ~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~-----  301 (460)
T KOG1363|consen  227 ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRL-----  301 (460)
T ss_pred             CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHH-----
Confidence            99999998888776                46655554321 11 234455566666666555555555432211     


Q ss_pred             CCCCCCCCCCccccCCCCchhHHHHHHHHHHHhHHHhhccCCCCCCCc---cccCcc-hhhhhcccCCCCCCCCCCCCCC
Q 019378          185 HKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETIKDASGVSSSDT---DVASTD-KDEASATEKPAYPILPEEPKVD  260 (342)
Q Consensus       185 ~~r~~~~~~~~~~~~~~~r~eqde~~e~Al~asle~~~~~~~~~ee~~---~~~~~e-~~ee~~~~~~~~~~l~~EP~~~  260 (342)
                      +.+...+ ..+. ....+.++||.+|++.+++|..+..+.+...++.+   ++++++ ++|....+.+....||+||++.
T Consensus       302 q~~~~~~-~er~-~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a~  379 (460)
T KOG1363|consen  302 QMRRSEQ-DERE-ARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSAS  379 (460)
T ss_pred             hhcccch-hHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCcC
Confidence            1111110 0000 01124456788888888888766111111111111   111111 1122222345567899999778


Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC--ceEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN--AMIS  338 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~--~~l~  338 (342)
                      .+++++|+||+|+|.|..|||.++++++.||+||.++  +..+..|.|.++|||+.+. ......||++.||++  .+|.
T Consensus       380 ~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~--~~~~~e~~~~~~fPr~~~~-~~~~~~sl~~~~l~p~qe~lf  456 (460)
T KOG1363|consen  380 EEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN--GFHPEEYSLNTSFPRRPLG-DYEHSSSLQDIGLTPRQETLF  456 (460)
T ss_pred             cccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc--cCCchhhccccCCCccccc-ccccccccccCCcccccceee
Confidence            8899999999999999999999999999999999997  5678899999999999732 235689999999985  7788


Q ss_pred             EEeC
Q 019378          339 VTWE  342 (342)
Q Consensus       339 v~w~  342 (342)
                      ++|.
T Consensus       457 lE~~  460 (460)
T KOG1363|consen  457 LEEI  460 (460)
T ss_pred             eecC
Confidence            8873

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=99.95  E-value=6.5e-28  Score=198.01  Aligned_cols=114  Identities=23%  Similarity=0.417  Sum_probs=109.1

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ||+|||++|++.||++.|+||||||++.|.+|..||++||+|++|+++|++|||+|++|+.++||+++++.+++.+||++
T Consensus         1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~   80 (116)
T cd02991           1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL   80 (116)
T ss_pred             CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCc--eEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          142 LVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       142 ~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +||+|++++  ++.++.|++++++|+..|..+++.+
T Consensus        81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~  116 (116)
T cd02991          81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN  116 (116)
T ss_pred             EEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            999987664  6899999999999999999998753

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>smart00594 UAS UAS domain

Probab=99.95  E-value=1.1e-27  Score=198.72  Aligned_cols=115  Identities=49%  Similarity=0.756  Sum_probs=107.7

Q ss_pred             hhCCCC-cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378           54 LYRPPF-HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY  132 (342)
Q Consensus        54 ~f~pp~-~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~  132 (342)
                      .|.||. |.||.|+|++|++.|++++|+++||||++||.+|+.|||+||+|++|+++|++|||+|++|+++++|..+++.
T Consensus         2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~   81 (122)
T smart00594        2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQF   81 (122)
T ss_pred             CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHh
Confidence            355555 7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEEeCCCCc----eEEEEeCCCChHHHHHHH
Q 019378          133 YKLDSIPVVLVVDPITGQ----KMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~----~l~~~~G~~~~~~~l~~L  168 (342)
                      |++.+||+++||+|.+|+    ++.++.|.+++++|+..|
T Consensus        82 ~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       82 YKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             cCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            999999999999998764    467889999999999876

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.95  E-value=5.6e-27  Score=191.82  Aligned_cols=113  Identities=48%  Similarity=0.900  Sum_probs=109.9

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ||.|+|++|++.|++++||||||||++||.+|+.|+++||+|++|+++|++|||+|.+|+++++|.+++..|++..+|++
T Consensus         1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~   80 (114)
T cd02958           1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI   80 (114)
T ss_pred             CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +||+|++|+++.++.|.+++++|+..|..+++.
T Consensus        81 ~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~  113 (114)
T cd02958          81 AIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE  113 (114)
T ss_pred             EEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence            999998899999999999999999999998764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=99.93  E-value=1.4e-25  Score=187.73  Aligned_cols=114  Identities=23%  Similarity=0.297  Sum_probs=105.9

Q ss_pred             cccccHHHHHHHH----HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh------------
Q 019378           62 MFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------  125 (342)
Q Consensus        62 ~f~gs~~eA~~~A----k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e------------  125 (342)
                      ||.|+|++|++.|    +++.|+|+||||++.+.+|..||+++|||+.|++||++|||+|++|++.++            
T Consensus         1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~   80 (136)
T cd02990           1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH   80 (136)
T ss_pred             CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence            7999999999999    999999999999999999999999999999999999999999999999987            


Q ss_pred             ----HHHHHHhCCCCCCcEEEEEeCCCC--ceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          126 ----GKKVCTYYKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       126 ----g~~~~~~y~v~~~P~l~ii~p~tG--~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                          +.+.++.+++.+||+++||.+..+  +++.+++|.+++++++..|..+++.+
T Consensus        81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~  136 (136)
T cd02990          81 FGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF  136 (136)
T ss_pred             hhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence                455677889999999999998655  57899999999999999999998753

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=99.90  E-value=2.3e-22  Score=191.01  Aligned_cols=109  Identities=21%  Similarity=0.388  Sum_probs=102.9

Q ss_pred             CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      +||.|++.+|+..||..++.++|||.+++ ..++.|+|-+|.+..|.+.+...||...+...+..+.+|+..|++..+|+
T Consensus         2 lwfkGnipeAIa~aK~kkalfVVyI~gdd-E~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs   80 (506)
T KOG2507|consen    2 LWFKGNIPEAIAEAKGKKALFVVYISGDD-EESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS   80 (506)
T ss_pred             cccccchHHHHHHhhcCCeEEEEEEecCc-hHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence            69999999999999999999999999975 56899999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +++|+- +|..|.++.|++++++|...|..+
T Consensus        81 ~ffIg~-sGtpLevitg~v~adeL~~~i~Kv  110 (506)
T KOG2507|consen   81 IFFIGF-SGTPLEVITGFVTADELASSIEKV  110 (506)
T ss_pred             eeeecC-CCceeEEeeccccHHHHHHHHHHH
Confidence            999995 899999999999999998877655

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=99.86  E-value=2.5e-21  Score=148.08  Aligned_cols=77  Identities=23%  Similarity=0.399  Sum_probs=69.7

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEeC
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE  342 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w~  342 (342)
                      ++|+|+||||||+|++|||+.+++|++||+||.++.++....+|.|+++||++.  +.++ ++||+|+||.|++|+++|.
T Consensus         3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~--l~~~-~~Tl~eagL~~s~v~q~~~   79 (79)
T cd01770           3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKE--LSDE-SLTLKEANLLNAVIVQRLK   79 (79)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcc--cCCC-CCcHHHCCCcCcEEEEEeC
Confidence            579999999999999999999999999999999876554568999999999986  6544 9999999999999999994

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=99.83  E-value=2.5e-20  Score=144.35  Aligned_cols=79  Identities=19%  Similarity=0.381  Sum_probs=68.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCcccc----CCCcCCChhhcCCcCceE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL----DYDSKLTFEDSGLANAMI  337 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l----~~~~~~Tl~e~gL~~~~l  337 (342)
                      +++|+|+||||||+|++|||+.+++|++||+||.+.  +..+.+|+|+++|||+.+.-    ..+.++||+|+||.++.+
T Consensus         2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~   79 (85)
T cd01774           2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEV   79 (85)
T ss_pred             CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccE
Confidence            568999999999999999999999999999999764  55678999999999997321    136789999999999888


Q ss_pred             EEEeC
Q 019378          338 SVTWE  342 (342)
Q Consensus       338 ~v~w~  342 (342)
                      ++++|
T Consensus        80 L~V~d   84 (85)
T cd01774          80 LFVQD   84 (85)
T ss_pred             EEEec
Confidence            88875

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=99.82  E-value=6.3e-20  Score=139.89  Aligned_cols=75  Identities=28%  Similarity=0.558  Sum_probs=68.2

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCC-CcCCChhhcCCcCceEEEEeC
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLANAMISVTWE  342 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~-~~~~Tl~e~gL~~~~l~v~w~  342 (342)
                      +|+|+||||||++++|+|+.+++|++||+||.++  +....+|.|+++|||+.  +.+ +.++||+|+||.|++++|+|.
T Consensus         2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~--~~~~~~f~L~t~~Pr~~--~~~~~~~~TL~e~gL~~s~~~~~~~   77 (77)
T cd01767           2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN--GPPAEPFTLMTSFPRRV--LTDLDYELTLQEAGLVNEVVFQRLK   77 (77)
T ss_pred             cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCEEEEeCCCCcc--CCCCCccCcHHHcCCccceEEEEeC
Confidence            7999999999999999999999999999999987  34478899999999997  443 589999999999999999994

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=99.82  E-value=9.4e-20  Score=139.15  Aligned_cols=75  Identities=24%  Similarity=0.313  Sum_probs=66.4

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v  339 (342)
                      .++|+|+||||||+|++|||..+++|++||.||.++  ++++.+|+|+|+||||++.- .+.++||+|+||.|..+++
T Consensus         3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~--g~~~~~f~L~t~FPRr~~~~-~d~~~TL~e~GL~P~~~Lf   77 (82)
T cd01773           3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK--GYPNERFELLTNFPRRKLSH-LDYDITLQEAGLCPQETVF   77 (82)
T ss_pred             CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCcccCC-cccCCCHHHcCCCCCcEEE
Confidence            568999999999999999999999999999999985  77889999999999998543 4678999999999755444

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=99.81  E-value=1.1e-19  Score=139.25  Aligned_cols=76  Identities=22%  Similarity=0.449  Sum_probs=66.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      +++|+|+||||||+|++|||+.+++|++||+||.++  +++..+|+|+++|||+++. ..+.++||+|+||.+ ++|.|+
T Consensus         2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~t~fPRk~~~-~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLLSSWPRRDLT-QLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecCCCCCCCc-CCCCCCcHHHcCCCCCcEEEEE
Confidence            468999999999999999999999999999999886  7778899999999999843 247789999999996 555553

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=99.77  E-value=1.2e-18  Score=134.35  Aligned_cols=79  Identities=38%  Similarity=0.563  Sum_probs=66.1

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +++.|+|+||||||++++|+|+.+++|++||+||..+........|.|+++|||+.  +..+.++||+|+||. +++|+|
T Consensus         3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~--l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRE--LTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEE--CCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcC--CCccccccHHHhcCCCCeEEEE
Confidence            46799999999999999999999999999999999986443333499999999986  433337999999998 688899


Q ss_pred             Ee
Q 019378          340 TW  341 (342)
Q Consensus       340 ~w  341 (342)
                      +|
T Consensus        81 ~~   82 (82)
T PF00789_consen   81 EK   82 (82)
T ss_dssp             E-
T ss_pred             EC
Confidence            98

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=99.77  E-value=1.9e-18  Score=132.73  Aligned_cols=76  Identities=26%  Similarity=0.494  Sum_probs=65.4

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCC-CcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDY-DSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~-~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +.|+|+||||||+|++|+|+.+++|++||+||.... +....+|+|+++|||+.  +.. +.++||+|+||. +++|+|+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~--l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRT--FTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcC--CccccccCCHHHCCCCCceEEEEe
Confidence            589999999999999999999999999999996643 44567899999999986  433 458999999998 5778887


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      |
T Consensus        80 ~   80 (80)
T smart00166       80 P   80 (80)
T ss_pred             C
Confidence            7

Present in FAF1 and Shp1p.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=99.76  E-value=4.7e-18  Score=130.17  Aligned_cols=76  Identities=17%  Similarity=0.302  Sum_probs=64.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~  340 (342)
                      .+.|+|+||||||++++++|+.+++|++||+||.++  +....+|.|+++|||+.+.. .+.++||+|+||.|+.++++
T Consensus         2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~--~~~~~~f~L~t~fPrk~~~~-~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELN--TGNGGPFTLMTPFPRKVFTE-DDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHc--CCCCCCEEEEeCCCCeECCc-ccccCCHHHCCCCCceEEEE
Confidence            357999999999999999999999999999999986  33458899999999997332 36789999999997665543

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.62  E-value=2.9e-15  Score=115.29  Aligned_cols=81  Identities=20%  Similarity=0.357  Sum_probs=72.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      +..+|++|++.|++++|||||+|+++||..|+.|.+.+|.++.|.++++++||++.+|+++.+.......   ..+|+++
T Consensus         2 W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~   78 (82)
T PF13899_consen    2 WQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFF   78 (82)
T ss_dssp             EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEE
T ss_pred             hhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEE
Confidence            4578999999999999999999999999999999999999999999999999999999988776542222   4599999


Q ss_pred             EEeC
Q 019378          143 VVDP  146 (342)
Q Consensus       143 ii~p  146 (342)
                      |++|
T Consensus        79 ~ldp   82 (82)
T PF13899_consen   79 FLDP   82 (82)
T ss_dssp             EEET
T ss_pred             EeCC
Confidence            9997

...

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.56  E-value=6.8e-15  Score=122.51  Aligned_cols=95  Identities=16%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      +-|..+|++|++.|++++|+|||+|+++||.+|+.|.+.+|.+++|.++++++||...++.+.++.. +. . ....+|+
T Consensus         6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~-~-~g~~vPt   82 (130)
T cd02960           6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS-P-DGQYVPR   82 (130)
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC-c-cCcccCe
Confidence            4456699999999999999999999999999999999999999999999999999888887654311 10 1 2246999


Q ss_pred             EEEEeCCCCceEEEEeCCC
Q 019378          141 VLVVDPITGQKMRSWCGMV  159 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~  159 (342)
                      +++++| +|+++.++.|+.
T Consensus        83 ivFld~-~g~vi~~i~Gy~  100 (130)
T cd02960          83 IMFVDP-SLTVRADITGRY  100 (130)
T ss_pred             EEEECC-CCCCcccccccc
Confidence            999998 689988888853

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.53  E-value=1.3e-13  Score=114.58  Aligned_cols=90  Identities=16%  Similarity=0.222  Sum_probs=77.2

Q ss_pred             HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-H-HH----HhCCCCCCcEE
Q 019378           68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-K-VC----TYYKLDSIPVV  141 (342)
Q Consensus        68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~-~~----~~y~v~~~P~l  141 (342)
                      ++|++.|++++|+|||+|+++||.+|+.|.+.||.+++|.++|+++||++.+|++..... + +.    ..|++.++|++
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence            578999999999999999999999999999999999999999999999999998653211 1 21    25789999999


Q ss_pred             EEEeCCCCceEEEEeCC
Q 019378          142 LVVDPITGQKMRSWCGM  158 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~  158 (342)
                      +|++| +|+.+..-.+.
T Consensus        85 vfl~~-~G~~~~~~~~~  100 (124)
T cd02955          85 VFLTP-DLKPFFGGTYF  100 (124)
T ss_pred             EEECC-CCCEEeeeeec
Confidence            99998 68988766554

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.50  E-value=3.2e-13  Score=111.77  Aligned_cols=109  Identities=21%  Similarity=0.293  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHcC-CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-----------hHHHHHHhC
Q 019378           66 SFEKAKDAASVQD-KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-----------EGKKVCTYY  133 (342)
Q Consensus        66 s~~eA~~~Ak~~~-K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-----------eg~~~~~~y  133 (342)
                      ++-++++.|++++ |++||+|+++||..|+.|...++.++.+...++++|+++.++++..           ....++..|
T Consensus         1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~   80 (125)
T cd02951           1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY   80 (125)
T ss_pred             ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence            3568899999999 9999999999999999999999999999999999999999998754           346788999


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++.++|+++|+++..|+++.++.|..+.+.|...|..+++.
T Consensus        81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            99999999999984379999999999999998888887764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.40  E-value=2.3e-12  Score=103.10  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCCCCCcEEEEEeC
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v~~~P~l~ii~p  146 (342)
                      +++..|.+++|++||+|+.+||..|+.|...++.++.+.+.+++++++..+|++..  ....+++.|++.++|+++|+++
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            56778889999999999999999999999888899999999988999999998643  2567999999999999999997


Q ss_pred             CCCceEEEEeCCCChHHHHHHH
Q 019378          147 ITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       147 ~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      -+|+.+.++.|+.+.++|...|
T Consensus        82 ~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          82 GGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCcccccccCHHHHHHHh
Confidence            4578888999999999987765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=99.34  E-value=1.2e-12  Score=124.72  Aligned_cols=78  Identities=22%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW  341 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w  341 (342)
                      .+++.|||||+||+|++-+|+.++||.+||.||...-++.....|.|+++||.+.  | .|.+.||++|||.|++|+++|
T Consensus       303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~--l-~D~sqTle~AgL~Nsvlvqr~  379 (380)
T KOG2086|consen  303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKP--L-SDDSQTLEEAGLLNSVLVQRL  379 (380)
T ss_pred             CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcc--c-CCcchhHHhccchhhhhhhhc
Confidence            5689999999999999999999999999999999987776677899999999986  6 479999999999999999988


Q ss_pred             C
Q 019378          342 E  342 (342)
Q Consensus       342 ~  342 (342)
                      .
T Consensus       380 ~  380 (380)
T KOG2086|consen  380 A  380 (380)
T ss_pred             C
Confidence            3

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.4e-12  Score=115.48  Aligned_cols=78  Identities=18%  Similarity=0.363  Sum_probs=67.3

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v~  340 (342)
                      ...|+||||||||+++...|+..++|..|..||..+. +.+..+|.|+++|||+.|+- +|..++|+++||.+++ |++.
T Consensus       208 ys~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~-~~~~~P~~f~t~fPR~tf~e-dD~~KpLq~L~L~Psa~lil~  285 (290)
T KOG2689|consen  208 YSQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNR-GDGLDPYSFHTGFPRVTFTE-DDELKPLQELDLVPSAVLILE  285 (290)
T ss_pred             ccceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhc-cCCCCCeeeecCCCceeccc-ccccccHHHhccccchheecc
Confidence            4799999999999999999999999999999999874 33456999999999998654 5889999999999755 5555


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      |
T Consensus       286 ~  286 (290)
T KOG2689|consen  286 P  286 (290)
T ss_pred             c
Confidence            4

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=99.27  E-value=1.7e-11  Score=105.63  Aligned_cols=113  Identities=16%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-HH----H-HhC
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-KV----C-TYY  133 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~~----~-~~y  133 (342)
                      ++=+..-.++|++.|++++|+|||.|..++|..|++|.++++.|++|.++||++||...+|.+..... .+    + ...
T Consensus        19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~   98 (163)
T PF03190_consen   19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMS   98 (163)
T ss_dssp             SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhc
Confidence            44566777899999999999999999999999999999999999999999999999999998763321 11    1 122


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCCCh------HHHHHHHHhhhhc
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMVQP------ESLLEDLVPFMDG  174 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~------~~~l~~L~~~l~~  174 (342)
                      +..++|..++++| .|+.+.. .++..+      ..|+..|..+-+.
T Consensus        99 ~~gGwPl~vfltP-dg~p~~~-~tY~P~~~~~g~~~f~~~l~~i~~~  143 (163)
T PF03190_consen   99 GSGGWPLTVFLTP-DGKPFFG-GTYFPPEDRYGRPGFLQLLERIAEL  143 (163)
T ss_dssp             S---SSEEEEE-T-TS-EEEE-ESS--SS-BTTB--HHHHHHHHHHH
T ss_pred             CCCCCCceEEECC-CCCeeee-eeecCCCCCCCCccHHHHHHHHHHH
Confidence            7889999999999 6887644 234444      3566655555443

; PDB: 3IRA_A.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.25  E-value=6e-12  Score=101.70  Aligned_cols=94  Identities=21%  Similarity=0.320  Sum_probs=78.4

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh------------------HHHHHHhCCC
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE------------------GKKVCTYYKL  135 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e------------------g~~~~~~y~v  135 (342)
                      |+.++|+++|+|+++||..|+.|...++.+.++...+++++.++.+++....                  ...++..|++
T Consensus         1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999999989999998887654                  2357889999


Q ss_pred             CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      ..+|+++++|+ .|+++.++.|++++++|++.|
T Consensus        81 ~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence            99999999995 699999999999999998765

...

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.6e-10  Score=97.48  Aligned_cols=106  Identities=19%  Similarity=0.266  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------HHHHHHh
Q 019378           67 FEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------GKKVCTY  132 (342)
Q Consensus        67 ~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------g~~~~~~  132 (342)
                      .-++.+.|..++|.||+.|.++.|..|..|.+++...+.+++++..||+++.+++....              -..+++.
T Consensus        31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k  110 (182)
T COG2143          31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK  110 (182)
T ss_pred             hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence            45777888999999999999999999999999999999999999999999999886532              2468999


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |+|.++|++++.|. +|+.+..+.|+++|+.|+..|.-+-+
T Consensus       111 f~vrstPtfvFfdk-~Gk~Il~lPGY~ppe~Fl~vlkYVa~  150 (182)
T COG2143         111 FAVRSTPTFVFFDK-TGKTILELPGYMPPEQFLAVLKYVAD  150 (182)
T ss_pred             hccccCceEEEEcC-CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999999996 89999999999999999987654433

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.17  E-value=6.5e-11  Score=97.34  Aligned_cols=103  Identities=19%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCC--CcEEEE
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLV  143 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~i  143 (342)
                      +|++|++.|+.++|++||+|+.+||.+|+.|...+...+.+.. ++.+||.+.++.+...   ....|++.+  +|++++
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~---~~~~~~~~g~~vPt~~f   82 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP---KDEEFSPDGGYIPRILF   82 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc---hhhhcccCCCccceEEE
Confidence            7999999999999999999999999999999988777667655 6778998876654321   234677765  999999


Q ss_pred             EeCCCCceEEE---EeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRS---WCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~---~~G~~~~~~~l~~L~~~l~  173 (342)
                      ++| +|+++.+   ..|+...+.|.+.|..+.+
T Consensus        83 ~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          83 LDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             ECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence            998 6888764   4466677777665555543

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.11  E-value=4e-10  Score=116.16  Aligned_cols=106  Identities=16%  Similarity=0.285  Sum_probs=94.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+++++++.|+.++|+++|+|+.+||.+|+.+.+.++.+++|.+.++ +|++.++|++.  .+...+++.|++..+|++
T Consensus       460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~  538 (571)
T PRK00293        460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTI  538 (571)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEE
Confidence            357899999999999999999999999999999999999999999886 68999999875  356789999999999999


Q ss_pred             EEEeCCCCceE--EEEeCCCChHHHHHHHHhh
Q 019378          142 LVVDPITGQKM--RSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       142 ~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~  171 (342)
                      +++++ +|+.+  .++.|..++++|++.|.+.
T Consensus       539 ~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        539 LFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             EEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence            99997 68764  6889999999998877654

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.03  E-value=3.7e-09  Score=89.84  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~  151 (342)
                      +.|...+|++||+|+++||..|..|...+-   .+.+-....+-++.++++......++..|++..+|+++|+++ +|++
T Consensus        14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~-~G~~   89 (142)
T cd02950          14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR-EGNE   89 (142)
T ss_pred             HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC-CCCE
Confidence            455578999999999999999999864321   233333445556666777666667899999999999999986 7999


Q ss_pred             EEEEeCCCChHHHHHHHHhhhhcC
Q 019378          152 MRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       152 l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +.++.|..+.++|...|...+...
T Consensus        90 v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          90 EGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC
Confidence            999999999999988888888755

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.78  E-value=1e-07  Score=74.74  Aligned_cols=94  Identities=17%  Similarity=0.278  Sum_probs=73.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      +|++.+..  ..++++||+|+++||..|+.+...+   ..+.+.+...+.+..+|.+.  ...+++.|++.++|+++|++
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~   74 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFA   74 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEe
Confidence            35555443  3589999999999999999996542   34555555678888887765  45688999999999999997


Q ss_pred             CCCCceEEEEeCCCChHHHHHHH
Q 019378          146 PITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       146 p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                        .|+.+.++.|..+.+++...|
T Consensus        75 --~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          75 --AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             --CCEEeeeecCCCCHHHHHHHh
Confidence              688888999998888876654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=8.5e-08  Score=81.18  Aligned_cols=105  Identities=22%  Similarity=0.322  Sum_probs=86.5

Q ss_pred             CcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCC
Q 019378           59 FHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKL  135 (342)
Q Consensus        59 ~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v  135 (342)
                      +.++-.-+..+=...-.+...|+||.||.+||.+|+.|.      |-+-++.   .+.|-++.+|.++  ...++..|.|
T Consensus        42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I  113 (150)
T KOG0910|consen   42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDTDE--HPELAEDYEI  113 (150)
T ss_pred             cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEcccc--ccchHhhcce
Confidence            445556677777888889999999999999999999995      3344444   4579999877654  5678999999


Q ss_pred             CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ..+|+++++.  +|+.+.++.|..+.+.+...|..++.
T Consensus       114 ~avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  114 SAVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             eeeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999998  69999999999999999888887764

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.73  E-value=1.4e-07  Score=74.67  Aligned_cols=90  Identities=12%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      .+.+++++++|+|+++||..|..+...+   ..+.+.+.  ..+++..+|.+..+...++..|++.++|++.++.  +|+
T Consensus        12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~--~g~   86 (104)
T cd02997          12 KFLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE--NGK   86 (104)
T ss_pred             HHHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe--CCC
Confidence            3345678999999999999999996553   24444454  5688888888876677889999999999987775  588


Q ss_pred             eEEEEeCCCChHHHHHH
Q 019378          151 KMRSWCGMVQPESLLED  167 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~  167 (342)
                      .+.++.|..+++.+++.
T Consensus        87 ~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          87 FVEKYEGERTAEDIIEF  103 (104)
T ss_pred             eeEEeCCCCCHHHHHhh
Confidence            88899999998888653

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PRK10996 thioredoxin 2; Provisional

Probab=98.71  E-value=2.9e-07  Score=77.90  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      ...+.+++|+++|+|+.+||..|+.|.. +|  .++.+-...++.+..+|.+..  ..++..|++.++|+++|+.  +|+
T Consensus        45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~--~G~  117 (139)
T PRK10996         45 LDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFK--NGQ  117 (139)
T ss_pred             HHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEE--CCE
Confidence            3344567999999999999999999964 34  335555666888888887653  4688999999999998886  699


Q ss_pred             eEEEEeCCCChHHHHHHHHhh
Q 019378          151 KMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ++.++.|..+.+.|.+.|.+.
T Consensus       118 ~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        118 VVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEEEEcCCCCHHHHHHHHHHh
Confidence            999999999988888777654

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.70  E-value=2.4e-07  Score=74.07  Aligned_cols=93  Identities=17%  Similarity=0.342  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCCh-hHHHHHHhCCCCCCcEEE
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-EGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~-eg~~~~~~y~v~~~P~l~  142 (342)
                      .|++++..+  .+|++||+|+++||.+|+.+.      +.+.++.+  .++.+..+|.+.. +...+++.|+|..+|+++
T Consensus         5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~   76 (103)
T cd02985           5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFL   76 (103)
T ss_pred             HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEE
Confidence            456666443  499999999999999999985      34444333  3678888888764 345799999999999988


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      |+.  +|+++.++.| ..+.++...+.
T Consensus        77 ~~~--~G~~v~~~~G-~~~~~l~~~~~  100 (103)
T cd02985          77 FYK--DGEKIHEEEG-IGPDELIGDVL  100 (103)
T ss_pred             EEe--CCeEEEEEeC-CCHHHHHHHHH
Confidence            884  7999999999 55677765543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.70  E-value=3.2e-07  Score=72.34  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=74.4

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      +|.=....+ +.+|+++|+++++||..|..+...+   +++.+-++.++.+..+|++..  ..++..|++.++|+++|+.
T Consensus         2 ~~~~~~~~~-~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~   75 (97)
T cd02949           2 SYALRKLYH-ESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFFK   75 (97)
T ss_pred             chhHHHHHH-hCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEEE
Confidence            343333334 4889999999999999999996543   456666667788888888653  3578899999999999996


Q ss_pred             CCCCceEEEEeCCCChHHHHHHH
Q 019378          146 PITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       146 p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                        .|+++.++.|..+.++|.+.|
T Consensus        76 --~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          76 --DKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             --CCeEEEEEeCCccHHHHHHhh
Confidence              589999999999888877654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.62  E-value=5.7e-07  Score=70.65  Aligned_cols=97  Identities=24%  Similarity=0.367  Sum_probs=76.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++.+..   .+++++|+|+++||..|+.+...+   .++.+....++.++.+|.+  +...+++.|++..+|++++
T Consensus         6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen    6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIF   77 (103)
T ss_dssp             TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEE
T ss_pred             HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEE
Confidence            3456666554   579999999999999999995321   2233334448888888886  4577999999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      +.  .|+.+.++.|..+++.+.+.|.+
T Consensus        78 ~~--~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   78 FK--NGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             EE--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred             EE--CCcEEEEEECCCCHHHHHHHHHc
Confidence            98  58888899999999999877653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.62  E-value=7.6e-07  Score=71.02  Aligned_cols=87  Identities=11%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      +.+.+++++|+|+++||.+|+.+... +  ..+.+-... ...+..++.+.   ..+++.|++..+|+++++.  +|+.+
T Consensus        13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~~Pt~~~~~--~g~~~   84 (102)
T cd02948          13 LLSNKGLTVVDVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEADT---IDTLKRYRGKCEPTFLFYK--NGELV   84 (102)
T ss_pred             HHccCCeEEEEEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCcCcEEEEEE--CCEEE
Confidence            44579999999999999999999643 2  334343443 35567777773   3578999999999998886  79999


Q ss_pred             EEEeCCCChHHHHHHHH
Q 019378          153 RSWCGMVQPESLLEDLV  169 (342)
Q Consensus       153 ~~~~G~~~~~~~l~~L~  169 (342)
                      .++.|. +++.+.+.|.
T Consensus        85 ~~~~G~-~~~~~~~~i~  100 (102)
T cd02948          85 AVIRGA-NAPLLNKTIT  100 (102)
T ss_pred             EEEecC-ChHHHHHHHh
Confidence            999994 7888776664

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.57  E-value=5.4e-07  Score=72.73  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=72.0

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHH-hCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCT-YYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~-~y~v~~~P~l~  142 (342)
                      .+|+ ++..+++.+|++||+|+++||..|+.|... |  .++.+.+.. ++.+..++.+.. ...++. .|++..+|++.
T Consensus         9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~   83 (109)
T cd02993           9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTIL   83 (109)
T ss_pred             HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEE
Confidence            3444 666678889999999999999999999754 4  346666665 599999888763 234564 69999999999


Q ss_pred             EEeCCCCceEEEEeCC-CChHHHHH
Q 019378          143 VVDPITGQKMRSWCGM-VQPESLLE  166 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~-~~~~~~l~  166 (342)
                      ++.+ ++..+..+.|. .+.+.|+.
T Consensus        84 ~f~~-~~~~~~~y~g~~~~~~~l~~  107 (109)
T cd02993          84 FFPK-NSRQPIKYPSEQRDVDSLLM  107 (109)
T ss_pred             EEcC-CCCCceeccCCCCCHHHHHh
Confidence            9986 34456678884 67777754

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PHA02278 thioredoxin-like protein

Probab=98.57  E-value=1e-06  Score=70.83  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChh--HHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE--GKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~e--g~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      +++++++|+|+.+||.+|+.|..      .+.++-.+   ..-++.+|++..+  ...+++.|+|.++|+++++.  +|+
T Consensus        12 ~~~~~vvV~F~A~WCgpCk~m~p------~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk--~G~   83 (103)
T PHA02278         12 RQKKDVIVMITQDNCGKCEILKS------VIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK--DGQ   83 (103)
T ss_pred             hCCCcEEEEEECCCCHHHHhHHH------HHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE--CCE
Confidence            58999999999999999999953      33333322   2335666776432  35589999999999999997  699


Q ss_pred             eEEEEeCCCChHHHHH
Q 019378          151 KMRSWCGMVQPESLLE  166 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~  166 (342)
                      .+.++.|..+++.+.+
T Consensus        84 ~v~~~~G~~~~~~l~~   99 (103)
T PHA02278         84 LVKKYEDQVTPMQLQE   99 (103)
T ss_pred             EEEEEeCCCCHHHHHh
Confidence            9999999888877643

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.56  E-value=6.9e-07  Score=69.89  Aligned_cols=93  Identities=13%  Similarity=0.317  Sum_probs=69.5

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      +|++++..+.  +|+++|+|+.+||..|+.|... |  +++..-+..++.++.+|.+.  ...++..|++.++|+++++.
T Consensus         4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~   76 (97)
T cd02984           4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAFPSVLFLSIEAEE--LPEISEKFEITAVPTFVFFR   76 (97)
T ss_pred             HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhCCceEEEEEcccc--CHHHHHhcCCccccEEEEEE
Confidence            5666666664  7999999999999999999653 3  23333334578888877653  45678999999999999996


Q ss_pred             CCCCceEEEEeCCCChHHHHHHH
Q 019378          146 PITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       146 p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                        .|+.+.++.|. .++.+.+.|
T Consensus        77 --~g~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          77 --NGTIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             --CCEEEEEEeCC-CHHHHHHhh
Confidence              68999999984 566665543

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.53  E-value=1.3e-06  Score=70.85  Aligned_cols=98  Identities=14%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             ccHHHHHHHH--HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           65 GSFEKAKDAA--SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        65 gs~~eA~~~A--k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      -+.++-...+  +..++++||+|+++||..|+.+... |.  ++.+-+.. ++.+..+|.+..  ..++..|++.++|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~   83 (111)
T cd02963           9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPV-WK--EVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAI   83 (111)
T ss_pred             eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHH-HH--HHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEE
Confidence            3444444444  3478999999999999999998653 22  44444443 577788777653  457899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      +++.  .|+.+....|..+.+.+...|.
T Consensus        84 ~i~~--~g~~~~~~~G~~~~~~l~~~i~  109 (111)
T cd02963          84 VGII--NGQVTFYHDSSFTKQHVVDFVR  109 (111)
T ss_pred             EEEE--CCEEEEEecCCCCHHHHHHHHh
Confidence            9996  6888888999888887765544

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.52  E-value=4.3e-07  Score=91.75  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             HHHHHHHcCC--eEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEe
Q 019378           70 AKDAASVQDK--WLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        70 A~~~Ak~~~K--~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      .++.+..++|  |+||+++.+||.+|+.+.+.+++++.|..-+ .++|+.+.|++.  ++-..+.+.|++-+.|++++.+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~  542 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG  542 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence            4555555555  9999999999999999999999988887655 589999999954  5556788999999999999999


Q ss_pred             CCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          146 PITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       146 p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +.+.+.. .+.|.++.+.|++.|..+
T Consensus       543 ~~g~e~~-~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         543 PQGSEPE-ILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCCcCc-CCcceecHHHHHHHHHHh
Confidence            8544443 399999999999988765

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.50  E-value=8.9e-07  Score=70.80  Aligned_cols=99  Identities=15%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++.+.   +.++++||+|+++||..|+.+... |.  ++.+-++..+.+..++.+..+...++..|++.++|++.|
T Consensus         7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~-~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002           7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPE-YA--KAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChH-HH--HHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence            456666664   568999999999999999998643 21  344445556777778888766778999999999999999


Q ss_pred             EeCCC---CceEEEEeCCCChHHHHHHH
Q 019378          144 VDPIT---GQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       144 i~p~t---G~~l~~~~G~~~~~~~l~~L  168 (342)
                      +.+..   +.....+.|..+.+.++..|
T Consensus        81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          81 FRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EeCCCcccccccccccCccCHHHHHHHh
Confidence            98632   12456678888888876543

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01068 thioredoxin thioredoxin

Probab=98.50  E-value=2.8e-06  Score=66.27  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ..+++++|+|+++||..|..+... |  ..+.+-++.++.++.+|.+..  ..+++.|++..+|+++++.  .|+.+...
T Consensus        12 ~~~~~vvi~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~--~g~~~~~~   84 (101)
T TIGR01068        12 SSDKPVLVDFWAPWCGPCKMIAPI-L--EELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK--NGKEVDRS   84 (101)
T ss_pred             hcCCcEEEEEECCCCHHHHHhCHH-H--HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe--CCcEeeee
Confidence            457899999999999999999643 2  344444566788888887654  3578899999999999995  68888888


Q ss_pred             eCCCChHHHHHHHHhh
Q 019378          156 CGMVQPESLLEDLVPF  171 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~  171 (342)
                      .|..+.+.+...|...
T Consensus        85 ~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        85 VGALPKAALKQLINKN  100 (101)
T ss_pred             cCCCCHHHHHHHHHhh
Confidence            8988888887766543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.45  E-value=1.9e-06  Score=66.80  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378           70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      .+..+..++++++|+|++++|..|..+... |  ..+.+.+  +.++.+..++.+.  ...++..|++..+|+++++++ 
T Consensus         7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~-   80 (101)
T cd02961           7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPN-   80 (101)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcC-
Confidence            455566677799999999999999999653 3  2445556  4678888877665  567899999999999999986 


Q ss_pred             CCceEEEEeCCCChHHHHH
Q 019378          148 TGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~  166 (342)
                      +|..+.+..|..+++++++
T Consensus        81 ~~~~~~~~~g~~~~~~i~~   99 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVE   99 (101)
T ss_pred             CCcccccCCCCcCHHHHHh
Confidence            3466777888888888765

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.43  E-value=3.3e-06  Score=66.22  Aligned_cols=95  Identities=13%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+|++++    .++++++|+|+++||..|+.|. ..|  +.+.+.+..  ++.+..+|.  .+...++..|++..+|+++
T Consensus         4 ~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~   74 (102)
T TIGR01126         4 SNFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIK   74 (102)
T ss_pred             hhHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEE
Confidence            3455555    3799999999999999999984 344  345555555  566666555  4456788999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      ++++ ++. +..+.|..+.+.|...|.+
T Consensus        75 ~~~~-~~~-~~~~~g~~~~~~l~~~i~~  100 (102)
T TIGR01126        75 FFPK-GKK-PVDYEGGRDLEAIVEFVNE  100 (102)
T ss_pred             EecC-CCc-ceeecCCCCHHHHHHHHHh
Confidence            9996 334 6788898888887766554

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.43  E-value=1.2e-06  Score=76.63  Aligned_cols=93  Identities=17%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--HH-------------------HHHHh
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--GK-------------------KVCTY  132 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--g~-------------------~~~~~  132 (342)
                      +...+|+++|+|+++||..|+.+.      +.+.++.+.++.++.++.++..  ..                   .++..
T Consensus        59 ~~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~  132 (173)
T TIGR00385        59 AFIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD  132 (173)
T ss_pred             HhcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence            344689999999999999999874      4456666667878877764321  11                   23456


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |++..+|+.++||+ +|+++.++.|..+.+++.+.|..++.
T Consensus       133 ~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       133 LGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             cCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence            78888999999997 69999999999999999998888774

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.41  E-value=2.7e-06  Score=67.58  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++.+.   ..+++++|+|+++||..|+.|.. +|  .++.+-+...+.+..+|.+.  ...+++.|++.++|+++++
T Consensus         9 ~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~   80 (104)
T cd03004           9 EDFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLY   80 (104)
T ss_pred             HHHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence            45665544   45779999999999999999953 22  22333334457777877765  4568899999999999999


Q ss_pred             eCCCCceEEEEeCCCC-hHHHHH
Q 019378          145 DPITGQKMRSWCGMVQ-PESLLE  166 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~-~~~~l~  166 (342)
                      .. +|+.+..+.|..+ .++|..
T Consensus        81 ~~-g~~~~~~~~G~~~~~~~l~~  102 (104)
T cd03004          81 PG-NASKYHSYNGWHRDADSILE  102 (104)
T ss_pred             cC-CCCCceEccCCCCCHHHHHh
Confidence            75 3478888999876 887754

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.41  E-value=6.4e-06  Score=67.31  Aligned_cols=85  Identities=12%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      .+++++|+|+.+||.+|+.|.      |.+.++..+   ...|+.+|++.  ...++..|+|.++|+++++.  +|+.+.
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk--~G~~v~   82 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFF--RNKHMK   82 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEE--CCEEEE
Confidence            689999999999999999995      344444433   35678888875  45789999999999999997  699988


Q ss_pred             EEeCCC----------ChHHHHHHHHhh
Q 019378          154 SWCGMV----------QPESLLEDLVPF  171 (342)
Q Consensus       154 ~~~G~~----------~~~~~l~~L~~~  171 (342)
                      +..|..          +.++||+.+..+
T Consensus        83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02954          83 IDLGTGNNNKINWVFEDKQEFIDIIETI  110 (114)
T ss_pred             EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence            887743          456677655443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=98.41  E-value=3.6e-06  Score=71.40  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      ..|++|+..+  .+|+++|.|+.+||.+|..+.. +|  +++.+-+.+...++.+|++.  ...+++.|++.+.|+++++
T Consensus        12 ~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~f   84 (142)
T PLN00410         12 WAVDQAILAE--EERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFF   84 (142)
T ss_pred             HHHHHHHHhc--CCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEE
Confidence            4566666643  7899999999999999999952 11  22333333346668888885  4579999999977766644


Q ss_pred             eCCCCc-eEEEEeC--------CCChHHHHHHHHhhhhc
Q 019378          145 DPITGQ-KMRSWCG--------MVQPESLLEDLVPFMDG  174 (342)
Q Consensus       145 ~p~tG~-~l~~~~G--------~~~~~~~l~~L~~~l~~  174 (342)
                      -. +|+ .+.+..|        ..+.++|++.+..++..
T Consensus        85 fk-~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~  122 (142)
T PLN00410         85 FR-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG  122 (142)
T ss_pred             EE-CCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence            42 687 7788888        57889999988887753

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4.2e-06  Score=67.56  Aligned_cols=92  Identities=15%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+++.....+...+|+++|+|+++||.+|..+.      |.+.++-.+  +-+|+.+|++.  ...+++.|++...|++
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~------P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf   78 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIA------PKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTF   78 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhh------hHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEE
Confidence            3467777777777789999999999999999984      566666654  58999999988  8889999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHH
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      .++.  .|+.+..+.|. ++..+.+
T Consensus        79 ~f~k--~g~~~~~~vGa-~~~~l~~  100 (106)
T KOG0907|consen   79 VFYK--GGEEVDEVVGA-NKAELEK  100 (106)
T ss_pred             EEEE--CCEEEEEEecC-CHHHHHH
Confidence            9995  69999999884 3444433

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.38  E-value=3.9e-06  Score=68.55  Aligned_cols=96  Identities=15%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHH-HhCCCCCCcEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC-TYYKLDSIPVV  141 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~-~~y~v~~~P~l  141 (342)
                      -..+|+++... .++++++||.|+.+||..|+.|... |  +++.+.+++...+.++|.+...  .++ ..|++.+||++
T Consensus        15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~-~--~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl   88 (113)
T cd03006          15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQE-F--EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVI   88 (113)
T ss_pred             chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEE
Confidence            35677776554 6888999999999999999998542 1  2455555667788888887544  466 58999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHH
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      .+..  +|+......|..+++.++.
T Consensus        89 ~lf~--~g~~~~~y~G~~~~~~i~~  111 (113)
T cd03006          89 HLYY--RSRGPIEYKGPMRAPYMEK  111 (113)
T ss_pred             EEEE--CCccceEEeCCCCHHHHHh
Confidence            9984  5777778889999888864

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.36  E-value=5e-06  Score=62.98  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      .+..+++++||+|++++|..|+.+.+      .+.++.  ..++.+..++.+.  ...++..|++..+|+++++.  .|+
T Consensus         5 ~~~~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~--~g~   74 (93)
T cd02947           5 ELIKSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFK--NGK   74 (93)
T ss_pred             HHHhcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEE--CCE
Confidence            34444499999999999999999864      333333  3678888877765  45678899999999999996  578


Q ss_pred             eEEEEeCCCChHHHHHHH
Q 019378          151 KMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~L  168 (342)
                      .+..+.|..+.+.|...|
T Consensus        75 ~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          75 EVDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEEecCCCHHHHHHHh
Confidence            889999988887776544

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.7e-06  Score=88.81  Aligned_cols=92  Identities=14%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhH----HHHHHhCC
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEG----KKVCTYYK  134 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg----~~~~~~y~  134 (342)
                      |+=+..-=++|...|++++|||||.|--++|.-||+|.++.+.|++|..+||++||..+||-.. |+-    .++++...
T Consensus        25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~t  104 (667)
T COG1331          25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAIT  104 (667)
T ss_pred             CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhc
Confidence            3335566689999999999999999999999999999999999999999999999999987643 221    23444443


Q ss_pred             -CCCCcEEEEEeCCCCceE
Q 019378          135 -LDSIPVVLVVDPITGQKM  152 (342)
Q Consensus       135 -v~~~P~l~ii~p~tG~~l  152 (342)
                       -.++|.-+|+.| .|+..
T Consensus       105 G~GGWPLtVfLTP-d~kPF  122 (667)
T COG1331         105 GQGGWPLTVFLTP-DGKPF  122 (667)
T ss_pred             cCCCCceeEEECC-CCcee
Confidence             367999999999 67765

>PRK09381 trxA thioredoxin; Provisional

Probab=98.35  E-value=7e-06  Score=65.82  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      +|.+.+.   ..+++++|+|+++||..|..+...+ .  ++.+-...++.+..+|.+..  ..++..|++.++|+++|+.
T Consensus        12 ~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~-~--~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~   83 (109)
T PRK09381         12 SFDTDVL---KADGAILVDFWAEWCGPCKMIAPIL-D--EIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLLFK   83 (109)
T ss_pred             hHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHH-H--HHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcCCEEEEEe
Confidence            4554442   4588999999999999999985321 1  23333445677777777654  3467899999999999995


Q ss_pred             CCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          146 PITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       146 p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                        .|+.+.+..|..+.+++...|...
T Consensus        84 --~G~~~~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         84 --NGEVAATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             --CCeEEEEecCCCCHHHHHHHHHHh
Confidence              689898999998888776665544

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.34  E-value=5.2e-06  Score=66.19  Aligned_cols=96  Identities=8%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      +++++...++ +++++||+|+.+||..|+.+.. +|.  ++.+-++.   ++.+..++.+.  ...+++.|++.++|+++
T Consensus         4 ~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~   77 (104)
T cd03000           4 DLDDSFKDVR-KEDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIK   77 (104)
T ss_pred             echhhhhhhc-cCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEE
Confidence            5677777764 4679999999999999999975 343  34444432   47777777654  34678899999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      ++.  +| .+....|..+.+.+...+..
T Consensus        78 l~~--~~-~~~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          78 LLK--GD-LAYNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             EEc--CC-CceeecCCCCHHHHHHHHHh
Confidence            995  34 45668898888887665554

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.32  E-value=3.3e-06  Score=67.30  Aligned_cols=84  Identities=12%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      ...+|++||+|+.+||..|+.+... |.  ++.+... .+.+..+|.+. ....++..|++.++|++.+++.  | .+.+
T Consensus        15 ~~~g~~vlV~F~a~WC~~C~~~~p~-l~--~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g-~~~~   86 (100)
T cd02999          15 FNREDYTAVLFYASWCPFSASFRPH-FN--ALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T-PRVR   86 (100)
T ss_pred             hcCCCEEEEEEECCCCHHHHhHhHH-HH--HHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C-ceeE
Confidence            4789999999999999999998532 21  2223232 46666776652 2346889999999999999984  5 6788


Q ss_pred             EeCCCChHHHHH
Q 019378          155 WCGMVQPESLLE  166 (342)
Q Consensus       155 ~~G~~~~~~~l~  166 (342)
                      +.|..+.+.+.+
T Consensus        87 ~~G~~~~~~l~~   98 (100)
T cd02999          87 YNGTRTLDSLAA   98 (100)
T ss_pred             ecCCCCHHHHHh
Confidence            999988887764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.31  E-value=7.7e-06  Score=65.61  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=66.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh------ccEEEEEeecCChhHHHHHHhCCCCC
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS------TNFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~------~~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      ..+|++++    +.++++||+|+++||..|+.|... |.  ++.+.++      .++.+..+|.+..  ..+++.|++.+
T Consensus         8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~   78 (108)
T cd02996           8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINK   78 (108)
T ss_pred             HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCc
Confidence            34566544    567899999999999999999643 32  2222222      1477778887764  46899999999


Q ss_pred             CcEEEEEeCCCCce-EEEEeCCCChHHHHH
Q 019378          138 IPVVLVVDPITGQK-MRSWCGMVQPESLLE  166 (342)
Q Consensus       138 ~P~l~ii~p~tG~~-l~~~~G~~~~~~~l~  166 (342)
                      ||++.++.  .|+. .....|..+.+.+.+
T Consensus        79 ~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~  106 (108)
T cd02996          79 YPTLKLFR--NGMMMKREYRGQRSVEALAE  106 (108)
T ss_pred             CCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence            99999985  5774 466788888887765

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.28  E-value=8.7e-06  Score=64.41  Aligned_cols=91  Identities=22%  Similarity=0.336  Sum_probs=69.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++.+    .+++++||+|+++||..|+.|.. +|.  ++.+-+..++.+..+|.+..  ..+++.|++..||++.++
T Consensus         9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVF   79 (101)
T ss_pred             hhHHHHh----cCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEE
Confidence            3565544    45699999999999999999863 222  34445566788888888753  568899999999999988


Q ss_pred             eCCCCceEEEEeCCCChHHHHH
Q 019378          145 DPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      .  +|+.+..+.|..+.+.|..
T Consensus        80 ~--~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          80 P--SGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             c--CCCCcccCCCCCCHHHHHh
Confidence            4  6888888899888887653

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PTZ00051 thioredoxin; Provisional

Probab=98.25  E-value=1.6e-05  Score=62.29  Aligned_cols=85  Identities=16%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeC
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p  146 (342)
                      +.+..+.+.+++++|+|+++||..|+.+..      .+.++.++  ++.+..+|.+  +...++..|++.++|+++++. 
T Consensus         9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~-   79 (98)
T PTZ00051          9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK-   79 (98)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence            345556678999999999999999999953      23333332  4667776665  356789999999999988774 


Q ss_pred             CCCceEEEEeCCCChHHH
Q 019378          147 ITGQKMRSWCGMVQPESL  164 (342)
Q Consensus       147 ~tG~~l~~~~G~~~~~~~  164 (342)
                       .|+++.++.|. .++++
T Consensus        80 -~g~~~~~~~G~-~~~~~   95 (98)
T PTZ00051         80 -NGSVVDTLLGA-NDEAL   95 (98)
T ss_pred             -CCeEEEEEeCC-CHHHh
Confidence             78999999995 44443

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.22  E-value=4e-06  Score=68.47  Aligned_cols=93  Identities=18%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhccc----------------CCHHHHHHHhccEEEEEeecCChhHHHHHHhCC
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTW----------------ANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYK  134 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl----------------~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~  134 (342)
                      +..+...+|+++|+|+++||..|+.+...+-                ..+.+..+++++-+-|....+  ....+++.|+
T Consensus        13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~   90 (123)
T cd03011          13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWG   90 (123)
T ss_pred             eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCC
Confidence            4444556799999999999999999843221                123444455443333332222  1245788999


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHH
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLED  167 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~  167 (342)
                      +.++|+++||++ +| ++.++.|..+++.+.+.
T Consensus        91 i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          91 VSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             CCcccEEEEEcC-CC-eEEEEeccCCHHHHHhh
Confidence            999999999997 56 88899999999988764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.21  E-value=1.6e-05  Score=70.41  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-h-HHH-------------------HHHhCC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-E-GKK-------------------VCTYYK  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-e-g~~-------------------~~~~y~  134 (342)
                      ..+|+++|+|+.+||.+|...-.      .+.++-+.++.++.++.++. + ..+                   ++..|+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g  139 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG  139 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence            36999999999999999998743      44555555677777775432 2 222                   234678


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +..+|+.+|||+ +|+++.+..|.++.+++-..|...+..
T Consensus       140 v~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        140 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             CCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence            899999999998 699999999999998887777777753

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.18  E-value=2.7e-05  Score=63.42  Aligned_cols=96  Identities=16%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--cc-EEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TN-FIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~-FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..|++++..|  ++|+++|.|..+||.+|..++      |-+.++-+  .+ .+++.+|++  +...+++.|.+...|+.
T Consensus         3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~md------p~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtf   72 (114)
T cd02986           3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQLD------DILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPST   72 (114)
T ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCChhHHHHH------HHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEE
Confidence            4678888888  899999999999999999985      44444444  25 889998887  56679999999999999


Q ss_pred             EEEeCCCCceEE---------EEeCCC-ChHHHHHHHHhhh
Q 019378          142 LVVDPITGQKMR---------SWCGMV-QPESLLEDLVPFM  172 (342)
Q Consensus       142 ~ii~p~tG~~l~---------~~~G~~-~~~~~l~~L~~~l  172 (342)
                      +++-  +|+-+.         .|.|.+ +.++||+.+..+.
T Consensus        73 vffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y  111 (114)
T cd02986          73 IFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  111 (114)
T ss_pred             EEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence            9886  455332         233333 5688888776543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.15  E-value=1.4e-05  Score=64.88  Aligned_cols=82  Identities=15%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ..|.+.+..+. .+++++|+|+++||..|+.|..      .+.++..+  +..|..+|++..   .+++.|++.++|+++
T Consensus        12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~------~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~   81 (113)
T cd02957          12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDS------HLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLL   81 (113)
T ss_pred             HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHH------HHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEE
Confidence            34555553221 2589999999999999999853      33344332  456677777643   889999999999999


Q ss_pred             EEeCCCCceEEEEeCC
Q 019378          143 VVDPITGQKMRSWCGM  158 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~  158 (342)
                      ++.  .|+.+.++.|.
T Consensus        82 ~f~--~G~~v~~~~G~   95 (113)
T cd02957          82 VYK--NGELIDNIVGF   95 (113)
T ss_pred             EEE--CCEEEEEEecH
Confidence            987  69999999883

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.14  E-value=3.2e-05  Score=60.74  Aligned_cols=90  Identities=16%  Similarity=0.305  Sum_probs=65.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      .+|++++    ..+ ++||+|+++||..|+.+... |.  ++.+....   ++.+..+|.+...  .+++.|++.++|++
T Consensus         8 ~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~   77 (102)
T cd03005           8 DNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPT-WE--QLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTL   77 (102)
T ss_pred             HHHHHHh----hcC-CEEEEEECCCCHHHHHhCHH-HH--HHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEE
Confidence            3455555    334 59999999999999998542 22  23333333   6888888876533  67889999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHH
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      +++.  .|..+.+..|..+.+.+..
T Consensus        78 ~~~~--~g~~~~~~~G~~~~~~l~~  100 (102)
T cd03005          78 LLFK--DGEKVDKYKGTRDLDSLKE  100 (102)
T ss_pred             EEEe--CCCeeeEeeCCCCHHHHHh
Confidence            9995  5777788999888777644

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.13  E-value=2.1e-05  Score=67.70  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             hHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh
Q 019378           47 SRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE  125 (342)
Q Consensus        47 ~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e  125 (342)
                      .-+.+..+..||- .....+-+++.-......++.+|+|..+||.+|+...      |.+.++-++ ++.+..++++...
T Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~   92 (153)
T TIGR02738        20 TLDEITNLWAPPQ-GLTAATDNAPQGRHANQDDYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQG   92 (153)
T ss_pred             cHHHHhhcccccc-cccccccccCcchhhhcCCCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCc
Confidence            3556777776653 2233333334444455667789999999999999973      555555544 3555555555321


Q ss_pred             -----------HHHHHHhC---CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          126 -----------GKKVCTYY---KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       126 -----------g~~~~~~y---~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                                 +......|   ++..+|+.+|||+.+|.+..+..|.++.+++...|...
T Consensus        93 ~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738        93 LTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             ccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence                       22223455   78999999999985444566789999999887766654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.13  E-value=3.1e-05  Score=61.10  Aligned_cols=92  Identities=11%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ..+|++++     +++| ||+|+++||..|+.+... |.  ++.+.... ++.+..+|.+..  ..++..|++.++|+++
T Consensus         8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~   76 (101)
T cd02994           8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQE--PGLSGRFFVTALPTIY   76 (101)
T ss_pred             hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCC--HhHHHHcCCcccCEEE
Confidence            45676654     3455 699999999999998643 22  23333332 578888887653  3578999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      ++.  .|+ +....|..+.+.+.+.|.
T Consensus        77 ~~~--~g~-~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          77 HAK--DGV-FRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             EeC--CCC-EEEecCCCCHHHHHHHHh
Confidence            873  577 467889888888876553

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR02740 TraF-like TraF-like protein

Probab=98.12  E-value=3.9e-05  Score=72.13  Aligned_cols=110  Identities=13%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CCcCcccccHHHHHH------HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh-----
Q 019378           58 PFHLMFNGSFEKAKD------AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE-----  125 (342)
Q Consensus        58 p~~~~f~gs~~eA~~------~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e-----  125 (342)
                      |++-+-...+.++..      .+.-.+|+.||+|+.+||..|+.+.      +.+..+-++ ++.+..++++...     
T Consensus       140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~------P~L~~la~~yg~~Vi~VsvD~~~~~~fp  213 (271)
T TIGR02740       140 PVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQA------PILQAFEDRYGIEVLPVSVDGGPLPGFP  213 (271)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHHh------HHHHHHHHHcCcEEEEEeCCCCccccCC
Confidence            444444444544433      2344589999999999999999974      555666554 4666666665421     


Q ss_pred             ----HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          126 ----GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       126 ----g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                          ...+++.|+|..+|+++|+++.+|.+.....|.++.++|.+.+.....
T Consensus       214 ~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       214 NARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             cccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence                134688999999999999998656655566799999999888876654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.12  E-value=2.1e-05  Score=61.90  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      +|++.+.   ..++++||+|+++||..|+.|...+   ..+.+.+++  ++.+..+|.+..   .++..+++.++|++.+
T Consensus         9 ~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           9 NFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILF   79 (104)
T ss_pred             hhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEE
Confidence            4444443   4568999999999999999996543   555566654  688988888754   4677888999999999


Q ss_pred             EeCCCCc--eEEEEeCCCChHHHHH
Q 019378          144 VDPITGQ--KMRSWCGMVQPESLLE  166 (342)
Q Consensus       144 i~p~tG~--~l~~~~G~~~~~~~l~  166 (342)
                      +.+  |.  ......|..+...|+.
T Consensus        80 ~~~--~~~~~~~~~~g~~~~~~l~~  102 (104)
T cd02995          80 FPA--GDKSNPIKYEGDRTLEDLIK  102 (104)
T ss_pred             EcC--CCcCCceEccCCcCHHHHHh
Confidence            974  44  4566788888887765

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.12  E-value=5e-05  Score=62.81  Aligned_cols=93  Identities=8%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------hHHHHHHhCCC
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKL  135 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------eg~~~~~~y~v  135 (342)
                      +.++ +...-+.++..+|||+.+||++|+.|.      |.+.++.++ +.-++.+|++..         +-..+...|++
T Consensus        12 t~~~-~~~~i~~~~~~iv~f~~~~Cp~C~~~~------P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295        12 TVVR-ALEALDKKETATFFIGRKTCPYCRKFS------GTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             CHHH-HHHHHHcCCcEEEEEECCCChhHHHHh------HHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            3444 333446789999999999999999984      666777764 344666666532         33456677665


Q ss_pred             ----CCCcEEEEEeCCCCceEEEEeC-CCChHHHHHH
Q 019378          136 ----DSIPVVLVVDPITGQKMRSWCG-MVQPESLLED  167 (342)
Q Consensus       136 ----~~~P~l~ii~p~tG~~l~~~~G-~~~~~~~l~~  167 (342)
                          .+.|+++++.  +|+.+.++.| ..+.++|...
T Consensus        85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~~~l~~~  119 (122)
T TIGR01295        85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTAQELQDI  119 (122)
T ss_pred             cccCCCCCEEEEEe--CCeEEEEEeCCCCCHHHHHHH
Confidence                4599999997  6999999989 4556666543

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.11  E-value=1.7e-05  Score=62.46  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+|++.   ....+|+++|+++++||..|..|... |  ..+.+.+.  .++.+..+|.+.. ...+++.|++.++|+++
T Consensus         8 ~~~~~~---~~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~   80 (105)
T cd02998           8 SNFDKV---VGDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLK   80 (105)
T ss_pred             hcHHHH---hcCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEE
Confidence            345553   34457899999999999999998432 1  22333333  3688888877653 45788999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHH
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      ++.+ +|.....+.|..+.+.+..
T Consensus        81 ~~~~-~~~~~~~~~g~~~~~~l~~  103 (105)
T cd02998          81 FFPK-GSTEPVKYEGGRDLEDLVK  103 (105)
T ss_pred             EEeC-CCCCccccCCccCHHHHHh
Confidence            9986 4455667788888877754

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.08  E-value=5.5e-05  Score=62.48  Aligned_cols=97  Identities=15%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcc--hhhhhhcccCC----HHHHHHH-hccEEEEEeecCChhHHHHHHhCCCC
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFS--SHMLNRDTWAN----EAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLD  136 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~--~~~f~rdvl~~----~~V~~~i-~~~FV~w~~~~~s~eg~~~~~~y~v~  136 (342)
                      ..+|++.+   ++..++++|++...||.+  |+.+    .-.    +.-.+++ .....+..+|++.  ...+++.|+|.
T Consensus        16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~----~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~   86 (120)
T cd03065          16 EKNYKQVL---KKYDVLCLLYHEPVESDKEAQKQF----QMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLD   86 (120)
T ss_pred             hhhHHHHH---HhCCceEEEEECCCcCChhhChhh----cchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCc
Confidence            35566554   456779999999999977  8732    123    2223344 3468899888875  47899999999


Q ss_pred             CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++|+++++.  +|+.+. +.|..+.+.+...|...+
T Consensus        87 ~iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          87 EEDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            999999997  689887 999999999988887654

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.08  E-value=4.2e-05  Score=69.90  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             cccccHHHHHHHHH-HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           62 MFNGSFEKAKDAAS-VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak-~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      +-..+|++.+.... ..++++||+|+.+||..|+.+... |  +++.+-++..+.+..+|.+  +...+++.|++.+||+
T Consensus        35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PT  109 (224)
T PTZ00443         35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPT  109 (224)
T ss_pred             CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCE
Confidence            34668888776553 357899999999999999999654 3  4555555666666665554  3457899999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.+++  +|+.+....|..+.+++...+..-+.
T Consensus       110 l~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        110 LLLFD--KGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             EEEEE--CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            99998  58877777788888888766655553

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.07  E-value=4.6e-05  Score=62.08  Aligned_cols=78  Identities=9%  Similarity=0.204  Sum_probs=60.0

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT  148 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t  148 (342)
                      ...+.+++++++|+|+++||..|+.+.      +.+.++.++  +..++.+|++.  ...+++.|++.++|+++++.  .
T Consensus        15 ~~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk--~   84 (113)
T cd02989          15 FFEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFK--N   84 (113)
T ss_pred             HHHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEE--C
Confidence            334445679999999999999999985      344444443  46777777655  44689999999999999997  6


Q ss_pred             CceEEEEeCC
Q 019378          149 GQKMRSWCGM  158 (342)
Q Consensus       149 G~~l~~~~G~  158 (342)
                      |+.+.++.|.
T Consensus        85 G~~v~~~~g~   94 (113)
T cd02989          85 GKTVDRIVGF   94 (113)
T ss_pred             CEEEEEEECc
Confidence            8999998884

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.06  E-value=6.5e-05  Score=59.11  Aligned_cols=86  Identities=13%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      +.+++++|+|+++||..|+.|... |  ..+.+-+...+.+..+|.+.  ...+++.|++.++|+++++.+. ......+
T Consensus        16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~-~~~~~~~   89 (103)
T cd03001          16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAG-KNSPQDY   89 (103)
T ss_pred             cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCC-Ccceeec
Confidence            457789999999999999999532 2  22333444556666666653  4568899999999999999852 2455678


Q ss_pred             eCCCChHHHHHH
Q 019378          156 CGMVQPESLLED  167 (342)
Q Consensus       156 ~G~~~~~~~l~~  167 (342)
                      .|..+.+.+...
T Consensus        90 ~g~~~~~~l~~~  101 (103)
T cd03001          90 QGGRTAKAIVSA  101 (103)
T ss_pred             CCCCCHHHHHHH
Confidence            888888877654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.05  E-value=2.3e-05  Score=64.47  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCCh---------------------hHHHH
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS---------------------EGKKV  129 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~---------------------eg~~~  129 (342)
                      ..+.-.+|+++|+|.++||..|..+..      .+.++-+.. +.++.++.+..                     ....+
T Consensus        19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   92 (127)
T cd03010          19 TSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRV   92 (127)
T ss_pred             cHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchH
Confidence            334445899999999999999998653      333333322 45555443211                     12346


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHH
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESL  164 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~  164 (342)
                      +..|++..+|+.+|||+ +|+++.++.|.++.+.+
T Consensus        93 ~~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          93 GIDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             HHhcCCCCCCeEEEECC-CceEEEEEeccCChHhc
Confidence            67899999999999997 69999999998887643

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.04  E-value=4.4e-05  Score=66.06  Aligned_cols=96  Identities=20%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------------HHHHHH
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------GKKVCT  131 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------------g~~~~~  131 (342)
                      ..+.-.+|+++|+|.++||..|......+  +....++-..++.++.++.+...                    ...+++
T Consensus        55 ~l~~~~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  132 (173)
T PRK03147         55 ELKDLKGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID  132 (173)
T ss_pred             eHHHcCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence            33344689999999999999998864221  11122222334667777665432                    235678


Q ss_pred             hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      .|++..+|+++||++ +|+++..+.|..+.+++.+.|..
T Consensus       133 ~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        133 AYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             HcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence            899999999999997 78999999999998888776653

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.02  E-value=0.0001  Score=60.06  Aligned_cols=95  Identities=11%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      +..+....+.++|+++.+||.+|+.+.+ +|..  +.+.. ...-+..+|++.  ...++..|++.++|+++|.+.  |.
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~~--la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~--g~   86 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLEE--LSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQD--GG   86 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHH-HHHH--HHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeC--Ce
Confidence            3445567888999999999999998843 2221  11111 345566667664  567999999999999999973  33


Q ss_pred             eEE--EEeCCCChHHHHHHHHhhhh
Q 019378          151 KMR--SWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       151 ~l~--~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ...  +..|..+..+|.+.|..+++
T Consensus        87 ~~~~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          87 KDGGIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             ecceEEEEecCchHHHHHHHHHHHh
Confidence            222  57798888888887776664

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.96  E-value=0.00022  Score=57.96  Aligned_cols=101  Identities=9%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCC
Q 019378           49 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDT  123 (342)
Q Consensus        49 ~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s  123 (342)
                      +.|..+-+=  |-.-..+|++-.    +.+..++|.|+.+|  |.+|..+.      +.+.++.++   .+.++.+|++.
T Consensus         4 ~~~~~~~~~--~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~------P~leela~e~~~~v~f~kVdid~   71 (111)
T cd02965           4 ARLQTRHGW--PRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVA------VVLPELLKAFPGRFRAAVVGRAD   71 (111)
T ss_pred             HHHHHhcCC--cccccccHHHHH----hCCCCEEEEecCCcccCcchhhhH------hHHHHHHHHCCCcEEEEEEECCC
Confidence            445554432  234567888655    67788899999996  99999984      445555543   46677777776


Q ss_pred             hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHH
Q 019378          124 SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLL  165 (342)
Q Consensus       124 ~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l  165 (342)
                      ..  .++..|+|.++|+++++.  +|+.+..+.|..+.+++.
T Consensus        72 ~~--~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          72 EQ--ALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             CH--HHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence            54  899999999999999997  699999999998888775

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.95  E-value=4.8e-05  Score=66.91  Aligned_cols=82  Identities=16%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ..|.+++..+. .+++++|+|+.+||.+|+.|+.      .+..+..+  +..|+.++++..   .++..|++..+|+++
T Consensus        71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~------~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll  140 (175)
T cd02987          71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNS------SLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL  140 (175)
T ss_pred             HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHH------HHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence            45555554322 2359999999999999999963      34444443  578888888753   788999999999999


Q ss_pred             EEeCCCCceEEEEeCC
Q 019378          143 VVDPITGQKMRSWCGM  158 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~  158 (342)
                      |+-  .|+.+.++.|.
T Consensus       141 lyk--~G~~v~~~vG~  154 (175)
T cd02987         141 VYK--GGELIGNFVRV  154 (175)
T ss_pred             EEE--CCEEEEEEech
Confidence            997  69999998874

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.89  E-value=8.4e-05  Score=61.54  Aligned_cols=74  Identities=15%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh------ccEEEEEeecCChh----------------------
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS------TNFIFWQVYDDTSE----------------------  125 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~------~~FV~w~~~~~s~e----------------------  125 (342)
                      +.-.+|++||+|+.+||..|..+..      .+.++.+      .++.++.++++..+                      
T Consensus        14 ~~~~gk~vll~Fwa~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T cd03009          14 SSLEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRER   87 (131)
T ss_pred             HHhCCcEEEEEEECCCChHHHHHhH------HHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHH
Confidence            3346899999999999999998743      3433322      14655655655332                      


Q ss_pred             HHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378          126 GKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus       126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      ...++..|++..+|+++||++ +|+++.+
T Consensus        88 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~  115 (131)
T cd03009          88 RSRLNRTFKIEGIPTLIILDA-DGEVVTT  115 (131)
T ss_pred             HHHHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence            135678899999999999997 6887644

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=9.8e-05  Score=69.24  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      -.-+|++.+.++.+ .+|+||||+++||.+|..|...+   +.+..--+..|++-.+|++..  ..++..++|.++|+++
T Consensus        29 T~anfe~~V~~~S~-~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~  102 (304)
T COG3118          29 TEANFEQEVIQSSR-EVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVY  102 (304)
T ss_pred             hHhHHHHHHHHHcc-CCCeEEEecCCCCchHHHHHHHH---HHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEE
Confidence            34567777777644 48999999999999999996332   233333345899999888764  4588999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .+-  .|+.|.-+.|....+.+-..|..++.
T Consensus       103 af~--dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118         103 AFK--DGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             Eee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence            886  69999999997777666555554444

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.85  E-value=0.00018  Score=61.92  Aligned_cols=81  Identities=11%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCC---
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDS---  137 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~---  137 (342)
                      .+|++.+..  ..+++++|+|+++||.+|+.+..      .+.++.+    .++.+..+|++...  .+++.|++.+   
T Consensus        36 ~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p------~l~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~  105 (152)
T cd02962          36 KTLEEELER--DKRVTWLVEFFTTWSPECVNFAP------VFAELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPL  105 (152)
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCC
Confidence            445554432  35689999999999999999853      3334433    35888998887643  6888899877   


Q ss_pred             ---CcEEEEEeCCCCceEEEEeC
Q 019378          138 ---IPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       138 ---~P~l~ii~p~tG~~l~~~~G  157 (342)
                         +|+++++.  +|+.+.++.|
T Consensus       106 v~~~PT~ilf~--~Gk~v~r~~G  126 (152)
T cd02962         106 SKQLPTIILFQ--GGKEVARRPY  126 (152)
T ss_pred             cCCCCEEEEEE--CCEEEEEEec
Confidence               99999987  7999999887

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.79  E-value=7.9e-05  Score=58.60  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCCh--hH------------------
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTS--EG------------------  126 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~--eg------------------  126 (342)
                      +..+.-.+|+++|++..+||..|..+.      +.+.++..    .++.++.++.+..  +.                  
T Consensus        12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (116)
T cd02966          12 VSLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP   85 (116)
T ss_pred             eehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence            444455589999999999999998753      33333332    3567777777652  22                  


Q ss_pred             -HHHHHhCCCCCCcEEEEEeCCCCceEEEEeC
Q 019378          127 -KKVCTYYKLDSIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       127 -~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G  157 (342)
                       ..++..|++..+|.++|+|+ +|+++....|
T Consensus        86 ~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g  116 (116)
T cd02966          86 DGELAKAYGVRGLPTTFLIDR-DGRIRARHVG  116 (116)
T ss_pred             cchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence             45778899999999999998 6888887765

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.78  E-value=0.00017  Score=72.00  Aligned_cols=98  Identities=11%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      .+|++++    +++++++|+|+++||..|+.+....   ..+.+.+..   ++.+..+|.+.  ...+++.|++.+||++
T Consensus         9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~   79 (462)
T TIGR01130         9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL   79 (462)
T ss_pred             HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence            3455544    5689999999999999999996433   234444432   37777777654  4678999999999999


Q ss_pred             EEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378          142 LVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       142 ~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .++.  .|+. +....|..+.+.|...+...+.
T Consensus        80 ~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~~  110 (462)
T TIGR01130        80 KIFR--NGEDSVSDYNGPRDADGIVKYMKKQSG  110 (462)
T ss_pred             EEEe--CCccceeEecCCCCHHHHHHHHHHhcC
Confidence            9986  4666 6788999999888877766654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.77  E-value=0.0002  Score=71.98  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=77.8

Q ss_pred             HHHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHH
Q 019378           51 LASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKK  128 (342)
Q Consensus        51 l~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~  128 (342)
                      -.++|..+.-+ +-..+|++.+.. +..++++||+|+.+||..|+.|... |  +++.+-+.. .+.+..++++..+...
T Consensus       344 ~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~  419 (463)
T TIGR00424       344 VADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEF  419 (463)
T ss_pred             cccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHH
Confidence            55677544332 445578887643 5789999999999999999999654 2  445554544 3677778887643333


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEe-CCCChHHHHHHHH
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLV  169 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~-G~~~~~~~l~~L~  169 (342)
                      .++.|+|.+||+++++... +....... |.-+.+.|+..+.
T Consensus       420 ~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv~  460 (463)
T TIGR00424       420 AKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFVN  460 (463)
T ss_pred             HHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHHH
Confidence            4578999999999999753 22233454 4678888876544

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.77  E-value=8.2e-05  Score=63.53  Aligned_cols=74  Identities=15%  Similarity=0.305  Sum_probs=50.7

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---h--------ccEEEEEeecCCh------------------
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S--------TNFIFWQVYDDTS------------------  124 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~--------~~FV~w~~~~~s~------------------  124 (342)
                      +.=++|+++|||.++||.+|..+...+      .++-   +        ++|.++.++.+..                  
T Consensus        21 s~~kgk~vlL~FwAsWCppCr~e~P~L------~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~   94 (146)
T cd03008          21 ARLENRVLLLFFGAVVSPQCQLFAPKL------KDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL   94 (146)
T ss_pred             HHhCCCEEEEEEECCCChhHHHHHHHH------HHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence            344689999999999999999975332      2211   1        1244444444322                  


Q ss_pred             -----hHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378          125 -----EGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus       125 -----eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                           .+..++..|++..+|+++|||+ +|+++.+
T Consensus        95 p~~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~  128 (146)
T cd03008          95 PFEDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA  128 (146)
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence                 2235677899999999999998 6888755

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00102 disulphide isomerase; Provisional

Probab=97.76  E-value=0.00017  Score=72.67  Aligned_cols=98  Identities=9%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      ..+|++++    ++++++||+|+++||..|+.+.... .  .+.+.++   .++++..+|.+.  ...++..|++.+||+
T Consensus        39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~~~--~~~l~~~~~i~~~Pt  109 (477)
T PTZ00102         39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDATE--EMELAQEFGVRGYPT  109 (477)
T ss_pred             hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEECCC--CHHHHHhcCCCcccE
Confidence            34555544    5688999999999999999986542 2  2333333   357777777654  457899999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.++..  |..+ ...|..+++.|+..|...+.
T Consensus       110 ~~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~  139 (477)
T PTZ00102        110 IKFFNK--GNPV-NYSGGRTADGIVSWIKKLTG  139 (477)
T ss_pred             EEEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence            999984  5555 78899999999888877655

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.73  E-value=0.00023  Score=57.98  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=56.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      ..+|++.+.   ..+|+++|+|+++||..|+.|.. +|.  .+.+-+++   .+.+..+|.+......+++.|++..+|+
T Consensus         8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            345666664   44589999999999999999964 343  34444443   2556666665555678899999999999


Q ss_pred             EEEEeC
Q 019378          141 VLVVDP  146 (342)
Q Consensus       141 l~ii~p  146 (342)
                      +.++.+
T Consensus        82 ~~lf~~   87 (114)
T cd02992          82 LRYFPP   87 (114)
T ss_pred             EEEECC
Confidence            999976

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.73  E-value=0.00024  Score=72.33  Aligned_cols=90  Identities=13%  Similarity=0.098  Sum_probs=62.2

Q ss_pred             cCCeEEEEEecCCCcchhhhhhccc------C-------------------CHHHHHHHhc-cEEEEEeecCChhHHHHH
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTW------A-------------------NEAVSQTIST-NFIFWQVYDDTSEGKKVC  130 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl------~-------------------~~~V~~~i~~-~FV~w~~~~~s~eg~~~~  130 (342)
                      .+|++||+|+.+||.+|......+=      .                   ..++.++++. +|..|.++.+.  ...++
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~--~~~la  132 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN--GGTLA  132 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc--cHHHH
Confidence            7999999999999999999642110      0                   0112222221 22222222222  34577


Q ss_pred             HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      +.|++..+|+++||++ +|+++..+.|.++.+++...|.
T Consensus       133 k~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence            8999999999999997 7999999999999988877666

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.71  E-value=0.00021  Score=56.24  Aligned_cols=89  Identities=24%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCceEEEE
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~l~~~  155 (342)
                      +++++|.|.++||.+|..+...+   .+|.+-.+..+.|..+|.+  +...+++.|++.  .+|+++++...+|......
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~--~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~   86 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDAD--DFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP   86 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchH--hhHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence            78999999999999999985321   2344444456677665554  456789999998  9999999997556655545


Q ss_pred             eCCCChHHHHHHHHhh
Q 019378          156 CGMVQPESLLEDLVPF  171 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~  171 (342)
                      .|..+.+.+...|..+
T Consensus        87 ~~~~~~~~l~~fi~~~  102 (103)
T cd02982          87 EEELTAESLEEFVEDF  102 (103)
T ss_pred             ccccCHHHHHHHHHhh
Confidence            5556777776555443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.68  E-value=0.00058  Score=63.54  Aligned_cols=92  Identities=12%  Similarity=0.148  Sum_probs=75.7

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh--hH-------HHHHHhCCCCCCcEEEEEeCC
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------KKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~--eg-------~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      .+|=||+|+.++|..|+.|.      +-|+.+-+. +|-+..+++|..  .+       ...++.+++..+|++++|+|.
T Consensus       150 ~~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~  223 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK  223 (256)
T ss_pred             hceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence            47999999999999999984      556666665 588888887754  11       346788999999999999998


Q ss_pred             CCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          148 TGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      |++..-.-.|.++.++|++.|..++..+
T Consensus       224 t~~~~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       224 SQKMSPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence            8877777789999999999999888766

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.64  E-value=0.00029  Score=54.72  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCCh-----------------------hHHHHHHh
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS-----------------------EGKKVCTY  132 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~-----------------------eg~~~~~~  132 (342)
                      ||+++|||.++||.+|..+...+-   ++.+-+.  .++.+..++.+..                       ....+.+.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~---~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   77 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLK---ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK   77 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence            799999999999999998753321   1333333  4555555554432                       12345678


Q ss_pred             CCCCCCcEEEEEeCCCCce
Q 019378          133 YKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~  151 (342)
                      |++..+|+++||++ +|++
T Consensus        78 ~~i~~iP~~~lld~-~G~I   95 (95)
T PF13905_consen   78 YGINGIPTLVLLDP-DGKI   95 (95)
T ss_dssp             TT-TSSSEEEEEET-TSBE
T ss_pred             CCCCcCCEEEEECC-CCCC
Confidence            99999999999997 6763

...

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.63  E-value=0.00034  Score=58.16  Aligned_cols=79  Identities=16%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH---hc---cEEEEEeecCChh-----------------
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---ST---NFIFWQVYDDTSE-----------------  125 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~---~FV~w~~~~~s~e-----------------  125 (342)
                      +-+..+.-.+|++||+|.++||..|....      +.+.++.   .+   ++.++.++.+...                 
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            44555666789999999999999999864      2333322   22   3445545444321                 


Q ss_pred             ------HHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378          126 ------GKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus       126 ------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                            ...+++.|++..+|+++||++ +|+++.+
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~  115 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT  115 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence                  234667899999999999996 6887643

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=97.61  E-value=0.00031  Score=57.87  Aligned_cols=63  Identities=13%  Similarity=0.103  Sum_probs=50.3

Q ss_pred             cCCeEEEEEec-------CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChh-----HHHHHHhCCCC-CCcE
Q 019378           77 QDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSE-----GKKVCTYYKLD-SIPV  140 (342)
Q Consensus        77 ~~K~LlV~l~~-------~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~e-----g~~~~~~y~v~-~~P~  140 (342)
                      .+++++|+|++       +||.+|..+.      +.|.++..+   +..++.++++...     ...+...|++. ++|+
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~------P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT   93 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAE------PVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT   93 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhc------hhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence            57999999999       9999999974      445555543   6788889987632     46788899998 9999


Q ss_pred             EEEEe
Q 019378          141 VLVVD  145 (342)
Q Consensus       141 l~ii~  145 (342)
                      ++++.
T Consensus        94 ~~~~~   98 (119)
T cd02952          94 LLRWK   98 (119)
T ss_pred             EEEEc
Confidence            99995

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PTZ00062 glutaredoxin; Provisional

Probab=97.58  E-value=0.00075  Score=60.81  Aligned_cols=77  Identities=16%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      ....+++||+++||.+|..|+      +-+.++..+  ++.|+.++.+          |.|..+|+++++.  +|+.+.+
T Consensus        16 ~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~--~g~~i~r   77 (204)
T PTZ00062         16 NTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ--NSQLINS   77 (204)
T ss_pred             CCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE--CCEEEee
Confidence            337789999999999999985      333444443  6888888876          9999999999997  6999999


Q ss_pred             EeCCCChHHHHHHHHhhh
Q 019378          155 WCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       155 ~~G~~~~~~~l~~L~~~l  172 (342)
                      +.|. ++.++...|....
T Consensus        78 ~~G~-~~~~~~~~~~~~~   94 (204)
T PTZ00062         78 LEGC-NTSTLVSFIRGWA   94 (204)
T ss_pred             eeCC-CHHHHHHHHHHHc
Confidence            9984 5666665554443

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.57  E-value=0.00073  Score=62.57  Aligned_cols=92  Identities=13%  Similarity=0.167  Sum_probs=74.1

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh---------HHHHHHhCCCCCCcEEEEEeCC
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------GKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e---------g~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      ++|=||+|+.++|..|+.|.      +-|+.+-+. +|-++.+++|..-         ....+..+++..+|.+++|+|.
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~  216 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPK  216 (248)
T ss_pred             hcceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECC
Confidence            46999999999999999994      566667665 5888888876411         1124568999999999999998


Q ss_pred             CCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          148 TGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      |++..-.-.|.++.++|.+.|..+...+
T Consensus       217 t~~~~pv~~G~iS~deL~~Ri~~v~t~~  244 (248)
T PRK13703        217 SGSVRPLSYGFITQDDLAKRFLNVSTDF  244 (248)
T ss_pred             CCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence            8888777889999999999998887655

>PTZ00102 disulphide isomerase; Provisional

Probab=97.57  E-value=0.0003  Score=70.87  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++   ...+|++||+|+++||..|+.|.. +|.  ++.+...  .++++..+|.+..+  ..+..|++.++|+
T Consensus       363 ~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt  434 (477)
T PTZ00102        363 VGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPT  434 (477)
T ss_pred             cccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCe
Confidence            345666554   467899999999999999999853 343  2222333  35777777776533  3577899999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++++.+ ++++..++.|..+.+.+...|......
T Consensus       435 ~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        435 ILFVKA-GERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             EEEEEC-CCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            999985 445445789999999888777666543

>PLN02309 5'-adenylylsulfate reductase

Probab=97.57  E-value=0.0007  Score=68.06  Aligned_cols=113  Identities=12%  Similarity=0.141  Sum_probs=74.1

Q ss_pred             HHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHHHH
Q 019378           52 ASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKV  129 (342)
Q Consensus        52 ~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~~~  129 (342)
                      +++|..+..+ +-..+|++.+. ....+|++||+|+.+||..|+.|... |.  ++.+-+. .++.+..+|++..+ ..+
T Consensus       339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d~~~-~~l  413 (457)
T PLN02309        339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRADGDQ-KEF  413 (457)
T ss_pred             ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECCCcc-hHH
Confidence            5667544333 23344554443 34789999999999999999999653 22  3444444 35999998887322 356


Q ss_pred             HH-hCCCCCCcEEEEEeCCCCceEEEEe-CCCChHHHHHHHHh
Q 019378          130 CT-YYKLDSIPVVLVVDPITGQKMRSWC-GMVQPESLLEDLVP  170 (342)
Q Consensus       130 ~~-~y~v~~~P~l~ii~p~tG~~l~~~~-G~~~~~~~l~~L~~  170 (342)
                      +. .|+|.+||+|+++.+.+.. ..... |.-+.+.|+..+..
T Consensus       414 a~~~~~I~~~PTil~f~~g~~~-~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        414 AKQELQLGSFPTILLFPKNSSR-PIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             HHhhCCCceeeEEEEEeCCCCC-eeecCCCCcCHHHHHHHHHH
Confidence            65 6999999999999753222 22344 45688887765543

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.54  E-value=0.00092  Score=60.77  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------hHHHHHHhCCCCCCcEEEEEeC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------EGKKVCTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------eg~~~~~~y~v~~~P~l~ii~p  146 (342)
                      .++|=||+|+.++|..|+.+.      +-|..+-++ +|-+..+++|..         ....++..+++..+|++++|+|
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~  192 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP  192 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence            468999999999999999984      556666655 587888777631         1244677899999999999999


Q ss_pred             CCCceEEEEeCCCChHHHHHHH
Q 019378          147 ITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       147 ~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      .+++..-.-.|.++.++|++.|
T Consensus       193 ~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  193 NTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CCCeEEEEeeecCCHHHHHHhh
Confidence            8777777778999999998765

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.51  E-value=0.00097  Score=58.89  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh-----------hHHHHHHhCCC--CCCcEEEEEeCC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS-----------EGKKVCTYYKL--DSIPVVLVVDPI  147 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~-----------eg~~~~~~y~v--~~~P~l~ii~p~  147 (342)
                      ||+|..+||..|+.+.      +.+.++-++ .|.++.++.+..           .+..+...|++  ..+|+.+|||+ 
T Consensus        73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~-  145 (181)
T PRK13728         73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV-  145 (181)
T ss_pred             EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC-
Confidence            7789999999999974      556666655 588888776633           12345678884  69999999997 


Q ss_pred             CCceE-EEEeCCCChHHHHHHHHhhhhc
Q 019378          148 TGQKM-RSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       148 tG~~l-~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .|.++ ....|.++.+++...|...+..
T Consensus       146 ~G~i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        146 NTLEALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence            67775 5789999999998888887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.47  E-value=0.00069  Score=75.01  Aligned_cols=92  Identities=14%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeec---CC---hh-------------------HH
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYD---DT---SE-------------------GK  127 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~---~s---~e-------------------g~  127 (342)
                      .+|++||+|+.+||.+|....      |.+.++-+    .+|+++++..   +.   .+                   ..
T Consensus       419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~  492 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM  492 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence            699999999999999999854      44444433    2477777642   11   11                   12


Q ss_pred             HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      .+...|++..+|+++|||+ +|+++.++.|....+.+.+.|...+..+
T Consensus       493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~  539 (1057)
T PLN02919        493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYY  539 (1057)
T ss_pred             HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence            4567889999999999997 6999999999988888888888777654

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.46  E-value=0.0018  Score=57.90  Aligned_cols=89  Identities=17%  Similarity=0.377  Sum_probs=61.9

Q ss_pred             hCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHh
Q 019378           55 YRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTY  132 (342)
Q Consensus        55 f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~  132 (342)
                      ||...++ -..+|.+.+..| ..++|++|+|+.+||..|..|+      +.+..+...  ...|+.++++.     .+..
T Consensus        81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~  147 (192)
T cd02988          81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPN  147 (192)
T ss_pred             CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhh
Confidence            4544333 334555554433 2346999999999999999996      334444443  35666767653     3678


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      |++..+|+++|+-  +|+.+.++.|.
T Consensus       148 ~~i~~lPTlliyk--~G~~v~~ivG~  171 (192)
T cd02988         148 YPDKNLPTILVYR--NGDIVKQFIGL  171 (192)
T ss_pred             CCCCCCCEEEEEE--CCEEEEEEeCc
Confidence            9999999999997  69999998874

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00091  Score=61.21  Aligned_cols=91  Identities=14%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      .++.-+|.++|.|+.+||.+|+..      .|-+.++-+.  .+||+.+|++  +....+..|+|...|++++.-  +|.
T Consensus        16 ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd--~c~~taa~~gV~amPTFiff~--ng~   85 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVD--ECRGTAATNGVNAMPTFIFFR--NGV   85 (288)
T ss_pred             hhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHH--HhhchhhhcCcccCceEEEEe--cCe
Confidence            345678999999999999999996      4667777776  5999998876  577788999999999999885  789


Q ss_pred             eEEEEeCCCChHHHHHHHHhhhhc
Q 019378          151 KMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .+.+++| .++.-|-+.+..+++.
T Consensus        86 kid~~qG-Ad~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   86 KIDQIQG-ADASGLEEKVAKYAST  108 (288)
T ss_pred             EeeeecC-CCHHHHHHHHHHHhcc
Confidence            9999999 5677777777777764

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.35  E-value=0.0023  Score=55.48  Aligned_cols=96  Identities=16%  Similarity=0.201  Sum_probs=65.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCCh--------hH-------------------HH
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTS--------EG-------------------KK  128 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~--------eg-------------------~~  128 (342)
                      .+|++||+|+.++|..|...-..+   .++.+-+ +.++.++.+..++.        +.                   ..
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l---~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~  100 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRL---NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE  100 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHH---HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence            679999999999999997543221   1222222 34677787776542        11                   13


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEE------e---CCCChHHHHHHHHhhhhcCC
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSW------C---GMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~------~---G~~~~~~~l~~L~~~l~~~~  176 (342)
                      +++.|++...|+++|||+ +|+++...      .   +..+.+++...|...+...+
T Consensus       101 ~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  156 (171)
T cd02969         101 VAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP  156 (171)
T ss_pred             HHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence            456788889999999998 78887553      1   22466788888888887653

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.35  E-value=0.0015  Score=52.34  Aligned_cols=72  Identities=13%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHH-----------------HHhCCCCCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKV-----------------CTYYKLDSI  138 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~-----------------~~~y~v~~~  138 (342)
                      ++|+++|+|.++||..|......+   .++.+.....+.++.+..++ .+...+                 ...|++..+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   96 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL   96 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence            589999999999999999875332   12333233445444443222 223233                 345666777


Q ss_pred             cEEEEEeCCCCceE
Q 019378          139 PVVLVVDPITGQKM  152 (342)
Q Consensus       139 P~l~ii~p~tG~~l  152 (342)
                      |+.+|||+ .|+++
T Consensus        97 P~~~vid~-~G~v~  109 (114)
T cd02967          97 PYAVLLDE-AGVIA  109 (114)
T ss_pred             CeEEEECC-CCeEE
Confidence            88888886 56654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.33  E-value=0.0016  Score=58.90  Aligned_cols=90  Identities=10%  Similarity=0.101  Sum_probs=63.8

Q ss_pred             cCCeEEEEEe--cCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           77 QDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        77 ~~K~LlV~l~--~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      .++.|+++++  .+||.+|+.+..      -+.++...  +.-+..++++..+...++..|++.++|+++++.  .|+.+
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p------~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~--~g~~~   90 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQ------LLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILE--EGKDG   90 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHH------HHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEe--CCeee
Confidence            4566666555  289999999853      33333222  232334566666788999999999999999997  47777


Q ss_pred             -EEEeCCCChHHHHHHHHhhhhc
Q 019378          153 -RSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       153 -~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                       .+..|..+.++|...|...+..
T Consensus        91 ~~~~~G~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        91 GIRYTGIPAGYEFAALIEDIVRV  113 (215)
T ss_pred             EEEEeecCCHHHHHHHHHHHHHh
Confidence             4889988888887777766543

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PHA02125 thioredoxin-like protein

Probab=97.29  E-value=0.0018  Score=48.59  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC-C
Q 019378           81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-V  159 (342)
Q Consensus        81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~-~  159 (342)
                      ++|+|+++||.+|+.+..- |.     + +  .|.+..+|.  .+...++..|++.++|++.     .|+.+..+.|. .
T Consensus         1 ~iv~f~a~wC~~Ck~~~~~-l~-----~-~--~~~~~~vd~--~~~~~l~~~~~v~~~PT~~-----~g~~~~~~~G~~~   64 (75)
T PHA02125          1 MIYLFGAEWCANCKMVKPM-LA-----N-V--EYTYVDVDT--DEGVELTAKHHIRSLPTLV-----NTSTLDRFTGVPR   64 (75)
T ss_pred             CEEEEECCCCHhHHHHHHH-HH-----H-H--hheEEeeeC--CCCHHHHHHcCCceeCeEE-----CCEEEEEEeCCCC
Confidence            3799999999999998653 21     1 1  245555454  4466889999999999986     47888888895 2


Q ss_pred             ChHHHHHHH
Q 019378          160 QPESLLEDL  168 (342)
Q Consensus       160 ~~~~~l~~L  168 (342)
                      +..++.+.|
T Consensus        65 ~~~~l~~~~   73 (75)
T PHA02125         65 NVAELKEKL   73 (75)
T ss_pred             cHHHHHHHh
Confidence            335565544

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=97.29  E-value=0.0012  Score=54.33  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC------ChhH--------------
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD------TSEG--------------  126 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~------s~eg--------------  126 (342)
                      +..+.-.+|+++|+|.+.||..|....      +.+.++.+    .++.++.++.+      +.+.              
T Consensus        16 v~l~~~~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~   89 (126)
T cd03012          16 LSLAQLRGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPV   89 (126)
T ss_pred             cCHHHhCCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCE
Confidence            344444789999999999999998753      23333332    35666666431      1221              


Q ss_pred             -----HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378          127 -----KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       127 -----~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                           ..+...|++..+|+.+|||+ +|+++..+.|.
T Consensus        90 ~~D~~~~~~~~~~v~~~P~~~vid~-~G~v~~~~~G~  125 (126)
T cd03012          90 ANDNDYATWRAYGNQYWPALYLIDP-TGNVRHVHFGE  125 (126)
T ss_pred             EECCchHHHHHhCCCcCCeEEEECC-CCcEEEEEecC
Confidence                 12345688899999999997 69998888773

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.28  E-value=0.0024  Score=57.33  Aligned_cols=94  Identities=13%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC--------C-hhHHHHHHhCCC-----
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCTYYKL-----  135 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~--------s-~eg~~~~~~y~v-----  135 (342)
                      +.-.+|++||++..+||..|..-.      +.+.++.+    ..+.+++++.+        + .+...++..+++     
T Consensus        35 ~~~kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl  108 (199)
T PTZ00056         35 SSLKNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFF  108 (199)
T ss_pred             HHhCCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceee
Confidence            334689999999999999997521      33333332    35777777642        2 234555554433     


Q ss_pred             -------------------------------CCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          136 -------------------------------DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       136 -------------------------------~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                                                     ..+|   +.+|||+ .|.++.++.|..+++.+...|...+..
T Consensus       109 ~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        109 EPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             eeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                           1122   4678886 799999999988988888877777653

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.25  E-value=0.0029  Score=56.15  Aligned_cols=89  Identities=15%  Similarity=0.205  Sum_probs=56.3

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChh------------------HHHHHHhC
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSE------------------GKKVCTYY  133 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~e------------------g~~~~~~y  133 (342)
                      ...+|+++|+|.++||..|...-.      .+.++.+   -+++++.  .++.+                  ...++..|
T Consensus        71 ~~~gk~vvl~F~atwCp~C~~~lp------~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y  142 (189)
T TIGR02661        71 IAPGRPTLLMFTAPSCPVCDKLFP------IIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAF  142 (189)
T ss_pred             hcCCCEEEEEEECCCChhHHHHHH------HHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence            347899999999999999988643      2222222   2344332  22211                  22456788


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++..+|+.+|||+ .|+++.+  |.....+-++.+...+..
T Consensus       143 ~v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~  180 (189)
T TIGR02661       143 QVGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADRE  180 (189)
T ss_pred             cCCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHc
Confidence            9999999999997 6887754  555444445555555544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.14  E-value=0.0049  Score=51.13  Aligned_cols=87  Identities=14%  Similarity=0.163  Sum_probs=54.6

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCCC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKLD  136 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v~  136 (342)
                      .+|+++|+|. +.+|..|......+  +....++-..++.++.+..++.+.                   ..++..|++.
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l--~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~   99 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDF--RDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW   99 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence            4889999988 57888887543321  111122222345555554444322                   2455677877


Q ss_pred             CC---------cEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          137 SI---------PVVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       137 ~~---------P~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      .+         |+.+|||+ +|+++..+.|......+-+
T Consensus       100 ~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         100 GEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             cccccccCCcceeEEEECC-CCEEEEEEecCCccchHHH
Confidence            77         99999997 7999999999876555543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.09  E-value=0.0063  Score=45.58  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      ++-|+++||..|+.+..      .+.++.   +..+-+..+|.+.  ....++.|++.++|++++    .|+  .++.|.
T Consensus         3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~vPt~~~----~g~--~~~~G~   68 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKR------VVEEVAKEMGDAVEVEYINVME--NPQKAMEYGIMAVPAIVI----NGD--VEFIGA   68 (82)
T ss_pred             EEEEECCCCcchHHHHH------HHHHHHHHhcCceEEEEEeCcc--CHHHHHHcCCccCCEEEE----CCE--EEEecC
Confidence            45677899999999853      333332   3446667777653  446778899999999975    355  278898


Q ss_pred             CChHHHHHHHHhh
Q 019378          159 VQPESLLEDLVPF  171 (342)
Q Consensus       159 ~~~~~~l~~L~~~  171 (342)
                      .+++++...|...
T Consensus        69 ~~~~~l~~~l~~~   81 (82)
T TIGR00411        69 PTKEELVEAIKKR   81 (82)
T ss_pred             CCHHHHHHHHHhh
Confidence            8999988877654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.04  E-value=0.0076  Score=55.56  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .|+.+|||+ .|+++.++.|.++++++...|...+.
T Consensus       201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL~  235 (236)
T PLN02399        201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLLA  235 (236)
T ss_pred             CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHhc
Confidence            589999997 79999999999999988887777653

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=97.03  E-value=0.0047  Score=50.67  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEec--CCCc---chhhhhhcccCCHHHHHHHhccEEEEEeecCC---hhHHHHHHhCCC
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQS--TKEF---SSHMLNRDTWANEAVSQTISTNFIFWQVYDDT---SEGKKVCTYYKL  135 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~--~~~~---~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s---~eg~~~~~~y~v  135 (342)
                      ..+|++++    ++++.+||-|+.  +||.   .|..|....-..       ....++-.++.+.   .+...+++.|+|
T Consensus         8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~~~~~~L~~~y~I   76 (116)
T cd03007           8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASA-------TDDLLVAEVGIKDYGEKLNMELGERYKL   76 (116)
T ss_pred             hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh-------cCceEEEEEecccccchhhHHHHHHhCC
Confidence            34566644    677999999999  8887   666664221110       1247788888865   556789999999


Q ss_pred             C--CCcEEEEEeCCCCc--eEEEEeCC-CChHHHHHHHH
Q 019378          136 D--SIPVVLVVDPITGQ--KMRSWCGM-VQPESLLEDLV  169 (342)
Q Consensus       136 ~--~~P~l~ii~p~tG~--~l~~~~G~-~~~~~~l~~L~  169 (342)
                      .  .||+|.+...  |.  ......|. .+.+.|+..|.
T Consensus        77 ~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v~  113 (116)
T cd03007          77 DKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFLK  113 (116)
T ss_pred             CcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHHH
Confidence            9  9999999873  53  33467786 88888876554

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=97.00  E-value=0.0053  Score=45.70  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|.||.++|+.+..++..++||..|-+.+.... +.+....+|+  |..+.  +  +.+.||.+.|+. +++|.+.+
T Consensus         2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~--~~g~~--L--~d~~tl~~~~i~~g~~i~l~~   71 (76)
T cd01806           2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLI--YSGKQ--M--NDDKTAADYKLEGGSVLHLVL   71 (76)
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEE--ECCeE--c--cCCCCHHHcCCCCCCEEEEEE
Confidence            688999999999999999999999999998763 6677788887  44553  4  457899999998 56676654

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=97.00  E-value=0.0034  Score=62.51  Aligned_cols=99  Identities=11%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSI  138 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~  138 (342)
                      +...+|.+.+.   ..++.+||+|+.+||..|..|... |  .++.+.++.   ++.+..+|.+..+   +.. |++..+
T Consensus       351 l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~  420 (462)
T TIGR01130       351 LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPI-Y--EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGF  420 (462)
T ss_pred             eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCcccc
Confidence            44567777653   468999999999999999999653 3  446666665   7889988987654   333 899999


Q ss_pred             cEEEEEeCCCCc-eEEEEeCCCChHHHHHHHHhh
Q 019378          139 PVVLVVDPITGQ-KMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       139 P~l~ii~p~tG~-~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      |+++++.. ++. ....+.|..+.+.++..|...
T Consensus       421 Pt~~~~~~-~~~~~~~~~~g~~~~~~l~~~l~~~  453 (462)
T TIGR01130       421 PTIKFVPA-GKKSEPVPYDGDRTLEDFSKFIAKH  453 (462)
T ss_pred             CEEEEEeC-CCCcCceEecCcCCHHHHHHHHHhc
Confidence            99999974 333 234677888888877655443

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02412 probable glutathione peroxidase

Probab=96.95  E-value=0.0077  Score=52.35  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC--------Ch-hHHHH-HHh----CC--------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--------TS-EGKKV-CTY----YK--------  134 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~--------s~-eg~~~-~~~----y~--------  134 (342)
                      .+|++||+++.+||..|..-...+  ++--.++-..++.+++++.+        +. +..+. ++.    |+        
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~  105 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN  105 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence            579999999999999998521111  11112222335777777643        21 11121 221    11        


Q ss_pred             ----------------------CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          135 ----------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       135 ----------------------v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                                            +...|+.+|||+ .|+++.++.|.++++++...|...++
T Consensus       106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                  223588899997 79999999999999988887777665

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=96.95  E-value=0.002  Score=49.23  Aligned_cols=72  Identities=17%  Similarity=0.110  Sum_probs=42.8

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS  338 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~  338 (342)
                      ..-|+||-|||.. .-....++++..|++-|...+ +.+...|.|....++.. .+..+.++||+++||.++.++
T Consensus         4 ~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l-~~~~~~~~L~~~~~~~~-~l~s~~~~tl~~lglkHGdml   75 (80)
T PF11543_consen    4 SMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQL-SIPDSSQSLSKDRNNKE-ELKSSDSKTLSSLGLKHGDML   75 (80)
T ss_dssp             --EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS----TTT---BSSGGGGG-CSSS-TT-CCCCT---TT-EE
T ss_pred             cEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHc-CCCCcceEEEecCCCCc-ccccCCcCCHHHcCCCCccEE
Confidence            4579999999973 235789999999999999886 44566899987755543 343467899999999965554

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=96.91  E-value=0.0058  Score=52.08  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      +.+|||+ .|++++++.|.++++++..
T Consensus       125 ttflId~-~G~i~~~~~G~~~~~~l~~  150 (152)
T cd00340         125 TKFLVDR-DGEVVKRFAPTTDPEELEK  150 (152)
T ss_pred             EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence            6888996 7999999999888876643

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=96.84  E-value=0.0064  Score=44.74  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=56.0

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      .+|.||.++|+.+..++..+++|..|-+-+.... |.+....+|+.+  .+.  +  +.+.||.+.|+. +++|.+.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~~--g~~--L--~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEV-GIPVEQQRLIYS--GRV--L--KDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEEe
Confidence            3788999999999999999999999999998763 556667778743  442  4  457899999998 57777765

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=96.83  E-value=0.01  Score=45.19  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      ..|-|+.++|+.+...+..++||.+|.+-+.... +.+....+|...|..+.  |  +.+.||.+.|+. +++|.+.+
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~--L--~D~~tL~~~gi~~gs~l~l~~   75 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREV--L--QDGVPLVSQGLGPGSTVLLVV   75 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCC--C--CCCCCHHHcCCCCCCEEEEEE
Confidence            5789999999999999999999999999998764 66778888854555553  5  446799999998 56676654

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=96.83  E-value=0.0078  Score=50.47  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHH---H-hccEEEEEeecCChh-H------------------HHHHH
Q 019378           76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQT---I-STNFIFWQVYDDTSE-G------------------KKVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~---i-~~~FV~w~~~~~s~e-g------------------~~~~~  131 (342)
                      -.+|+++|++... ||..|..--.      .+.++   . ..++.++.+..++.. .                  ..++.
T Consensus        26 ~~gk~~vv~f~~~~~Cp~C~~~~p------~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~   99 (146)
T PF08534_consen   26 FKGKPVVVNFWASAWCPPCRKELP------YLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK   99 (146)
T ss_dssp             GTTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred             hCCCeEEEEEEccCCCCcchhhhh------hHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence            5689999999999 9999987532      22332   2 233444444443322 2                  23456


Q ss_pred             hCCCC---------CCcEEEEEeCCCCceEEEEeCCCC
Q 019378          132 YYKLD---------SIPVVLVVDPITGQKMRSWCGMVQ  160 (342)
Q Consensus       132 ~y~v~---------~~P~l~ii~p~tG~~l~~~~G~~~  160 (342)
                      .|++.         .+|+++|||+ +|+++....|..+
T Consensus       100 ~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~  136 (146)
T PF08534_consen  100 ALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP  136 (146)
T ss_dssp             HTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred             HhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence            78877         9999999996 7999999888655

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=96.77  E-value=0.011  Score=49.44  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=76.0

Q ss_pred             chhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHH----HHHh-ccEEEEEe
Q 019378           45 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVS----QTIS-TNFIFWQV  119 (342)
Q Consensus        45 ~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~----~~i~-~~FV~w~~  119 (342)
                      +.-.++|.+ +|-|  ..-..++++-+    ......+|.|.++-.-.     .++....-|.    +-.. ..+.+..+
T Consensus         8 ~~l~~rl~~-~g~~--~~~~~~~~~~~----~~~~~~vl~~~gdp~r~-----~E~~D~avvleELa~e~~~~~v~~akV   75 (132)
T PRK11509          8 DALWQRMLA-RGWT--PVSESRLDDWL----TQAPDGVVLLSSDPKRT-----PEVSDNPVMIGELLREFPDYTWQVAIA   75 (132)
T ss_pred             HHHHHHHHH-cCCC--ccccccHHHHH----hCCCcEEEEeCCCCCcC-----CccccHHHHHHHHHHHhcCCceEEEEE
Confidence            445666767 3533  23445665555    33345677777753110     1222222222    2223 24778887


Q ss_pred             ecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          120 YDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       120 ~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      |++.  ...++..|+|.++|+++++.  +|+.+.++.|..+.+++++.|..++++
T Consensus        76 DiD~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         76 DLEQ--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             ECCC--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence            7765  46799999999999999997  699999999999999999999999885

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=96.74  E-value=0.02  Score=44.28  Aligned_cols=74  Identities=22%  Similarity=0.309  Sum_probs=59.6

Q ss_pred             CCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          260 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       260 ~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      ..+..++|.|+.++|+.+.-+...+++|+.|++-+... .+.+...++|+..  .+.  +  +.+.|+.++|+. +.+|.
T Consensus         7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f~--G~~--L--~~~~T~~~l~m~d~d~I~   79 (87)
T cd01763           7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-QGLSMNSVRFLFD--GQR--I--RDNQTPDDLGMEDGDEIE   79 (87)
T ss_pred             CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-hCCCccceEEEEC--CeE--C--CCCCCHHHcCCCCCCEEE
Confidence            34678999999999999999999999999999987765 4667778888765  442  4  568999999998 56665


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      |.
T Consensus        80 v~   81 (87)
T cd01763          80 VM   81 (87)
T ss_pred             EE
Confidence            43

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.73  E-value=0.0069  Score=52.01  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhH----------------
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEG----------------  126 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg----------------  126 (342)
                      .-.+......=+||.+.+||...||.+|+.|   |+.=.+|-+.|.++   |-+.=++.+..+.                
T Consensus        21 ~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i   97 (157)
T KOG2501|consen   21 DGTEVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI   97 (157)
T ss_pred             CCccchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence            3344445555678999999999999999999   44445566666666   5555455544322                


Q ss_pred             -------HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378          127 -------KKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus       127 -------~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                             ..++..|.|.+.|.+.+|.| +|..|
T Consensus        98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v  129 (157)
T KOG2501|consen   98 PFGDDLIQKLSEKYEVKGIPALVILKP-DGTVV  129 (157)
T ss_pred             cCCCHHHHHHHHhcccCcCceeEEecC-CCCEe
Confidence                   23567999999999999998 67654

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=96.67  E-value=0.011  Score=44.09  Aligned_cols=69  Identities=17%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|-||.++|+.+.-....++||.+|-+-+... .|.+....+|+.+  .+.  +  +.+.||.+.|+. +++|++.+
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~~--G~~--L--~d~~~L~~~~i~~~~~l~l~~   71 (74)
T cd01807           2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-LNVPEEQQRLLFK--GKA--L--ADDKRLSDYSIGPNAKLNLVV   71 (74)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCCHHHCCCCCCCEEEEEE
Confidence            68899999999999999999999999999876 4677788899854  543  5  447999999998 57776654

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.63  E-value=0.021  Score=50.61  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEE------EEeecCChh--HH-----------------
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIF------WQVYDDTSE--GK-----------------  127 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~------w~~~~~s~e--g~-----------------  127 (342)
                      .+.-.||..||++..+||.+|..      ..|.+..+=..+|.+      .+++.++..  ..                 
T Consensus        54 ~~~l~GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~  127 (184)
T TIGR01626        54 SAELAGKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS  127 (184)
T ss_pred             HHHcCCCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence            34445999999999999999987      455555554456777      666665421  11                 


Q ss_pred             --------HHHHhCCCCCCcEE-EEEeCCCCceEEEEeCCCChHHHHH
Q 019378          128 --------KVCTYYKLDSIPVV-LVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       128 --------~~~~~y~v~~~P~l-~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                              .++..|++..+|.. +|||+ .|.++.+..|.++.+++-.
T Consensus       128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       128 QVVLDDKGAVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             eEEECCcchHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH
Confidence                    13457788899877 89996 7999999999988877644

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.62  E-value=0.023  Score=48.20  Aligned_cols=92  Identities=9%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCC
Q 019378           76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKL  135 (342)
Q Consensus        76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v  135 (342)
                      -.+|++||+|... +|..|......+  +....++-++++.++.+..++.+.                   ..+++.|++
T Consensus        28 ~~gk~~ll~f~~~~~~p~C~~~~~~l--~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  105 (154)
T PRK09437         28 FQGQRVLVYFYPKAMTPGCTVQACGL--RDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV  105 (154)
T ss_pred             hCCCCEEEEEECCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence            3567888888865 566676432211  111222223345555555544332                   234456665


Q ss_pred             CCC------------cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          136 DSI------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       136 ~~~------------P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ...            |+.+|||+ .|.++..+.|+...+. ++.+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~-~~~~~~~  151 (154)
T PRK09437        106 WGEKKFMGKTYDGIHRISFLIDA-DGKIEHVFDKFKTSNH-HDVVLDY  151 (154)
T ss_pred             CcccccccccccCcceEEEEECC-CCEEEEEEcCCCcchh-HHHHHHH
Confidence            332            77889997 6899999998654443 4444433

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=96.59  E-value=0.023  Score=42.56  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      .+|.|+-..|+.+...+..++||.+|.+-+.... +++...-+|+  |..+.  +  +.+.||++.|+. +++|++-+
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi--~~Gk~--L--~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLK--KWYTI--F--KDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEE--eCCcC--C--CCCCCHHHcCCCCCCEEEEEe
Confidence            5788999999999999999999999999998764 6777778887  44553  4  457899999998 56677654

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=96.57  E-value=0.032  Score=47.44  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=28.9

Q ss_pred             CCCcE----EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          136 DSIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       136 ~~~P~----l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ..+|.    .+|||+ .|.++.++.|.++++++...|...
T Consensus       114 ~~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       114 KKEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence            35787    899997 799999999999999887777653

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.50  E-value=0.019  Score=50.02  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             HHHHHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH------------------------
Q 019378           72 DAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG------------------------  126 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg------------------------  126 (342)
                      ..+.-.+|+++|+|+ ..||..|..-...+  +....++-+.++.++.++.+..+.                        
T Consensus        23 ~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D  100 (173)
T cd03015          23 SLSDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLAD  100 (173)
T ss_pred             ehHHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEEC
Confidence            334446899999999 68899998753322  112222333466667666655421                        


Q ss_pred             --HHHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378          127 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP  170 (342)
Q Consensus       127 --~~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~  170 (342)
                        ..+++.|++.      ..|+.+|||+ .|.++..+.+..    +.++++..|..
T Consensus       101 ~~~~~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015         101 PKKKISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             CchhHHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence              1234566664      5789999998 689888876543    34566665543

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=96.48  E-value=0.04  Score=48.96  Aligned_cols=90  Identities=14%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-----------------------HHHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-----------------------~~~~~~  132 (342)
                      .+||++|+|+ .++|+.|..=...+  ++...++-..++.+++++.++.+.                       ..+++.
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~  107 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  107 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence            6899999999 88999988733221  223333444577888888777544                       245677


Q ss_pred             CCC----CCC--cEEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 019378          133 YKL----DSI--PVVLVVDPITGQKMRSWCGM----VQPESLLEDLV  169 (342)
Q Consensus       133 y~v----~~~--P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~  169 (342)
                      |++    ..+  |..+|||| .|.+...+...    .+.++++..|.
T Consensus       108 ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~  153 (187)
T PRK10382        108 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIK  153 (187)
T ss_pred             cCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            777    345  99999998 68887665432    36777776663

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.47  E-value=0.025  Score=51.13  Aligned_cols=83  Identities=11%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             HHcCCeEEEE-EecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378           75 SVQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        75 k~~~K~LlV~-l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~  151 (342)
                      +...+++.|. |+++||..|..+.      +.+..+..  .+..+..+|.+  +...++..|++.++|+++|..  .|..
T Consensus       129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~--~~~~  198 (215)
T TIGR02187       129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--ENPDLAEKYGVMSVPKIVINK--GVEE  198 (215)
T ss_pred             HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--CCHHHHHHhCCccCCEEEEec--CCEE
Confidence            3456676665 8899999999875      23333333  34555555554  455688999999999999864  3542


Q ss_pred             EEEEeCCCChHHHHHHHHh
Q 019378          152 MRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       152 l~~~~G~~~~~~~l~~L~~  170 (342)
                         +.|..+.++|.+.|..
T Consensus       199 ---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       199 ---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             ---EECCCCHHHHHHHHHh
Confidence               7898888888877654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PTZ00044 ubiquitin; Provisional

Probab=96.44  E-value=0.017  Score=43.13  Aligned_cols=69  Identities=19%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|-||.++|+.+.-++..++||..|-.-+... .+.+....+|+.  -.+.  +  +.+.||.+.|+. +.+|.+.+
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~--L--~d~~~l~~~~i~~~~~i~l~~   71 (76)
T PTZ00044          2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEK-EGIDVKQIRLIY--SGKQ--M--SDDLKLSDYKVVPGSTIHMVL   71 (76)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEE--c--cCCCcHHHcCCCCCCEEEEEE
Confidence            57899999999999999999999999999886 466777888884  3553  4  457889999998 56777654

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=96.40  E-value=0.015  Score=43.16  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=53.5

Q ss_pred             EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +.||+++|+.+.-.+..++||.+|-..+... .|.+....+|+..  .+.  |  +.+.||.++|+. +.+|.|
T Consensus         1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~~--G~~--L--~D~~~l~~~~i~~~~tv~~   67 (70)
T cd01794           1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-EGVDPCCQRWFFS--GKL--L--TDKTRLQETKIQKDYVVQV   67 (70)
T ss_pred             CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEE
Confidence            3589999999999999999999999999875 5677777888743  543  4  568999999998 566655

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]

Probab=96.37  E-value=0.0045  Score=62.23  Aligned_cols=94  Identities=17%  Similarity=0.264  Sum_probs=74.8

Q ss_pred             HHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHH-
Q 019378           51 LASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKK-  128 (342)
Q Consensus        51 l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~-  128 (342)
                      |..-|.|-.   +.-.=++|.+.|+.++||+++-+--+.|.-|++|.+.-|.|++...++++|||...+|-.. ++--+ 
T Consensus        88 lqhaynpvd---wypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~  164 (786)
T KOG2244|consen   88 LQHAYNPVD---WYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKL  164 (786)
T ss_pred             hhhccCCcc---cCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHH
Confidence            355555543   3345589999999999999999999999999999999999999999999999999876532 22222 


Q ss_pred             ----HHHhCCCCCCcEEEEEeCC
Q 019378          129 ----VCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus       129 ----~~~~y~v~~~P~l~ii~p~  147 (342)
                          +...++-..+|.-+++.|.
T Consensus       165 YM~Fv~assg~GGWPmsV~LTPd  187 (786)
T KOG2244|consen  165 YMAFVVASSGGGGWPMSVFLTPD  187 (786)
T ss_pred             HHHHHHhccCCCCCceeEEeCCC
Confidence                2345677889999999984

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.34  E-value=0.023  Score=42.62  Aligned_cols=69  Identities=19%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC-
Q 019378           83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM-  158 (342)
Q Consensus        83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~-  158 (342)
                      |.|+++||.+|+.+.      +.+.+++.+   .+.+..++  +.+   .+..|++.+.|+++|    +|+.+  +.|. 
T Consensus         3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~~~v~--~~~---~a~~~~v~~vPti~i----~G~~~--~~G~~   65 (76)
T TIGR00412         3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEFEKVT--DMN---EILEAGVTATPGVAV----DGELV--IMGKI   65 (76)
T ss_pred             EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEEEEeC--CHH---HHHHcCCCcCCEEEE----CCEEE--EEecc
Confidence            778899999999984      345555543   45665544  322   256799999999998    57766  7785 


Q ss_pred             CChHHHHHHH
Q 019378          159 VQPESLLEDL  168 (342)
Q Consensus       159 ~~~~~~l~~L  168 (342)
                      .+.+++.+.|
T Consensus        66 ~~~~~l~~~l   75 (76)
T TIGR00412        66 PSKEEIKEIL   75 (76)
T ss_pred             CCHHHHHHHh
Confidence            4446665443

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR03137 AhpC peroxiredoxin

Probab=96.31  E-value=0.023  Score=50.32  Aligned_cols=90  Identities=16%  Similarity=0.138  Sum_probs=58.9

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-----------------------HHHHH
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-----------------------KKVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-----------------------~~~~~  131 (342)
                      -.|||++|+|+ ..||+.|..-...+  ++...++-+.++.+++++.++.+.                       ..+++
T Consensus        29 ~~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~  106 (187)
T TIGR03137        29 VKGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR  106 (187)
T ss_pred             HCCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence            46899999999 89999998743221  112233334577777777766432                       23456


Q ss_pred             hCCCC------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHH
Q 019378          132 YYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDL  168 (342)
Q Consensus       132 ~y~v~------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L  168 (342)
                      .|++.      ..|+.+|||+ +|.+...+.+.    .+.++++..|
T Consensus       107 ~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l  152 (187)
T TIGR03137       107 NFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKI  152 (187)
T ss_pred             HhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHH
Confidence            77764      3699999997 68888776442    2566676655

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd01803 Ubiquitin Ubiquitin

Probab=96.27  E-value=0.026  Score=41.93  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=55.1

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|-||.++|+.+.-.+..++||..|..-+.... +.+....+|+.  ..+.  +  +.+.||.+.|+. +++|.+.+
T Consensus         2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-g~~~~~q~L~~--~g~~--L--~d~~~L~~~~i~~~~~i~l~~   71 (76)
T cd01803           2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLVL   71 (76)
T ss_pred             EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHh-CCCHHHeEEEE--CCEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence            588999999999999999999999999998863 66666778874  4543  4  457899999998 56676654

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>PRK15000 peroxidase; Provisional

Probab=96.24  E-value=0.033  Score=49.99  Aligned_cols=90  Identities=9%  Similarity=0.020  Sum_probs=61.0

Q ss_pred             cCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .+||++|+|+.. +|+.|..=....  +....+|-+.++.+++++.++.+..                          .+
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i  110 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI  110 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence            689999999994 789888743221  2223334445788888888865432                          23


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      ++.|++.      .+|..+|||| .|.+...+.|..    +.++++..|.
T Consensus       111 a~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~  159 (200)
T PRK15000        111 QKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVD  159 (200)
T ss_pred             HHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            4567775      6899999998 688887776643    5667766554

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=96.11  E-value=0.041  Score=41.64  Aligned_cols=68  Identities=13%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .+|.||..+|+...-.+..++||.+|..-+.... +.+....+|+  |..+.  +. | + ||+++|+. +++|.+.
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~--~~Gk~--L~-d-~-~L~~~gi~~~~~i~l~   70 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALL--HRETR--LS-S-G-KLQDLGLGDGSKLTLV   70 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEE--ECCcC--CC-C-C-cHHHcCCCCCCEEEEE
Confidence            4788999999999999999999999999998764 6666777786  44553  53 3 4 89999998 5666553

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=96.10  E-value=0.029  Score=41.33  Aligned_cols=67  Identities=19%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      |-||.++|+.+.-....+++|..|-..+... .|.+.....|+.+  .+.  |  +.+.||.++|+. +++|.++
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~q~Li~~--G~~--L--~d~~~l~~~~i~~~stl~l~   68 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKR-QGVPPDQLRVIFA--GKE--L--RNTTTIQECDLGQQSILHAV   68 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHH-HCCCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            4589999999999999999999999999886 4667778888754  543  4  557999999998 5777664

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=96.04  E-value=0.037  Score=44.63  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             cCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH-------------------HHHHHh
Q 019378           77 QDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG-------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg-------------------~~~~~~  132 (342)
                      .+||++|+|... +|..|..-..      .+.++.    ..++-++.+..++.+.                   ..++..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   97 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELP------ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA   97 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred             CCCcEEEEEeCccCccccccchh------HHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence            679999999999 9999987643      333333    2367777778877653                   234567


Q ss_pred             CCCC------CCcEEEEEeCCCCceEE
Q 019378          133 YKLD------SIPVVLVVDPITGQKMR  153 (342)
Q Consensus       133 y~v~------~~P~l~ii~p~tG~~l~  153 (342)
                      |++.      .+|.++|||+ .|.+++
T Consensus        98 ~~~~~~~~~~~~p~~~lid~-~g~I~~  123 (124)
T PF00578_consen   98 FGIEDEKDTLALPAVFLIDP-DGKIRY  123 (124)
T ss_dssp             TTCEETTTSEESEEEEEEET-TSBEEE
T ss_pred             cCCccccCCceEeEEEEECC-CCEEEe
Confidence            7776      8999999997 677654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=95.87  E-value=0.046  Score=40.79  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      |-||.++|+.+.-....++||..|.+-+... .+.+...+.|+.+  .+.  |  ..+.||.+.|+. +++|.+.+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--G~~--L--~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-ERVQADQFWLSFE--GRP--M--EDEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence            4689999999999999999999999999875 4777788999854  443  5  346999999998 56676554

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=95.83  E-value=0.025  Score=45.77  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             CeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC-C-----CCCcCeEEEecCCCCccccCCCcCCChhhcCC
Q 019378          263 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE-G-----SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL  332 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~-~-----~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL  332 (342)
                      ..+.|+|||+||+-| -.+|..++||..|-.-|....+ +     +....-+|+..  .+.  |  ..++||+++++
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys--GKi--L--eD~~TL~d~~~   73 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA--GKI--L--ENSKTVGECRS   73 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC--Cee--c--CCCCcHHHhCC
Confidence            468899999999743 4789999999999999987643 2     33455677764  443  4  56899999993

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=95.74  E-value=0.07  Score=39.82  Aligned_cols=67  Identities=13%  Similarity=0.169  Sum_probs=52.4

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +|.||.++|+.+.-....++||..|...+.... +.  +.....|+.  .++.  |  +.+.||.++|+.+ ++|++
T Consensus         2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~-~i~~~~~~q~L~~--~G~~--L--~d~~~L~~~~i~~~~~i~~   71 (77)
T cd01805           2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEK-GCDYPPEQQKLIY--SGKI--L--KDDTTLEEYKIDEKDFVVV   71 (77)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCCChhHeEEEE--CCEE--c--cCCCCHHHcCCCCCCEEEE
Confidence            588999999999999999999999999998753 54  566677764  3553  5  4468999999984 55544

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=95.70  E-value=0.11  Score=44.92  Aligned_cols=89  Identities=16%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             HHHHcCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh---------------------HHH
Q 019378           73 AASVQDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKK  128 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e---------------------g~~  128 (342)
                      .+.-.+|+++|+++..| |..|..--.      .+.++.+  .++.+++++.+++.                     +..
T Consensus        39 l~~~~Gk~vvl~f~~s~~cp~C~~e~~------~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~  112 (167)
T PRK00522         39 LADFAGKRKVLNIFPSIDTGVCATSVR------KFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHS  112 (167)
T ss_pred             hHHhCCCEEEEEEEcCCCCCccHHHHH------HHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccH
Confidence            33346899999999998 888887422      2222222  25666666665532                     224


Q ss_pred             HHHhCCCCCCc---------EEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 019378          129 VCTYYKLDSIP---------VVLVVDPITGQKMRSWCGM-----VQPESLLEDL  168 (342)
Q Consensus       129 ~~~~y~v~~~P---------~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L  168 (342)
                      ++..|++...|         +.+|||+ +|.++..+.+.     .+.++++..|
T Consensus       113 ~~~~~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l  165 (167)
T PRK00522        113 FGKAYGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL  165 (167)
T ss_pred             HHHHhCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence            45666665555         8888886 68877776442     2445555443

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=95.69  E-value=0.085  Score=42.28  Aligned_cols=72  Identities=8%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +.-+|-||..+|+.+.-....++||..|-.-|... .|.+....+|+.+  .+.  |  +.+.||++.|+. +++|.+.+
T Consensus        26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~stL~l~~   98 (103)
T cd01802          26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-EGIPVAQQHLIWN--NME--L--EDEYCLNDYNISEGCTLKLVL   98 (103)
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence            46899999999999999999999999999999875 5777788999864  443  4  557899999998 67787764

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=95.67  E-value=0.078  Score=39.16  Aligned_cols=69  Identities=10%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      ++|-||.++|+ ..-....++||..|..-+.... +.+...++|+.  ..+.  |  +.+.||.++|+. +++|.+.+
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~-~i~~~~~~Li~--~Gk~--L--~d~~tL~~~~i~~~stl~l~~   70 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKF-KANQEQLVLIF--AGKI--L--KDTDTLTQHNIKDGLTVHLVI   70 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHh-CCCHHHEEEEE--CCeE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence            36889999996 4778889999999999998764 66677788864  4553  5  446899999998 67787765

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=95.57  E-value=0.079  Score=38.77  Aligned_cols=68  Identities=19%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      ++|.||.. |+....++..++||..|.+-+... .+.+....+|...  .+.  +  +.+.||.++|+.+ .+|.|.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~~--g~~--l--~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-TGVEPRDQKLIFK--GKE--R--DDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-hCCChHHeEEeeC--Ccc--c--CccCcHHHcCCCCCCEEEEe
Confidence            47889996 888899999999999999999875 4677778888754  332  4  3478999999984 556553

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=95.56  E-value=0.17  Score=39.29  Aligned_cols=81  Identities=10%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             HHHcCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           74 ASVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        74 Ak~~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      ++.-.++ =+..|++++|.+|....+-+   +++.. .+.++-+..+|++  +...++..|++.++|+++|    +|+.+
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~---~~l~~-~~~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi----dG~~~   76 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQAL---NLMAV-LNPNIEHEMIDGA--LFQDEVEERGIMSVPAIFL----NGELF   76 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHH---HHHHH-HCCCceEEEEEhH--hCHHHHHHcCCccCCEEEE----CCEEE
Confidence            3344455 45566678999999874322   33332 2234666655654  3456889999999999964    47766


Q ss_pred             EEEeCCCChHHHHH
Q 019378          153 RSWCGMVQPESLLE  166 (342)
Q Consensus       153 ~~~~G~~~~~~~l~  166 (342)
                      .  .|..+.++++.
T Consensus        77 ~--~G~~~~~e~~~   88 (89)
T cd03026          77 G--FGRMTLEEILA   88 (89)
T ss_pred             E--eCCCCHHHHhh
Confidence            4  48777777653

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK13190 putative peroxiredoxin; Provisional

Probab=95.56  E-value=0.11  Score=46.67  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=56.7

Q ss_pred             HcCCeEEEE-EecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHH
Q 019378           76 VQDKWLLVN-LQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV  129 (342)
Q Consensus        76 ~~~K~LlV~-l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~  129 (342)
                      -.+||++|+ +..++|+.|..=...+  .....++-+.++.+++++.++.+.                         ..+
T Consensus        25 ~~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~i  102 (202)
T PRK13190         25 YKGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKEL  102 (202)
T ss_pred             hCCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHH
Confidence            368888775 6788999987532211  111122223466666766665321                         234


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEE----eCCCChHHHHHHHHhh
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSW----CGMVQPESLLEDLVPF  171 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~----~G~~~~~~~l~~L~~~  171 (342)
                      ++.|++.      .+|.++|||| .|.+....    .+..+.++++..|...
T Consensus       103 a~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        103 AREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             HHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            5677773      4899999998 68776555    2335778887766544

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=95.54  E-value=0.086  Score=38.82  Aligned_cols=68  Identities=26%  Similarity=0.335  Sum_probs=52.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ++|.++..+|+.+.-+-..+++++.|++...... +.+. ..+.|.-.  +..  +  +.+.|++++|+. +..|.|
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~-~i~~~~~~~l~fd--G~~--L--~~~~T~~~~~ied~d~Idv   70 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKK-GIPPEESIRLIFD--GKR--L--DPNDTPEDLGIEDGDTIDV   70 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHH-TTTT-TTEEEEET--TEE--E---TTSCHHHHT-STTEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh-CCCccceEEEEEC--CEE--c--CCCCCHHHCCCCCCCEEEE
Confidence            4789999999999999999999999999876653 5556 78888764  432  4  678999999998 555554

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=95.53  E-value=0.064  Score=39.09  Aligned_cols=63  Identities=21%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          270 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       270 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      |.++|+.+.-.+..+++|.+|-.-|.... +.+.....|+.+  .+.  +  +.+.||.+.|+.+ ++|.+
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~~~~~~~~L~~~--G~~--L--~d~~tL~~~~i~~~~~I~l   64 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEET-GIPPEQQRLIYN--GKE--L--DDDKTLSDYGIKDGSTIHL   64 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHH-TSTGGGEEEEET--TEE--E--STTSBTGGGTTSTTEEEEE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhccccc-ccccccceeeee--eec--c--cCcCcHHHcCCCCCCEEEE
Confidence            56899999999999999999999998865 567888999875  443  4  7799999999995 55554

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.084  Score=52.01  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=73.1

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~  151 (342)
                      ......++..+|.+.++||..|+.+-....   .+...++.  +...+.++-.+-..+++.|++..||++.+..|  |..
T Consensus        41 ~~~~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~--~~~  113 (383)
T KOG0191|consen   41 DFLLKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP--GKK  113 (383)
T ss_pred             HHhhccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcC--CCc
Confidence            345577899999999999999999964333   56566666  55556888888899999999999999999997  444


Q ss_pred             EEEEeCCCChHHHHHHHHhhhhc
Q 019378          152 MRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       152 l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .....|..+.+.+.+.+...++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~  136 (383)
T KOG0191|consen  114 PIDYSGPRNAESLAEFLIKELEP  136 (383)
T ss_pred             eeeccCcccHHHHHHHHHHhhcc
Confidence            44566777777777766655553

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=95.37  E-value=0.08  Score=39.23  Aligned_cols=67  Identities=13%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             EEEECC-CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          267 VGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       267 i~iRlP-~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      |-|+++ +|+.+.-....+++|..|-..+... .|.+....+|+.+  .+.  | .|...||+++|+.+ .+|++
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-~gip~~~q~Li~~--Gk~--L-~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAE-SGIPASQQQLIYN--GRE--L-VDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--c-cCCcccHHHcCCCCCCEEEE
Confidence            457999 9999999999999999999999875 5777778888865  543  5 35568999999985 44554

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=95.35  E-value=0.1  Score=42.48  Aligned_cols=64  Identities=22%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             eeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCC------CCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378          264 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGS------EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA  333 (342)
Q Consensus       264 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~------~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~  333 (342)
                      .+.|+|||.||+ +..-+|..+.||.+|-+.|....+..      .....+|+..  +|.  |  +.+.||.++++.
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--Gri--L--~d~~tL~~~~~~   72 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--GRI--L--EDNKTLSDCRLP   72 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--TEE--E---SSSBTGGGT--
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--Cee--c--CCcCcHHHhCCC
Confidence            478999999999 99999999999999999999876432      1345778775  443  4  578999999886

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=95.31  E-value=0.13  Score=45.94  Aligned_cols=90  Identities=16%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             HcCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HH
Q 019378           76 VQDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KK  128 (342)
Q Consensus        76 ~~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~  128 (342)
                      -.+||++|+|+. ++|+.|..-... | +....++-..++-+++++.++...                          ..
T Consensus        34 ~~Gk~~lL~F~p~~~~~~C~~e~~~-l-~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~  111 (199)
T PTZ00253         34 YKGKWVVLFFYPLDFTFVCPTEIIQ-F-SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS  111 (199)
T ss_pred             HCCCEEEEEEEcCCCCCcCHHHHHH-H-HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence            358999999995 567777753321 1 222333334577777777765432                          23


Q ss_pred             HHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHH
Q 019378          129 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDL  168 (342)
Q Consensus       129 ~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L  168 (342)
                      +++.|++.      .+|..+|||| .|.+...+.+..    +.++++..|
T Consensus       112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~~~~~~r~~~e~l~~l  160 (199)
T PTZ00253        112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVNDMPVGRNVEEVLRLL  160 (199)
T ss_pred             HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHH
Confidence            56777773      4799999998 688877666543    344555444

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.057  Score=54.59  Aligned_cols=100  Identities=11%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      -.++|++.+    ..+.++||-|+.+||.-|+.+-...=.-.....-.....-+-++|.+  +...+|+.|.|..||++-
T Consensus        31 t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--~~~~~~~~y~v~gyPTlk  104 (493)
T KOG0190|consen   31 TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--EESDLASKYEVRGYPTLK  104 (493)
T ss_pred             ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--hhhhhHhhhcCCCCCeEE
Confidence            356777666    46799999999999999999854432222221111124555555554  448999999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      |.-  +|.......|.-+++.++..|..
T Consensus       105 iFr--nG~~~~~Y~G~r~adgIv~wl~k  130 (493)
T KOG0190|consen  105 IFR--NGRSAQDYNGPREADGIVKWLKK  130 (493)
T ss_pred             EEe--cCCcceeccCcccHHHHHHHHHh
Confidence            985  68766677888888888776653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=95.15  E-value=0.19  Score=41.43  Aligned_cols=80  Identities=11%  Similarity=0.069  Sum_probs=47.8

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-H-------------------HHHHhCCC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-K-------------------KVCTYYKL  135 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-~-------------------~~~~~y~v  135 (342)
                      .+|+++|++. +.+|..|..-...+  +....++=..++.++.+..++.+. .                   .++..|++
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~   98 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV   98 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence            6888888888 67898887754332  111222213456666666655432 1                   23445555


Q ss_pred             CCC---------cEEEEEeCCCCceEEEEeCCC
Q 019378          136 DSI---------PVVLVVDPITGQKMRSWCGMV  159 (342)
Q Consensus       136 ~~~---------P~l~ii~p~tG~~l~~~~G~~  159 (342)
                      ...         |+++|||+ +|.++.++.|..
T Consensus        99 ~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~~  130 (140)
T cd02971          99 LIEKSAGGGLAARATFIIDP-DGKIRYVEVEPL  130 (140)
T ss_pred             ccccccccCceeEEEEEECC-CCcEEEEEecCC
Confidence            444         47888886 688888877743

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=94.88  E-value=0.14  Score=42.59  Aligned_cols=75  Identities=11%  Similarity=0.063  Sum_probs=48.0

Q ss_pred             cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378           77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~  132 (342)
                      .+|+++|+|+..+ |..|..-.      +.+.++..  .++.++.++.++.+.                     ..++..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~   98 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQT------KRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA   98 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHH------HHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence            5899999999988 58887643      23333332  267788887765431                     234445


Q ss_pred             CCCCC------CcEEEEEeCCCCceEEEEeCC
Q 019378          133 YKLDS------IPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       133 y~v~~------~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      |++..      .|+.+|||+ .|.++..+.|.
T Consensus        99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~~  129 (143)
T cd03014          99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELVP  129 (143)
T ss_pred             hCCeeccCCccceEEEEEcC-CCeEEEEEECC
Confidence            55532      578888886 67777776653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PTZ00256 glutathione peroxidase; Provisional

Probab=94.76  E-value=0.38  Score=42.27  Aligned_cols=38  Identities=18%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             CCCCcE---EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          135 LDSIPV---VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       135 v~~~P~---l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +..+|+   .+|||+ .|.++.++.|.++++.+...|...+.
T Consensus       142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll~  182 (183)
T PTZ00256        142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLLN  182 (183)
T ss_pred             CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHhc
Confidence            446784   589996 69999999999998888777766553

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=94.76  E-value=0.15  Score=42.22  Aligned_cols=22  Identities=18%  Similarity=-0.007  Sum_probs=18.5

Q ss_pred             HcCCeEEEEEecCCCcc-hhhhh
Q 019378           76 VQDKWLLVNLQSTKEFS-SHMLN   97 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~-~~~f~   97 (342)
                      -.+||++|+|...||.. |....
T Consensus        20 ~~gk~~vl~f~~~~C~~~C~~~l   42 (142)
T cd02968          20 LKGKPVLVYFGYTHCPDVCPTTL   42 (142)
T ss_pred             hCCCEEEEEEEcCCCcccCHHHH
Confidence            36899999999999997 97643

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=94.38  E-value=0.44  Score=42.18  Aligned_cols=71  Identities=13%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecC--------C-hhHHHHHH-hCCCC
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDD--------T-SEGKKVCT-YYKLD  136 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~--------s-~eg~~~~~-~y~v~  136 (342)
                      +..+.=.||++||++..++|..|..+.       .+.++.+    ..|.++++..+        + .+...+++ .|++ 
T Consensus        18 v~Ls~~~GKvvLVvf~AS~C~~~~q~~-------~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-   89 (183)
T PRK10606         18 TTLEKYAGNVLLIVNVASKCGLTPQYE-------QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-   89 (183)
T ss_pred             EeHHHhCCCEEEEEEEeCCCCCcHHHH-------HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-
Confidence            344555689999999999999987653       3444433    46888887653        2 34556775 5766 


Q ss_pred             CCcEEEEEeCCCCc
Q 019378          137 SIPVVLVVDPITGQ  150 (342)
Q Consensus       137 ~~P~l~ii~p~tG~  150 (342)
                      .||.+.=++. +|+
T Consensus        90 ~Fpv~~k~dv-nG~  102 (183)
T PRK10606         90 TFPMFSKIEV-NGE  102 (183)
T ss_pred             CceeEEEEcc-CCC
Confidence            5787776774 554

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.15  E-value=0.13  Score=48.60  Aligned_cols=92  Identities=18%  Similarity=0.332  Sum_probs=66.4

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCC--HHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE-E
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWAN--EAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR-S  154 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~--~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~-~  154 (342)
                      +..++|+|+.+||.-|+++.. ++..  ..+++-.=++=|+|+ .++..---.+++.|.+..||++=|+-  +|+.+. -
T Consensus        13 ~elvfv~FyAdWCrFSq~L~p-iF~EAa~~~~~e~P~~kvvwg-~VDcd~e~~ia~ky~I~KyPTlKvfr--nG~~~~rE   88 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKP-IFEEAAAKFKQEFPEGKVVWG-KVDCDKEDDIADKYHINKYPTLKVFR--NGEMMKRE   88 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhH-HHHHHHHHHHHhCCCcceEEE-EcccchhhHHhhhhccccCceeeeee--ccchhhhh
Confidence            678999999999999998853 3322  223333333667776 44444445689999999999999985  799886 5


Q ss_pred             EeCCCChHHHHHHHHhhhh
Q 019378          155 WCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       155 ~~G~~~~~~~l~~L~~~l~  173 (342)
                      ..|.-+.+.|++.+..-++
T Consensus        89 YRg~RsVeaL~efi~kq~s  107 (375)
T KOG0912|consen   89 YRGQRSVEALIEFIEKQLS  107 (375)
T ss_pred             hccchhHHHHHHHHHHHhc
Confidence            7888888888876655444

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=94.14  E-value=0.35  Score=45.29  Aligned_cols=90  Identities=14%  Similarity=0.026  Sum_probs=58.7

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~  129 (342)
                      .+||++++++ .++|+.|..=....  ++...++-..++.++++..++...                          ..+
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i  174 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV  174 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence            6789999999 68999998732221  122233334466677777666421                          345


Q ss_pred             HHhCCCC-----CCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHH
Q 019378          130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLV  169 (342)
Q Consensus       130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~  169 (342)
                      ++.|++.     ..|.++|||| .|.+...+..    .-+.++++..|.
T Consensus       175 akayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~  222 (261)
T PTZ00137        175 SKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFD  222 (261)
T ss_pred             HHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            6778874     5899999998 6888766532    236777776554

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.01  E-value=0.57  Score=38.79  Aligned_cols=48  Identities=8%  Similarity=-0.075  Sum_probs=28.9

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK  127 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~  127 (342)
                      ++.||+++.+.||..|..--..+  +....++-..++.++.+..++.+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l--~~~~~~~~~~~v~vv~V~~~~~~~~   71 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRAL--SKLLPELDALGVELVAVGPESPEKL   71 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHH--HHHHHHHHhcCeEEEEEeCCCHHHH
Confidence            34555555689999998764332  1112222235788888888776543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=93.99  E-value=0.48  Score=39.51  Aligned_cols=83  Identities=11%  Similarity=0.060  Sum_probs=44.0

Q ss_pred             HHHHcC-CeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH---------------------HHH
Q 019378           73 AASVQD-KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KKV  129 (342)
Q Consensus        73 ~Ak~~~-K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg---------------------~~~  129 (342)
                      .+.-.+ |+++|++. ..||..|..-...+  .....++-+.++.++.++.++.+.                     ..+
T Consensus        22 l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~   99 (149)
T cd03018          22 LSEFRGRKPVVLVFFPLAFTPVCTKELCAL--RDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEV   99 (149)
T ss_pred             HHHHcCCCeEEEEEeCCCCCccHHHHHHHH--HHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHH
Confidence            333345 88877776 78888887432211  011111112344455544444322                     334


Q ss_pred             HHhCCCCC----C--cEEEEEeCCCCceEEEEeCC
Q 019378          130 CTYYKLDS----I--PVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       130 ~~~y~v~~----~--P~l~ii~p~tG~~l~~~~G~  158 (342)
                      +..|++..    +  |+.+|||+ +|+++..+.|.
T Consensus       100 ~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~  133 (149)
T cd03018         100 AKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD  133 (149)
T ss_pred             HHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence            45566542    2  37788886 67877777764

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK13191 putative peroxiredoxin; Provisional

Probab=93.92  E-value=0.41  Score=43.40  Aligned_cols=91  Identities=10%  Similarity=0.077  Sum_probs=57.3

Q ss_pred             cCCeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------------HHH
Q 019378           77 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------------KVC  130 (342)
Q Consensus        77 ~~K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------------~~~  130 (342)
                      .+||++| ++-.++|+.|..-...+  ++...+|-+.++.+++++.++....                         .++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia  109 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA  109 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence            5788776 55678898888743221  2223344445777777777765532                         345


Q ss_pred             HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHh
Q 019378          131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP  170 (342)
Q Consensus       131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~  170 (342)
                      +.|++.       ..|.++|||| .|.+...+.+.    -+.+++|..|..
T Consensus       110 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a  159 (215)
T PRK13191        110 KRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA  159 (215)
T ss_pred             HHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            567652       3799999998 68877665443    256777766643

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=93.87  E-value=0.15  Score=34.23  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=43.9

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHH-HHhCCCCCCcEEEEEeC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV-CTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~-~~~y~v~~~P~l~ii~p  146 (342)
                      |++++..+|..|..+.. ++...   ...+.++.+..++.+....... ...+++..+|++.++++
T Consensus         1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~   62 (69)
T cd01659           1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP   62 (69)
T ss_pred             CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence            46788889999999853 22221   4556788888888876554332 35789999999999986

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=93.84  E-value=0.41  Score=36.22  Aligned_cols=69  Identities=20%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             EEEEECCCCce-EEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRR-MQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r-~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|-||.++|+. +.- ....++||..|-.-+... .|.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+.+
T Consensus         2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~~--Gk~--L--~D~~tL~~y~i~~~~~i~l~~   73 (78)
T cd01797           2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-FNVEPECQRLFYR--GKQ--M--EDGHTLFDYNVGLNDIIQLLV   73 (78)
T ss_pred             EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-hCCCHHHeEEEeC--CEE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence            57899999986 344 356789999999999875 4677788899864  443  4  558999999999 57776654

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>smart00213 UBQ Ubiquitin homologues

Probab=93.83  E-value=0.27  Score=34.68  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCc
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANA  335 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~  335 (342)
                      +|.||.++ +....++..+.||..|..-+.... +.+.....|+.+  .+.  +  +.+.||.++|+.++
T Consensus         2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~~~L~~~--g~~--L--~d~~tL~~~~i~~~   63 (64)
T smart00213        2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELT-GIPVEQQRLIYK--GKV--L--EDDRTLADYNIQDG   63 (64)
T ss_pred             EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CEE--C--CCCCCHHHcCCcCC
Confidence            68899999 578889999999999999998764 556666788754  432  4  34699999999754

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=93.78  E-value=0.44  Score=34.07  Aligned_cols=66  Identities=20%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      ||..+|+.+...+..+.||..|-.-+.... +.+.....|+.+  .+.  +  +.+.||.++|+. ++.|.|.+
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~-~~~~~~~~l~~~--g~~--l--~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKE-GVPPEQQRLIYA--GKI--L--KDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CcC--C--CCcCCHHHCCCCCCCEEEEEE
Confidence            577789999999999999999999998864 556666777443  332  4  557899999998 46677765

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=93.77  E-value=0.27  Score=45.73  Aligned_cols=92  Identities=11%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-----cEEEEEeec-C---------------------
Q 019378           70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYD-D---------------------  122 (342)
Q Consensus        70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-----~FV~w~~~~-~---------------------  122 (342)
                      ++.......|..++.|.+.+|..|+.|..+      +..+++.     +++.+.+-. +                     
T Consensus       109 ~i~~g~~~ak~~I~vFtDp~CpyC~kl~~~------l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~  182 (251)
T PRK11657        109 WILDGKADAPRIVYVFADPNCPYCKQFWQQ------ARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY  182 (251)
T ss_pred             CccccCCCCCeEEEEEECCCChhHHHHHHH------HHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence            455555677888999999999999999644      3333332     222222110 0                     


Q ss_pred             ---------------Chh-------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          123 ---------------TSE-------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       123 ---------------s~e-------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                                     +.+       ..++++.+++...|++++.|. +| .+..+.|+.++++|.+.|.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~-~G-~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDK-DG-TLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CC-CEEEecCCCCHHHHHHHhC
Confidence                           011       122456788999999999985 45 3556889999998877653

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=93.60  E-value=0.3  Score=37.96  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=39.6

Q ss_pred             eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEE
Q 019378          276 RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV  339 (342)
Q Consensus       276 r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v  339 (342)
                      .+++.|.+.|||..|-..+...+. . ...-+|-.-|=...+.+-.+...|++||||..+. |++
T Consensus        15 ~~t~~FSk~DTI~~v~~~~rklf~-i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli   77 (88)
T PF14836_consen   15 VLTKQFSKTDTIGFVEKEMRKLFN-I-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI   77 (88)
T ss_dssp             EEEEEE-TTSBHHHHHHHHHHHCT---TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred             HhHhhccccChHHHHHHHHHHHhC-C-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence            689999999999999999988653 2 5556775533222334335778999999999655 444

>PRK13189 peroxiredoxin; Provisional

Probab=93.52  E-value=0.32  Score=44.38  Aligned_cols=91  Identities=10%  Similarity=0.066  Sum_probs=54.8

Q ss_pred             cCCeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378           77 QDKWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC  130 (342)
Q Consensus        77 ~~K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~  130 (342)
                      .+||++| ++-.++|+.|..--..+  +....+|-+.++.+++++.++...                         ..++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia  111 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA  111 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence            5788776 45578999998632221  222233334566677776665432                         2345


Q ss_pred             HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHh
Q 019378          131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP  170 (342)
Q Consensus       131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~  170 (342)
                      +.|++.       .+|.++|||| .|.+...+.+.    .+.++++..|..
T Consensus       112 ~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a  161 (222)
T PRK13189        112 KKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA  161 (222)
T ss_pred             HHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            667753       5799999998 68876655432    346666665543

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=93.39  E-value=0.48  Score=43.50  Aligned_cols=88  Identities=11%  Similarity=0.117  Sum_probs=57.8

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChh---------------------
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSE---------------------  125 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~e---------------------  125 (342)
                      +.....++|..++.|.+++|+.|+.+..      ++.++.+.    .|+.|...-..++                     
T Consensus       100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~------~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~  173 (232)
T PRK10877        100 IVYKAPQEKHVITVFTDITCGYCHKLHE------QMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDA  173 (232)
T ss_pred             EEecCCCCCEEEEEEECCCChHHHHHHH------HHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHH
Confidence            3334557788999999999999999964      35565543    2333443111111                     


Q ss_pred             -----------------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          126 -----------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       126 -----------------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                                       ..++++.+++...|++++-   +|+.   +.|+.+++.|...|..
T Consensus       174 ~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~---~G~~---~~G~~~~~~L~~~l~~  229 (232)
T PRK10877        174 MKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLS---NGTL---VPGYQGPKEMKAFLDE  229 (232)
T ss_pred             HcCCCCCcccccchHHHhHHHHHHcCCccccEEEEc---CCeE---eeCCCCHHHHHHHHHH
Confidence                             1234567899999999854   3654   4899999998776653

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=93.32  E-value=0.62  Score=40.09  Aligned_cols=89  Identities=18%  Similarity=0.303  Sum_probs=53.6

Q ss_pred             HHcCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCce
Q 019378           75 SVQDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQK  151 (342)
Q Consensus        75 k~~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~  151 (342)
                      ...+++ ++++|...+......+...+   ..+..-.+++++|.-+|.+  ...+++..|++.  .+|.++|+++.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~~~  165 (184)
T PF13848_consen   91 FSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKGKY  165 (184)
T ss_dssp             HSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTSEE
T ss_pred             hcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCCcE
Confidence            344555 55566554444444443221   2333333556666666666  445578899886  899999999877664


Q ss_pred             EEEEeCCCChHHHHHHH
Q 019378          152 MRSWCGMVQPESLLEDL  168 (342)
Q Consensus       152 l~~~~G~~~~~~~l~~L  168 (342)
                      -..-.|.++++.+..-|
T Consensus       166 ~~~~~~~~~~~~i~~Fl  182 (184)
T PF13848_consen  166 YYLPEGEITPESIEKFL  182 (184)
T ss_dssp             EE--SSCGCHHHHHHHH
T ss_pred             EcCCCCCCCHHHHHHHh
Confidence            22237888887765544

...

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=93.26  E-value=0.42  Score=34.24  Aligned_cols=56  Identities=9%  Similarity=0.064  Sum_probs=37.2

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ++.++++||..|+.+.+ +|  +++.. ...++-+..+|++..  ..++..|++.++|+++|
T Consensus         3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence            46678899999998843 21  11111 123566776676543  34788999999999865

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=93.24  E-value=0.46  Score=42.57  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=52.9

Q ss_pred             cC-CeEEE-EEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHH
Q 019378           77 QD-KWLLV-NLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKV  129 (342)
Q Consensus        77 ~~-K~LlV-~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~  129 (342)
                      .+ ||++| ++-.++|+.|..-...+  +....++-+.++.+++++.++.+.                         ..+
T Consensus        23 ~g~k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~i  100 (203)
T cd03016          23 LGDSWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREV  100 (203)
T ss_pred             cCCCEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHH
Confidence            34 77655 55677898887743221  111222223467777777776432                         244


Q ss_pred             HHhCCCC--------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          130 CTYYKLD--------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       130 ~~~y~v~--------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      +..|++.        ..|.++|||| .|.+...+.|..    +.++++..|.
T Consensus       101 a~~yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~  151 (203)
T cd03016         101 AKLLGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD  151 (203)
T ss_pred             HHHcCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            5677763        2457999998 688776665533    4556655553

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=92.77  E-value=0.87  Score=33.77  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|-||.  ++.++-....++||.+|-.-|... .+.+.....|+.+  .+.  +  +.+.||+++|+. +++|.+.+
T Consensus         2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~Li~~--Gk~--L--~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01793           2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-EGIDVEDQVLLLA--GVP--L--EDDATLGQCGVEELCTLEVAG   69 (74)
T ss_pred             EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-hCCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEEE
Confidence            456676  466788899999999999999875 5667778888764  443  4  557999999998 57777654

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PRK13599 putative peroxiredoxin; Provisional

Probab=92.36  E-value=1  Score=40.83  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=51.4

Q ss_pred             cCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378           77 QDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC  130 (342)
Q Consensus        77 ~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~  130 (342)
                      .+||+ |+++-.++|+.|..-...+  +....+|-+.++.+++++.++.+.                         ..++
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va  104 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS  104 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence            46785 4566677888887632111  111122223456666666665432                         2345


Q ss_pred             HhCCCC-------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 019378          131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLV  169 (342)
Q Consensus       131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~  169 (342)
                      ..|++.       ..|+++|||| .|.+...+...    ...++++..|.
T Consensus       105 ~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~  153 (215)
T PRK13599        105 NQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALK  153 (215)
T ss_pred             HHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence            677762       5799999998 68876655322    24566665554

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=92.25  E-value=1.2  Score=31.69  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=43.5

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      +..++.++|..|+...          .++++ +.-+..+|++.  .....+...+++.++|++.+ +   |+.   +.| 
T Consensus         2 i~lf~~~~C~~C~~~~----------~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~-~---~~~---~~g-   63 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAK----------EYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI-G---HKI---IVG-   63 (74)
T ss_pred             EEEEcCCCChhHHHHH----------HHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE-C---CEE---Eee-
Confidence            4567778999999863          22332 33444456654  33455788899999999976 2   543   667 


Q ss_pred             CChHHHHHH
Q 019378          159 VQPESLLED  167 (342)
Q Consensus       159 ~~~~~~l~~  167 (342)
                      .+++.+.+.
T Consensus        64 ~~~~~i~~~   72 (74)
T TIGR02196        64 FDPEKLDQL   72 (74)
T ss_pred             CCHHHHHHH
Confidence            467666543

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd00196 UBQ Ubiquitin-like proteins

Probab=91.72  E-value=0.95  Score=30.29  Aligned_cols=64  Identities=23%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +++++|.....++..+.++..|...+.... +.....|.|..+.+..      ....++.+.++. +..|.+
T Consensus         2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~-~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~i~~   66 (69)
T cd00196           2 VKLNDGKTVELLVPSGTTVADLKEKLAKKL-GLPPEQQRLLVNGKIL------PDSLTLEDYGLQDGDELVL   66 (69)
T ss_pred             eEecCCCEEEEEcCCCCcHHHHHHHHHHHH-CcChHHeEEEECCeEC------CCCCcHHHcCCCCCCEEEE
Confidence            677899999999999999999999998865 4567789999876553      223344566666 444544

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=91.29  E-value=1.8  Score=32.17  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=40.3

Q ss_pred             EecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeC-CCChH
Q 019378           85 LQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG-MVQPE  162 (342)
Q Consensus        85 l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G-~~~~~  162 (342)
                      +.+++|..|..+-.      .+.+.+.+ + +-..+... .+...+ ..|++.+.|++ +||   |++  ++.| ..+.+
T Consensus         5 v~~~~C~~C~~~~~------~~~~~~~~~~-i~~ei~~~-~~~~~~-~~ygv~~vPal-vIn---g~~--~~~G~~p~~~   69 (76)
T PF13192_consen    5 VFSPGCPYCPELVQ------LLKEAAEELG-IEVEIIDI-EDFEEI-EKYGVMSVPAL-VIN---GKV--VFVGRVPSKE   69 (76)
T ss_dssp             EECSSCTTHHHHHH------HHHHHHHHTT-EEEEEEET-TTHHHH-HHTT-SSSSEE-EET---TEE--EEESS--HHH
T ss_pred             EeCCCCCCcHHHHH------HHHHHHHhcC-CeEEEEEc-cCHHHH-HHcCCCCCCEE-EEC---CEE--EEEecCCCHH
Confidence            35667999997642      23333332 3 33333332 444445 99999999999 454   664  3778 56677


Q ss_pred             HHHHHH
Q 019378          163 SLLEDL  168 (342)
Q Consensus       163 ~~l~~L  168 (342)
                      ++.+.|
T Consensus        70 el~~~l   75 (76)
T PF13192_consen   70 ELKELL   75 (76)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766544

...

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=91.22  E-value=0.51  Score=44.71  Aligned_cols=102  Identities=11%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      +..++++-...-|.++-|+ |.|+.+||.-|+.+. -||.  +|---+++. .-+-.+-.+-+.-..+++.+++..||+|
T Consensus        29 ~VeDLddkFkdnkdddiW~-VdFYAPWC~HCKkLe-PiWd--eVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI  104 (468)
T KOG4277|consen   29 AVEDLDDKFKDNKDDDIWF-VDFYAPWCAHCKKLE-PIWD--EVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI  104 (468)
T ss_pred             hhhhhhHHhhhcccCCeEE-EEeechhhhhccccc-chhH--HhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence            5566777777777777775 899999999999995 5663  344444432 1111122333444567899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      .++.   |.......|.-+.+.+++....+
T Consensus       105 k~~k---gd~a~dYRG~R~Kd~iieFAhR~  131 (468)
T KOG4277|consen  105 KFFK---GDHAIDYRGGREKDAIIEFAHRC  131 (468)
T ss_pred             EEec---CCeeeecCCCccHHHHHHHHHhc
Confidence            9985   44455677888888887755443

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=90.99  E-value=1.6  Score=33.21  Aligned_cols=71  Identities=13%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             eEEEEECCCCce--EEEEeCCCCchHHHHHHHHhhcCC-CCCcCeEEEecCCCCccccCCCcCCChhhcC--Cc-CceEE
Q 019378          265 CRVGVRLPDGRR--MQRNFLRTDPIQLLWSYCYSQLEG-SEMKPFRLTHAIPGATKSLDYDSKLTFEDSG--LA-NAMIS  338 (342)
Q Consensus       265 ~~i~iRlP~G~r--~~rrF~~~~~l~~l~~fv~~~~~~-~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g--L~-~~~l~  338 (342)
                      ++|.||.|+|++  +.-.+..++||.+|-.-|....+. .+...-+|+..  ++.  |  ..+.||++.+  +. .-+|+
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~--GKi--L--kD~~tL~~~~~~~~~~~tiH   75 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS--GKL--L--PDHLKLRDVLRKQDEYHMVH   75 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc--Cee--c--cchhhHHHHhhcccCCceEE
Confidence            579999999998  555558999999999999876432 33466788764  553  5  5579999996  55 46677


Q ss_pred             EEe
Q 019378          339 VTW  341 (342)
Q Consensus       339 v~w  341 (342)
                      +++
T Consensus        76 LV~   78 (79)
T cd01790          76 LVC   78 (79)
T ss_pred             EEe
Confidence            764

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=90.94  E-value=0.87  Score=44.92  Aligned_cols=67  Identities=10%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC---CCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG---SEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~---~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +|-||..+|+.+.-....++||.+|...|.... +   ++....+|+..  .+.  |  +.++||+++|+.. +.|+|
T Consensus         2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~-g~~~ip~~~QkLIy~--Gki--L--~Dd~tL~dy~I~e~~~Ivv   72 (378)
T TIGR00601         2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQ-GKDAYPVAQQKLIYS--GKI--L--SDDKTVREYKIKEKDFVVV   72 (378)
T ss_pred             EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhh-CCCCCChhHeEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEE
Confidence            688999999999999999999999999998753 4   66677888854  553  5  4568999999984 55543

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=90.92  E-value=1.6  Score=41.05  Aligned_cols=102  Identities=15%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      .|-+++..+ ..+-|++|.|+.+....|..|+.-+  ..-..+|..-.||=.......     ++..|+...+|+|+|.-
T Consensus       135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk  206 (265)
T PF02114_consen  135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYK  206 (265)
T ss_dssp             HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEE
T ss_pred             hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEE
Confidence            454554432 2346999999999999999997432  233345556678766544321     46689999999999997


Q ss_pred             CCCCceEEEEeCC---CChHHHHHHHHhhhhcCCC
Q 019378          146 PITGQKMRSWCGM---VQPESLLEDLVPFMDGGPR  177 (342)
Q Consensus       146 p~tG~~l~~~~G~---~~~~~~l~~L~~~l~~~~~  177 (342)
                        .|.++..+.|.   ..-+-+...|..+|..+..
T Consensus       207 --~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  207 --NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             --TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             --CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence              69999888774   2345567788888887654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=90.12  E-value=2.2  Score=31.86  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=51.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +|.|++ +|+++.-.+..++||.+|-+-+... .+.++..-+|+..=++.. .+  ..+.||.++|+.+ +.|++
T Consensus         2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk-~l--~D~~~L~~~~i~~g~~i~l   71 (74)
T cd01813           2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGK-PA--EDDVKISALKLKPNTKIMM   71 (74)
T ss_pred             EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCC-cC--CCCcCHHHcCCCCCCEEEE
Confidence            577777 7788888999999999999999885 477888888885201221 23  4589999999984 55554

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=89.88  E-value=1.6  Score=33.08  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=51.4

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCC--CCCCcEEEEEeCCCCceE
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYK--LDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~--v~~~P~l~ii~p~tG~~l  152 (342)
                      +++++|++.++||..|..+      .+.+.++-..   ...+..++..+ ....+...|+  +..+|.+.+...  |..+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~p~~~~~~~--~~~~  102 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAE------APLLEELAEEYGGDVEVVAVNVDD-ENPDLAAEFGVAVRSIPTLLLFKD--GKEV  102 (127)
T ss_pred             CceEEEEEEcCcCHHHHhh------chhHHHHHHHhcCCcEEEEEECCC-CChHHHHHHhhhhccCCeEEEEeC--cchh
Confidence            8899999889999999998      4555555543   35666666642 4455677777  888898876552  3334


Q ss_pred             EEEeC--CCChHHHHH
Q 019378          153 RSWCG--MVQPESLLE  166 (342)
Q Consensus       153 ~~~~G--~~~~~~~l~  166 (342)
                      ....|  ......++.
T Consensus       103 ~~~~~~~~~~~~~~~~  118 (127)
T COG0526         103 DRLVGGKVLPKEALID  118 (127)
T ss_pred             hhhhhcccCCHHHHHH
Confidence            34444  334444443

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=89.45  E-value=1  Score=34.02  Aligned_cols=71  Identities=25%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCC--CCC---cCeEEEecCCCCccccCCCcCCChhhcCCcCceEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEG--SEM---KPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMIS  338 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~--~~~---~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~  338 (342)
                      .|+|.|..++|+++.-..+.+-++..|..-+...+..  .+.   ..|.|.+. +..    ..+.+.||.++|+.++.++
T Consensus         2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~-~g~----~L~~~~tL~~~gV~dGd~L   76 (79)
T PF08817_consen    2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARA-GGR----PLDPDQTLADAGVRDGDVL   76 (79)
T ss_dssp             EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-G-GTE----EEETTSBCGGGT--TT-EE
T ss_pred             EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEec-CCc----ccCCcCcHhHcCCCCCCEE
Confidence            5899999999899999999999999999987775432  122   25788742 222    2378999999999976654


Q ss_pred             E
Q 019378          339 V  339 (342)
Q Consensus       339 v  339 (342)
                      +
T Consensus        77 ~   77 (79)
T PF08817_consen   77 V   77 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=88.99  E-value=1.8  Score=32.30  Aligned_cols=62  Identities=16%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          273 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       273 ~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|+.+.-.+..++||..|-+-|... .|.+....+|+..  .+.  +  +.+.||.+.|+. +++|.|.+
T Consensus         6 ~g~~~~l~v~~~~TV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~~~i~~g~~l~v~~   68 (76)
T cd01800           6 NGQMLNFTLQLSDPVSVLKVKIHEE-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNLANGTIIHLQL   68 (76)
T ss_pred             CCeEEEEEECCCCcHHHHHHHHHHH-HCCCHHHEEEEEC--CEE--c--CCCCcHHHcCCCCCCEEEEEE
Confidence            6788889999999999999999875 4677778888754  332  4  457899999998 56676653

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=88.82  E-value=3.6  Score=31.49  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             eEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCc--cccCCCcCCChhhcCCcCce-EEE
Q 019378          265 CRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGAT--KSLDYDSKLTFEDSGLANAM-ISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~--~~l~~~~~~Tl~e~gL~~~~-l~v  339 (342)
                      ++|.|..++-+  ...+||..+.||..|-.-|.... |.++...+|.--.....  .....+.+++|...|+.+++ |+|
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V   80 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence            67888887774  89999999999999999998854 66777777754211111  11124679999999999554 554

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=88.32  E-value=0.76  Score=37.83  Aligned_cols=74  Identities=18%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecC-------CCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHH-----HHH
Q 019378           66 SFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGK-----KVC  130 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~-------~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~-----~~~  130 (342)
                      .|.++++.....+++++|+|.++       ||++|..-      .+-|.+.+.   ++.++..+.+.+....     .|-
T Consensus         7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~a------ep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR   80 (119)
T PF06110_consen    7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAA------EPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFR   80 (119)
T ss_dssp             HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHH------HHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHH
T ss_pred             HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHH------HHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCce
Confidence            35566666667889999999974       67777664      455555554   3677766666554321     233


Q ss_pred             H--hCCCCCCcEEEEEe
Q 019378          131 T--YYKLDSIPVVLVVD  145 (342)
Q Consensus       131 ~--~y~v~~~P~l~ii~  145 (342)
                      +  .+++.++|+|+-+.
T Consensus        81 ~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   81 TDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             H--CC---SSSEEEECT
T ss_pred             EcceeeeeecceEEEEC
Confidence            3  68999999999886

; PDB: 1V9W_A 1WOU_A.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=87.88  E-value=1.5  Score=44.67  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+|++   .+-.++|=+||-++.+||.-|+.|.. +  =+++.+.++  ++.|+-.+|++..|-    ....+..||+|
T Consensus       373 gknfd~---iv~de~KdVLvEfyAPWCgHCk~laP-~--~eeLAe~~~~~~~vviAKmDaTaNd~----~~~~~~~fPTI  442 (493)
T KOG0190|consen  373 GKNFDD---IVLDEGKDVLVEFYAPWCGHCKALAP-I--YEELAEKYKDDENVVIAKMDATANDV----PSLKVDGFPTI  442 (493)
T ss_pred             ecCHHH---HhhccccceEEEEcCcccchhhhhhh-H--HHHHHHHhcCCCCcEEEEeccccccC----ccccccccceE
Confidence            345554   56688999999999999999999942 1  234555554  378888889887663    23456779999


Q ss_pred             EEEeCCCC-ceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          142 LVVDPITG-QKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       142 ~ii~p~tG-~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ++.-- .+ +..-...|.-+.++|.    .|+..+
T Consensus       443 ~~~pa-g~k~~pv~y~g~R~le~~~----~fi~~~  472 (493)
T KOG0190|consen  443 LFFPA-GHKSNPVIYNGDRTLEDLK----KFIKKS  472 (493)
T ss_pred             EEecC-CCCCCCcccCCCcchHHHH----hhhccC
Confidence            98753 22 2344456766666664    566654

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.46  E-value=8  Score=33.39  Aligned_cols=96  Identities=11%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             HHHHHHcCCeEEEEEecC-CCcchh-hhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HH
Q 019378           71 KDAASVQDKWLLVNLQST-KEFSSH-MLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KV  129 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~-~~~~~~-~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~  129 (342)
                      +..+.-.+||+++||+-- +.+-|. ..|.   -++...+|=+-+.++++++.++++..                   .+
T Consensus        23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~---Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v   99 (157)
T COG1225          23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACD---FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV   99 (157)
T ss_pred             EehHHhcCCcEEEEECCCCCCCcchHHHHH---HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence            556667789999999963 233332 2221   11223333345899999999987764                   34


Q ss_pred             HHhCCC------------CCCcEEEEEeCCCCceEEEEeCC---CChHHHHHHHHh
Q 019378          130 CTYYKL------------DSIPVVLVVDPITGQKMRSWCGM---VQPESLLEDLVP  170 (342)
Q Consensus       130 ~~~y~v------------~~~P~l~ii~p~tG~~l~~~~G~---~~~~~~l~~L~~  170 (342)
                      +..|++            ..-+...|||+ .|.+...|...   -.+++.++.|..
T Consensus       100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~-dG~I~~~~~~v~~~~h~~~vl~~l~~  154 (157)
T COG1225         100 AEAYGVWGEKKMYGKEYMGIERSTFVIDP-DGKIRYVWRKVKVKGHADEVLAALKK  154 (157)
T ss_pred             HHHhCcccccccCccccccccceEEEECC-CCeEEEEecCCCCcccHHHHHHHHHH
Confidence            567766            23578899997 68988888542   234566655543

>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]

Probab=86.00  E-value=0.99  Score=24.42  Aligned_cols=16  Identities=44%  Similarity=0.551  Sum_probs=14.1

Q ss_pred             hHHHHHHHHHHHhHHH
Q 019378          205 IENEELLQALAASMET  220 (342)
Q Consensus       205 eqde~~e~Al~asle~  220 (342)
                      ++|+++++||+.|+++
T Consensus         2 ~Ed~~L~~Al~~S~~e   17 (18)
T PF02809_consen    2 DEDEDLQRALEMSLEE   17 (18)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhhcc
Confidence            5788999999999975

In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=85.96  E-value=1.2  Score=36.99  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCChhHHHHHHhC---CCCCCcEEEEEeCCCCc
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~eg~~~~~~y---~v~~~P~l~ii~p~tG~  150 (342)
                      .-..+.-++.|..+||.+|....      |-+..+...+ -|-+.+ +...+...+...|   +..+.|+++|+|. .|+
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~-i~rd~~~el~~~~lt~g~~~IP~~I~~d~-~~~  109 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRI-ILRDENKELMDQYLTNGGRSIPTFIFLDK-DGK  109 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEE-E-HHHHHHHTTTTTT-SS--SSEEEEE-T-T--
T ss_pred             hcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEE-EEecCChhHHHHHHhCCCeecCEEEEEcC-CCC
Confidence            44455677788899999999975      5666666654 333332 1233444554444   5678999999996 589


Q ss_pred             eEEEEeCC
Q 019378          151 KMRSWCGM  158 (342)
Q Consensus       151 ~l~~~~G~  158 (342)
                      .+.+|-..
T Consensus       110 ~lg~wger  117 (129)
T PF14595_consen  110 ELGRWGER  117 (129)
T ss_dssp             EEEEEESS
T ss_pred             EeEEEcCC
Confidence            99999653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=85.53  E-value=6.9  Score=40.55  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=56.9

Q ss_pred             HHHHHcCCeEEEEE-ecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378           72 DAASVQDKWLLVNL-QSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT  148 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t  148 (342)
                      +.-++-.|++-|-+ .+++|..|....+-      +.++..+  +.-.-.++..  +-..++..|+|.+.|+++|    +
T Consensus       469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~------~~~~~~~~~~i~~~~i~~~--~~~~~~~~~~v~~vP~~~i----~  536 (555)
T TIGR03143       469 EKIKKITKPVNIKIGVSLSCTLCPDVVLA------AQRIASLNPNVEAEMIDVS--HFPDLKDEYGIMSVPAIVV----D  536 (555)
T ss_pred             HHHHhcCCCeEEEEEECCCCCCcHHHHHH------HHHHHHhCCCceEEEEECc--ccHHHHHhCCceecCEEEE----C
Confidence            33345567775555 79999999986532      2333333  4555554443  4467889999999999997    4


Q ss_pred             CceEEEEeCCCChHHHHHHH
Q 019378          149 GQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       149 G~~l~~~~G~~~~~~~l~~L  168 (342)
                      |+++  +.|..+.++++..|
T Consensus       537 ~~~~--~~G~~~~~~~~~~~  554 (555)
T TIGR03143       537 DQQV--YFGKKTIEEMLELI  554 (555)
T ss_pred             CEEE--EeeCCCHHHHHHhh
Confidence            6654  66988999998866

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3414 consensus Component of the U4/U6

Probab=85.42  E-value=14  Score=30.70  Aligned_cols=98  Identities=13%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             HHHHH--HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378           70 AKDAA--SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        70 A~~~A--k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      ++.+|  ..+.|.++|-|-.+|.+.|-.|+ ++|.  .+..-+++--++|-++++  +-..+.+.|.+...|++.+.-..
T Consensus        13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD-~~L~--~i~~~vsnfa~Iylvdid--eV~~~~~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   13 EVDQAILSTEERLVVIRFGRDWDPTCMKMD-ELLS--SIAEDVSNFAVIYLVDID--EVPDFVKMYELYDPPTVMFFFNN   87 (142)
T ss_pred             HHHHHHhcccceEEEEEecCCCCchHhhHH-HHHH--HHHHHHhhceEEEEEecc--hhhhhhhhhcccCCceEEEEEcC
Confidence            34444  46779999999999999999995 3332  233444556678888887  56678889999999988775432


Q ss_pred             --------CCceEEEEeCC-CChHHHHHHHHhhhh
Q 019378          148 --------TGQKMRSWCGM-VQPESLLEDLVPFMD  173 (342)
Q Consensus       148 --------tG~~l~~~~G~-~~~~~~l~~L~~~l~  173 (342)
                              ||. -..|.|. -+.++|++.+..+..
T Consensus        88 kHmkiD~gtgd-n~Kin~~~~~kq~~Idiie~iyR  121 (142)
T KOG3414|consen   88 KHMKIDLGTGD-NNKINFAFEDKQEFIDIIETIYR  121 (142)
T ss_pred             ceEEEeeCCCC-CceEEEEeccHHHHHHHHHHHHH
Confidence                    221 1234443 367889988877664

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=85.38  E-value=2.5  Score=29.62  Aligned_cols=51  Identities=10%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             EEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           83 VNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      +.+..++|..|...          +++|++   .|..+-++.+......+...++..++|.+.|
T Consensus         2 ~vy~~~~C~~C~~~----------~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    2 VVYTKPGCPYCKKA----------KEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEESTTSHHHHHH----------HHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             EEEEcCCCcCHHHH----------HHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            55677899999986          455554   4666655544434444566669999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=85.15  E-value=2.8  Score=31.60  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             CCCCchHHHHHHHHhhc-CCC-CCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          282 LRTDPIQLLWSYCYSQL-EGS-EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       282 ~~~~~l~~l~~fv~~~~-~~~-~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..++||..|-.-|.... ++. +...++|+..  .+.  |  +.+.||++.|+. +++|+++
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~--GKi--L--~D~~TL~dygI~~gstlhLv   73 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHC--GRK--L--KDDQTLDFYGIQSGSTIHIL   73 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEeC--CcC--C--CCCCcHHHcCCCCCCEEEEE
Confidence            57899999999998875 233 3667899864  553  4  567999999998 6777654

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=84.93  E-value=3.9  Score=30.60  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=47.4

Q ss_pred             ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-C-ceEEE
Q 019378          270 RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-N-AMISV  339 (342)
Q Consensus       270 RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~-~~l~v  339 (342)
                      +...|+.+.-.+..++||..|-..+... .|.++...+|   |-.+.  + .+.+.||+++|+. + .+|++
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~-~gip~~~QrL---~~G~~--L-~dD~~tL~~ygi~~~g~~~~l   72 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLD-YGFPPAVQRW---VIGQR--L-ARDQETLYSHGIRTNGDSAFL   72 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEE---EcCCe--e-CCCcCCHHHcCCCCCCCEEEE
Confidence            4567778889999999999999999876 4667777888   32432  4 3567999999998 5 45543

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=84.76  E-value=0.87  Score=46.69  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh
Q 019378           53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS  124 (342)
Q Consensus        53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~  124 (342)
                      .+|-|-.++  +-..+|..|+..++   |--||-|.++||..|..|-      |..+++-+.      =..+..+|--..
T Consensus        33 tLy~~~D~ii~Ld~~tf~~~v~~~~---~~~lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~  103 (606)
T KOG1731|consen   33 TLYSPDDPIIELDVDTFNAAVFGSR---KAKLVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADE  103 (606)
T ss_pred             cccCCCCCeEEeehhhhHHHhcccc---hhHHHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccch
Confidence            355554444  44778999988776   5568999999999999994      444444432      245566778888


Q ss_pred             hHHHHHHhCCCCCCcEEEEEeCCCCc--eEEEEeCCCChHHHHHHHHhhhh
Q 019378          125 EGKKVCTYYKLDSIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       125 eg~~~~~~y~v~~~P~l~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +...+|+.++|..||+|-...|..-.  .=..+.|...+.++.+.|...+.
T Consensus       104 ~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la  154 (606)
T KOG1731|consen  104 ENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA  154 (606)
T ss_pred             hhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence            89999999999999999998874211  11345666667777776666654

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=84.56  E-value=5.2  Score=33.24  Aligned_cols=66  Identities=11%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             HHHHHhcc-EEEEEeecCChhHHHHHHhCCCC--CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          106 VSQTISTN-FIFWQVYDDTSEGKKVCTYYKLD--SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       106 V~~~i~~~-FV~w~~~~~s~eg~~~~~~y~v~--~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      |.+-.+.. +.|.-+|.+....  +...+++.  .+|.++++++..+ .-....|.++.+.+.+-+..+++-
T Consensus        49 vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G  117 (130)
T cd02983          49 VAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG  117 (130)
T ss_pred             HHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence            44444456 5555555554433  88889984  5999999998654 322367888999888877777764

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=83.29  E-value=2.7  Score=37.15  Aligned_cols=91  Identities=9%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeec--------------------------
Q 019378           68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD--------------------------  121 (342)
Q Consensus        68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~--------------------------  121 (342)
                      ..++......++..++.|.+.+|..|+.|...+-.+   ..-++=.++++.+.-                          
T Consensus        67 ~~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~  143 (197)
T cd03020          67 DDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKPN---ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMS  143 (197)
T ss_pred             ccCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhhc---cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHh
Confidence            344445555678888889999999998886544210   000111222222111                          


Q ss_pred             -------------CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHH
Q 019378          122 -------------DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLED  167 (342)
Q Consensus       122 -------------~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~  167 (342)
                                   .-.+...++..+++.+.|++++ .  +|..   +.|..+++.|...
T Consensus       144 ~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~-~--~G~~---~~G~~~~~~l~~~  196 (197)
T cd03020         144 GGKVPPPAASCDNPVAANLALGRQLGVNGTPTIVL-A--DGRV---VPGAPPAAQLEAL  196 (197)
T ss_pred             CCCCCCCccccCchHHHHHHHHHHcCCCcccEEEE-C--CCeE---ecCCCCHHHHHhh
Confidence                         0111234567889999999974 2  3654   6788888877653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.95  E-value=3.6  Score=40.51  Aligned_cols=96  Identities=11%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      ..+......||-|+.+||..|+.|- -.|.  .+...+.  ...-++.++.+  -...+++.+.+..||++.+..+ .++
T Consensus       157 ~~~~~~~~~lv~f~aPwc~~ck~l~-~~~~--~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~-~~~  230 (383)
T KOG0191|consen  157 TVKDSDADWLVEFYAPWCGHCKKLA-PEWE--KLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPP-GEE  230 (383)
T ss_pred             hhhccCcceEEEEeccccHHhhhcC-hHHH--HHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecC-CCc
Confidence            3455677788888999999999983 2222  2333443  45555555554  5567889999999999977765 333


Q ss_pred             eEEEEeCCCChHHHHHHHHhhhhc
Q 019378          151 KMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ......|.-+.+.++..+......
T Consensus       231 ~~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  231 DIYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             ccccccccccHHHHHHHHHhhcCC
Confidence            244556677888887766666554

>TIGR02180 GRX_euk Glutaredoxin

Probab=82.93  E-value=2  Score=31.82  Aligned_cols=56  Identities=7%  Similarity=0.046  Sum_probs=35.1

Q ss_pred             EEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHH-HHHHhCCCCCCcEEEE
Q 019378           83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGK-KVCTYYKLDSIPVVLV  143 (342)
Q Consensus        83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~-~~~~~y~v~~~P~l~i  143 (342)
                      +.+..+||..|..+. .+|..-.    ++..|.++.++.+..  +.. .+.+.++..++|.+.+
T Consensus         2 ~~f~~~~Cp~C~~~~-~~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i   60 (84)
T TIGR02180         2 VVFSKSYCPYCKKAK-EILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI   60 (84)
T ss_pred             EEEECCCChhHHHHH-HHHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence            567788999999984 2222211    222377777766532  222 3667789999999853

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=82.74  E-value=4.5  Score=30.01  Aligned_cols=64  Identities=19%  Similarity=0.023  Sum_probs=46.1

Q ss_pred             EECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEe-cCCCCccccCCCcCCChhhcCCc
Q 019378          269 VRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH-AIPGATKSLDYDSKLTFEDSGLA  333 (342)
Q Consensus       269 iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~-~fPr~~~~l~~~~~~Tl~e~gL~  333 (342)
                      |+||||+.++-....+.+.++|++-|..++.-....-|-|.- .-+... ..-.+.+++|.+..-.
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~-~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGE-HHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSS-EEEE-SSSBGGGSTBT
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCc-ceeccCcccHHHHcCC
Confidence            689999999999999999999999998887433455688866 111111 1223778888888655

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=82.31  E-value=3.7  Score=38.17  Aligned_cols=48  Identities=17%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             HHHHHhCCC---------------CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          127 KKVCTYYKL---------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       127 ~~~~~~y~v---------------~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      .++|+.|+|               +.-=++++|+| .|+.+...--+-+++++.+.|..-+..+
T Consensus       216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidP-eg~Fvd~~GrN~~~~~~~~~I~~~v~~y  278 (280)
T KOG2792|consen  216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDP-EGEFVDYYGRNYDADELADSILKHVASY  278 (280)
T ss_pred             HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECC-CcceehhhcccCCHHHHHHHHHHHHHhc
Confidence            466778876               22236788999 5887766544778999988887766543

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=82.25  E-value=14  Score=26.46  Aligned_cols=70  Identities=11%  Similarity=0.002  Sum_probs=37.4

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhcc-EEEEEeecCCh-hHHHHH-Hh-CCCCCCcEEEEEeCCCCceEEEEeC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN-FIFWQVYDDTS-EGKKVC-TY-YKLDSIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~-FV~w~~~~~s~-eg~~~~-~~-y~v~~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      ++.+..++|..|..+.          .++.++ .-+..+|++.. +..... .. ++..++|++ +++  +|..+.    
T Consensus         2 v~ly~~~~C~~C~~~~----------~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~--~g~~l~----   64 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLM----------RTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFA--DGSFLT----   64 (77)
T ss_pred             EEEEECCCChhHHHHH----------HHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EEC--CCeEec----
Confidence            3456778999999863          344432 22223455433 222222 22 478899997 454  455432    


Q ss_pred             CCChHHHHHHH
Q 019378          158 MVQPESLLEDL  168 (342)
Q Consensus       158 ~~~~~~~l~~L  168 (342)
                      ..+..++.+.|
T Consensus        65 ~~~~~~~~~~l   75 (77)
T TIGR02200        65 NPSAAQVKAKL   75 (77)
T ss_pred             CCCHHHHHHHh
Confidence            34455555544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=80.44  E-value=6.9  Score=30.04  Aligned_cols=56  Identities=14%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             CCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH-HHHHhCCCCCCcEEEEEe
Q 019378           78 DKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK-KVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        78 ~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~-~~~~~y~v~~~P~l~ii~  145 (342)
                      .++++|+..+    ++|..|...          +++|++   .|...-++.+ ++.. .+....+..++|.|. |+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~a----------k~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vf-i~   70 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKV----------VQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLY-VN   70 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHH----------HHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEE-EC
Confidence            3677788765    688888875          445554   3444443333 3333 355667888999984 54

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
2dlx_A	153	Solution Structure Of The Uas Domain Of Human Ubx D		1e-30

>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain- Containing Protein 7 Length = 153

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 40  AASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD 99
            +S  D     LA L+RPP  LM  GSFE AK+   +Q+KWL++N+Q+ ++F+   LNRD
Sbjct: 4   GSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRD 63
Query: 100 TWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV 159
            W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  W   +
Sbjct: 64  VWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQL 122
Query: 160 QPESLLEDLVPFM 172
              S L+ +  F+
Sbjct: 123 DVSSFLDQVTGFL 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	1e-53
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	7e-17
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	3e-13
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	6e-10
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	1e-09
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	2e-09
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	4e-08
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2kuc_A	130	Putative disulphide-isomerase; structural genomics	1e-04

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score =  172 bits (438), Expect = 1e-53
 Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 39  GAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNR 98
             +S  D     LA L+RPP  LM  GSFE AK+   +Q+KWL++N+Q+ ++F+   LNR
Sbjct: 3   SGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNR 62

Query: 99  DTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158
           D W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  W  +
Sbjct: 63  DVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQL 122

Query: 159 VQPESLLEDLVPFMD 173
               S L+ +  F+ 
Sbjct: 123 -DVSSFLDQVTGFLG 136

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109

 Score = 74.4 bits (183), Expect = 7e-17
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 242 ASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS 301
            S+      P LPEEP      +  V +R P+GR ++R F ++   Q+L  +      G 
Sbjct: 1   GSSGSSGEVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GY 58

Query: 302 EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 334
               +RL+ + P   ++L+ +   + ED G+  
Sbjct: 59  HKSLYRLSTSFPR--RALEVEGGSSLEDIGITV 89

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Length = 127

 Score = 64.6 bits (157), Expect = 3e-13
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 241 EASATEKPAYPILPEEPKVDRSL-LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE 299
            + A +            ++ +     + +RL DG R+ + F  +  I  +  +      
Sbjct: 28  SSPAQQAENEAKASSSILINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARP 87

Query: 300 GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW 341
                 F L    P   K L  D   T +++ L NA+I    
Sbjct: 88  AMAATSFVLMTTFPN--KELA-DENQTLKEANLLNAVIVQRL 126

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Length = 124

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 235 ASTDKDEASATEKPAYPILPEEPK-------VDRSLLCRVGVRLPDGRRMQRNFLRTDPI 287
            +    +           +P E                ++ +R PDG+R Q        +
Sbjct: 7   GTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGKREQITLPEQAKL 66

Query: 288 QLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL-DYDSKLTFEDSGLA 333
             L  +  S  +G   + F L    P   + L   D  +T +++GL 
Sbjct: 67  LALVKHVQS--KGYPNERFELLTNFP--RRKLSHLDYDITLQEAGLC 109

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 178

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 19/137 (13%)

Query: 56  RPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNF 114
            P F +     +F++A    +   K L + L   +   +++        E++   +S NF
Sbjct: 32  HPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNF 91

Query: 115 IFWQVYDDTSEGKKVCTYY----------------KLDSIPVVLVVDPITGQKMRSWC-- 156
           I W         +                      K D  P+ L++              
Sbjct: 92  ITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQ 151

Query: 157 GMVQPESLLEDLVPFMD 173
           G    + L+  L+  M+
Sbjct: 152 GNTTVDELMMRLMAAME 168

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Length = 84

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSL-DYDS 323
            ++ +R P G  ++R FL ++ +Q+++ +  S  +G     ++L    P   + +   D 
Sbjct: 8   SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS--KGFPWDEYKLLSTFP--RRDVTQLDP 63

Query: 324 KLTFEDSGLA 333
             +  +  L 
Sbjct: 64  NKSLLEVKLF 73

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Length = 109

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 242 ASATEKPAYPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS 301
            S+               DRS + R+  RLPDG      F    P++    +  +Q  G+
Sbjct: 1   GSSGSSGR----------DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFA-AQTVGN 49

Query: 302 EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 334
               F L    P    + +   +    D  LA 
Sbjct: 50  TYGNFSLATMFPRREFTREDYKR-RLLDLELAP 81

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 16/81 (19%), Positives = 34/81 (41%)

Query: 66  SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE 125
            + +A   A    + ++V   S        +N    ++  VS+ +   F+   V  DT E
Sbjct: 7   PYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPE 66

Query: 126 GKKVCTYYKLDSIPVVLVVDP 146
           G+++   Y++   P  + + P
Sbjct: 67  GQELARRYRVPGTPTFVFLVP 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 51/352 (14%), Positives = 113/352 (32%), Gaps = 91/352 (25%)

Query: 1   MFYAGSGARYPLHEPSSLIA--FRNFDEEMKRP-GV-WESEQGAASTADSSRDNLASLYR 56
           +   GSG        + +      ++  + K    + W +     ++ ++  + L  L  
Sbjct: 158 V--LGSGK-------TWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLY 207

Query: 57  ---PPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLN-RDTWANEAV------ 106
              P +    + S        S+Q +  L  L  +K + + +L   +    +A       
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 107 SQT-ISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS----WCGMVQP 161
            +  ++T F   QV D  S             I +      +T  +++S    +    +P
Sbjct: 266 CKILLTTRFK--QVTDFLSAATTT-------HISLDHHSMTLTPDEVKSLLLKYLDC-RP 315

Query: 162 ESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASMETI 221
           + L           PRE     ++  PR  S   +   +D      +         + TI
Sbjct: 316 QDL-----------PRE--VLTTN--PRRLSIIAESI-RDGLAT-WDNWKHVNCDKLTTI 358

Query: 222 KDASGVSSSDTDVASTDKDEASATEKPAYP---ILPEEPKVDRSLLCRVGVRLPDGRRMQ 278
            ++S        +   +  E     +  +    + P    +   LL  +   +       
Sbjct: 359 IESS--------LNVLEPAE----YRKMFDRLSVFPPSAHIPTILLSLIWFDVI------ 400

Query: 279 RNFLRTDPIQLLWSYC-YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFED 329
               ++D + ++     YS +E    +P   T +IP     +  + K+  E+
Sbjct: 401 ----KSDVMVVVNKLHKYSLVEK---QPKESTISIPS----IYLELKVKLEN 441

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 11/118 (9%)

Query: 63  FNGSFEKAKDAASVQDKWLLVNLQST-----KEFSSHMLNRDTWANEAVSQTISTNFIFW 117
              SF +A   A V+DK L V+  +T     K      L++  + +  V+   + +F+  
Sbjct: 12  RELSFPEALKRAEVEDKLLFVDCFTTWCGPCK-----RLSKVVFKDSLVADYFNRHFVNL 66

Query: 118 QVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG 175
           ++  +  EG ++   Y + + P +L ++  +G+ +    G      LL+ +   ++  
Sbjct: 67  KMDMEKGEGVELRKKYGVHAYPTLLFINS-SGEVVYRLVGAEDAPELLKKVKLGVESE 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	99.97
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.96
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	99.87
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	99.79
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	99.78
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	99.78
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	99.74
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.5
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.47
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.46
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.45
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.11
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.4
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.31
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.26
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.02
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.0
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.96
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.95
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.94
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.94
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.93
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.92
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.91
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.9
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.9
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.89
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.89
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.88
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.87
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.87
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.87
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.86
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.86
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.86
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.85
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.85
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.85
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.84
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.84
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.82
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.82
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.82
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.82
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.81
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.8
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.8
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.79
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.78
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.77
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.77
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.76
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.76
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.76
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.76
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.76
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.76
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.75
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.71
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.71
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.71
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.7
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.7
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.69
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.68
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.67
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.67
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.67
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.64
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.64
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.64
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.63
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.63
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.63
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.62
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.62
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.61
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.61
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.6
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.6
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.58
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.58
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.57
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.55
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.54
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.54
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.54
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.53
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.52
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.52
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.51
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.5
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.5
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.5
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.49
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.47
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.47
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.86
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.47
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.46
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.45
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.45
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.45
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.45
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.45
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.45
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.45
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.44
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.44
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.43
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.39
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.38
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.37
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.37
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.36
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.35
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.35
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.35
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.34
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.33
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.3
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.28
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.28
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.27
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.24
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.22
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.22
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.21
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.19
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.18
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.18
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.17
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.16
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.16
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.15
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.14
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.12
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.12
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.11
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.08
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.06
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.05
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.04
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.04
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.01
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.0
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.0
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.99
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.98
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.98
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.97
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.94
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.94
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.93
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.9
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.88
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.87
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.86
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.85
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.84
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.81
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.81
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.8
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.8
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.74
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.74
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	97.7
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.69
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	97.69
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.69
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.67
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.66
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.66
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.64
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	97.64
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.63
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.62
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.56
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.55
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.55
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.54
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	97.54
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	97.53
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	96.67
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.5
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.46
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.46
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.41
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.39
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	96.51
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	97.34
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	97.31
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.29
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.29
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.28
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	97.22
3me7_A	170	Putative uncharacterized protein; electron transfe	97.2
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.19
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.15
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.12
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.11
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	97.05
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	97.03
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	97.02
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	97.01
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.01
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.0
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	96.99
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	96.89
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	96.87
1ttz_A	87	Conserved hypothetical protein; structural genomic	96.86
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	96.83
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	96.81
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	96.77
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	96.76
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	96.73
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.71
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	96.71
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.71
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	96.69
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	96.69
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	96.64
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	96.64
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	96.64
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	96.59
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	96.57
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	96.57
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	96.56
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	96.49
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	96.49
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.49
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	96.48
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	96.46
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	96.46
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	96.45
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	96.41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	96.34
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	96.32
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	96.32
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	96.29
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	96.24
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	96.23
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	96.18
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	96.16
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	96.14
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	96.1
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	96.05
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	96.05
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	95.97
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	95.95
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	95.94
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	95.88
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	95.88
1we6_A	111	Splicing factor, putative; structural genomics, ub	95.85
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	95.78
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	95.77
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	95.77
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	95.76
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	95.75
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	95.73
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	95.72
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	95.7
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.68
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	95.59
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	95.57
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	95.54
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	95.51
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	95.5
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	95.49
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	95.47
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	95.46
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	95.46
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	95.45
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	95.44
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	95.41
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	95.41
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	95.32
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	95.29
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	95.28
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	95.24
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	95.21
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	95.11
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.09
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	95.07
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	94.97
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	94.93
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	94.84
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	94.75
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	94.73
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	94.68
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	94.65
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	94.58
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	94.58
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	94.58
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	94.55
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	94.5
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	94.45
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	94.43
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	94.41
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	94.39
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	94.16
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	94.14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	94.07
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	94.03
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	94.02
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	93.99
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	93.99
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	93.96
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	93.68
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	93.62
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	93.55
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	92.54
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	93.42
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	93.29
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	93.2
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	93.17
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	93.13
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	93.08
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	92.98
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	92.85
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	92.68
2kj6_A	97	Tubulin folding cofactor B; methods development, N	92.67
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	92.65
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	92.62
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	92.56
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	92.28
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	92.14
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	91.82
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	91.4
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	91.3
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	91.24
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	91.17
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	90.79
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	90.6
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	90.53
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	90.52
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	90.51
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	90.34
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	90.31
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	90.3
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	90.25
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	90.02
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	89.84
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	89.57
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	89.5
1kte_A	105	Thioltransferase; redox-active center, electron tr	89.27
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	89.24
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	89.13
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	89.07
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	88.4
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	88.24
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	88.01
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	87.53
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	87.3
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	86.59
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	86.59
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	86.23
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	85.95
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	85.65
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	85.61
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	85.49
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	84.32
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	84.2
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	83.98
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	83.53
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	83.44
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	83.37
1z6m_A	175	Conserved hypothetical protein; structural genomic	83.31
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	83.09
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	81.85

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=8.5e-31  Score=229.62  Aligned_cols=134  Identities=20%  Similarity=0.252  Sum_probs=124.7

Q ss_pred             ccchhHHHHHHhhCCCCcCcccccHHHHHHHH----HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEE
Q 019378           43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAA----SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQ  118 (342)
Q Consensus        43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~A----k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~  118 (342)
                      ++..+.+.|+++||++||.||.|+|++|++.|    ++++||||||||+++|.+|+.||++||||++|+++|++|||+|+
T Consensus        16 ~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~   95 (178)
T 2ec4_A           16 ALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWA   95 (178)
T ss_dssp             HHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEE
Confidence            45779999999999999999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             eecCChh-------------HHHHHHh---CCCCCCcEEEEEeCCCC--ceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          119 VYDDTSE-------------GKKVCTY---YKLDSIPVVLVVDPITG--QKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       119 ~~~~s~e-------------g~~~~~~---y~v~~~P~l~ii~p~tG--~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      +|+++++             |.+++..   |++.+||+++||+|+.+  +++.++.|.+++++|++.|..+++.+.
T Consensus        96 ~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~  171 (178)
T 2ec4_A           96 WDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFT  171 (178)
T ss_dssp             EECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred             EeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            9999999             5566655   99999999999998643  578999999999999999999999763

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.96  E-value=2.5e-29  Score=215.22  Aligned_cols=133  Identities=43%  Similarity=0.853  Sum_probs=126.5

Q ss_pred             ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378           43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD  122 (342)
Q Consensus        43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~  122 (342)
                      +++++...|+.+|+||+.++|.++|++|++.|++++|||||+|+++||.+|+.|+++||+|++|.++|++|||+|++|++
T Consensus         7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~   86 (153)
T 2dlx_A            7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHD   86 (153)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESS
T ss_pred             CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecC
Confidence            44667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      ++++..+++.|++..+|+++||+|.+|+.+.+|.| +++++|+..|..+++.+.
T Consensus        87 ~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~  139 (153)
T 2dlx_A           87 SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG  139 (153)
T ss_dssp             SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred             CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999987988888877 999999999999998874

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=99.87  E-value=5.4e-22  Score=160.07  Aligned_cols=86  Identities=27%  Similarity=0.484  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhh
Q 019378          250 YPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFED  329 (342)
Q Consensus       250 ~~~l~~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e  329 (342)
                      ...||+||+.+.+++|+|+||||||+|++|||+.+++|++||+||.++  ++....|+|+++|||+.  +..+.++||+|
T Consensus         9 ~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~--l~~d~~~TL~e   84 (109)
T 2cr5_A            9 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLED   84 (109)
T ss_dssp             CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHHH
T ss_pred             cccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcC--CCCCCCCCHHH
Confidence            467999999888899999999999999999999999999999999986  66678999999999987  55588999999


Q ss_pred             cCCcCceEEE
Q 019378          330 SGLANAMISV  339 (342)
Q Consensus       330 ~gL~~~~l~v  339 (342)
                      +||.|+++++
T Consensus        85 ~gL~p~a~L~   94 (109)
T 2cr5_A           85 IGITVDTVLN   94 (109)
T ss_dssp             HTCSSCEEEE
T ss_pred             cCCCCCeEEE
Confidence            9999765443

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=99.79  E-value=4.9e-19  Score=142.64  Aligned_cols=84  Identities=25%  Similarity=0.352  Sum_probs=71.2

Q ss_pred             CCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-c
Q 019378          257 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A  335 (342)
Q Consensus       257 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~  335 (342)
                      |+.+.++.|+||||||||+|++|||+.+++|++||+||.++. +....+|.|+++|||+.+.. .|.++||+|+||.| +
T Consensus         6 p~~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~-~~~~~~f~L~t~fPrk~l~~-~d~~~TL~elgL~psa   83 (109)
T 2dzk_A            6 SGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTV-GNTYGNFSLATMFPRREFTR-EDYKRRLLDLELAPSA   83 (109)
T ss_dssp             CCCCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHH-TTSSCSCEEECSSSCCBCCT-TTTTSBTGGGTCSSEE
T ss_pred             CCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcc-CCCCCceEEEcCCCCcCCcc-cccCCCHHHCCCCCce
Confidence            344456789999999999999999999999999999999974 44568999999999997332 36899999999997 6


Q ss_pred             eEEEEeC
Q 019378          336 MISVTWE  342 (342)
Q Consensus       336 ~l~v~w~  342 (342)
                      +|+|+|.
T Consensus        84 ~L~v~~~   90 (109)
T 2dzk_A           84 SVVLLPA   90 (109)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            6788873

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=99.78  E-value=8e-19  Score=134.93  Aligned_cols=77  Identities=17%  Similarity=0.391  Sum_probs=66.6

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCce-EEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAM-ISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~-l~v  339 (342)
                      .+++|+|+||||||+|++|||+.+++|++||+||.+.  ++...+|.|+++|||+.+. ..|.++||+|+||.|++ |+|
T Consensus         4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~-~~d~~~TL~e~gL~p~a~L~v   80 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVT-QLDPNKSLLEVKLFPQETLFL   80 (84)
T ss_dssp             CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGG-GSCTTSBTTTTTCCSEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCc-CCCCCCCHHHCCCCCCCEEEE
Confidence            3579999999999999999999999999999999985  6678999999999999732 34789999999999755 554


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      +
T Consensus        81 e   81 (84)
T 3qx1_A           81 E   81 (84)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=99.78  E-value=4.4e-19  Score=146.73  Aligned_cols=78  Identities=22%  Similarity=0.341  Sum_probs=71.1

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW  341 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w  341 (342)
                      .+.|+|+||||||+|+++||+.+++|++||+||.++..++....|.|+++|||+.  +. +.++||+|+||.|++|+++|
T Consensus        50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~--l~-d~~~TL~eagL~psavl~k~  126 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQRL  126 (127)
T ss_dssp             SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEE--CC-STTCBHHHHTCSSCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCC--CC-CCCCcHHHCCCcCceEEEEe
Confidence            4689999999999999999999999999999999986655678999999999986  54 67999999999999999999


Q ss_pred             C
Q 019378          342 E  342 (342)
Q Consensus       342 ~  342 (342)
                      .
T Consensus       127 ~  127 (127)
T 1s3s_G          127 T  127 (127)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=99.74  E-value=5.7e-18  Score=139.34  Aligned_cols=81  Identities=22%  Similarity=0.280  Sum_probs=70.3

Q ss_pred             CCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccC-CCcCCChhhcCCcC-
Q 019378          257 PKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN-  334 (342)
Q Consensus       257 P~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~-  334 (342)
                      |..+..+.|+|+||||||+|++|||+.+++|++||+||.++  ++....|.|+++|||+.  +. .|.++||+|+||.| 
T Consensus        36 ~~d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~--l~~~d~~~TL~e~gL~ps  111 (124)
T 1wj4_A           36 GIDVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRK--LSHLDYDITLQEAGLCPQ  111 (124)
T ss_dssp             CCCCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCE--ETSSCSSSCTTTTTCCSS
T ss_pred             ccCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcC--CccCCCCCCHHHCCCCCc
Confidence            34455789999999999999999999999999999999986  66778999999999997  43 47899999999996 


Q ss_pred             ceEEEEe
Q 019378          335 AMISVTW  341 (342)
Q Consensus       335 ~~l~v~w  341 (342)
                      ++|+|++
T Consensus       112 a~Liv~~  118 (124)
T 1wj4_A          112 ETVFVQE  118 (124)
T ss_dssp             BCCEEEE
T ss_pred             eEEEEEE
Confidence            6677764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.50  E-value=6.2e-14  Score=120.30  Aligned_cols=114  Identities=11%  Similarity=0.195  Sum_probs=100.5

Q ss_pred             CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------
Q 019378           61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------  126 (342)
Q Consensus        61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------  126 (342)
                      .....+|++++..|+.++|++||+|+.+||.+|+.|...+|.++.+.+.++++|+++.++++....              
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER  109 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhh
Confidence            345678999999999999999999999999999999999999999999999999999999875431              


Q ss_pred             ----------HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC-hHHHHHHHHhhhhcC
Q 019378          127 ----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ-PESLLEDLVPFMDGG  175 (342)
Q Consensus       127 ----------~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~-~~~~l~~L~~~l~~~  175 (342)
                                .-.+..|++..+|+++|||+ +|+++.++.|..+ +++|+..|...++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             EEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                      11167899999999999997 7999988899998 999999999888753

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=5.9e-13  Score=108.36  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=102.3

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      +...+|++++..|..++|++||+|+++||..|+.+...++.++.+.++++.+++++.++.+..+...++..|++..+|++
T Consensus        11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~   90 (130)
T 2kuc_A           11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL   90 (130)
T ss_dssp             CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEE
T ss_pred             cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEE
Confidence            45789999999999999999999999999999999988888899999999999999999887677889999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +|+++ +|+++.++.|..+.++|...|...+..
T Consensus        91 ~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           91 LFINS-SGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             EEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             EEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            99986 799999999999999999888887764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.46  E-value=1.2e-13  Score=117.34  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=97.9

Q ss_pred             HhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh
Q 019378           53 SLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY  132 (342)
Q Consensus        53 ~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~  132 (342)
                      ..|+.  .+-+..+|++|++.|++++|++||+|+.+||.+|+.|...++.++++.++++.+||.+.+|.+..+   .+..
T Consensus        21 ~~~~~--~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~   95 (151)
T 3ph9_A           21 RGWGD--DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLS   95 (151)
T ss_dssp             TTSCT--TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGC
T ss_pred             ccccC--CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhh
Confidence            44443  345778999999999999999999999999999999999999999999999889999988754333   3567


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCC-------C---ChHHHHHHHHhhhhcC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGM-------V---QPESLLEDLVPFMDGG  175 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~-------~---~~~~~l~~L~~~l~~~  175 (342)
                      |++.++|+++|+++ +|+++.++.|.       .   +.+.+|+.+..++.+.
T Consensus        96 ~~v~~~PT~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~  147 (151)
T 3ph9_A           96 PDGQYVPRIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI  147 (151)
T ss_dssp             TTCCCSSEEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred             cCCCCCCEEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence            89999999999997 69999899997       3   4567777777777654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.45  E-value=1.3e-12  Score=110.45  Aligned_cols=107  Identities=10%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh---------hHHHHHHhCC
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------EGKKVCTYYK  134 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~---------eg~~~~~~y~  134 (342)
                      .++.+++..|+.++|++||+|+ ++||.+|..+...++.++.+.++.+.+|+++.+|.+..         ....++..|+
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~  113 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK  113 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC
Confidence            8899999999999999999999 89999999999999999999999888999999998763         3567899999


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhh
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD  173 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~  173 (342)
                      +..+|+++|||+ +|+++.++ |..  +++.|+..|...+.
T Consensus       114 v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          114 VTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            999999999997 79999999 998  89999998887765

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.11  E-value=2e-14  Score=117.29  Aligned_cols=113  Identities=19%  Similarity=0.268  Sum_probs=102.4

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      |..+ .+++..|..++|++||+|+++||..|+.+...++.++.+.+.+..+++++.++++..+...+++.|++..+|+++
T Consensus         5 w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~   83 (130)
T 2lst_A            5 WYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFV   83 (130)
Confidence            4444 899999999999999999999999999999999999999999999999999999877888899999999999999


Q ss_pred             EEeCCCCce--EEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          143 VVDPITGQK--MRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       143 ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      |+++.+|++  +.++.|..+++.|...|...+....
T Consensus        84 ~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~  119 (130)
T 2lst_A           84 FLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG  119 (130)
Confidence            999878998  8899999999999988888887653

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.40  E-value=8.9e-13  Score=114.52  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC------
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY------  133 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y------  133 (342)
                      ++=+...+++|++.|++++|++||+|+.+||.+|+.|...+|.+++|.++++++||++.+|.+..  ..++..|      
T Consensus        21 ~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~--~~l~~~y~~~~q~   98 (173)
T 3ira_A           21 PVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREER--PDIDNIYMTVCQI   98 (173)
T ss_dssp             SSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTC--HHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCccc--CcHHHHHHHHHHH
Confidence            44466778999999999999999999999999999999999999999999999999999998742  2344444      


Q ss_pred             --CCCCCcEEEEEeCCCCceEEEEe-----CCCChHHHHHHHHhhhhcC
Q 019378          134 --KLDSIPVVLVVDPITGQKMRSWC-----GMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       134 --~v~~~P~l~ii~p~tG~~l~~~~-----G~~~~~~~l~~L~~~l~~~  175 (342)
                        ++.++|+++|++| .|+++....     |..+.+.|+..|..+.+.+
T Consensus        99 ~~gv~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~  146 (173)
T 3ira_A           99 ILGRGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIW  146 (173)
T ss_dssp             HHSCCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHH
T ss_pred             HcCCCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHH
Confidence              8999999999998 688876532     1223455766666665543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.31  E-value=1.2e-11  Score=101.10  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=90.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCC---CCCcE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKL---DSIPV  140 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v---~~~P~  140 (342)
                      .+|++++..|+.++|++||+|+++||.+|+.+.. +|.++.+...++.+++++.++++. .+...++..|++   .++|+
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt   94 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPA   94 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSE
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccce
Confidence            5789999999999999999999999999999986 689989999998899999999843 345678999999   99999


Q ss_pred             EEEEeCCCCceEEEEeC-------CCChHHHHHHHHhh
Q 019378          141 VLVVDPITGQKMRSWCG-------MVQPESLLEDLVPF  171 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G-------~~~~~~~l~~L~~~  171 (342)
                      ++++++ +|+++.+..|       ..+.+++.+.|...
T Consensus        95 ~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           95 VVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence            999997 7999999888       56777766655543

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.26  E-value=3.5e-11  Score=99.02  Aligned_cols=106  Identities=14%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l  141 (342)
                      ...++.++..+  .+|++||+|+++||..|..+...++.++.+.+.+. +++++.++++.  .+...++..|++..+|++
T Consensus        19 ~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           19 VDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTI   95 (134)
T ss_dssp             HHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence            34566666554  38999999999999999999999999999988886 48899988866  566789999999999999


Q ss_pred             EEEeCCCCceE--EEEeCCCChHHHHHHHHhhhh
Q 019378          142 LVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       142 ~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +|+|+ +|+++  .++.|..++++|.+.|..+-.
T Consensus        96 ~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           96 LFFDG-QGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEECT-TSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEECC-CCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            99996 78887  789999999999877765543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.02  E-value=1.8e-09  Score=87.18  Aligned_cols=98  Identities=10%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      +...+|++||+|+++||..|+.+...+   ..+.+.+..++.++.++.+..+...++..|++..+|+++|+++ +|+++.
T Consensus        22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~-~G~~~~   97 (126)
T 2l57_A           22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDK-EGNKFY   97 (126)
T ss_dssp             TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECT-TCCEEE
T ss_pred             HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECC-CCCEEE
Confidence            456789999999999999999997543   4455555567999998854555678899999999999999997 799999


Q ss_pred             EEeCCCChHHHHHHHHhhhhcC
Q 019378          154 SWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ++.|..+.++|.+.|...+...
T Consensus        98 ~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           98 VHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             EEESCCCHHHHHHHHHHHCCCC
T ss_pred             EecCCCCHHHHHHHHHHHhccc
Confidence            9999999999988887776643

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.00  E-value=4e-09  Score=82.89  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++..+++.+|+++|+|+++||..|+.+...+   ..+.+.+..++.++.++.+.  ...++..|++.++|++++
T Consensus        10 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   84 (112)
T 1ep7_A           10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV   84 (112)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred             HHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEE
Confidence            4578899998888899999999999999999997543   34444455578888888865  456889999999999887


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  +|+.+.++.|. +++++.+.|...+
T Consensus        85 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           85 YK--DGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EE--TTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EE--CCeEEEEEcCC-CHHHHHHHHHHHh
Confidence            73  79999999998 8888887777665

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.96  E-value=7.9e-09  Score=81.79  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      -..+|++++     .+|+++|+|+++||..|+.+...+   .++.+.+..++.++.++.+..  ..++..|++..+|+++
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~   76 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLL   76 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEE
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEE
Confidence            346777777     789999999999999999997554   456666666889998888653  3578899999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++ . +|+.+.++.|..+.++|.+.|...+..
T Consensus        77 ~~-~-~G~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           77 VL-K-DGEVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             EE-E-TTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             EE-e-CCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            99 3 799999999999999988777666654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.95  E-value=8e-09  Score=83.71  Aligned_cols=99  Identities=12%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++..|+..+|+++|+|+++||..|+.+...      +.++.++  ++.++.++.+.  ...+++.|++..+|+
T Consensus        23 ~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt   94 (124)
T 1xfl_A           23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF------FADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPT   94 (124)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCE
Confidence            3468999999999999999999999999999999643      3344333  68888888864  457889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++|+.  +|+.+.++.| .+++.|.+.|..++
T Consensus        95 ~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           95 FMFLK--EGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEE--TTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEE--CCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            88873  7999999999 58888877776553

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.94  E-value=6.4e-09  Score=83.12  Aligned_cols=99  Identities=25%  Similarity=0.338  Sum_probs=77.7

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCC
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      ...-..+|++++..+  .+|++||+|+++||..|+.+..      .+.++.+.  ++.+..+|++.  ...++..|++..
T Consensus        15 ~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~   84 (116)
T 3qfa_C           15 QIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVDD--CQDVASECEVKS   84 (116)
T ss_dssp             CCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETTT--THHHHHHTTCCS
T ss_pred             CCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCcc
Confidence            334556777777554  7899999999999999999964      34444442  37888888764  457899999999


Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +|+++|+.  +|+.+.++.|. +++.|.+.|...
T Consensus        85 ~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           85 MPTFQFFK--KGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             SSEEEEES--SSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             ccEEEEEe--CCeEEEEEcCC-CHHHHHHHHHHh
Confidence            99999983  79999999998 999888877654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.94  E-value=6.2e-09  Score=80.99  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=78.4

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      -..+|++++    .++|+++|+|+++||..|+.+...+   ..+.+...+++.+..++.+.  ...++..|++.++|+++
T Consensus        10 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A           10 TEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDE--NQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             cHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEcccc--CHHHHHhcCcccCCEEE
Confidence            355677666    3489999999999999999996432   33444445578888877764  45689999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++.  +|+.+.++.|..+.++|...|...+
T Consensus        81 ~~~--~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IFV--NGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEE--TTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEc--CCcEEEeeeccCCHHHHHHHHHHHh
Confidence            993  7999999999999999988887664

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.93  E-value=8.6e-10  Score=89.37  Aligned_cols=96  Identities=4%  Similarity=-0.041  Sum_probs=79.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      .....||+|+.+||.+|+.|.+.|+....+....+ .+.+..+|++......++..|+|.+.|++++++  +|+.+.++.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~--~G~ev~Ri~   93 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMA--GDVESGRLE   93 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEE--TTEEEEEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEE--CCEEEeeec
Confidence            34789999999999999999998888877654443 355566777765555677899999999999998  799999999


Q ss_pred             CCCChHHHHHHHHhhhhcC
Q 019378          157 GMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       157 G~~~~~~~l~~L~~~l~~~  175 (342)
                      |+++++.|+..|...+...
T Consensus        94 G~~~~~~f~~~L~~~l~~~  112 (116)
T 3dml_A           94 GYPGEDFFWPMLARLIGQA  112 (116)
T ss_dssp             CCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhc
Confidence            9999999999999887754

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.92  E-value=1.1e-08  Score=80.94  Aligned_cols=92  Identities=21%  Similarity=0.337  Sum_probs=71.6

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+|++++..+  .+|+++|+|+++||.+|+.+...      +.++.+  .+++++.+|++.  ...++..|+|.++|+++
T Consensus         9 ~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~------~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~PT~~   78 (105)
T 3zzx_A            9 EDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPK------LEELSQSMSDVVFLKVDVDE--CEDIAQDNQIACMPTFL   78 (105)
T ss_dssp             HHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHH------HHHHHHHCTTEEEEEEETTT--CHHHHHHTTCCBSSEEE
T ss_pred             HHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcc------hhhhhhccCCeEEEEEeccc--CHHHHHHcCCCeecEEE
Confidence            4577777654  57999999999999999999643      333333  368888888764  56799999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      ++.  +|+.+.++.|. ++++|.+.|.
T Consensus        79 ~~~--~G~~v~~~~G~-~~~~l~~~i~  102 (105)
T 3zzx_A           79 FMK--NGQKLDSLSGA-NYDKLLELVE  102 (105)
T ss_dssp             EEE--TTEEEEEEESC-CHHHHHHHHH
T ss_pred             EEE--CCEEEEEEeCc-CHHHHHHHHH
Confidence            985  79999999994 7877766554

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.91  E-value=1.3e-08  Score=78.83  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      +-..+|++++     .+|+++|+|+++||..|+.+...+   ..+.+.+.+++.+..++.+.  ...++..|++..+|++
T Consensus         8 l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~   77 (106)
T 3die_A            8 VTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDE--NPSTAAKYEVMSIPTL   77 (106)
T ss_dssp             CCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSBSEE
T ss_pred             CCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCc--CHHHHHhCCCcccCEE
Confidence            3456777777     789999999999999999997544   55555666678888877764  4568899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +++.  +|+.+.++.|..+.+++...|...
T Consensus        78 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           78 IVFK--DGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             EEEe--CCeEEEEEeCCCCHHHHHHHHHHh
Confidence            9996  799999999999999988877654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.90  E-value=1.8e-08  Score=80.57  Aligned_cols=105  Identities=12%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      .+.-..+|++++..|+..+|+++|+|+++||..|+.+... |  .++.+-.. ++.+..++.+.  ...++..|++..+|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~P   89 (122)
T 2vlu_A           16 SVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPV-F--ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEAMP   89 (122)
T ss_dssp             EECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             eccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCccc
Confidence            3345678999999999999999999999999999999642 2  12333333 37888878765  45688999999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++++.  +|+.+.++.|.. ++.|...|...+.
T Consensus        90 t~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           90 TFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            988773  799999999988 8888887777654

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.90  E-value=2.1e-08  Score=78.47  Aligned_cols=91  Identities=15%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ..+|+++|+|+++||..|+.+...+   +.+.+...+++.+..++.+.  ...++..|++..+|+++++.  +|+.+.++
T Consensus        20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~   92 (111)
T 3gnj_A           20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEE--EKTLFQRFSLKGVPQILYFK--DGEYKGKM   92 (111)
T ss_dssp             TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSCEEEEEE--TTEEEEEE
T ss_pred             hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCc--ChhHHHhcCCCcCCEEEEEE--CCEEEEEE
Confidence            6789999999999999999997543   45555555678888888865  44688999999999999994  69999999


Q ss_pred             eCCCChHHHHHHHHhhhh
Q 019378          156 CGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~l~  173 (342)
                      .|..+.+.|...|...+.
T Consensus        93 ~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           93 AGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             ESSCCHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHhc
Confidence            999999999988887764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.89  E-value=7.4e-09  Score=80.36  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      .+.+.+|+++|+|+++||..|+.+...+   .++.+...+++.+..++.+.  ...++..|++.++|+++++.  +|+.+
T Consensus        12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~   84 (105)
T 1nsw_A           12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDE--NPETTSQFGIMSIPTLILFK--GGRPV   84 (105)
T ss_dssp             HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred             HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcC--CHHHHHHcCCccccEEEEEe--CCeEE
Confidence            4446789999999999999999997543   44555555668888888765  45688999999999999993  79999


Q ss_pred             EEEeCCCChHHHHHHHHhhh
Q 019378          153 RSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       153 ~~~~G~~~~~~~l~~L~~~l  172 (342)
                      .++.|..+++.|...|...+
T Consensus        85 ~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           85 KQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEESCCCHHHHHHHTTTTT
T ss_pred             EEEecCCCHHHHHHHHHHHh
Confidence            99999999988877665543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.89  E-value=1.6e-08  Score=80.01  Aligned_cols=101  Identities=17%  Similarity=0.306  Sum_probs=82.4

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++..|+..+|+++|+|+++||..|+.+..      .+.++.+.  ++.+..++.+.  ...++..|++..+|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A           13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMPT   84 (118)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBSE
T ss_pred             CHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCcE
Confidence            457899999999999999999999999999999964      34444443  68888877764  456889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++++.  +|+.+.++.| .+++.+...|..++..
T Consensus        85 ~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           85 FLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             EEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             EEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            98884  7999999999 5888888888877753

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.88  E-value=1.6e-08  Score=83.02  Aligned_cols=101  Identities=14%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++..|...+|+++|+|+++||..|+.+...      +.++.+  .++.++.++++.  ...++..|++..+|+
T Consensus        31 ~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~------l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt  102 (139)
T 3d22_A           31 TKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY------YIELSENYPSLMFLVIDVDE--LSDFSASWEIKATPT  102 (139)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEESE
T ss_pred             CHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH------HHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCcccE
Confidence            3578999999999999999999999999999999643      333333  368888888765  456889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++|+.  +|+++.++.|. ++++|...|...+..
T Consensus       103 ~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          103 FFFLR--DGQQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             EEEEE--TTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             EEEEc--CCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            98883  79999999998 888888888877764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.87  E-value=2.2e-08  Score=77.69  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++    +.+|+++|+|+++||..|+.+...+   ..+.+.+..++.++.++.+.  ...+++.|++..+|++++
T Consensus         8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   78 (109)
T 2yzu_A            8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDE--NPKTAMRYRVMSIPTVIL   78 (109)
T ss_dssp             TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCC--CHhHHHhCCCCcCCEEEE
Confidence            34566443    5689999999999999999997543   45555556678999888865  346889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  +|+.+.++.|..+.+.|...|...+.
T Consensus        79 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           79 FK--DGQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             Ee--CCcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            93  79999999999999998887776654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.87  E-value=2e-08  Score=78.99  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|.+.+   ...+|+++|+|+++||..|+.+...+   +.+.+.+..++.++.++.+.  ...++..|++..+|++++
T Consensus        14 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   85 (115)
T 1thx_A           14 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRL   85 (115)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEE
T ss_pred             ccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCC--CHHHHHHcCCCceeEEEE
Confidence            44565554   36789999999999999999997543   45555566678888888865  346889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      + + +|+.+.++.|..+.+.|...|...+.
T Consensus        86 ~-~-~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           86 V-K-GEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             E-E-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             E-c-CCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            9 3 79999999999999999888887765

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.87  E-value=2.3e-08  Score=77.57  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|.+++   ...+|+++|+|+++||..|+.+...+   .++.+.+..++.++.++.+..  ..++..|++..+|++++
T Consensus         9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~   80 (107)
T 2i4a_A            9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDN--PETPNAYQVRSIPTLML   80 (107)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTC--CHHHHHTTCCSSSEEEE
T ss_pred             hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCC--HHHHHhcCCCccCEEEE
Confidence            34565554   36789999999999999999997654   456666666899999888653  36888999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      + + +|+.+.++.|..+.+.+...|...
T Consensus        81 ~-~-~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           81 V-R-DGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             E-E-TTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             E-e-CCEEEEEecCCCCHHHHHHHHHhc
Confidence            9 3 799999999999999888777653

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.86  E-value=1.6e-08  Score=81.74  Aligned_cols=114  Identities=13%  Similarity=0.191  Sum_probs=86.6

Q ss_pred             HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHH
Q 019378           53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVC  130 (342)
Q Consensus        53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~  130 (342)
                      .+|.++..+  +-..+|++.+.   +.+|++||+|+++||..|+.+...+   +.+.+.+.+++.+..+|.+.  ...++
T Consensus        11 ~l~~~~~~v~~l~~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~l~   82 (130)
T 2dml_A           11 GLYSSSDDVIELTPSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADK--HQSLG   82 (130)
T ss_dssp             CSSCTTSSSEECCTTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTT--CHHHH
T ss_pred             cccCCCCCcEECCHHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCC--CHHHH
Confidence            345444333  33456666543   5689999999999999999997554   45555566678888888765  45688


Q ss_pred             HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ..|++..+|+++++++ .|.++..+.|..+.+.|++.|...+..+
T Consensus        83 ~~~~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~  126 (130)
T 2dml_A           83 GQYGVQGFPTIKIFGA-NKNKPEDYQGGRTGEAIVDAALSALRSG  126 (130)
T ss_dssp             HHHTCCSSSEEEEESS-CTTSCEECCSCCSHHHHHHHHHHHHHHS
T ss_pred             HHcCCCccCEEEEEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcC
Confidence            9999999999999986 4555788899999999999998888754

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.86  E-value=1.6e-08  Score=79.38  Aligned_cols=99  Identities=13%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++..|+..+|+++|+|+++||..|+.+...      +.++.+.  ++.++.++.+.  ...++..|++..+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~------l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A           11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI------FAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPT   82 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH------HHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTE
T ss_pred             cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH------HHHHHHhCCCcEEEEEEccc--cHHHHHhCCCCcccE
Confidence            3467899999998899999999999999999999643      3344433  68888888764  456888999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++++.  +|+.+.++.| .+++.|...|..++
T Consensus        83 ~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLK--DGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEE--TTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEe--CCEEEEEEec-CCHHHHHHHHHHhh
Confidence            99884  7999999999 68888888777665

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.86  E-value=2.1e-08  Score=78.12  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=78.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|.+.+   .+.+|+++|+|+++||..|+.+...+   ..+.+....++.+..++.+..  ..++..|++..+|++++
T Consensus         9 ~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~   80 (108)
T 2trx_A            9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--TTHHHHTTCCSSSEEEE
T ss_pred             hhhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCcccCEEEE
Confidence            34555444   46789999999999999999996543   345555556799998888653  35788999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  +|+.+.++.|..+++.|...|...+
T Consensus        81 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           81 FK--NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             Ee--CCEEEEEEecCCCHHHHHHHHHHhh
Confidence            93  7999999999999999888777654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.85  E-value=2.2e-08  Score=80.19  Aligned_cols=92  Identities=14%  Similarity=0.228  Sum_probs=74.0

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      ..+.+|++||+|+++||..|+.+...+   ..+.+-+..++.++.++.+.  ...+++.|++..+|+++++ + +|+++.
T Consensus        27 v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~-~G~~~~   99 (119)
T 1w4v_A           27 VVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDD--HTDLAIEYEVSAVPTVLAM-K-NGDVVD   99 (119)
T ss_dssp             TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTT--THHHHHHTTCCSSSEEEEE-E-TTEEEE
T ss_pred             HHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCC--CHHHHHHcCCCcccEEEEE-e-CCcEEE
Confidence            345789999999999999999997543   33444445578888888865  3468899999999999999 3 799999


Q ss_pred             EEeCCCChHHHHHHHHhhh
Q 019378          154 SWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++.|..+.+.|...|...+
T Consensus       100 ~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A          100 KFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEESCCCHHHHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHHHHh
Confidence            9999999999888777654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.85  E-value=2e-08  Score=82.46  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=74.7

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      .+|++||+|+++||..|+.+...+   ..+.+.+..++.++.++++.  ...++..|++..+|+++++++ .|+++ ...
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~~-~g~~~-~~~  122 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDK--EPELARDFGIQSIPTIWFVPM-KGEPQ-VNM  122 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEECS-SSCCE-EEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHHcCCCCcCEEEEEeC-CCCEE-EEe
Confidence            589999999999999999997544   55656666678888888865  456899999999999999986 67766 788


Q ss_pred             CCCChHHHHHHHHhhhh
Q 019378          157 GMVQPESLLEDLVPFMD  173 (342)
Q Consensus       157 G~~~~~~~l~~L~~~l~  173 (342)
                      |..+.+.|...|...+.
T Consensus       123 G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          123 GALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             SCCCHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHc
Confidence            99999999888877764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.85  E-value=3.4e-08  Score=82.04  Aligned_cols=103  Identities=12%  Similarity=0.132  Sum_probs=83.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      +-..+|++++    ..+|++||+|+++||..|+.+...+   .++.+.+..++.+..++.+.  ...++..|++.++|++
T Consensus        43 l~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           43 ATAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEA--EPALSTRFRIRSIPTI  113 (148)
T ss_dssp             CCTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             cCHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcC--CHHHHHHCCCCccCEE
Confidence            3456677666    7899999999999999999996433   34445555678888888765  4468899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +++.  +|+.+.++.|..+.+.|...|...+...
T Consensus       114 ~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  145 (148)
T 3p2a_A          114 MLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRD  145 (148)
T ss_dssp             EEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred             EEEE--CCeEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9995  7999999999999999999998888753

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.84  E-value=1.4e-08  Score=83.35  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=76.5

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      +.+|++||+|+++||..|+.+...+   ..+.+.+..++.+..++.+.  ...++..|++..+|+++++++ +|+.+ .+
T Consensus        36 ~~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~-~G~~~-~~  108 (136)
T 2l5l_A           36 EGDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEK--EQELAGAFGIRSIPSILFIPM-EGKPE-MA  108 (136)
T ss_dssp             CCSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSCEEEEECS-SSCCE-EE
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCC--CHHHHHHcCCCCCCEEEEECC-CCcEE-EE
Confidence            3579999999999999999997543   34555555678888888865  346889999999999999986 68877 67


Q ss_pred             eCCCChHHHHHHHHhhhhcCC
Q 019378          156 CGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      .|..+.+.|...|...+....
T Consensus       109 ~G~~~~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A          109 QGAMPKASFKKAIDEFLLKKE  129 (136)
T ss_dssp             ESCCCHHHHHHHHHHHHTSCT
T ss_pred             eCCCCHHHHHHHHHHHhhccC
Confidence            899999999988888877543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.84  E-value=2.8e-08  Score=77.27  Aligned_cols=92  Identities=14%  Similarity=0.254  Sum_probs=74.0

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      ....+|+++|+|+++||..|+.+...+   ..+.+-+..++.+..++.+.  ...++..|++.++|+++++.  +|+.+.
T Consensus        15 ~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~   87 (107)
T 1dby_A           15 VLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVFK--GGKKCE   87 (107)
T ss_dssp             TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEES--SSSEEE
T ss_pred             HhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCC--CHHHHHHCCCCcCCEEEEEe--CCEEEE
Confidence            345789999999999999999997543   44555555678888888765  34688899999999988873  799999


Q ss_pred             EEeCCCChHHHHHHHHhhh
Q 019378          154 SWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++.|..+.+++.+.|..++
T Consensus        88 ~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           88 TIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEESCCCHHHHHHHHHHHC
T ss_pred             EEeCCCCHHHHHHHHHHHh
Confidence            9999999998888777654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.82  E-value=5.3e-08  Score=74.68  Aligned_cols=98  Identities=14%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++    ..+|+++|+|+++||..|+.+...+   ..+.+.+.+ +.+..++.+.  ...++..|++.++|++++
T Consensus         6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~   75 (104)
T 2e0q_A            6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDE--NPDIAARYGVMSLPTVIF   75 (104)
T ss_dssp             TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTT--CHHHHHHTTCCSSCEEEE
T ss_pred             HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCC--CHHHHHhCCccccCEEEE
Confidence            45677776    4689999999999999999996432   223333333 7788777764  356889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  +|+.+.++.|..+.+.+...|...+.
T Consensus        76 ~~--~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           76 FK--DGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EE--CCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            93  79999999999999999888877664

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.82  E-value=1.8e-08  Score=78.71  Aligned_cols=87  Identities=13%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      +++|+++|+|+++||.+|+.+..      .+.++.+.  ++.+..+|++..  ..++..|++.++|+++++.  +|+.+.
T Consensus        16 ~~~~~vlv~f~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~   85 (105)
T 4euy_A           16 EEQQLVLLFIKTENCGVCDVMLR------KVNYVLENYNYVEKIEILLQDM--QEIAGRYAVFTGPTVLLFY--NGKEIL   85 (105)
T ss_dssp             TCSSEEEEEEEESSCHHHHHHHH------HHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TTEEEE
T ss_pred             hcCCCEEEEEeCCCCcchHHHHH------HHHHHHHHcCCceEEEEECCCC--HHHHHhcCCCCCCEEEEEe--CCeEEE
Confidence            57899999999999999999863      34444443  688888888653  3688999999999999996  799999


Q ss_pred             EEeCCCChHHHHHHHHhhh
Q 019378          154 SWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++.|..+.++|.+.|..++
T Consensus        86 ~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           86 RESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEESSCCHHHHHHHHHTTC
T ss_pred             EEeCCcCHHHHHHHHHHhh
Confidence            9999999999988887654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.82  E-value=5e-09  Score=89.40  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             HHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHH
Q 019378           49 DNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKK  128 (342)
Q Consensus        49 ~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~  128 (342)
                      +.....|++...  + .++++++..+..++|++||+|+.+||.+|..+.. +|..-....-.+-.|+...++.+...   
T Consensus        20 ~~~~~~~~~~i~--w-~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~---   92 (164)
T 1sen_A           20 NGLGKGFGDHIH--W-RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP---   92 (164)
T ss_dssp             --CCTTSCTTSC--B-CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC---
T ss_pred             cccccccccccc--c-cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH---
Confidence            344455555443  3 7899999999999999999999999999999976 34332111112346776655543321   


Q ss_pred             HHHhCCC--CCCcEEEEEeCCCCceEEEEeCC----------CChHHHHHHHHhhhhcC
Q 019378          129 VCTYYKL--DSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGG  175 (342)
Q Consensus       129 ~~~~y~v--~~~P~l~ii~p~tG~~l~~~~G~----------~~~~~~l~~L~~~l~~~  175 (342)
                      ++..|.+  ..+|+++|+|+ +|+++.++.|.          .++++|+..|...++..
T Consensus        93 ~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~  150 (164)
T 1sen_A           93 KDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL  150 (164)
T ss_dssp             SCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence            4566777  66999999996 78888888884          78999999999888753

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.82  E-value=1.7e-08  Score=81.86  Aligned_cols=117  Identities=6%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             chhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh
Q 019378           45 DSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS  124 (342)
Q Consensus        45 ~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~  124 (342)
                      +++...+..+|.+- +.+- ..-.+.+..+..++|++||+|+++||..|+.+...+   +.+.+.+..++.+..++.+. 
T Consensus        11 ~~f~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~-   84 (128)
T 3ul3_B           11 NRFDKYYLRMFKKV-PRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDK-   84 (128)
T ss_dssp             ----------------CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGG-
T ss_pred             HHHHHHHHHHhccC-Cccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCC-
Confidence            44455566666542 2222 122233555667899999999999999999997554   45666666789999888765 


Q ss_pred             hHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          125 EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       125 eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                       ...++..|++.++|+++++.  .|+.+.++.|..+.++|.+.|.+
T Consensus        85 -~~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           85 -NESLARKFSVKSLPTIILLK--NKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             -CHHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHTT
T ss_pred             -CHHHHHHcCCCCcCEEEEEE--CCEEEEEecCCCCHHHHHHHHHh
Confidence             34788999999999999994  69999999999999998876653

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.81  E-value=3.8e-08  Score=76.12  Aligned_cols=96  Identities=27%  Similarity=0.361  Sum_probs=73.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++..+  .+|+++|+|+++||..|+.+...+   ..+.+... ++.+..++.+.  ...++..|++.++|+++++
T Consensus         9 ~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~   80 (105)
T 3m9j_A            9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDD--CQDVASESEVKSMPTFQFF   80 (105)
T ss_dssp             HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhh--hHHHHHHcCCCcCcEEEEE
Confidence            4556665433  689999999999999999996432   22333222 47888877764  4578899999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      .  .|+.+.++.|. +++.+.+.|...
T Consensus        81 ~--~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           81 K--KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             E--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             E--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence            5  68999999998 998888777654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.80  E-value=7.8e-08  Score=74.34  Aligned_cols=97  Identities=14%  Similarity=0.267  Sum_probs=74.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++..  ..+|+++|+|+++||..|+.+...+   .++.+.+..++.++.++.+.  ...++..|++..+|+++++
T Consensus         9 ~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            9 ADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             HHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccc--hHHHHHHcCCCcccEEEEE
Confidence            456666643  4789999999999999999997542   23444555678999888865  4568899999999998887


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      .  +|+.+.++.| .+++.+.+.|...
T Consensus        82 ~--~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           82 K--NGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             E--TTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             c--CCcEEEEEcC-CCHHHHHHHHHHh
Confidence            4  6999999999 6888877766543

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.80  E-value=4.5e-08  Score=77.17  Aligned_cols=89  Identities=18%  Similarity=0.281  Sum_probs=68.8

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCC
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPIT  148 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~t  148 (342)
                      +..+.+++|+++|+|+++||..|+.+...      +.++.+  .++.+..++++.  ...++..|++..+|++++++  +
T Consensus        17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~------l~~l~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~   86 (109)
T 3f3q_A           17 FDSAIAQDKLVVVDFYATWCGPCKMIAPM------IEKFSEQYPQADFYKLDVDE--LGDVAQKNEVSAMPTLLLFK--N   86 (109)
T ss_dssp             HHHHTTSSSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--T
T ss_pred             HHHHHhcCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCccCEEEEEE--C
Confidence            34455679999999999999999999743      334333  246777777754  45688999999999999997  6


Q ss_pred             CceEEEEeCCCChHHHHHHHHh
Q 019378          149 GQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       149 G~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      |+.+.++.|. +++.|.+.|..
T Consensus        87 G~~~~~~~G~-~~~~l~~~i~~  107 (109)
T 3f3q_A           87 GKEVAKVVGA-NPAAIKQAIAA  107 (109)
T ss_dssp             TEEEEEEESS-CHHHHHHHHHH
T ss_pred             CEEEEEEeCC-CHHHHHHHHHh
Confidence            9999999998 77777666654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.79  E-value=2.4e-08  Score=81.41  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      -..+|++.+   .+.+|++||+|+++||..|+.+...+   ..+.+.+..++.++.++.+..  ..++..|++..+|+++
T Consensus        28 ~~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~   99 (128)
T 2o8v_B           28 TDDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLL   99 (128)
T ss_dssp             CTTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTC--CTTSGGGTCCSSSEEE
T ss_pred             ChhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCccCEEE
Confidence            345666544   46789999999999999999996543   345555556799998888653  3578899999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++ + +|+.+.++.|..+.++|...|...+
T Consensus       100 ~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          100 LF-K-NGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EE-E-TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EE-e-CCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            99 3 7999999999999999888877654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.78  E-value=3.6e-08  Score=77.44  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      .+.+|+++|+|+++||..|+.+...+   .++.+.+..++.++.++.+.  ...++..|++..+|+++++.  +|+.+.+
T Consensus        20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~~--~G~~~~~   92 (112)
T 1t00_A           20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDE--NPGTAAKYGVMSIPTLNVYQ--GGEVAKT   92 (112)
T ss_dssp             TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEEE
T ss_pred             hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCC--CHHHHHhCCCCcccEEEEEe--CCEEEEE
Confidence            35689999999999999999996543   34444455578888888765  34688999999999988874  7999999


Q ss_pred             EeCCCChHHHHHHHHhhhh
Q 019378          155 WCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       155 ~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.|..+.+.|...|...+.
T Consensus        93 ~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           93 IVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EESCCCHHHHHHHTHHHHC
T ss_pred             EeCCCCHHHHHHHHHHHhh
Confidence            9999999999887776653

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.77  E-value=4.3e-08  Score=75.73  Aligned_cols=97  Identities=16%  Similarity=0.285  Sum_probs=76.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++.   ..+|+++|+|+++||..|+.+...+   ..+.+-+..++.+..++.+.  ...++..|++..+|+++++
T Consensus         8 ~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            8 SSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             hhHHHHHh---cCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcc--hHHHHHhCCCCcccEEEEE
Confidence            45555443   4689999999999999999997543   45555566678888888764  3568899999999998887


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      .  +|+.+.++.|..+.+.|...|...
T Consensus        80 ~--~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           80 K--NGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             E--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             e--CCeEEEEEecCCCHHHHHHHHHhh
Confidence            4  799999999999999888777654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.77  E-value=9.8e-08  Score=75.26  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=73.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++    +.+|++||+|+++||..|+.+...+   ..+.+.. .++.++.++.+.  ...++..|++..+|++++
T Consensus        16 ~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   85 (112)
T 1syr_A           16 QAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTY-TKMVFIKVDVDE--VSEVTEKENITSMPTFKV   85 (112)
T ss_dssp             HHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--THHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHc-CCCEEEEEECCC--CHHHHHHcCCCcccEEEE
Confidence            45666666    3789999999999999999996543   2233322 258888888765  346889999999999887


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  +|+.+.++.|. +++.|...|...+
T Consensus        86 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           86 YK--NGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EE--TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EE--CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            74  79999999998 8888877766543

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.76  E-value=6.2e-08  Score=81.78  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=76.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      +.+|++||+|+++||..|+.+...+   +++.+-+..++.+..+|.+..  ..++..|++.++|+++++.  +|+.+.++
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~G~~~~~~  134 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILFH--KGRELARA  134 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEEE--TTEEEEEE
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEEe--CCeEEEEe
Confidence            7889999999999999999997543   355555666788888888653  4688999999999999984  79999999


Q ss_pred             eCCCChHHHHHHHHhhhh
Q 019378          156 CGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~l~  173 (342)
                      .|..+.+.|...|...+.
T Consensus       135 ~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          135 AGARPASELVGFVRGKLG  152 (155)
T ss_dssp             ESCCCHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHhc
Confidence            999999999888887765

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.76  E-value=4.2e-08  Score=80.98  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCc
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQ  150 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~  150 (342)
                      .+.....+|++||+|+++||..|+.+...+   +.+.+.+..++.+..++.+.  ...++..|++..+|+++|+.  +|+
T Consensus        17 ~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~G~   89 (140)
T 3hz4_A           17 SQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIAT--NPWTAEKYGVQGTPTFKFFC--HGR   89 (140)
T ss_dssp             HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTT--CHHHHHHHTCCEESEEEEEE--TTE
T ss_pred             HHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCc--CHhHHHHCCCCcCCEEEEEe--CCc
Confidence            335556799999999999999999997544   56666667778888888765  35688999999999999984  799


Q ss_pred             eEEEEeCCCChHHHHHHHHhhhhc
Q 019378          151 KMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       151 ~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .+.++.|..+++.|...|...+..
T Consensus        90 ~~~~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           90 PVWEQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCHHHHHHHHHHHhcc
Confidence            999999999999999999888864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.76  E-value=2.6e-08  Score=79.22  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=73.9

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      +...+|++||+|+++||..|+.+...+   ..+.+.+..++.+..++.+.  ...++..|++..+|+++++.  +|+.+.
T Consensus        26 ~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~--~g~~~~   98 (121)
T 2i1u_A           26 VLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDT--NPETARNFQVVSIPTLILFK--DGQPVK   98 (121)
T ss_dssp             TTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TTEEEE
T ss_pred             HHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCC--CHHHHHhcCCCcCCEEEEEE--CCEEEE
Confidence            345789999999999999999997543   45555555678888888865  34688999999999998885  799999


Q ss_pred             EEeCCCChHHHHHHHHhhh
Q 019378          154 SWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++.|..+.+.|...|...+
T Consensus        99 ~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           99 RIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EEESCCCHHHHHHHTCSCC
T ss_pred             EecCCCCHHHHHHHHHHHH
Confidence            9999999998877665544

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=5.7e-08  Score=78.56  Aligned_cols=101  Identities=11%  Similarity=0.173  Sum_probs=81.0

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      ..+|.+++   .+.+|++||+|+++||..|+.+...+   ..+.+.+.    .++.+..+|.+.  ...++..|++..+|
T Consensus        14 ~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P   85 (133)
T 1x5d_A           14 DDSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATV--NQVLASRYGIRGFP   85 (133)
T ss_dssp             TTHHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTT--CCHHHHHHTCCSSS
T ss_pred             HhhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCC--CHHHHHhCCCCeeC
Confidence            34555543   35689999999999999999997544   34555555    678898888765  34688899999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +++|+++  |+.+.++.|..+.+.|...|...+..
T Consensus        86 t~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           86 TIKIFQK--GESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             EEEEEET--TEEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEEeC--CCceEEecCCCCHHHHHHHHHHHhhc
Confidence            9999996  88888999999999999999888875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.76  E-value=5.9e-08  Score=78.84  Aligned_cols=96  Identities=14%  Similarity=0.239  Sum_probs=74.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++    ..+|++||+|+++||..|+.+...+   ..+.+.. .++.++.++++.  ...++..|++..+|+++|+
T Consensus        28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERPM---EKIAYEF-PTVKFAKVDADN--NSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence            4566655    6899999999999999999996432   1222222 368888888864  4568899999999998887


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .  +|+.+.++.| .+++.|.+.|...+.
T Consensus        98 ~--~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           98 R--SGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             E--TTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             e--CCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            3  7999999999 688888888877765

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.76  E-value=6.1e-08  Score=77.64  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ..|+..+..+...+.+|++||+|+++||..|+.+...+   ..+.+.+ .++.+..++.+..  ..++..|++..+|+++
T Consensus         8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~   81 (118)
T 2f51_A            8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPALF   81 (118)
T ss_dssp             ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred             ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEEE
Confidence            45677776666677899999999999999999997543   3444444 6788888888653  5688999999999999


Q ss_pred             EEeCC--CCceEEEEeCCCChHHHHHHHHhhh
Q 019378          143 VVDPI--TGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       143 ii~p~--tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +++..  .|+.+.++.|..+ +++...+..+.
T Consensus        82 ~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~  112 (118)
T 2f51_A           82 FVKKEGNEIKTLDQFVGADV-SRIKADIEKFK  112 (118)
T ss_dssp             EEEEETTEEEEEEEEESCCH-HHHHHHHHHHC
T ss_pred             EEeCCCCcceEEEeecCCCH-HHHHHHHHHhh
Confidence            99731  2788999999764 44555554443

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.75  E-value=6e-08  Score=76.24  Aligned_cols=100  Identities=15%  Similarity=0.338  Sum_probs=72.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      .+|++++.. +..+|+++|+|+++||..|+.+...+   ..+.+-+ ..++.+..++.+.  ...++..|++.++|++++
T Consensus         9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   82 (112)
T 3d6i_A            9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADE--NSEISELFEISAVPYFII   82 (112)
T ss_dssp             HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEeccc--CHHHHHHcCCCcccEEEE
Confidence            456666654 45689999999999999999996432   2222222 2368888888865  346889999999999998


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  .|+.+.++.|. .+++|.+.|...+.
T Consensus        83 ~~--~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           83 IH--KGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             EE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             EE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            84  79999999997 55567776666553

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.72  E-value=1.5e-07  Score=74.91  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=69.4

Q ss_pred             HHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378           68 EKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        68 ~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      .+.+..+.+.+|+++|+|+++||..|+.+...+   ..+.+-.. ++.+..++++.  ...+++.|++..+|+++|+.  
T Consensus        20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~-~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--   91 (114)
T 2oe3_A           20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHL---TKLIQAYP-DVRFVKCDVDE--SPDIAKECEVTAMPTFVLGK--   91 (114)
T ss_dssp             HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHH---HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSBSEEEEEE--
T ss_pred             HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC-CCEEEEEECCC--CHHHHHHCCCCcccEEEEEe--
Confidence            344555666899999999999999999986432   22322222 37788877764  34688999999999998773  


Q ss_pred             CCceEEEEeCCCChHHHHHHHH
Q 019378          148 TGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      +|+.+.++.|.. ++.|.+.|.
T Consensus        92 ~G~~~~~~~G~~-~~~l~~~l~  112 (114)
T 2oe3_A           92 DGQLIGKIIGAN-PTALEKGIK  112 (114)
T ss_dssp             TTEEEEEEESSC-HHHHHHHHH
T ss_pred             CCeEEEEEeCCC-HHHHHHHHH
Confidence            799999999987 777766554

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.71  E-value=7.4e-08  Score=77.34  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=70.7

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      +...+|+++|+|+++||..|..+...+   ..+.+.+.. ++.++.++.+.  ...++..|++..+|+++++.  +|+.+
T Consensus        29 ~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~--~G~~~  101 (121)
T 2j23_A           29 VTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDE--QSQIAQEVGIRAMPTFVFFK--NGQKI  101 (121)
T ss_dssp             HHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTT--CHHHHHHHTCCSSSEEEEEE--TTEEE
T ss_pred             HHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcC--CHHHHHHcCCCcccEEEEEE--CCeEE
Confidence            337899999999999999999997543   233333333 38888888865  34688999999999999885  79999


Q ss_pred             EEEeCCCChHHHHHHHHhhh
Q 019378          153 RSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       153 ~~~~G~~~~~~~l~~L~~~l  172 (342)
                      .++.|. ++++|...|...+
T Consensus       102 ~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A          102 DTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEESS-CHHHHHHHHHHHT
T ss_pred             eeEcCC-CHHHHHHHHHHhh
Confidence            999998 8888877776554

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.71  E-value=2.1e-07  Score=72.45  Aligned_cols=94  Identities=13%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCChhHHHHHHhCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTSEGKKVCTYYKL  135 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~eg~~~~~~y~v  135 (342)
                      +-..+|++++.     ++++||+|+++||..|+.+.      +.+.++.+.      ++.+..+|.+.  ...++..|++
T Consensus        10 l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v   76 (111)
T 3uvt_A           10 LTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTA--ERNICSKYSV   76 (111)
T ss_dssp             CCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTT--CHHHHHHTTC
T ss_pred             cChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEeccc--cHhHHHhcCC
Confidence            44567888776     78999999999999999985      455666553      57888887764  4568999999


Q ss_pred             CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      ..+|+++++.  +|+.+.++.|..+.+.|...|..
T Consensus        77 ~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~  109 (111)
T 3uvt_A           77 RGYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS  109 (111)
T ss_dssp             CSSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred             CcccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence            9999999884  68999999999999998877654

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.71  E-value=1e-07  Score=78.01  Aligned_cols=100  Identities=11%  Similarity=0.226  Sum_probs=78.5

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      -..+|++++    ..+|++||+|+++||..|+.+...+   ..+.+.+.+.   +++..+|.+.  ...++..|++..+|
T Consensus        23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~P   93 (140)
T 2dj1_A           23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATS--ASMLASKFDVSGYP   93 (140)
T ss_dssp             CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTT--CHHHHHHTTCCSSS
T ss_pred             ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCcc--cHHHHHHCCCCccC
Confidence            456677655    4689999999999999999996543   2344444443   8888877764  35688999999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +++|+.  +|+ +.++.|..+.+.|...|...+..
T Consensus        94 t~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           94 TIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             EEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSS
T ss_pred             eEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCC
Confidence            999994  688 77888999999999988888875

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.70  E-value=1.5e-07  Score=73.36  Aligned_cols=98  Identities=9%  Similarity=0.140  Sum_probs=72.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++..  ..+|+++|+|+++||..|+.+...+   ..+.+-. .++.+..+|.+.  ...++..|++.++|++++
T Consensus         9 ~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   80 (107)
T 1gh2_A            9 DPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQ--CQGTAATNNISATPTFQF   80 (107)
T ss_dssp             GGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECcc--CHHHHHhcCCCcccEEEE
Confidence            4567777654  5789999999999999999996432   2222222 368888888865  456889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  +|+.+.++.|. .+++|...|...+
T Consensus        81 ~~--~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           81 FR--NKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence            84  69999999995 4455666665543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.70  E-value=1.3e-07  Score=77.19  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-------------------------hh
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-------------------------SE  125 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-------------------------~e  125 (342)
                      +..+.-.+|+++|+|+++||..|..+...+   ..+.+-+.+.+.++.++.+.                         ..
T Consensus        22 ~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   98 (148)
T 2b5x_A           22 TREQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDS   98 (148)
T ss_dssp             CHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECS
T ss_pred             cchhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECC
Confidence            344455789999999999999999886432   23444444447777777653                         12


Q ss_pred             HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ...+++.|++..+|+++|||+ +|+++.++.|..+++++...|...+..
T Consensus        99 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A           99 DHALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             SCHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             chhHHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            246788999999999999997 799999999999999999888887763

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.69  E-value=1.2e-07  Score=75.45  Aligned_cols=88  Identities=8%  Similarity=0.069  Sum_probs=65.1

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC--hhHHHHHHhCCCCCCcEEEEEeCC
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT--SEGKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s--~eg~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      .+...+++++|+|+++||.+|+.+...      +.++.+   ..+++..++...  .+...++..|++.++|+++++.  
T Consensus        24 ~~~~~~~~~~v~f~a~wC~~C~~~~p~------l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~--   95 (118)
T 1zma_A           24 EALDKKETATFFIGRKTCPYCRKFAGT------LSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT--   95 (118)
T ss_dssp             HHHHTTCCEEEEEECTTCHHHHHHHHH------HHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE--
T ss_pred             HHHhCCCeEEEEEECCCCccHHHHHHH------HHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEE--
Confidence            344678999999999999999999643      333333   345554332221  3345788999999999999986  


Q ss_pred             CCceEEEEeCCCChHHHHHHH
Q 019378          148 TGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      +|+.+.++.|..+++.|...|
T Consensus        96 ~G~~~~~~~G~~~~~~l~~~l  116 (118)
T 1zma_A           96 DGQINVRCDSSMSAQEIKDFA  116 (118)
T ss_dssp             TTEEEEECCTTCCHHHHHHHH
T ss_pred             CCEEEEEecCCCCHHHHHHHh
Confidence            689889999999998887655

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.68  E-value=2e-07  Score=73.97  Aligned_cols=94  Identities=16%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      .+|.+++..  ..+|+++|+|+++||..|+.+..      .+.++.+. ++.+..+|.+.  ...+++.|++.++|++++
T Consensus        22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIA   91 (117)
T ss_dssp             THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEE
Confidence            667777653  37899999999999999999964      34455444 67888877764  456889999999999888


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +.  +|+.+.++.| .+++.+.+.|...
T Consensus        92 ~~--~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           92 IK--NGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             Ee--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence            84  7999999999 5888877766554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.67  E-value=9.3e-08  Score=76.29  Aligned_cols=97  Identities=8%  Similarity=0.019  Sum_probs=76.7

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~  151 (342)
                      ......+|++||+|+++||..|+.+...+   ..+.+.+..++.+..++.+..  ..++..|++.++|+++++++ .|. 
T Consensus        15 ~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~~-~~~-   87 (122)
T 3aps_A           15 EKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAY--PQTCQKAGIKAYPSVKLYQY-ERA-   87 (122)
T ss_dssp             HHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEEE-EGG-
T ss_pred             HHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCC--HHHHHHcCCCccceEEEEeC-CCc-
Confidence            44456789999999999999999997543   455566666899998888653  46889999999999999985 334 


Q ss_pred             EEEEeCC----CChHHHHHHHHhhhhcC
Q 019378          152 MRSWCGM----VQPESLLEDLVPFMDGG  175 (342)
Q Consensus       152 l~~~~G~----~~~~~~l~~L~~~l~~~  175 (342)
                      +.++.|.    .+++.|...|...+...
T Consensus        88 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~  115 (122)
T 3aps_A           88 KKSIWEEQINSRDAKTIAALIYGKLETL  115 (122)
T ss_dssp             GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred             cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence            6667775    79999999888888754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.67  E-value=3.1e-07  Score=70.62  Aligned_cols=94  Identities=14%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+|++++..  ..+|+++|+|+++||..|+.+...      +.++.+.  ++.++.++.+.  ...++..|++..+|+++
T Consensus         8 ~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~   77 (104)
T 2vim_A            8 ADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQ--NEEAAAKYSVTAMPTFV   77 (104)
T ss_dssp             HHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccC--CHHHHHHcCCccccEEE
Confidence            345555532  378999999999999999999643      3333332  68888888764  34688999999999988


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ++.  +|+.+.++.| .+++.|.+.|..+
T Consensus        78 ~~~--~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           78 FIK--DGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence            886  7999999999 5888887766654

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.67  E-value=1.6e-07  Score=77.62  Aligned_cols=96  Identities=13%  Similarity=0.171  Sum_probs=73.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh--------------------HHHHHHhCC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE--------------------GKKVCTYYK  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e--------------------g~~~~~~y~  134 (342)
                      -.+|++||+|.++||..|..+...+   ..+.+-+. .++.++.++.+...                    ...++..|+
T Consensus        24 ~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (151)
T 2f9s_A           24 LKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD  100 (151)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC
Confidence            3689999999999999999876432   12333333 36777777775432                    235778899


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +..+|+++|||+ +|+++.++.|..+.+.+...|...+...
T Consensus       101 v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A          101 VSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             CCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             CCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence            999999999997 7999999999999999999888887653

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.67  E-value=1.1e-07  Score=78.79  Aligned_cols=95  Identities=19%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChh----------------------HHH
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSE----------------------GKK  128 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~e----------------------g~~  128 (342)
                      .-.+|++||+|..+||..|..+..      .+.++.    ..++.++.++.++.+                      ...
T Consensus        21 ~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (151)
T 3raz_A           21 SLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRN   94 (151)
T ss_dssp             GCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHH
T ss_pred             HhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHH
Confidence            347899999999999999998753      344433    346888888887543                      345


Q ss_pred             HHHhCC--CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          129 VCTYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       129 ~~~~y~--v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      ++..|+  +..+|+++|||+ .|+++.++.|..+++++.+.|.......+
T Consensus        95 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A           95 FMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             HHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             HHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            677888  899999999997 79999999999999999988888877543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.64  E-value=2.3e-07  Score=81.84  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=81.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|+.++    ..+|++||+|+++||..|..+...+   .++.+.+..++.+..++++.  ...++..|++.++|+++|+
T Consensus       105 ~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~  175 (210)
T 3apq_A          105 REFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGD--DRMLCRMKGVNSYPSLFIF  175 (210)
T ss_dssp             HHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCc--cHHHHHHcCCCcCCeEEEE
Confidence            3455544    7789999999999999999997543   45555566678898888765  3568899999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                        ..|+.+.++.|..+.+.|...|...+...
T Consensus       176 --~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          176 --RSGMAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             --CTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             --ECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence              37898999999999999999888888753

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.64  E-value=1.7e-07  Score=77.34  Aligned_cols=96  Identities=10%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH---------------------HHHHHhCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG---------------------KKVCTYYK  134 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg---------------------~~~~~~y~  134 (342)
                      .+|++||+|+++||..|..+...+   ..+.+-+. .++.++.++.+....                     ..++..|+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL  105 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence            589999999999999998875432   12222232 358888888776431                     25778899


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      +..+|+++||++ +|+++.+..|..+.+++...|...+..+.
T Consensus       106 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  146 (152)
T 2lja_A          106 INGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEG  146 (152)
T ss_dssp             CCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred             cCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence            999999999997 69999888898999999999988887654

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.64  E-value=1.4e-07  Score=79.09  Aligned_cols=99  Identities=16%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      +|++++.  ...+|++||+|+.+||.+|+.+...+   ..+.+-+.+++.++.+|++.  ...++..|++.++|+++++.
T Consensus        13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~   85 (149)
T 3gix_A           13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFF   85 (149)
T ss_dssp             HHHHHHH--HCCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEE
Confidence            4444443  25799999999999999999996432   12333334459999988864  44688999999999999554


Q ss_pred             CCCCceE---------EEEeC-CCChHHHHHHHHhhhh
Q 019378          146 PITGQKM---------RSWCG-MVQPESLLEDLVPFMD  173 (342)
Q Consensus       146 p~tG~~l---------~~~~G-~~~~~~~l~~L~~~l~  173 (342)
                        .|+.+         .++.| ..+.++|...|..++.
T Consensus        86 --~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           86 --NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             --TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             --CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence              68988         88999 8899999888887765

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.63  E-value=1.2e-07  Score=84.66  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++   .+.+|++||+|+++||..|+.+...+   ..+.+.+..++.+..++++..  ..++..|++..+|+++|
T Consensus        19 ~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~   90 (222)
T 3dxb_A           19 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL   90 (222)
T ss_dssp             TTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEEE
T ss_pred             HHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEEE
Confidence            45666654   45799999999999999999997543   455555566788888887653  35788999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +.  .|+.+.++.|..+.+.|...|...+...
T Consensus        91 ~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           91 FK--NGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             EE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence            96  6999999999999999999998888754

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.63  E-value=1.1e-07  Score=77.49  Aligned_cols=88  Identities=11%  Similarity=0.085  Sum_probs=68.4

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh-----------------------hHHHHHHh
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS-----------------------EGKKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~-----------------------eg~~~~~~  132 (342)
                      .+|++||+|+++||..|..+...+   ..+.+-+. .++.++.++.+..                       ....++..
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE  109 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence            789999999999999999986432   22223333 4678888777541                       13367889


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      |++..+|+++|||+ +|+++..+.|..+.+.|...|
T Consensus       110 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          110 YHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             TTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred             cCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence            99999999999997 799999999999999887655

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.63  E-value=1.9e-07  Score=74.77  Aligned_cols=91  Identities=14%  Similarity=0.252  Sum_probs=68.8

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--------------------------hhHHHH
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--------------------------SEGKKV  129 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--------------------------~eg~~~  129 (342)
                      -.+|++||+|+++||..|..+...+   ..+.+-...++.++.++...                          .....+
T Consensus        20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   96 (138)
T 4evm_A           20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL   96 (138)
T ss_dssp             GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence            3689999999999999999876443   23333344577777773211                          112357


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      ++.|++..+|+++|||+ +|+++.++.|..+++++...|..
T Consensus        97 ~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           97 LETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             HHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred             HHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence            78999999999999997 79999999999999998877754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.63  E-value=1.8e-07  Score=86.13  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=81.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      +-..+|++.+  ....+|+++|+|+.+||.+|+.+...+   +.+.+-..+++++..+|++.  ...++..|+|.++|++
T Consensus        12 ~~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~   84 (287)
T 3qou_A           12 INESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDA--EQMIAAQFGLRAIPTV   84 (287)
T ss_dssp             CCTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTT--CHHHHHTTTCCSSSEE
T ss_pred             CCHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCcc--CHHHHHHcCCCCCCeE
Confidence            3456788755  234589999999999999999996433   34555555679999988875  3578999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +++.  .|+.+.++.|..+.+.+...|...+
T Consensus        85 ~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           85 YLFQ--NGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            9994  7999999999999988887777665

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.62  E-value=1.6e-07  Score=75.41  Aligned_cols=90  Identities=14%  Similarity=0.117  Sum_probs=69.1

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCCh---------------------hHHHHHHh
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS---------------------EGKKVCTY  132 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~---------------------eg~~~~~~  132 (342)
                      -.+|+++|+|+++||..|..+..      .+.++.+.  ++.++.++.+..                     ....++..
T Consensus        23 ~~~k~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   96 (136)
T 1zzo_A           23 LLGKPAVLWFWAPWCPTCQGEAP------VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN   96 (136)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred             hCCCeEEEEEEcCCChhHHHHHH------HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence            36899999999999999999753      33333322  677777776541                     23457788


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |++..+|+++||++ +|+++ .+.|..+.+++...|...+.
T Consensus        97 ~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           97 FGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             TTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             cCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            99999999999997 78988 99999999999888877654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.62  E-value=3.4e-07  Score=76.62  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=76.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+|++++..+  .+|++||+|+++||..|+.+...      +.++.+  .++.+..++++.  ...++..|++..+|++
T Consensus        20 ~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~   89 (153)
T 2wz9_A           20 AGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEV------MAELAKELPQVSFVKLEAEG--VPEVSEKYEISSVPTF   89 (153)
T ss_dssp             HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHH------HHHHHHHcCCeEEEEEECCC--CHHHHHHcCCCCCCEE
Confidence            35566655432  48999999999999999998643      333333  368888888865  3468899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +|++  +|+.+.++.|. +++++...|...+..
T Consensus        90 ~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           90 LFFK--NSQKIDRLDGA-HAPELTKKVQRHASS  119 (153)
T ss_dssp             EEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred             EEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9998  69999999995 778888888877764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.61  E-value=3.3e-07  Score=75.26  Aligned_cols=99  Identities=16%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|.+++.   +.++ ++|+|+++||..|+.+...+   ..+...+..++.++.++.+.  ...++..|++..+|+++|
T Consensus        40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDE--HPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCC--CHHHHHHCCCCccCEEEE
Confidence            445555443   3455 99999999999999997543   34555555679999888875  356889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  +|+.+.++.|..+.+.|...|...++
T Consensus       111 ~~--~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          111 FR--RGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             Ee--CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            84  79999999999999999888887764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.61  E-value=5.1e-08  Score=78.95  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCc--------------chhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHH
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEF--------------SSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKV  129 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~--------------~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~  129 (342)
                      ..+|++++   .+.+|+++|+|+++||.              .|+.+... |  +++.+-+..++.+..++++..  ..+
T Consensus        10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~-~--~~l~~~~~~~~~~~~vd~d~~--~~l   81 (123)
T 1oaz_A           10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQN--PGT   81 (123)
T ss_dssp             STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHH-H--TTC-------CEEEEEETTSC--TTT
T ss_pred             hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHH-H--HHHHHHhcCCeEEEEEECCCC--HHH
Confidence            35565544   46799999999999999              77776542 2  123333445688888888753  357


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +..|++.++|+++++ + +|+.+.++.|..++++|.+.|...+
T Consensus        82 ~~~~~v~~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           82 APKYGIRGIPTLLLF-K-NGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGGTCCBSSEEEEE-E-SSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHcCCCccCEEEEE-E-CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            889999999999999 3 7999999999999999887776543

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.60  E-value=2.9e-07  Score=72.50  Aligned_cols=95  Identities=7%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+| +++    .++|+++|+|+++||..|+.+..      .+.++...  ++.+..++.+  +...++..|++..+|++
T Consensus        10 ~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~   76 (110)
T 2l6c_A           10 EAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSE--ARPELMKELGFERVPTL   76 (110)
T ss_dssp             GCSH-HHH----TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCSSCEE
T ss_pred             HHHH-HHH----HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcccCEE
Confidence            4556 444    46799999999999999999853      33444433  4667766664  45668899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++.  +|+.+.++.|..++++|...|..+..
T Consensus        77 ~~~~--~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           77 VFIR--DGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             EEEE--SSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             EEEE--CCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            9993  79999999999999998877766654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.60  E-value=2e-07  Score=75.10  Aligned_cols=89  Identities=10%  Similarity=0.069  Sum_probs=69.0

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCCh--------------------hHHHHHHhC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTS--------------------EGKKVCTYY  133 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~--------------------eg~~~~~~y  133 (342)
                      -.+|+++|+|+++||..|..+..      .+.++.+.  ++.++.++.++.                    ....+++.|
T Consensus        22 ~~~k~~lv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   95 (136)
T 1lu4_A           22 LQGKPAVLWFWTPWCPFCNAEAP------SLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY   95 (136)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred             hCCCEEEEEEECCcChhHHHHHH------HHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence            46899999999999999999753      33333332  677777777652                    134577889


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEe---CCCChHHHHHHHHhhh
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFM  172 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~---G~~~~~~~l~~L~~~l  172 (342)
                      ++..+|+++|||+ +|+++ ++.   |..+++++.+.|...+
T Consensus        96 ~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           96 NVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            9999999999997 78988 899   9999999988877654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.58  E-value=5.6e-07  Score=71.99  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=73.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|.+.+..  ..+|+++|+|+++||..|+.+...      +.++.++  ++.+..++.+. +...++..|++.++|+
T Consensus        24 ~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt   94 (124)
T 1faa_A           24 NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPT   94 (124)
T ss_dssp             CTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSE
T ss_pred             cchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeE
Confidence            45677777653  478999999999999999999644      3333332  47788877753 3456889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ++++.  +|+.+.++.|.. ++++.+.|..+
T Consensus        95 ~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           95 FKILK--ENSVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             EEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred             EEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence            76663  699999999975 77777766654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.58  E-value=1.9e-07  Score=79.25  Aligned_cols=100  Identities=9%  Similarity=0.069  Sum_probs=76.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++..  +..|+++|.|..+||.+|..+..-+   +++.+-..+..+|+.+|++.  ...++..|+|.+.|+++++
T Consensus        30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~Pvl---eelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELL---YKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             HHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEEE
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHH---HHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEEE
Confidence            456666632  5789999999999999999995221   23333334468999999975  4458999999999999988


Q ss_pred             eCCCCceE--E-------EEeCCCC-hHHHHHHHHhhhh
Q 019378          145 DPITGQKM--R-------SWCGMVQ-PESLLEDLVPFMD  173 (342)
Q Consensus       145 ~p~tG~~l--~-------~~~G~~~-~~~~l~~L~~~l~  173 (342)
                      -  +|+.+  .       ++.|..+ .++|++.|..++.
T Consensus       103 k--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A          103 Y--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             E--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             E--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence            6  58876  5       7889877 8999998888775

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.57  E-value=2.6e-07  Score=75.73  Aligned_cols=88  Identities=10%  Similarity=0.028  Sum_probs=70.1

Q ss_pred             eEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCC-------hhHHHHHHhCCCCCCcEEEEEeCCCCce
Q 019378           80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDT-------SEGKKVCTYYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s-------~eg~~~~~~y~v~~~P~l~ii~p~tG~~  151 (342)
                      +++|+|+++||.+|+.+.      +.+.++.+. .+.+..++++.       .+...++..|++.++|+++|+.  .|++
T Consensus        33 ~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~--~G~~  104 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYK--EGRI  104 (135)
T ss_dssp             SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEE--TTEE
T ss_pred             cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEc--CCEE
Confidence            999999999999999985      455666554 26667777744       4567789999999999999988  6999


Q ss_pred             EEEEeCCCChHHHHHHHHhhhhcC
Q 019378          152 MRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       152 l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +.++.|..+.+.+...+...++..
T Consensus       105 v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A          105 VDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             EEEEESCCCHHHHHHHHHHHC---
T ss_pred             EEEEeCCCCHHHHHHHHHHHhCCC
Confidence            999999999998888777777653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.55  E-value=3.3e-07  Score=71.88  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=71.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|.+++..  ..+|++||+|+++||..|+.+...+   ..+.+-.. ++.+..++.+. +...++..|++.++|++++
T Consensus        12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l---~~~~~~~~-~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~~~   84 (111)
T 2pu9_C           12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKY---EKLAEEYL-DVIFLKLDCNQ-ENKTLAKELGIRVVPTFKI   84 (111)
T ss_dssp             TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEECSS-TTHHHHHHHCCSBSSEEEE
T ss_pred             hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHH---HHHHHHCC-CeEEEEEecCc-chHHHHHHcCCCeeeEEEE
Confidence            4567776642  2589999999999999999996432   22222222 47888888763 3457889999999999554


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                       .+ +|+.+.++.|. ++++|...|..++
T Consensus        85 -~~-~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           85 -LK-ENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             -ES-SSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             -Ee-CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence             43 79999999997 4787777766554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.54  E-value=2.2e-08  Score=80.70  Aligned_cols=101  Identities=15%  Similarity=0.274  Sum_probs=80.1

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|++++..|+..+|+++|+|+++||..|+.+..      .+.++.+.  ++.++.++.+.  ...+++.|++..+|+
T Consensus        21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt   92 (130)
T 1wmj_A           21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAP------VFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPT   92 (130)
T ss_dssp             SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHH------HHHHHHHHCTTBCCEECCTTT--SGGGHHHHTCCSSCC
T ss_pred             CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHH------HHHHHHHHCCCCEEEEEeccc--hHHHHHHcCCCccce
Confidence            357799999999999999999999999999999864      33444433  57777766654  345788999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++|+  .+|+.+.++.| .+++++...|...+..
T Consensus        93 ~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           93 FLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             CCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             EEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            8877  37888888889 5788888888777764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.54  E-value=4e-07  Score=75.62  Aligned_cols=91  Identities=7%  Similarity=0.112  Sum_probs=71.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEE---
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMR---  153 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~---  153 (342)
                      .+|+++|+|+.+||.+|+.+...+   +++.+-...++.+..+|++..  ..++..|++.++|+++++.  +|+.+.   
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~i~~~Pt~~~~~--~G~~v~~~~   94 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF--RNKHIMIDL   94 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE--TTEEEEEEC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccC--HHHHHHcCCCCCCEEEEEE--CCcEEEEec
Confidence            589999999999999999997543   344444556799999988753  3478899999999999996  588775   


Q ss_pred             ------EEeCCCC-hHHHHHHHHhhhhc
Q 019378          154 ------SWCGMVQ-PESLLEDLVPFMDG  174 (342)
Q Consensus       154 ------~~~G~~~-~~~~l~~L~~~l~~  174 (342)
                            ++.|.++ .++|+..|..++..
T Consensus        95 g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           95 GTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             C------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence                  4566664 88898888887764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.54  E-value=8.6e-07  Score=73.98  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh--hHHHHHHh-----------------C--
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS--EGKKVCTY-----------------Y--  133 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~--eg~~~~~~-----------------y--  133 (342)
                      -.+|++||+|+++||..|..+...+   ..+.+-+. .++.++.++.+..  ....+...                 |  
T Consensus        32 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3or5_A           32 LKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNG  108 (165)
T ss_dssp             GTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHT
T ss_pred             cCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhh
Confidence            3689999999999999999986443   22333333 3588888877653  22333322                 2  


Q ss_pred             ----CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          134 ----KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       134 ----~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                          ++..+|+++|||+ +|+++.++.|..+++++...|...+...
T Consensus       109 ~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A          109 YIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             TSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             hhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence                7899999999997 7999999999999999999999998754

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.53  E-value=1.5e-07  Score=74.22  Aligned_cols=101  Identities=12%  Similarity=0.191  Sum_probs=74.9

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSI  138 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~  138 (342)
                      +-..+|++++    +.+|++||+|+++||..|+.+...+   ..+.+.+.   .++++..+|.+..  ..++..|++.++
T Consensus        12 l~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~   82 (120)
T 1mek_A           12 LRKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEE--SDLAQQYGVRGY   82 (120)
T ss_dssp             CCTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTC--CSSHHHHTCCSS
T ss_pred             echhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCC--HHHHHHCCCCcc
Confidence            3456777665    4689999999999999999986432   12333333   3577887777543  357788999999


Q ss_pred             cEEEEEeCCCCceE--EEEeCCCChHHHHHHHHhhhh
Q 019378          139 PVVLVVDPITGQKM--RSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       139 P~l~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |+++++.  .|+.+  ..+.|..+.+.|...|...+.
T Consensus        83 Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~~~~  117 (120)
T 1mek_A           83 PTIKFFR--NGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             SEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             cEEEEEe--CCCcCCcccccCccCHHHHHHHHHhccC
Confidence            9999995  58776  788999999998877766543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.52  E-value=3.3e-07  Score=78.54  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=76.2

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hh--------------------HHHHHH
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE--------------------GKKVCT  131 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~e--------------------g~~~~~  131 (342)
                      .+.-.+|++||+|..+||..|....      +.+.++.+.++.++.+++++ .+                    ...++.
T Consensus        53 l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (176)
T 3kh7_A           53 EADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGL  126 (176)
T ss_dssp             GGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHH
T ss_pred             HHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHH
Confidence            3445689999999999999999874      56777777778888777532 21                    124567


Q ss_pred             hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .|++..+|+++|||+ +|+++.++.|..+.+.+.+.|...++.
T Consensus       127 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  168 (176)
T 3kh7_A          127 DLGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQ  168 (176)
T ss_dssp             HHTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred             HcCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            889999999999997 799999999999999999888888764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.52  E-value=1.4e-07  Score=78.10  Aligned_cols=94  Identities=18%  Similarity=0.250  Sum_probs=72.1

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh---------------------hHHHHH
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS---------------------EGKKVC  130 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~---------------------eg~~~~  130 (342)
                      .+.-.+|++||+|+++||..|..+.      +.+.++.++ ++.++.++.++.                     ....++
T Consensus        37 l~~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (156)
T 1kng_A           37 PAAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS  110 (156)
T ss_dssp             GGGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred             hHHhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence            3344589999999999999999875      345555543 466776665432                     123567


Q ss_pred             HhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          131 TYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       131 ~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.|++..+|+++||++ +|+++.++.|..+.+.+...|...++
T Consensus       111 ~~~~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A          111 IEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME  152 (156)
T ss_dssp             HHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             HhcCcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence            7899999999999997 79999999999999998888877765

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.51  E-value=1.3e-06  Score=72.49  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=83.3

Q ss_pred             HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCC--cchhhhhhcccCCHHHHHHHhccEEEEEeecCChh
Q 019378           48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKE--FSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE  125 (342)
Q Consensus        48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~--~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e  125 (342)
                      .++|....|-+  .+-..+|++.+.   +.++++||+|+.+||  .+|+.+.--+   +++.+-....+.++++|++  +
T Consensus         8 ~~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvl---eela~e~~~~v~~~KVdvD--e   77 (137)
T 2qsi_A            8 ARAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVL---PELINAFPGRLVAAEVAAE--A   77 (137)
T ss_dssp             ---------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHH---HHHHHTSTTTEEEEEECGG--G
T ss_pred             HHHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHH---HHHHHHccCCcEEEEEECC--C
Confidence            34455555544  356788988773   445699999999999  9999995311   2233333346889987765  5


Q ss_pred             HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ...++..|+|.++|+++++.  +|+.+.++.|..+.+++...|...+..
T Consensus        78 ~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~~  124 (137)
T 2qsi_A           78 ERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLAE  124 (137)
T ss_dssp             HHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            67899999999999999996  799999999999999999988888753

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.50  E-value=2.8e-07  Score=77.72  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=72.3

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh---------------------hHHHHHHhCC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS---------------------EGKKVCTYYK  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~---------------------eg~~~~~~y~  134 (342)
                      ..+|++||+|+++||..|..+.      +.+.++.+.++.++.++.+..                     ....++..|+
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  122 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG  122 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred             cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence            3689999999999999999875      446666666666666664321                     2235677899


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +..+|+++||++ +|+++.++.|..+++.+...|...++.
T Consensus       123 v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          123 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             CCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             ccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            999999999997 799999999999999988877777653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.50  E-value=1e-06  Score=72.74  Aligned_cols=96  Identities=16%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCCh--hH-------------------HHHHHhC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTS--EG-------------------KKVCTYY  133 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~--eg-------------------~~~~~~y  133 (342)
                      -.+|++||+|+++||..|..+...+   ..+.+-+.+ ++.++.++.+..  +.                   ..++..|
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  102 (154)
T 3kcm_A           26 LKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLY  102 (154)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHH
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHh
Confidence            3689999999999999999986543   233333333 677777777763  22                   2377889


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhhcC
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMDGG  175 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~~~  175 (342)
                      ++..+|+++||++ +|+++.++.|..  +.+++...|.......
T Consensus       103 ~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A          103 GTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             TCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred             CCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence            9999999999997 799999999975  6678888887777654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.50  E-value=1.6e-06  Score=71.38  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-H-------------------HHHHh
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-K-------------------KVCTY  132 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-~-------------------~~~~~  132 (342)
                      +.-.+|++||+|.++||..|..+...+   ..+.+-+. .++.++.++.+.... .                   .++..
T Consensus        24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  100 (152)
T 3gl3_A           24 SDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL  100 (152)
T ss_dssp             GGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred             HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence            334689999999999999999886542   22333333 347777777764321 1                   56778


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCC--hHHHHHHHHhhhhcC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMDGG  175 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~--~~~~l~~L~~~l~~~  175 (342)
                      |++..+|+++|||+ .|+++.++.|..+  .+++.+.|...+...
T Consensus       101 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          101 YGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             TTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             cCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence            99999999999997 7999999999654  468877777776654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.49  E-value=5.8e-07  Score=73.41  Aligned_cols=90  Identities=18%  Similarity=0.309  Sum_probs=68.5

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hc-cEEEEEeecCChh-----------------------HHHHHH
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-ST-NFIFWQVYDDTSE-----------------------GKKVCT  131 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~-~FV~w~~~~~s~e-----------------------g~~~~~  131 (342)
                      .+|++||+|+++||..|..+...+   ..+.+-+ .+ ++.++.++.+...                       ...++.
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK  108 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence            689999999999999999986432   2233333 32 4888888887654                       457889


Q ss_pred             hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .|++..+|+++|||+ +|+++.+..   +.+.+...|...+.
T Consensus       109 ~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          109 QYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             HTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             hcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence            999999999999997 788876654   78888777776654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.47  E-value=5.4e-07  Score=73.76  Aligned_cols=98  Identities=7%  Similarity=0.114  Sum_probs=73.0

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..|++++..  ..+|++||+|+++||..|+.+..      .+.++.+. +++++.++.+.  ...++..|++..+|++++
T Consensus        29 ~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~   98 (133)
T 3cxg_A           29 GSLNQVFSS--TQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFEF   98 (133)
T ss_dssp             THHHHHHTC---CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             hHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEEE
Confidence            566666643  34799999999999999999843      34444433 46777777754  456889999999999999


Q ss_pred             EeCCCCc--eEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQ--KMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~--~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +...+|+  ++.++.|. ++++|...|...+.
T Consensus        99 ~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           99 YFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            8322466  88899998 88888887777654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.47  E-value=2.7e-07  Score=75.79  Aligned_cols=93  Identities=17%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|.+++..+ ..+|++||+|+.+||..|+.+..      .+.++.++  ++.+..++++...     ..|++..+|+
T Consensus        16 ~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p------~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt   83 (135)
T 2dbc_A           16 SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQ------HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPT   83 (135)
T ss_dssp             CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHH------HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSE
T ss_pred             CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCE
Confidence            345566666544 34689999999999999999964      34444443  5788888887642     6899999999


Q ss_pred             EEEEeCCCCceEEEEeCCC-------ChHHHHHHHH
Q 019378          141 VLVVDPITGQKMRSWCGMV-------QPESLLEDLV  169 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~-------~~~~~l~~L~  169 (342)
                      ++++.  +|+++.++.|..       +.++|...|.
T Consensus        84 ~~~~~--~G~~v~~~~G~~~~~~~~~~~~~l~~~l~  117 (135)
T 2dbc_A           84 IFVYK--NGQIEGKFIGIIECGGINLKLEELEWKLS  117 (135)
T ss_dssp             EEEES--SSSCSEEEESTTTTTCTTCCHHHHHHHHH
T ss_pred             EEEEE--CCEEEEEEEeEEeeCCCcCCHHHHHHHHH
Confidence            99996  799999999975       4555544443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.86  E-value=1.8e-08  Score=77.65  Aligned_cols=92  Identities=21%  Similarity=0.224  Sum_probs=70.5

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      .+...+|+++|+|+++||..|+.+...+   ..+.+.+..++.+..++.+.  ...++..|++..+|+++++ + +|+.+
T Consensus        14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~-~-~g~~~   86 (106)
T 2yj7_A           14 EVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVDE--NPNTAAQYGIRSIPTLLLF-K-NGQVV   86 (106)
Confidence            3356789999999999999999996543   34444455567777766653  4568899999999999999 3 78888


Q ss_pred             EEEeCCCChHHHHHHHHhh
Q 019378          153 RSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       153 ~~~~G~~~~~~~l~~L~~~  171 (342)
                      .++.|..+.+.+.+.|...
T Consensus        87 ~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           87 DRLVGAQPKEALKERIDKH  105 (106)
Confidence            8899988888877666543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.47  E-value=2.4e-07  Score=75.79  Aligned_cols=93  Identities=11%  Similarity=0.103  Sum_probs=70.2

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--HH---------------------HHHh
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KK---------------------VCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--~~---------------------~~~~  132 (342)
                      .+|++||+|+++||..|..+...+-   .+.+-+. .++.++.++.+....  ..                     ++..
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            6899999999999999998754221   1333333 348888888774322  11                     7788


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |++..+|+++|||+ +|+++.++.|..+.+.+++.|...+.
T Consensus       107 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A          107 YDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             HCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             cCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence            99999999999997 79999999998888888888876654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.46  E-value=3.5e-06  Score=69.89  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhh-hhhcccCCHHHHHHHh----ccEEEEEeecC-------ChhH----------
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHM-LNRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG----------  126 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~-f~rdvl~~~~V~~~i~----~~FV~w~~~~~-------s~eg----------  126 (342)
                      +.+..+.-.+|++||+|..+||..|.. +.      +.+.++.+    .++.++.++.+       +.+.          
T Consensus        21 ~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~   94 (160)
T 3lor_A           21 EGLSNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGI   94 (160)
T ss_dssp             CCCCHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTC
T ss_pred             CccCHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCC
Confidence            344455557999999999999999987 33      23333332    35888877752       2211          


Q ss_pred             ---------H------HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          127 ---------K------KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       127 ---------~------~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                               .      .++..|++..+|+++|||+ +|+++.++.|..+++.+...|...+..
T Consensus        95 ~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           95 KFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             CCcEEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                     1      2778899999999999997 799999999999999999988888764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.45  E-value=3.5e-07  Score=72.68  Aligned_cols=97  Identities=10%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-----cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-----NFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-----~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      .+|++++   ...+|++||+|+++||..|+.+...+   ..+.+.+..     ++.+..+|.+..+   ++.  ++..+|
T Consensus        15 ~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~P   83 (121)
T 2djj_A           15 KNYNEIV---LDDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFP   83 (121)
T ss_dssp             TTTTTSS---SCTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSS
T ss_pred             cCHHHHh---hcCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCC
Confidence            4454443   24689999999999999999997643   356666655     7899999987654   444  999999


Q ss_pred             EEEEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378          140 VVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       140 ~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++++++ .|++ +.++.|..+.+.|...|...+.
T Consensus        84 t~~~~~~-~~~~~~~~~~G~~~~~~l~~~i~~~~~  117 (121)
T 2djj_A           84 TIKLYPA-GAKGQPVTYSGSRTVEDLIKFIAENGK  117 (121)
T ss_dssp             EEEEECS-SCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             eEEEEeC-cCCCCceEecCCCCHHHHHHHHHhccC
Confidence            9999986 4453 6778899999998887776554

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.45  E-value=8.2e-07  Score=74.03  Aligned_cols=110  Identities=9%  Similarity=-0.002  Sum_probs=85.0

Q ss_pred             HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHhc---c-EEEEEeec
Q 019378           48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIST---N-FIFWQVYD  121 (342)
Q Consensus        48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~~---~-FV~w~~~~  121 (342)
                      .++|... |-+  ..-..+|++.+    ...+++||+|..+|  |.+|+.+.      +-+-++..+   . +.++++|+
T Consensus        11 ~~rl~~~-g~~--~~t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~ia------Pvleela~e~~g~~v~~~KVdv   77 (140)
T 2qgv_A           11 WQRMLAR-GWT--PVSESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNP------VMIGELLHEFPDYTWQVAIADL   77 (140)
T ss_dssp             HHHHHHT-TCE--ECCHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHH------HHHHHHHTTCTTSCCEEEECCH
T ss_pred             HHHHHhc-CCc--cCCHHHHHHHH----hCCCCEEEEEeCCcccCCcHHHHH------hHHHHHHHHcCCCeEEEEEEEC
Confidence            4455554 432  34567788777    26789999999998  89999985      444444443   4 78887666


Q ss_pred             CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          122 DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       122 ~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +  +...++..|+|.++|+++++.  +|+.+.++.|..+.+++...|..++..
T Consensus        78 D--e~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~~  126 (140)
T 2qgv_A           78 E--QSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP  126 (140)
T ss_dssp             H--HHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             C--CCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhcC
Confidence            4  677899999999999999996  799999999999999999999888853

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.45  E-value=1.3e-06  Score=70.29  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=73.0

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-----hccEEEEEeecCChhHHHHHHhCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-----STNFIFWQVYDDTSEGKKVCTYYKLD  136 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-----~~~FV~w~~~~~s~eg~~~~~~y~v~  136 (342)
                      +-..+|++.+.   ..+|++||+|+++||..|+.+... |.  .+.+.+     ..++++..+|.+.  ...++..|++.
T Consensus        20 l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~-~~--~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~   91 (127)
T 3h79_A           20 LTDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRL-WD--DLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVS   91 (127)
T ss_dssp             CCTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHH-HH--HHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCC
T ss_pred             CChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHH-HH--HHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCc
Confidence            34567777664   458999999999999999999642 21  122211     2468899888875  45789999999


Q ss_pred             CCcEEEEEeCCCCce-EEEEeCCCChHHHHHHHHh
Q 019378          137 SIPVVLVVDPITGQK-MRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~  170 (342)
                      ++|+++++.+ .+.. ...+.|..+.+.|.+.|.+
T Consensus        92 ~~Pt~~~~~~-g~~~~~~~~~G~~~~~~l~~~i~~  125 (127)
T 3h79_A           92 GFPTMRYYTR-IDKQEPFEYSGQRYLSLVDSFVFQ  125 (127)
T ss_dssp             SSSEEEEECS-SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred             cCCEEEEEeC-CCCCCceEecCCccHHHHHHHHHh
Confidence            9999999985 2332 2567899999988776654

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.45  E-value=1.1e-06  Score=72.74  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=69.0

Q ss_pred             CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeec---CC----------------------hhHHHHHHh
Q 019378           79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYD---DT----------------------SEGKKVCTY  132 (342)
Q Consensus        79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~---~s----------------------~eg~~~~~~  132 (342)
                      |++||+|.++||..|..+...+      .++.++ ++.++.++.   ++                      .....++..
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l------~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  104 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGL------HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAAR  104 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHH------HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTT
T ss_pred             CeEEEEEEcccChhHHHHHHHH------HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHH
Confidence            9999999999999999986443      222222 455555555   22                      145677889


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      |++..+|+++|||+ +|+++.++.|..+++++...|......
T Consensus       105 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          105 FKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGAD  145 (154)
T ss_dssp             SSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred             hCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCc
Confidence            99999999999997 799999999999999998888777664

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.45  E-value=1.9e-06  Score=71.30  Aligned_cols=92  Identities=20%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh-----------------------HHHHHHh
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-----------------------GKKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e-----------------------g~~~~~~  132 (342)
                      .+|++||+|.++||..|..+...+   ..+.+-+. .++.++.++.+...                       ...++..
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  104 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES  104 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence            689999999999999999875432   22333333 35888888887532                       4668889


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      |++..+|+++|||+ +|+++.+.   ++++++.+.|...+...
T Consensus       105 ~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A          105 YCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             TTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred             hCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhc
Confidence            99999999999997 78988775   35667777777766643

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.45  E-value=2.4e-07  Score=70.66  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=58.6

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccC-CCcCCChhhcCCcC-ceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLD-YDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~-~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      +|+||+++|+.+...|..++||.+|..+|.... +.+...++|..+||++.  +. .+.++||+++||.+ ++|+|+
T Consensus         2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~-gi~~~~qrL~~~~p~k~--l~l~~~~~tL~~~gl~~g~~l~v~   75 (86)
T 2kzr_A            2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAIT-GIAPGSQRILVGYPPEC--LDLSDRDITLGDLPIQSGDMLIVE   75 (86)
T ss_dssp             CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHT-CCCTTTCCCEESSCCCC--CCCCCSSCBTTTSSCCTTCEEECC
T ss_pred             EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHh-CCCccceEEEeCCCCcc--cccCCCCCCHHHcCCCCCCEEEEE
Confidence            589999999877655999999999999999863 66677899999999875  42 24789999999985 556553

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.45  E-value=8.4e-07  Score=73.20  Aligned_cols=97  Identities=13%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--Ch-------------------hHHHHHHh
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--TS-------------------EGKKVCTY  132 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--s~-------------------eg~~~~~~  132 (342)
                      .-.+|++||+|.++||..|..+...+   ..+.+-+. .++.++.++.+  +.                   ....++..
T Consensus        25 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  101 (153)
T 2l5o_A           25 DLQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQA  101 (153)
T ss_dssp             HHTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHH
T ss_pred             HhCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHH
Confidence            34689999999999999999875432   12233233 35777666532  21                   12357788


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      |++..+|+++|||+ +|+++..+.|..+.+.+...|...+...
T Consensus       102 ~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  143 (153)
T 2l5o_A          102 FGTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNS  143 (153)
T ss_dssp             HTCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred             cCCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence            99999999999997 7999999999999999999999988854

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.44  E-value=1.6e-06  Score=74.18  Aligned_cols=94  Identities=12%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccE------EEEEeecCC--hh-HHHHHHh-------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNF------IFWQVYDDT--SE-GKKVCTY-------------  132 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~F------V~w~~~~~s--~e-g~~~~~~-------------  132 (342)
                      -.+|++||+|+.+||..|..+...+   ..+.+-+. .++      .++.++.+.  .+ ..++++.             
T Consensus        57 ~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~  133 (183)
T 3lwa_A           57 FENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPF  133 (183)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTC
T ss_pred             hCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcc
Confidence            4689999999999999999875432   22333333 336      888888766  22 3344433             


Q ss_pred             --------CCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          133 --------YKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       133 --------y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                              |++..+|+++||++ .|+++.++.|..+++++...|...+.
T Consensus       134 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          134 MTAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVD  181 (183)
T ss_dssp             GGGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             hHHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                    35788999999997 79999999999999999988887765

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.44  E-value=1.1e-06  Score=72.95  Aligned_cols=94  Identities=13%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             HHHcCCeEEEEEecCCCcchhhh-hhcccCCHHHHHHHh----ccEEEEEeecC-------ChhH---------------
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHML-NRDTWANEAVSQTIS----TNFIFWQVYDD-------TSEG---------------  126 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f-~rdvl~~~~V~~~i~----~~FV~w~~~~~-------s~eg---------------  126 (342)
                      +.-.+|++||+|..+||..|... .      +.+.++.+    .++.++.++.+       +.+.               
T Consensus        24 ~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (158)
T 3eyt_A           24 ADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVG   97 (158)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEE
T ss_pred             HHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEE
Confidence            33458999999999999999983 3      23334333    36777777753       1111               


Q ss_pred             -----H----HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          127 -----K----KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       127 -----~----~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                           .    .++..|++..+|+++|||+ .|+++.++.|..+.+++...|...+..
T Consensus        98 ~d~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A           98 VDQPGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             EECCCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             EcCccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence                 1    4788999999999999997 799999999999999999988888764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=5.5e-07  Score=73.71  Aligned_cols=93  Identities=11%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCC-----
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD-----  136 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~-----  136 (342)
                      -..+|++++  +...++++||+|+++||..|+.+...+   .++.+-... ++.+..+|++.  ...++..|++.     
T Consensus        13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A           13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGR--YTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTT--CHHHHHHTTCCCCSSS
T ss_pred             cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCcc--CHHHHHHccCcccCCc
Confidence            356788887  455677999999999999999997543   344444443 78898877764  45688999998     


Q ss_pred             -CCcEEEEEeCCCCceEEEEeCCCChHHH
Q 019378          137 -SIPVVLVVDPITGQKMRSWCGMVQPESL  164 (342)
Q Consensus       137 -~~P~l~ii~p~tG~~l~~~~G~~~~~~~  164 (342)
                       .+|+++++.  .|+.+.++.|..+.+.+
T Consensus        86 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l  112 (137)
T 2dj0_A           86 KQLPTLILFQ--GGKEAMRRPQIDKKGRA  112 (137)
T ss_dssp             SCSSEEEEES--SSSEEEEESCBCSSSCB
T ss_pred             CCCCEEEEEE--CCEEEEEecCcCchHHH
Confidence             999999994  69999999997765544

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.39  E-value=1e-06  Score=73.47  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=67.6

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcc-------------------------cCCHHHHHHHhc-cEEEEEeecCChhH
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDT-------------------------WANEAVSQTIST-NFIFWQVYDDTSEG  126 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdv-------------------------l~~~~V~~~i~~-~FV~w~~~~~s~eg  126 (342)
                      .+...+|++||+|+++||..|..+...+                         -..+.+.++++. ++-+|.++.+  ..
T Consensus        33 ~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~  110 (164)
T 2h30_A           33 VYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTD--NG  110 (164)
T ss_dssp             GGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEEC--TT
T ss_pred             HHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEc--Cc
Confidence            3445789999999999999999875321                         001123333332 1211222222  12


Q ss_pred             HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ..++..|++..+|+++|||+ +|+++.++.|..+.++|...|...+.
T Consensus       111 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          111 GTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             CHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            45788999999999999997 79999999999999998887777665

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.38  E-value=2.1e-06  Score=77.35  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH
Q 019378           53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK  127 (342)
Q Consensus        53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~  127 (342)
                      .+|.+..++  +-..+|++.+   ...+|+++|+|+++||..|+.|...+   ..+.+-+..   ++.+..+|++..+..
T Consensus         6 ~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~   79 (244)
T 3q6o_A            6 ALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNS   79 (244)
T ss_dssp             CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTH
T ss_pred             CCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhH
Confidence            456554433  3456777665   35679999999999999999996432   344444554   799999999877888


Q ss_pred             HHHHhCCCCCCcEEEEEeCCC----CceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          128 KVCTYYKLDSIPVVLVVDPIT----GQKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       128 ~~~~~y~v~~~P~l~ii~p~t----G~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      .++..|++..+|++.++++..    |..+ .+.| .+++.|...|...+..+.
T Consensus        80 ~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           80 AVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             HHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             HHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence            999999999999999999621    2223 5556 689999999999888653

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.37  E-value=4e-06  Score=71.79  Aligned_cols=95  Identities=23%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCCh---hHHHHHHhCCCC---------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTS---EGKKVCTYYKLD---------------  136 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~---eg~~~~~~y~v~---------------  136 (342)
                      -.+|++||+|+.+||..|......+   .++.+-+. .++.++.++.+..   ....++..|++.               
T Consensus        58 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  134 (186)
T 1jfu_A           58 FRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD  134 (186)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred             cCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence            3689999999999999999876443   23333333 5777777777643   345677777764               


Q ss_pred             --------CCcEEEEEeCCCCceEEEEeCCCC--hHHHHHHHHhhhhc
Q 019378          137 --------SIPVVLVVDPITGQKMRSWCGMVQ--PESLLEDLVPFMDG  174 (342)
Q Consensus       137 --------~~P~l~ii~p~tG~~l~~~~G~~~--~~~~l~~L~~~l~~  174 (342)
                              .+|+++|||+ +|+++.++.|..+  .+++...|...+..
T Consensus       135 ~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          135 LKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             HHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             hccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                    8999999997 7999999999764  78888888877753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.37  E-value=3.9e-06  Score=74.15  Aligned_cols=93  Identities=12%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             HHHHcCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCC
Q 019378           73 AASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPI  147 (342)
Q Consensus        73 ~Ak~~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~  147 (342)
                      ..+..++++ +|+|+++||..|+.+...+   ..+.....    .++.+..+|.+.  ...++..|++.++|+++|+.  
T Consensus       128 ~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--  200 (226)
T 1a8l_A          128 AIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMAVPKIVIQV--  200 (226)
T ss_dssp             HHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCSSCEEEEEE--
T ss_pred             HHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEccc--CHHHHHhCCCcccCeEEEEe--
Confidence            344555666 9999999999999996433   34444444    478888887763  45688999999999988875  


Q ss_pred             CCceEEEEeCCCChHHHHHHHHhhh
Q 019378          148 TGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       148 tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +|+.+.++.|..+.+.|...|...+
T Consensus       201 ~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          201 NGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCceeEEEcCCCCHHHHHHHHHHhh
Confidence            6888889999999999988887654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.36  E-value=1.7e-06  Score=80.81  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++.   ..++++||+|+++||..|+.+...+   ..+.+.+...+.+..++++..+...++..|++..+|++++
T Consensus        24 ~~~f~~~i~---~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~   97 (298)
T 3ed3_A           24 PKSFDKAIH---NTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV   97 (298)
T ss_dssp             HHHHHHHHT---SSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence            445666663   5689999999999999999997543   4555566666778888888777788999999999999999


Q ss_pred             EeCCCCc-----------------eEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQ-----------------KMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~-----------------~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.+  |+                 ....+.|..+.+.++..|...+.
T Consensus        98 ~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~  142 (298)
T 3ed3_A           98 FRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR  142 (298)
T ss_dssp             EEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred             EEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence            985  44                 35677899999999887766654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.35  E-value=3.8e-06  Score=69.98  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-----ccEEEEEeecCC----h----------------------
Q 019378           77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----S----------------------  124 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-----~~FV~w~~~~~s----~----------------------  124 (342)
                      .+||+||+|..+||.+ |......+   .++.+-+.     .++.++.++++.    +                      
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d   98 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE   98 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence            5899999999999998 98764321   12333333     267777766653    1                      


Q ss_pred             hHHHHHHhCCCCCCc---------------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          125 EGKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       125 eg~~~~~~y~v~~~P---------------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ....+++.|++...|               +++|||+ .|+++.++.|..+++++.+.|...+..+
T Consensus        99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  163 (164)
T 2ggt_A           99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  163 (164)
T ss_dssp             HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            123477889998899               8999997 7999999999999999999998887653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2.7e-06  Score=68.20  Aligned_cols=98  Identities=7%  Similarity=0.078  Sum_probs=73.7

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      -..+|++++.     + .+||+|+++||..|+.+...+   ..+.+.+.+ ++.+..+|++.  ...++..|++..+|++
T Consensus        13 ~~~~f~~~~~-----~-~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A           13 TDENWRELLE-----G-DWMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTE--QPGLSGRFIINALPTI   81 (126)
T ss_dssp             CTTTHHHHTS-----S-EEEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTT--CHHHHHHTTCCSSSEE
T ss_pred             cHHHHHHHhC-----C-CEEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcC--CHHHHHHcCCcccCEE
Confidence            3456766542     2 389999999999999997543   234444443 78888888764  3468899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +++.  +|+ +.++.|..+.+.|...|...+..
T Consensus        82 ~~~~--~G~-~~~~~G~~~~~~l~~~l~~~~~~  111 (126)
T 1x5e_A           82 YHCK--DGE-FRRYQGPRTKKDFINFISDKEWK  111 (126)
T ss_dssp             EEEE--TTE-EEECCSCCCHHHHHHHHHTCGGG
T ss_pred             EEEe--CCe-EEEeecCCCHHHHHHHHHHHhhc
Confidence            9993  688 57888999999998888777653

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.35  E-value=2.7e-06  Score=69.31  Aligned_cols=91  Identities=10%  Similarity=0.162  Sum_probs=67.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChh-H-HHH--------------------HHhC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSE-G-KKV--------------------CTYY  133 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~e-g-~~~--------------------~~~y  133 (342)
                      .+|++||+|.++||..|..+...+-..+.+.+.+. .++.++.++.+... . ..+                    +..|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            68999999999999999998666555566666554 46888888876432 2 222                    3389


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      ++..+|+++|||+ .|+++.   +.++.+++.+.|...
T Consensus       106 ~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHHHH
Confidence            9999999999997 688765   567788776655543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.34  E-value=2.2e-06  Score=71.51  Aligned_cols=91  Identities=14%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC-----------------hhHHHHHHhCCCCCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT-----------------SEGKKVCTYYKLDSI  138 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s-----------------~eg~~~~~~y~v~~~  138 (342)
                      .+|++||+|+++||..|..+...+   ..+.+-+. .++.++.++.+.                 .....++..|++..+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  116 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL  116 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence            689999999999999999875432   22222232 578888888875                 123468899999999


Q ss_pred             cEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhh
Q 019378          139 PVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF  171 (342)
Q Consensus       139 P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~  171 (342)
                      |+++|||+ +|+++.++.|..  +..++++.+..-
T Consensus       117 P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A          117 PDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLKSL  150 (158)
T ss_dssp             SEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred             ceEEEEcC-CCCEEEEEeCCCccchHHHHHHHHhh
Confidence            99999997 799999999975  566777665543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.33  E-value=3e-06  Score=70.55  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHH---------------------HHHHhCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYYK  134 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~---------------------~~~~~y~  134 (342)
                      .+|++||+|..+||..|......+   ..+.+-+. .++.++.++.+.....                     .++..|+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN  110 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence            579999999999999999865332   12222232 3588888888765431                     2778999


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +..+|+++|||+ .|+++.++.|..+.++.+..+.+-
T Consensus       111 v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~~~  146 (152)
T 2lrt_A          111 VTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLLEG  146 (152)
T ss_dssp             CCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHHGG
T ss_pred             cccCceEEEECC-CCeEEEecCCHHHHHHHHHHHHhc
Confidence            999999999997 799999999988888877665543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.30  E-value=4e-06  Score=74.53  Aligned_cols=100  Identities=8%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      -..+|++++    .++|++||+|+++||..|+.+...+   ..+.+.+...   +.+..+|.+.  ...+++.|++.++|
T Consensus        21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~P   91 (241)
T 3idv_A           21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATS--ASVLASRFDVSGYP   91 (241)
T ss_dssp             CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccC--CHHHHHhcCCCcCC
Confidence            345666655    5689999999999999999996432   3344444443   8888888764  45789999999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +++++.  .|+.+ ...|..+.+.+...+...+..
T Consensus        92 t~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~  123 (241)
T 3idv_A           92 TIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP  123 (241)
T ss_dssp             EEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred             EEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence            999997  47776 588999999999888887764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.28  E-value=1.7e-06  Score=69.96  Aligned_cols=93  Identities=11%  Similarity=0.110  Sum_probs=69.3

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE-E
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R  153 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l-~  153 (342)
                      .+|++||+|+++||..|+.+...+   ..+.+.+.  .++++..+|.+...  .++..|++..+|+++++++ .|.+. .
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~-g~~~~~~   97 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATAND--ITNDQYKVEGFPTIYFAPS-GDKKNPI   97 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTTSC--CCCSSCCCSSSSEEEEECT-TCTTSCE
T ss_pred             CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCcCH--HHHhhcCCCcCCEEEEEeC-CCcccce
Confidence            589999999999999999997542   34555554  46999988876532  4567899999999999985 33322 2


Q ss_pred             EEe-CCCChHHHHHHHHhhhhcC
Q 019378          154 SWC-GMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       154 ~~~-G~~~~~~~l~~L~~~l~~~  175 (342)
                      .+. |..+++.|...|...+...
T Consensus        98 ~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           98 KFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             ECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EecCCCcCHHHHHHHHHHhcccc
Confidence            455 5689999988888777643

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.28  E-value=5.9e-06  Score=69.19  Aligned_cols=88  Identities=10%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecC-------------------ChhH--------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD-------------------TSEG--------  126 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~-------------------s~eg--------  126 (342)
                      -.+|++||+|.++||..|..+.      +.+.++.+.  ++.++.++.+                   +.+.        
T Consensus        35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (165)
T 3ha9_A           35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY  108 (165)
T ss_dssp             CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred             hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence            3789999999999999999975      445555543  6777777776                   2211        


Q ss_pred             -----------HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCC-ChHHHHHHHHhhh
Q 019378          127 -----------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-QPESLLEDLVPFM  172 (342)
Q Consensus       127 -----------~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~-~~~~~l~~L~~~l  172 (342)
                                 ..++..|++..+|+++|||+ +|+++.  .|.. +.+.+...|...+
T Consensus       109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             SCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             CCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                       26778899999999999997 788887  7888 8888888777654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.27  E-value=6.3e-06  Score=82.93  Aligned_cols=118  Identities=10%  Similarity=0.064  Sum_probs=91.4

Q ss_pred             HhhCCCCcC--cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHH
Q 019378           53 SLYRPPFHL--MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGK  127 (342)
Q Consensus        53 ~~f~pp~~~--~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~  127 (342)
                      .+|.+..++  +-..+|++++.   +.+|++||+|+++||..|+.+...+   +.+.+-+..   .+.+..+|.+..+..
T Consensus         6 ~Ly~~~~~V~~Lt~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~   79 (519)
T 3t58_A            6 VLYSSSDPLTLLDADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNS   79 (519)
T ss_dssp             CSCCTTSSSEEECTTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGH
T ss_pred             ccCCCCCCcEECChHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccH
Confidence            456554443  33567776653   4579999999999999999997543   455555555   799999999887888


Q ss_pred             HHHHhCCCCCCcEEEEEeCC--CCceEEEEeCCCChHHHHHHHHhhhhcCC
Q 019378          128 KVCTYYKLDSIPVVLVVDPI--TGQKMRSWCGMVQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       128 ~~~~~y~v~~~P~l~ii~p~--tG~~l~~~~G~~~~~~~l~~L~~~l~~~~  176 (342)
                      .++..|+|.++|+++++++.  .|+.+....|..+++.+.+.|...+..+.
T Consensus        80 ~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           80 AVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             HHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            99999999999999999952  34555666777999999999999987653

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.24  E-value=3.1e-06  Score=69.18  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH----------------------HHHHHhC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG----------------------KKVCTYY  133 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg----------------------~~~~~~y  133 (342)
                      .+|++||+|+++||..|......+-.++.+.+.+. .++.++.++.+....                      ..++..|
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            47999999999999999998766555555655553 578888888776422                      1257789


Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeC
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      ++..+|+++|||+ .|.++.+..|
T Consensus       110 ~v~~~P~~~lid~-~G~i~~~~~~  132 (142)
T 3eur_A          110 DLRAIPTLYLLDK-NKTVLLKDAT  132 (142)
T ss_dssp             CCTTCSEEEEECT-TCBEEEEEEC
T ss_pred             CCCcCCeEEEECC-CCcEEecCCC
Confidence            9999999999997 7998877655

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.22  E-value=1.8e-05  Score=66.33  Aligned_cols=95  Identities=12%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-----ccEEEEEeecCC----hh---------------------
Q 019378           77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-----TNFIFWQVYDDT----SE---------------------  125 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-----~~FV~w~~~~~s----~e---------------------  125 (342)
                      .+||+||+|..+||.+ |......+   ..+.+-+.     .++.++.++++.    ++                     
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~  101 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK  101 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence            5899999999999998 98764321   12333332     367777777652    22                     


Q ss_pred             -HHHHHHhCCCCCCc---------------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          126 -GKKVCTYYKLDSIP---------------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       126 -g~~~~~~y~v~~~P---------------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                       ...+++.|++...|               +++|||+ .|.++.++.|..+++++...|...+...
T Consensus       102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  166 (171)
T 2rli_A          102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF  166 (171)
T ss_dssp             HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence             23577889998888               8999997 7999999999999999999998888643

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.22  E-value=3.5e-06  Score=62.26  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378           81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ  160 (342)
Q Consensus        81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~  160 (342)
                      .+|+|+++||..|+.+...+   +.+.+-...++.+..++++..  ..++..|++.++|++++    +|+.  ++.|..+
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~~~   72 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVD--REKAIEYGLMAVPAIAI----NGVV--RFVGAPS   72 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTC--GGGGGGTCSSCSSEEEE----TTTE--EEECSSC
T ss_pred             EEEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHhCCceeeCEEEE----CCEE--EEccCCC
Confidence            47899999999999996532   334444445777887777643  35788999999999998    5776  7889889


Q ss_pred             hHHHHHHHHhhh
Q 019378          161 PESLLEDLVPFM  172 (342)
Q Consensus       161 ~~~~l~~L~~~l  172 (342)
                      .++|.+.|...+
T Consensus        73 ~~~l~~~l~~~l   84 (85)
T 1nho_A           73 REELFEAINDEM   84 (85)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999988877654

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=8.6e-06  Score=67.15  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             cCCeEEEEEecCCCcc--hhhhhhcccCCHHHHHHH-h-ccEEEEEeecCChh-----------------------HHHH
Q 019378           77 QDKWLLVNLQSTKEFS--SHMLNRDTWANEAVSQTI-S-TNFIFWQVYDDTSE-----------------------GKKV  129 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~--~~~f~rdvl~~~~V~~~i-~-~~FV~w~~~~~s~e-----------------------g~~~  129 (342)
                      .+|++||+|..+||.+  |......+-   .+.+-+ . .++.++.++.+...                       ...+
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~---~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  108 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELR---EIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV  108 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHH---HHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHH---HHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence            6899999999999999  998753221   122222 2 34888888887653                       2367


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +..|++..+|+++|||+ .|+++.+..   +++++...|...+.
T Consensus       109 ~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          109 AKQYSIYKIPANILLSS-DGKILAKNL---RGEELKKKIENIVE  148 (150)
T ss_dssp             HHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHHH
T ss_pred             HHHcCCCccCeEEEECC-CCEEEEccC---CHHHHHHHHHHHHh
Confidence            88999999999999997 789887663   78888777777664

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.19  E-value=9.9e-06  Score=66.20  Aligned_cols=78  Identities=17%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHHH
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKVC  130 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~~  130 (342)
                      .-.+|++||+|+.+||..|..+...+   ..+.+-+.  .++.++.++++...                      ...++
T Consensus        25 ~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  101 (144)
T 1i5g_A           25 SLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLT  101 (144)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred             HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHH
Confidence            34689999999999999999886443   23444444  47888888877532                      45788


Q ss_pred             HhCCCCCCcEEEEEeCCCCceEEEE
Q 019378          131 TYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus       131 ~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      +.|++..+|+++||++.+|+++.+.
T Consensus       102 ~~~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          102 TGFDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             HHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHcCCCCCCEEEEEECCCCcEEecc
Confidence            9999999999999994478877543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.18  E-value=4.5e-06  Score=69.51  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=61.6

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHh--ccEE--EEEeecCChhHHHHHHhCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIS--TNFI--FWQVYDDTSEGKKVCTYYKL  135 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~--~~FV--~w~~~~~s~eg~~~~~~y~v  135 (342)
                      +-..+|++.+.    ..+.++|+|..+|  |.+|+.+.      +.+.++.+  .++.  ++.+|++  +...++..|+|
T Consensus        22 l~~~~f~~~i~----~~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V   89 (142)
T 2es7_A           22 VEASTVDDWIK----RVGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNV   89 (142)
T ss_dssp             CCCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTC
T ss_pred             cccccHHHHHH----hCCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECC--CCHHHHHhcCC
Confidence            44577888764    3445777888776  89999885      33344333  3566  7776664  45678999999


Q ss_pred             CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .++|+++++  ++|+.+.++.|..+.++|.+.|...+..
T Consensus        90 ~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           90 RRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             CSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred             CcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            999999999  3799999999999999998888888764

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.18  E-value=7.1e-06  Score=69.42  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=59.9

Q ss_pred             HHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhH----------------------HH
Q 019378           73 AASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEG----------------------KK  128 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg----------------------~~  128 (342)
                      .+.-.+|++||+|..+||..|..+...+   ..+.+-+.+  ++.++.++++....                      ..
T Consensus        43 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T 3s9f_A           43 MDSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEA  119 (165)
T ss_dssp             SGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred             HHHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHH
Confidence            3444689999999999999999986443   233333443  67777777766533                      67


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      +++.|++..+|+++||++.+|+++.+.
T Consensus       120 l~~~~~v~~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A          120 LTKKYSVESIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             HHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHcCCCCCCEEEEEeCCCCEEEecc
Confidence            889999999999999998448887553

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.17  E-value=1.7e-06  Score=69.59  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecC-------CCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC-----hhHHHH
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT-----SEGKKV  129 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~-------~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s-----~eg~~~  129 (342)
                      .+|.+++..+  .+|+++|+|+++       ||.+|..+..      .+.++.+   .++.+..++++.     .+...+
T Consensus        13 ~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p------~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A           13 EEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEP------VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             HHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHH------HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             HHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhH------HHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            3444544432  489999999999       9999999963      3444443   479999999853     223457


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      +..|++.++|++++++.  |..+....| .+++.+..
T Consensus        85 ~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~~l~~  118 (123)
T 1wou_A           85 RKNLKVTAVPTLLKYGT--PQKLVESEC-LQANLVEM  118 (123)
T ss_dssp             HHHHCCCSSSEEEETTS--SCEEEGGGG-GCHHHHHH
T ss_pred             HHHCCCCeeCEEEEEcC--CceEecccc-CCHHHHHH
Confidence            88899999999999985  443322222 34555443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.17  E-value=1e-05  Score=66.34  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHH
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKV  129 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~  129 (342)
                      +.-.+|++||+|+.+||..|..+...+   ..+.+-+.  .++.++.++++...                      ...+
T Consensus        24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  100 (146)
T 1o8x_A           24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL  100 (146)
T ss_dssp             GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred             HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence            334689999999999999999886443   23444444  47777777777532                      4578


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ++.|++..+|+++||++.+|+++.+.
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A          101 SKHFNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             HHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHhCCCCCCEEEEEECCCCeEEEec
Confidence            89999999999999994478877553

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.16  E-value=5e-06  Score=61.44  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             CeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378           79 KWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus        79 K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      .+.+|+|+++||..|+.+...+   .++.+-...++.+..+|.+..  ..++..|++.++|++++    +|+.  ++.|.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~----~G~~--~~~G~   71 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMEN--PQKAMEYGIMAVPTIVI----NGDV--EFIGA   71 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSS--CCTTTSTTTCCSSEEEE----TTEE--ECCSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCC--HHHHHHCCCcccCEEEE----CCEE--eeecC
Confidence            4679999999999999996432   233333344788888887653  25778899999999998    5776  78898


Q ss_pred             CChHHHHHHHHhh
Q 019378          159 VQPESLLEDLVPF  171 (342)
Q Consensus       159 ~~~~~~l~~L~~~  171 (342)
                      .+++++...|...
T Consensus        72 ~~~~~l~~~l~~~   84 (85)
T 1fo5_A           72 PTKEALVEAIKKR   84 (85)
T ss_dssp             SSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            8999988877654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.16  E-value=4.3e-06  Score=67.51  Aligned_cols=90  Identities=14%  Similarity=0.289  Sum_probs=66.0

Q ss_pred             hCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHh
Q 019378           55 YRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTY  132 (342)
Q Consensus        55 f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~  132 (342)
                      ||....+ -..+|.+++..+ ..+++++|+|+.+||.+|+.|.      +.+.++.++  +..|+.+|++..     +..
T Consensus         2 ~G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~   68 (118)
T 3evi_A            2 FGELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQH   68 (118)
T ss_dssp             CCSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STT
T ss_pred             CcceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHH
Confidence            4444443 455676666432 2245999999999999999996      444444443  467788888753     589


Q ss_pred             CCCCCCcEEEEEeCCCCceEEEEeCCC
Q 019378          133 YKLDSIPVVLVVDPITGQKMRSWCGMV  159 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~~~G~~  159 (342)
                      |++.++|+++++.  +|+.+.++.|..
T Consensus        69 ~~v~~~PT~~~fk--~G~~v~~~~G~~   93 (118)
T 3evi_A           69 YHDNCLPTIFVYK--NGQIEAKFIGII   93 (118)
T ss_dssp             CCGGGCSEEEEEE--TTEEEEEEESTT
T ss_pred             CCCCCCCEEEEEE--CCEEEEEEeChh
Confidence            9999999999997  699999999964

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.15  E-value=2.3e-06  Score=76.45  Aligned_cols=86  Identities=13%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -..+|.+++..+ ..+++++|+|+.+||..|..+..      .+..+...  ++.|..++++   ...++..|++..+|+
T Consensus       106 ~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PT  175 (217)
T 2trc_P          106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSE
T ss_pred             CHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCE
Confidence            345666665433 24599999999999999999963      34444443  5788888876   345788999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCC
Q 019378          141 VLVVDPITGQKMRSWCGMVQ  160 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~  160 (342)
                      ++|+.  +|+++.++.|..+
T Consensus       176 l~~~~--~G~~v~~~~G~~~  193 (217)
T 2trc_P          176 LLVYK--GGELISNFISVAE  193 (217)
T ss_dssp             EEEEE--TTEEEEEETTGGG
T ss_pred             EEEEE--CCEEEEEEeCCcc
Confidence            99996  7999999998655

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.14  E-value=1.2e-05  Score=65.58  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=58.7

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh----------------------HHHH
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE----------------------GKKV  129 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e----------------------g~~~  129 (342)
                      +.-.+|++||+|+++||..|..+...+   ..+.+-+.  .++.++.++++...                      ...+
T Consensus        24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (144)
T 1o73_A           24 GSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL  100 (144)
T ss_dssp             GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             HHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence            344689999999999999999886432   22333333  47777777777632                      4568


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ++.|++..+|+++||++.+|+++.+.
T Consensus       101 ~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          101 GKTFGVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHcCCCCCCEEEEEECCCCeEEecc
Confidence            89999999999999994478877554

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.12  E-value=1.2e-05  Score=77.05  Aligned_cols=97  Identities=12%  Similarity=0.077  Sum_probs=73.8

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC------hh-------------------HH
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT------SE-------------------GK  127 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s------~e-------------------g~  127 (342)
                      +.-.+|++||+|+.+||..|..+...+   .++.+-+. .++.++.++.+.      .+                   ..
T Consensus        78 sdl~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~  154 (352)
T 2hyx_A           78 KSLRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNY  154 (352)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTS
T ss_pred             HHhCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcH
Confidence            334689999999999999999875432   12333333 368888887642      11                   13


Q ss_pred             HHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .+++.|++..+|+++|||+ +|+++.++.|..+.+++...|...+..
T Consensus       155 ~l~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          155 ATWTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             HHHHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            5677899999999999997 799999999999999998888888764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.12  E-value=1.9e-05  Score=63.20  Aligned_cols=87  Identities=10%  Similarity=0.086  Sum_probs=65.6

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--HHHHHhCCCCC-CcEEEEEeCC
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--KKVCTYYKLDS-IPVVLVVDPI  147 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--~~~~~~y~v~~-~P~l~ii~p~  147 (342)
                      ....+++++++|++|++||..|.++.      +.+.++.+ .+.-++.+|++....  ..++..|+|.+ .|+++++.  
T Consensus        18 ~~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k--   89 (112)
T 3iv4_A           18 EQVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFV--   89 (112)
T ss_dssp             HHHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEE--
T ss_pred             HHHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEE--
Confidence            33444599999999999999999985      34444543 456677777765332  56899999995 99999996  


Q ss_pred             CCceEEE-EeCCCChHHHHH
Q 019378          148 TGQKMRS-WCGMVQPESLLE  166 (342)
Q Consensus       148 tG~~l~~-~~G~~~~~~~l~  166 (342)
                      +|+.++. -.|.++.+.+..
T Consensus        90 ~G~~v~~~SH~~I~~~~l~~  109 (112)
T 3iv4_A           90 NGEMVWNRDHGDINVSSLAQ  109 (112)
T ss_dssp             TTEEEEEEEGGGCSHHHHHH
T ss_pred             CCEEEEEeeccccCHHHHHH
Confidence            7999976 457899987654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.11  E-value=1.7e-05  Score=76.32  Aligned_cols=101  Identities=18%  Similarity=0.231  Sum_probs=78.8

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH------hccEEEEEeecCChhHHHHHHhCCCC
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI------STNFIFWQVYDDTSEGKKVCTYYKLD  136 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i------~~~FV~w~~~~~s~eg~~~~~~y~v~  136 (342)
                      -..+|++++    ..++++||+|+++||..|+.+... |  ..+.+.+      ..++++..+|.+..  ..++..|+|.
T Consensus        11 ~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~   81 (382)
T 2r2j_A           11 DTENIDEIL----NNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQH--SDIAQRYRIS   81 (382)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTC--HHHHHHTTCC
T ss_pred             CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCcc--HHHHHhcCCC
Confidence            346777765    357999999999999999999643 2  3455555      33588888887653  5689999999


Q ss_pred             CCcEEEEEeCCCCceEE-EEeCCCChHHHHHHHHhhhhc
Q 019378          137 SIPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~-~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +||++.++.  .|+.+. .+.|..+++.+++.|...+..
T Consensus        82 ~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           82 KYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             EESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             cCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence            999999885  688776 488999999999988877753

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.08  E-value=1.9e-05  Score=78.51  Aligned_cols=101  Identities=10%  Similarity=0.169  Sum_probs=81.3

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      +-..+|++++    +.++++||+|+++||..|+.+... |  ..+.+.+.. ++.+..+|.+..  ..+++.|++.+||+
T Consensus        19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt   89 (504)
T 2b5e_A           19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPS   89 (504)
T ss_dssp             CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSE
T ss_pred             CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCE
Confidence            3467788876    468999999999999999999654 2  455556665 589999887654  56999999999999


Q ss_pred             EEEEeCCCCce--EEEEeCCCChHHHHHHHHhhhh
Q 019378          141 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       141 l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.++.  .|+.  +....|..+.+.+...|...+.
T Consensus        90 ~~~~~--~g~~~~~~~~~G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           90 LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             EEEEE--TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             EEEEe--CCccccceeecCCCCHHHHHHHHHHhcC
Confidence            99997  4776  7888999999999888877664

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.06  E-value=4e-06  Score=76.39  Aligned_cols=99  Identities=13%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+|.+++..+ ..++++||+|+.+||..|..+..      .+..+...  ++.|+.++++.   ..++..|++..+|+++
T Consensus       121 ~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p------~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll  190 (245)
T 1a0r_P          121 EQFLETIEKE-QKITTIVVHIYEDGIKGCDALNS------SLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLL  190 (245)
T ss_dssp             HHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEE
T ss_pred             HHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEE
Confidence            4555555432 35899999999999999999964      33444432  47788877754   4477899999999999


Q ss_pred             EEeCCCCceEEEEeCCCCh---HHHHHHHHhhhhcC
Q 019378          143 VVDPITGQKMRSWCGMVQP---ESLLEDLVPFMDGG  175 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~---~~~l~~L~~~l~~~  175 (342)
                      |+.  .|+++.++.|..+.   +-.+..|..+|..+
T Consensus       191 ~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          191 VYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEE--CCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            886  69999999986431   22344566666655

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.05  E-value=3e-05  Score=68.75  Aligned_cols=99  Identities=10%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      -..+|++++    ..+++++|+|+++||..|+.+...+   ..+...+..   ++.+..+|.+.  ...++..|++.++|
T Consensus       136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~P  206 (241)
T 3idv_A          136 TKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYP  206 (241)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSS
T ss_pred             cHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCC--CHHHHHHcCCcccC
Confidence            356676665    4578999999999999999985332   223333333   27788777764  34689999999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++++.  .|+.+. ..|..+.+.|++.|...+.
T Consensus       207 t~~~~~--~g~~~~-~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          207 TLKIFR--KGRPYD-YNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             EEEEEE--TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred             EEEEEE--CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence            999997  477765 7899999999888776654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.04  E-value=2.6e-05  Score=65.28  Aligned_cols=93  Identities=12%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             cCCe-EEEEEe-cCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhH-------------------HHHHHhCC
Q 019378           77 QDKW-LLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG-------------------KKVCTYYK  134 (342)
Q Consensus        77 ~~K~-LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg-------------------~~~~~~y~  134 (342)
                      .+|+ ++|+|. ++||..|......+   .++.+-+ ..++.++.++.++.+.                   ..++..|+
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG  103 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC
Confidence            4676 999999 99999999875432   1222222 3468888888876542                   35677899


Q ss_pred             CCC----CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          135 LDS----IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       135 v~~----~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +..    +|+++|||+ +|+++..+.|.......++.+...++
T Consensus       104 v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l~  145 (161)
T 3drn_A          104 AKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKALK  145 (161)
T ss_dssp             CCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             CCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHHH
Confidence            988    999999997 79999999995554444444444443

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.04  E-value=4.2e-06  Score=66.06  Aligned_cols=86  Identities=12%  Similarity=0.070  Sum_probs=60.7

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCCCCCcEEEEEeC
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v~~~P~l~ii~p  146 (342)
                      +++..|+..+|..+|+|+++||..|+.+.. +|.     ++- +.|-...++.+..  +...+++.|+|.++|+++|   
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~~-----~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i---   72 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFG-----AAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII---   72 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HHG-----GGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HHH-----HHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence            456777788899999999999999999952 222     222 2222333443333  4567899999999999776   


Q ss_pred             CCCceEEEEeCCCChHHHHHHH
Q 019378          147 ITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       147 ~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                       +|+.   +.|..+.+.|...+
T Consensus        73 -~G~~---~~G~~~~~~l~~~~   90 (106)
T 3kp8_A           73 -NGRT---YTGVRSLEALAVAS   90 (106)
T ss_dssp             -TTEE---EESCCCHHHHHHHH
T ss_pred             -CCEE---ecCCCCHHHHHHHh
Confidence             5663   78999988876544

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.01  E-value=1.5e-05  Score=68.68  Aligned_cols=96  Identities=13%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             HcCC-eEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCC--------hh-------------------H
Q 019378           76 VQDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDT--------SE-------------------G  126 (342)
Q Consensus        76 ~~~K-~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s--------~e-------------------g  126 (342)
                      -.+| ++||+|.++||..|......+   ..+.+-+ ..++.++.++.+.        .+                   .
T Consensus        43 ~~gk~~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~  119 (196)
T 2ywi_A           43 VKSDAATVIMFICNHCPFVKHVQHEL---VRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDET  119 (196)
T ss_dssp             HCCSSEEEEEECCSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred             hCCCCeEEEEEeCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCc
Confidence            3577 599999999999998765321   1122222 2358888887742        21                   2


Q ss_pred             HHHHHhCCCCCCcEEEEEeCCCCceEEE---------EeCCCChHHHHHHHHhhhhcC
Q 019378          127 KKVCTYYKLDSIPVVLVVDPITGQKMRS---------WCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~---------~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ..++..|++..+|+++|||+ +|+++.+         ..|..+.+++...|...+...
T Consensus       120 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~  176 (196)
T 2ywi_A          120 QEVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR  176 (196)
T ss_dssp             CHHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred             hHHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence            34677899999999999997 7998877         357778999999998888754

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.00  E-value=1.1e-05  Score=79.80  Aligned_cols=102  Identities=14%  Similarity=0.205  Sum_probs=79.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++ .....++++||+|+++||..|+.+....   +.+.+.+...+.+..+|.+.  ...+++.|+|.++|++.+
T Consensus         8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~   81 (481)
T 3f8u_A            8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI   81 (481)
T ss_dssp             TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred             HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence            45677666 2223349999999999999999997532   45566666667777777765  557899999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  .|+.+..+.|..+.+.++..|...+.
T Consensus        82 ~~--~g~~~~~~~G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           82 FR--DGEEAGAYDGPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             EE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred             Ee--CCceeeeecCccCHHHHHHHHHhhcc
Confidence            95  68888889999999999888877664

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.00  E-value=2.2e-05  Score=56.96  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             EEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCC-
Q 019378           81 LLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMV-  159 (342)
Q Consensus        81 LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~-  159 (342)
                      +.|+|+++||..|+.+...+   +++.+-...++.+..++     ...++..|++.++|+++|    +|+.+..  |.. 
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~~~~~--G~~~   67 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGELKIM--GRVA   67 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTEEEEC--SSCC
T ss_pred             cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCEEEEc--CCCC
Confidence            46899999999999996543   44555555678888776     346788999999999988    5887655  887 


Q ss_pred             ChHHHHHHH
Q 019378          160 QPESLLEDL  168 (342)
Q Consensus       160 ~~~~~l~~L  168 (342)
                      +.+++.+.|
T Consensus        68 ~~~~l~~~l   76 (77)
T 1ilo_A           68 SKEEIKKIL   76 (77)
T ss_dssp             CHHHHHHHC
T ss_pred             CHHHHHHHh
Confidence            888876543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.99  E-value=2.4e-05  Score=66.16  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------Ch-hHHHHH----------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------TS-EGKKVC----------------  130 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s~-eg~~~~----------------  130 (342)
                      .+|++||+|..+||.+|. .... |  ..+.+-+ ..++.++.++.+        +. +...++                
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~  106 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKE-L--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV  106 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHH-H--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred             CCCEEEEEEEecCCCcch-hHHH-H--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence            589999999999999999 4322 1  1222222 235888888763        21 122233                


Q ss_pred             --------------HhCCCCCCc------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          131 --------------TYYKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       131 --------------~~y~v~~~P------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                                    ..|++..+|      +++|||+ +|.++.++.|..+++.+...|...+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             CCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                          246788899      9999997 79999999999999988888887765

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.98  E-value=4.9e-05  Score=63.52  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Chh-HHHHHH-hC------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVCT-YY------------  133 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~e-g~~~~~-~y------------  133 (342)
                      .+|++||+|..+||..|......+   .++.+-+. .++.++.++.+        +.+ ...++. .|            
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  107 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV  107 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence            589999999999999998764332   12222222 35888888764        222 233444 32            


Q ss_pred             -----------------CC--CCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          134 -----------------KL--DSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       134 -----------------~v--~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                                       ++  ..+|   +++|||+ .|+++.++.|..+++++...|...+.
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                             33  5678   9999997 79999999999999988888877664

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.98  E-value=2.2e-05  Score=67.30  Aligned_cols=92  Identities=14%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC--------hh-------------------H
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT--------SE-------------------G  126 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s--------~e-------------------g  126 (342)
                      .+|++||+|.++||..|....      +.+.++.+   +.+.++.++.+.        .+                   .
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~  105 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET  105 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred             CCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc
Confidence            579999999999999998754      33333332   237778877742        11                   2


Q ss_pred             HHHHHhCCCCCCcEEEEEeCCCCceEEE--------EeCCCChHHHHHHHHhhhhcC
Q 019378          127 KKVCTYYKLDSIPVVLVVDPITGQKMRS--------WCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~--------~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ..++..|++..+|+++|||+ +|+++.+        ..|..+++++...|...+...
T Consensus       106 ~~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          106 QEVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             SHHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             chHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            34677899999999999997 7888876        112236788988888888754

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.97  E-value=1.1e-05  Score=65.91  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhH------------------------HH
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEG------------------------KK  128 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg------------------------~~  128 (342)
                      .+|++||+|..+||.+|....      +.+.++.+    .++.++.++.+....                        ..
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE  104 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred             CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence            689999999999999999874      45555554    358888887764321                        25


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      ++..|++..+|+++|||+ +|+++.+.   ++++++.+.|
T Consensus       105 ~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l  140 (143)
T 4fo5_A          105 LYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEIL  140 (143)
T ss_dssp             HHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHH
T ss_pred             HHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHH
Confidence            677899999999999997 78988664   3455555444

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.94  E-value=2.9e-05  Score=73.64  Aligned_cols=99  Identities=13%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      +-..+|++.+   ...+|++||+|+++||..|+.+...+   ..+.+.+..  ++++..+|.+...    +..|++.+||
T Consensus       254 l~~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~P  323 (361)
T 3uem_A          254 LVGKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFP  323 (361)
T ss_dssp             ECTTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSS
T ss_pred             eecCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccC
Confidence            3345676655   45789999999999999999986432   334444444  4999999987766    5789999999


Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      +++++....|+.+..+.|..+.+.|+..|..
T Consensus       324 t~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~  354 (361)
T 3uem_A          324 TLKFFPASADRTVIDYNGERTLDGFKKFLES  354 (361)
T ss_dssp             EEEEECSSSSCCCEECCSCSSHHHHHHHHTT
T ss_pred             eEEEEECCCCcceeEecCCCCHHHHHHHHHh
Confidence            9999975445677888999999988765543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.94  E-value=2e-05  Score=77.82  Aligned_cols=102  Identities=11%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      .-..+|++++   ...+|++||+|+++||..|+.+...+   ..+.+.+.+  ++++..+|.+..   .++..|++.++|
T Consensus       357 ~~~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~P  427 (481)
T 3f8u_A          357 VVAENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFP  427 (481)
T ss_dssp             ECTTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSS
T ss_pred             ecccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccC
Confidence            3345676665   34689999999999999999996543   445555554  699999998765   467789999999


Q ss_pred             EEEEEeCCCCce-EEEEeCCCChHHHHHHHHhhhh
Q 019378          140 VVLVVDPITGQK-MRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       140 ~l~ii~p~tG~~-l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++++.. +|++ +.+..|..+.+.|+..|.....
T Consensus       428 t~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          428 TIYFSPA-NKKLNPKKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             EEEEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred             EEEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence            9999974 4443 6788899999999887776554

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.93  E-value=4.3e-05  Score=65.89  Aligned_cols=94  Identities=12%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Chh-HHHHH-Hh-------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TSE-GKKVC-TY-------------  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~e-g~~~~-~~-------------  132 (342)
                      .+|++||+|..+||..|......+   .++.+-+. .++.++.++.+        +.+ ...++ ..             
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~  123 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV  123 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence            689999999999999997654221   12222222 35777777765        322 23344 21             


Q ss_pred             ----------------CCCCCCc------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          133 ----------------YKLDSIP------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       133 ----------------y~v~~~P------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                                      |++..+|      +++|||+ .|+++.++.|..+++++...|...+..
T Consensus       124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             CcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                            4666788      9999997 799999999999999999988888764

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.90  E-value=6.2e-05  Score=71.38  Aligned_cols=97  Identities=13%  Similarity=0.187  Sum_probs=73.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhc------ccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCC
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRD------TWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rd------vl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      .+|++++    .+++++||+|+++||. |+.+...      +|.  .+.+.+.. ++.+..+|.+..  ..+++.|+|.+
T Consensus        19 ~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~   89 (350)
T 1sji_A           19 KNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDE   89 (350)
T ss_dssp             HHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCS
T ss_pred             HHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCc
Confidence            3465554    5689999999999999 8665332      132  45566665 589998888654  56899999999


Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ||++.++.  .|+ +....|..+++.+.+.|...+.
T Consensus        90 ~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~~~~  122 (350)
T 1sji_A           90 EGSLYVLK--GDR-TIEFDGEFAADVLVEFLLDLIE  122 (350)
T ss_dssp             TTEEEEEE--TTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred             cceEEEEE--CCc-EEEecCCCCHHHHHHHHHHhcC
Confidence            99999995  577 5578899999998877766554

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.88  E-value=6.6e-05  Score=71.89  Aligned_cols=102  Identities=14%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcc-c---CCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDT-W---ANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLD  136 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdv-l---~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~  136 (342)
                      +-..+|++++    +.++++||+|+.+||..| .+|+.. +   .-+.+...+.. ++.+..+|.+.  ...+|+.|+|.
T Consensus        18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~--~~~l~~~~~V~   90 (367)
T 3us3_A           18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLT   90 (367)
T ss_dssp             CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT--THHHHHHHTCC
T ss_pred             CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc--cHHHHHHcCCC
Confidence            3467888877    457999999999999886 444311 0   11344555554 58888888875  45799999999


Q ss_pred             CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          137 SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +||++.++.  .|+.+ ...|..+++.++..|...+.
T Consensus        91 ~~PTl~~f~--~G~~~-~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           91 EEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             STTEEEEEE--TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             cCceEEEEE--CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence            999999997  57764 78899999999888877654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.87  E-value=0.0001  Score=61.38  Aligned_cols=93  Identities=14%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCC--------h-hHHHH-HHhC------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDT--------S-EGKKV-CTYY------------  133 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s--------~-eg~~~-~~~y------------  133 (342)
                      .+||+||+|..+||..|......+   ..+.+-+. .++.++.++.+.        . +...+ ...|            
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  106 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQL---QEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKV  106 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCC
T ss_pred             CCCEEEEEEeeccCCchHHHHHHH---HHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEee
Confidence            589999999999999997654321   11222222 357777777642        1 22333 1221            


Q ss_pred             -----------------C-----CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          134 -----------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       134 -----------------~-----v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                                       +     +..+|+++|||+ +|+++.++.|..+++.+...|...+.
T Consensus       107 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~  167 (169)
T 2v1m_A          107 NGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLE  167 (169)
T ss_dssp             SSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred             cCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhc
Confidence                             2     334689999997 79999999999899988888877765

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.86  E-value=4.9e-05  Score=63.10  Aligned_cols=78  Identities=10%  Similarity=-0.039  Sum_probs=59.3

Q ss_pred             cCC-eEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChh---------------------HHHH
Q 019378           77 QDK-WLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSE---------------------GKKV  129 (342)
Q Consensus        77 ~~K-~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~e---------------------g~~~  129 (342)
                      .+| +++|+|. ++||..|....      +.+.++.+    .++.++.++.++.+                     ...+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  107 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV  107 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred             cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence            466 9999998 99999998764      33444433    36888888877643                     3457


Q ss_pred             HHhCCCC----CCc--EEEEEeCCCCceEEEEeCCCCh
Q 019378          130 CTYYKLD----SIP--VVLVVDPITGQKMRSWCGMVQP  161 (342)
Q Consensus       130 ~~~y~v~----~~P--~l~ii~p~tG~~l~~~~G~~~~  161 (342)
                      +..|++.    .+|  +++|||+ +|.++.++.|..+.
T Consensus       108 ~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~  144 (160)
T 1xvw_A          108 SQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGE  144 (160)
T ss_dssp             HHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTC
T ss_pred             HHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCC
Confidence            7889987    899  9999997 79999999887643

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.85  E-value=6.8e-05  Score=64.90  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-----------------------HHHHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT  131 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-----------------------~~~~~  131 (342)
                      .+|++||+|. .+||..|......+   ..+.+-+. .++.++.++.++.+.                       ..++.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  120 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ  120 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHH
Confidence            4799999999 99999998764322   11222222 368888888776431                       24567


Q ss_pred             hCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378          132 YYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD  173 (342)
Q Consensus       132 ~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~  173 (342)
                      .|++.     .+|+++|||+ +|+++.++.|..    ++++++..|.....
T Consensus       121 ~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          121 AAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             HHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             HhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            78888     8999999997 799999988865    67888888877665

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.84  E-value=5e-05  Score=65.88  Aligned_cols=93  Identities=10%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh--------------------------HHHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE--------------------------GKKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e--------------------------g~~~  129 (342)
                      .+|+++|+|. .+||..|......+-  .-..++-..++.++.++.++.+                          ...+
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  109 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFD--KRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI  109 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHH--HHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence            6899999999 999999987643211  1111222346888888877643                          2356


Q ss_pred             HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      ++.|++.     .+|+++|||+ +|+++.++.|..    ++++++..|....
T Consensus       110 ~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          110 SRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7788998     9999999997 799999988865    5677777766554

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.81  E-value=0.00011  Score=64.96  Aligned_cols=85  Identities=5%  Similarity=0.024  Sum_probs=65.2

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      .+++++|+|+++||..|..+.      +.+.++..  .++.+..+|.+.  ...+++.|++.++|+++|    +|+ +.+
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~----~G~-~~~  201 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDASE--NQDLAEQFQVVGVPKIVI----NKG-VAE  201 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGGG--CHHHHHHTTCCSSSEEEE----GGG-TEE
T ss_pred             CCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECCC--CHHHHHHcCCcccCEEEE----CCE-EEE
Confidence            344558999999999999996      33333333  367888777754  456889999999999998    477 667


Q ss_pred             EeCCCChHHHHHHHHhhhhc
Q 019378          155 WCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       155 ~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +.|..+.++|...|...+..
T Consensus       202 ~~G~~~~~~l~~~l~~~~~~  221 (229)
T 2ywm_A          202 FVGAQPENAFLGYIMAVYEK  221 (229)
T ss_dssp             EESCCCHHHHHHHHHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHhhh
Confidence            89999999998888877753

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.81  E-value=8.1e-05  Score=62.27  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             cCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh-------ccEEEEEeecCC----hhH------------------
Q 019378           77 QDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS-------TNFIFWQVYDDT----SEG------------------  126 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~-------~~FV~w~~~~~s----~eg------------------  126 (342)
                      .+|++||+|..+||.+ |....      +.+.++..       .++.++.++++.    ++.                  
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~  107 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS  107 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred             CCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence            6899999999999997 98764      33444433       257788877652    221                  


Q ss_pred             ----HHHHHhCC---------------CCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhh
Q 019378          127 ----KKVCTYYK---------------LDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF  171 (342)
Q Consensus       127 ----~~~~~~y~---------------v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~  171 (342)
                          ..+++.|+               +..+|+++|||  +|+++.++.|..  +++++++.|...
T Consensus       108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence                24555554               35689999999  699999999987  889988877654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.80  E-value=6.1e-05  Score=64.83  Aligned_cols=91  Identities=14%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecC--------C-hhHHHHHH------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDD--------T-SEGKKVCT------------  131 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~--------s-~eg~~~~~------------  131 (342)
                      .+|++||+|..+||.+|.....      .+.++.    ..++.++.++++        + .+..+++.            
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p------~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~  118 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYE------TATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAK  118 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHH------HHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHH------HHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeec
Confidence            6899999999999999988542      333332    235777777654        1 22222222            


Q ss_pred             ---------------------hCCCCCCc---EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          132 ---------------------YYKLDSIP---VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       132 ---------------------~y~v~~~P---~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                                           .|++..+|   +++|||+ .|.++.++.|..+++++...|...+..
T Consensus       119 ~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          119 INVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             BCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             cccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                                 12344677   9999997 799999999999999998888887763

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.80  E-value=7.6e-05  Score=64.00  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH-----------------------HHHHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG-----------------------KKVCT  131 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg-----------------------~~~~~  131 (342)
                      .+|++||+|. .+||..|......+   ..+.+-+. .++.++.++.++.+.                       ..+++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDV---QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISR  106 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHH
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHH
Confidence            5799999999 99999998764321   11222222 368888888776432                       34667


Q ss_pred             hCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378          132 YYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD  173 (342)
Q Consensus       132 ~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~  173 (342)
                      .|++.      .+|+++|||+ +|.++.++.|..    ++++++..|.....
T Consensus       107 ~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          107 QFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             HTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             HhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            88887      8999999997 799999988864    67888888877664

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.74  E-value=0.00014  Score=62.07  Aligned_cols=90  Identities=11%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------Ch-hHHHHHHhC-------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------TS-EGKKVCTYY-------------  133 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s~-eg~~~~~~y-------------  133 (342)
                      .+||+||+|..+||..|......+   .++.+-+. .++.++.++.+        +. +...++..|             
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~  122 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQL---VDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVN  122 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCS
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHH---HHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccC
Confidence            589999999999999997754321   11222222 35777777654        22 223333322             


Q ss_pred             ------------------C-----CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          134 ------------------K-----LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       134 ------------------~-----v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                                        +     +..+|+++|||+ +|+++.++.|..+++++...|..
T Consensus       123 ~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~  181 (183)
T 2obi_A          123 GDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPH  181 (183)
T ss_dssp             STTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSGG
T ss_pred             CcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHH
Confidence                              2     233599999997 79999999998888887665544

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.74  E-value=0.00026  Score=62.15  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=69.3

Q ss_pred             HcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE-E
Q 019378           76 VQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM-R  153 (342)
Q Consensus        76 ~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l-~  153 (342)
                      .+++.+||+|+++ ||..|+.+... |.  ++.+. ..++.+..+|.+.++...++..|++.++|++.|+.  .|+.. .
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~-~~--~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~   93 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQL-VQ--ELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ--DGKDFGV   93 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHH-HH--HHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE--TTBCCSE
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHH-HH--HHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc--CCceeeE
Confidence            3456778999999 99999998532 21  23322 35788889999887788999999999999999995  46543 6


Q ss_pred             EEeCCCChHHHHHHHHhhhh
Q 019378          154 SWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       154 ~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ++.|..+.+.+...+...++
T Consensus        94 ~~~G~~~~~~l~~~l~~~l~  113 (226)
T 1a8l_A           94 RYFGLPAGHEFAAFLEDIVD  113 (226)
T ss_dssp             EEESCCCTTHHHHHHHHHHH
T ss_pred             EEeccCcHHHHHHHHHHHHh
Confidence            78898877777666666554

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.69  E-value=0.00024  Score=60.53  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecC--------C-hhHHHHHHh-CCCC---------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDD--------T-SEGKKVCTY-YKLD---------  136 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~--------s-~eg~~~~~~-y~v~---------  136 (342)
                      .+|++||+|..+||..|......+   .++.+-+. .++.++.++++        + .+...+++. |++.         
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~  113 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI  113 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence            689999999999999999864321   12222233 35888888754        2 233456655 4331         


Q ss_pred             -----------------CCcE----EEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          137 -----------------SIPV----VLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       137 -----------------~~P~----l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                                       .+|.    .+|||+ .|.++.++.|..+++.+...|...++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~  171 (180)
T 3kij_A          114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ  171 (180)
T ss_dssp             SSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred             cCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence                             2566    899997 799999999999998887777777653

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=97.69  E-value=0.00014  Score=63.38  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=66.5

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~  129 (342)
                      .+||+||+|+ .+||..|......+  +.-..++-..++.++.++.++.+.                          ..+
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~  112 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI  112 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence            5799999999 99999998764321  111122223468888888876432                          246


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      ++.|++.      .+|+++|||+ .|.++.++.|..    +.++++..|....
T Consensus       113 ~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          113 MKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            6778887      8999999997 799998887754    3578877776654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.69  E-value=4.3e-05  Score=80.06  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=69.8

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++++    +.++++||+|+++||..|+.+...+   +.+.+.+...+.+..+|.+..  ..+++.|+|.++|++.++
T Consensus       124 ~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~  194 (780)
T 3apo_A          124 REFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF  194 (780)
T ss_dssp             HHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEE
T ss_pred             HhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEE
Confidence            3555555    7899999999999999999997543   455666666788888887654  358889999999999988


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .  .|+.+.++.|..+++.+...|...+.
T Consensus       195 ~--~g~~~~~~~G~~~~~~l~~~l~~~~~  221 (780)
T 3apo_A          195 R--SGMAAVKYNGDRSKESLVAFAMQHVR  221 (780)
T ss_dssp             C--TTSCCEECCSCSCHHHHHHHHHTTSC
T ss_pred             e--CCcEeeEecCCCCHHHHHHHHHHhch
Confidence            4  68878889999999988887766553

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.67  E-value=0.00029  Score=61.28  Aligned_cols=96  Identities=14%  Similarity=0.126  Sum_probs=65.7

Q ss_pred             HcCCeEEEEEecCCCcc-hhhhhhcccCCHHHHHHHh----ccEEEEEeecC----Chh---------------------
Q 019378           76 VQDKWLLVNLQSTKEFS-SHMLNRDTWANEAVSQTIS----TNFIFWQVYDD----TSE---------------------  125 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~-~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~----s~e---------------------  125 (342)
                      -.+||+||+|..+||.+ |......+   .++.+-+.    .++.++.++++    +++                     
T Consensus        39 ~~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d  115 (200)
T 2b7k_A           39 LLGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFD  115 (200)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHH
T ss_pred             cCCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHH
Confidence            35899999999999998 98753221   11222222    35666666655    222                     


Q ss_pred             -HHHHHHhCCCC-CC---------------cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          126 -GKKVCTYYKLD-SI---------------PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       126 -g~~~~~~y~v~-~~---------------P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                       ...+++.|++. ..               |+++|||+ .|.++..+.|..+++.+.+.|...+...
T Consensus       116 ~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          116 EVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             HHHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence             23566778775 33               37899997 7999999999889999999998888753

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.66  E-value=8.6e-05  Score=63.47  Aligned_cols=93  Identities=13%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------Ch-hHHHHHHh-CC----------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------TS-EGKKVCTY-YK----------  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s~-eg~~~~~~-y~----------  134 (342)
                      -.+|++||+|..+||..|......+   .++.+-+ ..++.++.++.+        +. +...+++. ++          
T Consensus        47 ~~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d  123 (181)
T 2p31_A           47 YRGSVSLVVNVASECGFTDQHYRAL---QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA  123 (181)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred             cCCCEEEEEEeccCCCCcHHHHHHH---HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence            3689999999999999999754321   1222222 235888888765        22 23344443 22          


Q ss_pred             -------------CCCCc-------EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          135 -------------LDSIP-------VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       135 -------------v~~~P-------~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                                   +..+|       +.+|||+ .|+++.++.|..+++++...|...+
T Consensus       124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                         23467       8999997 7999999999999998887776654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.66  E-value=0.00017  Score=62.19  Aligned_cols=93  Identities=12%  Similarity=0.100  Sum_probs=66.4

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~  129 (342)
                      .+|+++|+|+ .+||..|......+-  ....++-..++.++.++.++.+.                          ..+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  107 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALD--KALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI  107 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHH--HHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence            5799999999 999999987643211  11122223568888888876442                          246


Q ss_pred             HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      +..|++.     .+|+++|||+ +|.++..+.|..    +.++++..|....
T Consensus       108 ~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          108 ARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            7789998     8999999997 799998887743    4677777766554

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.64  E-value=0.0002  Score=58.24  Aligned_cols=88  Identities=11%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCC--CcEEEEEeCCCCc
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDPITGQ  150 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p~tG~  150 (342)
                      ...++++|+|+++ |.+|+.+.      +.+.++-+   ..+.|..+|++.  ...++..|++.+  +|+++|+....|+
T Consensus        21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~iPtl~i~~~~~g~   91 (133)
T 2djk_A           21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKFPAFAIQEVAKNQ   91 (133)
T ss_dssp             HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred             cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCcccCCEEEEEecCcCc
Confidence            5678999999998 88998764      33444443   467888878763  345889999999  9999999853466


Q ss_pred             eEEEEe--CCCChHHHHHHHHhhhh
Q 019378          151 KMRSWC--GMVQPESLLEDLVPFMD  173 (342)
Q Consensus       151 ~l~~~~--G~~~~~~~l~~L~~~l~  173 (342)
                      .. .+.  |.++.+.+...|..+++
T Consensus        92 ~~-~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           92 KF-PFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             BC-CCCSSSCCCHHHHHHHHHHHHH
T ss_pred             cc-CCCCccccCHHHHHHHHHHHHc
Confidence            53 554  99999999888888886

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=97.64  E-value=0.00022  Score=63.23  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=67.7

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~  129 (342)
                      .+||+||+|+ .+||..|......+  .....++-..++.++.++.++.+.                          ..+
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i  132 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  132 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHH
Confidence            5799999999 99999999764321  111222323578888888876432                          346


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhhh
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFMD  173 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l~  173 (342)
                      ++.|++.      .+|+++|||+ +|.++..+.|..    +.++++..|.....
T Consensus       133 ~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          133 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence            7788888      8999999997 799998887753    45788877776553

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.63  E-value=0.0003  Score=61.91  Aligned_cols=94  Identities=11%  Similarity=0.118  Sum_probs=63.8

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecC--------C-hhHHHHHH------hCC-----
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDD--------T-SEGKKVCT------YYK-----  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~--------s-~eg~~~~~------~y~-----  134 (342)
                      -.+|++||+|..+||.+|......+   .++.+-+ ...+.++.++.+        + .+...+++      .|+     
T Consensus        45 ~~Gk~vlv~FwatwC~~C~~e~p~l---~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~  121 (208)
T 2f8a_A           45 LRGKVLLIENVASLGGTTVRDYTQM---NELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFML  121 (208)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEE
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHH---HHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEE
Confidence            4689999999999999998743221   1222222 245888888765        1 22334443      332     


Q ss_pred             ------------------------------------------------CCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          135 ------------------------------------------------LDSIPVVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       135 ------------------------------------------------v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                                                                      +...|+.+|||+ .|+++.++.|..+++++..
T Consensus       122 l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~l~~  200 (208)
T 2f8a_A          122 FEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTIDIEP  200 (208)
T ss_dssp             BCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHH
T ss_pred             EEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHHHHH
Confidence                                                            222488999996 7999999999999988888


Q ss_pred             HHHhhhh
Q 019378          167 DLVPFMD  173 (342)
Q Consensus       167 ~L~~~l~  173 (342)
                      .|...+.
T Consensus       201 ~I~~ll~  207 (208)
T 2f8a_A          201 DIEALLS  207 (208)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            7776653

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.62  E-value=0.00035  Score=61.70  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH--------------------------HHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG--------------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg--------------------------~~~  129 (342)
                      .+||+||+|+ .+||..|......+  ++...+|-..++.++.++.++.+.                          ..+
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  128 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI  128 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence            6799999999 99999998865321  111122223578888888876442                          246


Q ss_pred             HHhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          130 CTYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      ++.|++.     .+|+++|||+ +|.++..+.|..    +.++++..|....
T Consensus       129 ~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          129 SKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6788888     8999999997 799988877643    4788888777654

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.56  E-value=0.00021  Score=60.95  Aligned_cols=94  Identities=10%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             HHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH
Q 019378           50 NLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK  127 (342)
Q Consensus        50 ~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~  127 (342)
                      ++.+.|....   ....+.+++  +.-.+|+++|+|..+||.+|..+.      |.+.++..  .++.+..++++  +..
T Consensus        31 ~~~~~~~~~~---~~~~~~~~l--~~~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~   97 (167)
T 1z6n_A           31 RFRQKLESNG---LPSALTERL--QRIERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAE   97 (167)
T ss_dssp             HHHHHHHHHC---CCHHHHHHH--HTCCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHH
T ss_pred             HHHHHHHccC---CCHHHHHHH--HHhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCH
Confidence            5666665321   222333333  233679999999999999999985      34444433  35777766654  455


Q ss_pred             HHHHhCC---CCCCcEEEEEeCCCCceEEEEeC
Q 019378          128 KVCTYYK---LDSIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       128 ~~~~~y~---v~~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      .++..|.   +.++|+++|++. .|+++.++.|
T Consensus        98 ~~~~~~~~~~v~~iPt~i~~~~-~G~~~~~~g~  129 (167)
T 1z6n_A           98 DDLRQRLALERIAIPLVLVLDE-EFNLLGRFVE  129 (167)
T ss_dssp             HHTTTTTTCSSCCSSEEEEECT-TCCEEEEEES
T ss_pred             HHHHHHHHcCCCCcCeEEEECC-CCCEEEEEcC
Confidence            6777786   999999999996 5788888844

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.55  E-value=0.00038  Score=59.56  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCC--------h-hHHHHHHhCCC--------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDT--------S-EGKKVCTYYKL--------  135 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s--------~-eg~~~~~~y~v--------  135 (342)
                      .+|++||+|..+||..|.....      .+.++.    ..++.++.++.+.        . +...+++.|++        
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~------~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  121 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYT------QLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKI  121 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHH------HHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCC
T ss_pred             CCCEEEEEEecCCCCchHHHHH------HHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeee
Confidence            6899999999999999976532      233322    2357777776542        2 23344443322        


Q ss_pred             ----------------------------CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          136 ----------------------------DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       136 ----------------------------~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                                                  ..+|+++|||+ .|+++.++.|..+++++...|...
T Consensus       122 d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          122 CVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             BSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             ccCChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                        12589999997 799999999988888776665543

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.55  E-value=0.00089  Score=57.82  Aligned_cols=119  Identities=13%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             HHHHHhhCCCCcC-cccccHHHHHHHHHHcCCeEEEEEec-------CCCcchhhhhhcccCCHHHHHHHh-----ccEE
Q 019378           49 DNLASLYRPPFHL-MFNGSFEKAKDAASVQDKWLLVNLQS-------TKEFSSHMLNRDTWANEAVSQTIS-----TNFI  115 (342)
Q Consensus        49 ~~l~~~f~pp~~~-~f~gs~~eA~~~Ak~~~K~LlV~l~~-------~~~~~~~~f~rdvl~~~~V~~~i~-----~~FV  115 (342)
                      ..|.++-.+...+ +-..+|++.+.  ...+.++||+|..       .||..|+.|... |  +.|.+-..     .+.+
T Consensus         9 ~~l~~l~~~~~vi~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~-~--e~lA~~~~~~~~~~~v~   83 (178)
T 3ga4_A            9 DDILQLKDDTGVITVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFEKT-Y--HAVADVIRSQAPQSLNL   83 (178)
T ss_dssp             HHHHTTCCTTSEEECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHH-H--HHHHHHHHHHCTTCCEE
T ss_pred             HHHHHhhccCCCEECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHH-H--HHHHHHhhhccCCCCEE
Confidence            3444444433333 45678987553  3456799999999       499999999532 1  22333333     5788


Q ss_pred             EEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCce----------EEEE---eC-CCChHHHHHHHHhhhhc
Q 019378          116 FWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQK----------MRSW---CG-MVQPESLLEDLVPFMDG  174 (342)
Q Consensus       116 ~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~----------l~~~---~G-~~~~~~~l~~L~~~l~~  174 (342)
                      |..+|++.  ...+++.|+|.++|+|+++.+-.+..          -..+   .| ..+++.|.+.|..-+..
T Consensus        84 f~kvD~d~--~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~  154 (178)
T 3ga4_A           84 FFTVDVNE--VPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNI  154 (178)
T ss_dssp             EEEEETTT--CHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTC
T ss_pred             EEEEECcc--CHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCC
Confidence            88888774  77899999999999999998743222          1222   24 67888888877766653

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.54  E-value=0.00047  Score=57.67  Aligned_cols=93  Identities=11%  Similarity=0.163  Sum_probs=60.3

Q ss_pred             cCCeEEEEEecCCCc-chhhhhhcccCCHHHHHHHhc---cEEEEEeecC----ChhH-HHHHHh---------------
Q 019378           77 QDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTIST---NFIFWQVYDD----TSEG-KKVCTY---------------  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~-~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~----s~eg-~~~~~~---------------  132 (342)
                      .+|++||+|..+||. .|......+   ..+.+.+.+   ++.++.++.+    +.+. ..+++.               
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~  108 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS  108 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence            579999999999998 886543211   112222222   2666666654    2221 122221               


Q ss_pred             ----------------------CCCCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhhh
Q 019378          133 ----------------------YKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFMD  173 (342)
Q Consensus       133 ----------------------y~v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l~  173 (342)
                                            |.+...|+++|||+ .|.++.++.|..  +++++++.|...+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence                                  34566899999997 799999999975  57888888877664

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=97.54  E-value=0.00026  Score=74.07  Aligned_cols=119  Identities=8%  Similarity=0.024  Sum_probs=83.8

Q ss_pred             HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378           48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK  127 (342)
Q Consensus        48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~  127 (342)
                      ...|-..+.++..  ..-+-+.........+|+++|+|+.+||.+|+.+...+   ..+.+-...++.+..+|.+.  ..
T Consensus       647 l~~fi~~~~~~~v--~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~--~~  719 (780)
T 3apo_A          647 LRSWGLGFLPQAS--IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQA--YP  719 (780)
T ss_dssp             HHHHHHTTSCCCS--EEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTT--CH
T ss_pred             HHHHHhhhccccc--ccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCC--CH
Confidence            4444455555532  22233333334456789999999999999999986443   44555555678888888765  34


Q ss_pred             HHHHhCCCCCCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHhhhhcC
Q 019378          128 KVCTYYKLDSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       128 ~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~~l~~~  175 (342)
                      .++..|++.++|+++++.  .|+.+.++.|    ..+.+.|...|...+...
T Consensus       720 ~~~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~  769 (780)
T 3apo_A          720 QTCQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL  769 (780)
T ss_dssp             HHHHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred             HHHHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence            688999999999999993  5777766666    479999999888887643

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=97.53  E-value=0.0003  Score=62.16  Aligned_cols=92  Identities=15%  Similarity=0.148  Sum_probs=66.5

Q ss_pred             cCCe-EEEEEecCCCcchhhhhhcccCCHHHHHHH---h-ccEEEEEeecCC--------hh------------------
Q 019378           77 QDKW-LLVNLQSTKEFSSHMLNRDTWANEAVSQTI---S-TNFIFWQVYDDT--------SE------------------  125 (342)
Q Consensus        77 ~~K~-LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~-~~FV~w~~~~~s--------~e------------------  125 (342)
                      .+|+ +||+|..+||..|.....      .+.++.   . .++.++.++.+.        .+                  
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~------~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D  130 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIRE------ALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD  130 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHH------HHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred             CCCCeEEEEEECCCCccHHHHHH------HHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence            5785 999999999999987643      343333   2 358888888842        11                  


Q ss_pred             -HHHHHHhCCCCCCcEEEEEeCCCCceEEEEe---------CCCChHHHHHHHHhhhhcC
Q 019378          126 -GKKVCTYYKLDSIPVVLVVDPITGQKMRSWC---------GMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       126 -g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~---------G~~~~~~~l~~L~~~l~~~  175 (342)
                       ...++..|++..+|+++|||+ +|+++.+..         |..+.+++...|...+...
T Consensus       131 ~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          131 ASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             TTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             CccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence             235778899999999999997 788875532         2345788888888887654

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=96.67  E-value=1.3e-05  Score=66.72  Aligned_cols=97  Identities=9%  Similarity=0.030  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCCh--hHHHHH----------------
Q 019378           70 AKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTS--EGKKVC----------------  130 (342)
Q Consensus        70 A~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~--eg~~~~----------------  130 (342)
                      .+..+.-.+|++||+|..+||..|..+... |...-...+- ..++.++.++.+..  ...++.                
T Consensus        25 ~~~l~~~~gk~vll~f~a~~C~~C~~~~~~-l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~  103 (159)
T 2ls5_A           25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPF-IEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGAD  103 (159)
Confidence            444455578999999999999999887543 2221111222 34677777666543  122333                


Q ss_pred             --HhCC--CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 019378          131 --TYYK--LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       131 --~~y~--v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                        ..|+  +..+|+++|||+ +|+++.++.| .+++++.+.|.
T Consensus       104 ~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g-~~~~~l~~~l~  144 (159)
T 2ls5_A          104 IFAKYALRDAGITRNVLIDR-EGKIVKLTRL-YNEEEFASLVQ  144 (159)
Confidence              3444  456999999997 7998888877 34555444333

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.50  E-value=0.00073  Score=60.87  Aligned_cols=88  Identities=10%  Similarity=0.075  Sum_probs=66.1

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      .++..+|+|+++||..|..+... |.  .+.....    .++.+..+|++.  ...++..|++.++|+++|    +|+.+
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~-l~--~la~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~V~~vPt~~i----~G~~~  207 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLL-AH--MFAYEAWKQGNPVILSEAVEAYE--NPDIADKYGVMSVPSIAI----NGYLV  207 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHH-HH--HHHHHHHHTTCCCEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEEE
T ss_pred             CCCcEEEEEECCCCCCcHHHHHH-HH--HHHHHcccccCCcEEEEEEECcc--CHHHHHHcCCeeeCeEEE----CCEEE
Confidence            46788999999999999998532 21  1222221    468888888764  346788999999999988    57754


Q ss_pred             EEEeCCCChHHHHHHHHhhhhcC
Q 019378          153 RSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       153 ~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                        +.|..+.++|+..|...+..+
T Consensus       208 --~~G~~~~~~l~~~l~~~~~~~  228 (243)
T 2hls_A          208 --FVGVPYEEDFLDYVKSAAEGR  228 (243)
T ss_dssp             --EESCCCHHHHHHHHHHHHTTC
T ss_pred             --EeCCCCHHHHHHHHHHHhhcc
Confidence              889999999999988888753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.46  E-value=0.00021  Score=70.77  Aligned_cols=104  Identities=8%  Similarity=0.051  Sum_probs=70.7

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--------ccEEEEEeecCChhHHHHHHhCC
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--------TNFIFWQVYDDTSEGKKVCTYYK  134 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--------~~FV~w~~~~~s~eg~~~~~~y~  134 (342)
                      -..+|++++.  ...+|++||+|+.+||..|+.+...+   +.+.+.+.        +.+++..+|++..  ..++..|+
T Consensus        29 t~~~F~~~l~--~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~--~~la~~y~  101 (470)
T 3qcp_A           29 SGDDFSRVHR--VAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASE--VDLCRKYD  101 (470)
T ss_dssp             SCSCGGGTCT--TGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTC--HHHHHHTT
T ss_pred             CHHHHHHHHH--hCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCC--HHHHHHcC
Confidence            3456766653  24669999999999999999996432   33333333        1488999888753  57899999


Q ss_pred             CCCCcEEEEEeCCCCceE------------EEEeCCCChHHHHHHHHhhhh
Q 019378          135 LDSIPVVLVVDPITGQKM------------RSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l------------~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      |..+|+++|+++..+..+            .-+...++.+++...+...++
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin  152 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN  152 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence            999999999986433222            122334677776666555553

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.46  E-value=0.00014  Score=72.26  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=72.4

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      ..+|++.+   ...+|++||+|+++||..|+.+...+   ..+.+.+.   .++++..+|.+..+   ... |++.+||+
T Consensus       365 ~~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt  434 (504)
T 2b5e_A          365 GKNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPT  434 (504)
T ss_dssp             TTTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSE
T ss_pred             cccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCe
Confidence            44566654   45789999999999999999996543   23434333   37999998886544   233 99999999


Q ss_pred             EEEEeCCCCce--EEEEeCCCChHHHHHHHHhhhh
Q 019378          141 VLVVDPITGQK--MRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       141 l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ++++ + .|+.  +.++.|..+.+.|+..|...+.
T Consensus       435 ~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          435 IVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             EEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             EEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence            9999 3 5765  6677898999999887776544

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.41  E-value=0.00032  Score=62.21  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             HcCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH------------------------
Q 019378           76 VQDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------  126 (342)
Q Consensus        76 ~~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg------------------------  126 (342)
                      -.+|++||+|.. +||..|....      +.+.++.    ..++.++.++.++.+.                        
T Consensus        67 ~~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D  140 (222)
T 3ztl_A           67 YRGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLAD  140 (222)
T ss_dssp             GTTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEEC
T ss_pred             hCCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeC
Confidence            368999999994 9999999864      3333333    2468888888887542                        


Q ss_pred             --HHHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCCC----hHHHHHHHH
Q 019378          127 --KKVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMVQ----PESLLEDLV  169 (342)
Q Consensus       127 --~~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~~----~~~~l~~L~  169 (342)
                        ..++..|++.      .+|+++|||+ .|.++..+.|..+    .++++..|.
T Consensus       141 ~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~  194 (222)
T 3ztl_A          141 RKQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD  194 (222)
T ss_dssp             SSSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             CchHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence              1355678887      8999999997 7999988887543    455555443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.39  E-value=0.00084  Score=55.71  Aligned_cols=79  Identities=14%  Similarity=0.298  Sum_probs=54.7

Q ss_pred             cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCCC
Q 019378           77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKLD  136 (342)
Q Consensus        77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v~  136 (342)
                      .+|+++|+|.. +||..|......+  +....++-..++.++.+..++.+..                   .++..|++.
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l--~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  111 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDF--NALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI  111 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHH--HHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence            57899999997 9999998754321  1111222234688888888776542                   345667775


Q ss_pred             C------------CcEEEEEeCCCCceEEEEeCC
Q 019378          137 S------------IPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       137 ~------------~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      .            .|+++|||+ .|.++..+.|.
T Consensus       112 ~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~  144 (163)
T 3gkn_A          112 KEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV  144 (163)
T ss_dssp             EEEEETTEEEEEECCEEEEECT-TSCEEEEECSC
T ss_pred             cccccccccccCcceEEEEECC-CCeEEEEEcCC
Confidence            5            899999997 79998888653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=96.51  E-value=2.4e-05  Score=63.37  Aligned_cols=75  Identities=19%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             HcCC-eEEEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChh-----------------------HHH
Q 019378           76 VQDK-WLLVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSE-----------------------GKK  128 (342)
Q Consensus        76 ~~~K-~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~e-----------------------g~~  128 (342)
                      -.+| ++||+|+.+||..|..+...+   ..+.+-+   ..++.++.++.+...                       ...
T Consensus        23 ~~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (143)
T 2lus_A           23 LKDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN   99 (143)
Confidence            3577 999999999999999875433   1222222   135566666655332                       135


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      ++..|++..+|+++||++ +|+++.+
T Consensus       100 ~~~~~~v~~~P~~~lid~-~G~i~~~  124 (143)
T 2lus_A          100 VTAKYGITGIPALVIVKK-DGTLISM  124 (143)
Confidence            778899999999999997 6887765

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=97.34  E-value=0.002  Score=57.05  Aligned_cols=95  Identities=12%  Similarity=0.041  Sum_probs=63.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC--------C-hhHHHHHH------hCCCC----
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--------T-SEGKKVCT------YYKLD----  136 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~--------s-~eg~~~~~------~y~v~----  136 (342)
                      =.||++||||..+||.+|..+..  | +.-..+|-...|.+++++.+        + .+...+++      .|++.    
T Consensus        54 ~~GKvvll~FwAt~C~~c~e~p~--L-~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll  130 (215)
T 2i3y_A           54 YVGKHILFVNVATYCGLTAQYPE--L-NALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLF  130 (215)
T ss_dssp             GTTSEEEEEEECSSSGGGGGHHH--H-HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEB
T ss_pred             hCCCEEEEEEeCCCCCChHhHHH--H-HHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeE
Confidence            46899999999999999975531  1 11111222345777777643        1 22344554      44321    


Q ss_pred             ---------------------------------------------CCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          137 ---------------------------------------------SIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       137 ---------------------------------------------~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                                                                   ..|+.+|||+ .|+++.++.|.++++++...|...
T Consensus       131 ~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~-~G~vv~~~~g~~~~~~l~~~I~~l  209 (215)
T 2i3y_A          131 EKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP-DGIPVMRWSHRATVSSVKTDILAY  209 (215)
T ss_dssp             CCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHHH
T ss_pred             eeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHH
Confidence                                                         0167899996 799999999999999988888877


Q ss_pred             hhc
Q 019378          172 MDG  174 (342)
Q Consensus       172 l~~  174 (342)
                      +..
T Consensus       210 l~~  212 (215)
T 2i3y_A          210 LKQ  212 (215)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            753

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=97.31  E-value=0.0023  Score=56.33  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             cEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          139 PVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       139 P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      |+.+|||+ .|.++.++.|.++++++...|...+..
T Consensus       160 ~ttflID~-~G~i~~~~~g~~~~~~l~~~I~~ll~~  194 (207)
T 2r37_A          160 FEKFLVGP-DGIPIMRWHHRTTVSNVKMDILSYMRR  194 (207)
T ss_dssp             TCEEEECT-TSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence            68899996 799999999999999988888777753

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.29  E-value=0.0015  Score=54.51  Aligned_cols=89  Identities=10%  Similarity=0.080  Sum_probs=63.6

Q ss_pred             cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh---------------------HHHHHHh
Q 019378           77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE---------------------GKKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e---------------------g~~~~~~  132 (342)
                      .+|+++|+|..+| |..|.....      .+.++.+  .++.++.++.++++                     ...++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~------~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  116 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTR------RFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA  116 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHH------HHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred             CCCeEEEEEecCCCCCchHHHHH------HHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence            5899999999998 999987643      3333322  56777777766532                     2356778


Q ss_pred             CCCCC------CcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHhhh
Q 019378          133 YKLDS------IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFM  172 (342)
Q Consensus       133 y~v~~------~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~~l  172 (342)
                      |++..      +|+++|||+ +|.++.++.|.     .+.+++++.|...+
T Consensus       117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            88865      499999997 79999888763     24578888777654

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.29  E-value=0.0015  Score=59.39  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEe--cCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC---hhHHHHHHhC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQ--STKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKKVCTYY  133 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~--~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s---~eg~~~~~~y  133 (342)
                      +-..+|++.+    ..++++||.|+  .+||.    |. .+|  +.+..-+.   .++++..+|++.   .+...++..|
T Consensus        21 Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~-P~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~   89 (248)
T 2c0g_A           21 LDELSFEKTV----ERFPYSVVKFDIASPYGE----KH-EAF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRY   89 (248)
T ss_dssp             CCTTTHHHHH----TTSSEEEEEEEESSCCSH----HH-HHH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT
T ss_pred             CCHHHHHHHH----hcCCCEEEEEECCCCCCc----cH-HHH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHh
Confidence            3456888855    56789999999  99997    32 222  23444442   479999999876   3367799999


Q ss_pred             CCC--CCcEEEEEeCCCCce--EEEE--eCCCChHHHHHHHHhhhh
Q 019378          134 KLD--SIPVVLVVDPITGQK--MRSW--CGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       134 ~v~--~~P~l~ii~p~tG~~--l~~~--~G~~~~~~~l~~L~~~l~  173 (342)
                      +|.  +||++.++.   |+.  ...+  .|..+.+.|...|...+.
T Consensus        90 ~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           90 KVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            999  999999985   552  4566  798999999888877665

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.28  E-value=0.0016  Score=58.78  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEec--CCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCC---hhHHHHHHhCCC
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQS--TKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDT---SEGKKVCTYYKL  135 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~--~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s---~eg~~~~~~y~v  135 (342)
                      -..+|++.+    ..++++||+|+.  +||.    |. .+|  +.+...+.  .++++..+|++.   .+...++..|+|
T Consensus        11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A           11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            456777765    467999999999  9987    32 222  23444443  469999999764   345779999999


Q ss_pred             C--CCcEEEEEeCCCCc--eEEEEeCCCChHHHHHHHHhhh
Q 019378          136 D--SIPVVLVVDPITGQ--KMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       136 ~--~~P~l~ii~p~tG~--~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      .  +||++.++.  .|+  .+..+.|..+.+.|+..|....
T Consensus        80 ~~~~~PTl~~f~--~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           80 DKESYPVFYLFR--DGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             CGGGCSEEEEEE--TTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEe--CCCcCcceeecCCCCHHHHHHHHHHhc
Confidence            9  999999996  466  3567889999998888777664

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.22  E-value=0.0013  Score=51.58  Aligned_cols=80  Identities=23%  Similarity=0.353  Sum_probs=59.5

Q ss_pred             CCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-
Q 019378          255 EEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-  333 (342)
Q Consensus       255 ~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-  333 (342)
                      +||..+.....+|.||..+|+.+.-.+..++||..|..-|... .+.+....+|+..  .+.  |  +.+.||.++|+. 
T Consensus        14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~   86 (106)
T 1ttn_A           14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPK   86 (106)
T ss_dssp             -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSS
T ss_pred             CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-HCcCcccEEEEEC--CEE--C--CCCCcHHHcCCCC
Confidence            5565555677899999999999999999999999999999875 4667777888754  442  4  458999999998 


Q ss_pred             CceEEEEe
Q 019378          334 NAMISVTW  341 (342)
Q Consensus       334 ~~~l~v~w  341 (342)
                      +++|++..
T Consensus        87 g~ti~lv~   94 (106)
T 1ttn_A           87 DYVVQVIV   94 (106)
T ss_dssp             SCEEEEEC
T ss_pred             CCEEEEEE
Confidence            57777654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.20  E-value=0.002  Score=54.41  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=60.9

Q ss_pred             cCCeEEEEEecCCCc-chhhhhhcccCCHHHHHHHh---ccEEEEEeecC-----------------------------C
Q 019378           77 QDKWLLVNLQSTKEF-SSHMLNRDTWANEAVSQTIS---TNFIFWQVYDD-----------------------------T  123 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~-~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~-----------------------------s  123 (342)
                      .+||+||+|..+||. .|......+   .++.+-+.   .++.++.+..+                             .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l---~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~  103 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSL---LKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTS  103 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHH---HTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHH---HHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCH
Confidence            489999999999997 486543211   01111121   23444444332                             1


Q ss_pred             hhHHHHHHhCCC---------CCCcEEEEEeCCCCceEEEEeCC-CChHHHHHHHHhhhhcC
Q 019378          124 SEGKKVCTYYKL---------DSIPVVLVVDPITGQKMRSWCGM-VQPESLLEDLVPFMDGG  175 (342)
Q Consensus       124 ~eg~~~~~~y~v---------~~~P~l~ii~p~tG~~l~~~~G~-~~~~~~l~~L~~~l~~~  175 (342)
                      .+...+++.|++         ...|+++|||| .|.++..+.|. .++++++..|.......
T Consensus       104 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A          104 EDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEG  164 (170)
T ss_dssp             HHHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence            233456666553         44689999998 79999888885 68899998888877654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.19  E-value=0.0032  Score=55.29  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=66.8

Q ss_pred             ccHHHHHHHHH--HcCCeEEEEEe-----cCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhCCC
Q 019378           65 GSFEKAKDAAS--VQDKWLLVNLQ-----STKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYYKL  135 (342)
Q Consensus        65 gs~~eA~~~Ak--~~~K~LlV~l~-----~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y~v  135 (342)
                      +.-.+.++..-  +..++++|.+.     .+||..|+.|... |  .++..-+  ..++.+..+|.+.  ...++..|+|
T Consensus         5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~v   79 (229)
T 2ywm_A            5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKE-T--VEVIGEAVGQDKIKLDIYSPFT--HKEETEKYGV   79 (229)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHH-H--HHHHHHHHCTTTEEEEEECTTT--CHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHH-H--HHHHhccCCCCceEEEEecCcc--cHHHHHHcCC
Confidence            33344444433  45567766666     4556666666533 1  1222222  4678887776653  5779999999


Q ss_pred             CCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          136 DSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       136 ~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .+||++.++.  .|....++.|..+.++|...+...+.
T Consensus        80 ~~~Ptl~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~  115 (229)
T 2ywm_A           80 DRVPTIVIEG--DKDYGIRYIGLPAGLEFTTLINGIFH  115 (229)
T ss_dssp             CBSSEEEEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred             CcCcEEEEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence            9999999995  46667788898888888777666654

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.15  E-value=0.0004  Score=52.03  Aligned_cols=72  Identities=10%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ..|+||-|+|..... ...++++.+|++-|...+ +.....+.|..++|++. .+..+.+.||+++||. +.+|.|
T Consensus         5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~-~i~~~~~~l~~~~~p~~-~l~~~~~~~l~~lgl~hGd~l~l   77 (80)
T 2pjh_A            5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEF-GFQNNGFSVYINRNKTG-EITASSSKSLHLLKIKHGDLLFL   77 (80)
T ss_dssp             CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHT-CCCTTTCCCCCSCCGGG-GSSSCCCCTTTTTCCCTTCCEEC
T ss_pred             EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHc-CCCCCcceEEecCCCCC-cccCCCCCCHHHcCCCCCCEEEE
Confidence            569999999974333 678899999999998876 44567888998999843 3444579999999998 455554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.12  E-value=0.0013  Score=55.80  Aligned_cols=74  Identities=11%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             cCCeEEEEEecCC-CcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhH--------------------HHHHHhCC
Q 019378           77 QDKWLLVNLQSTK-EFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEG--------------------KKVCTYYK  134 (342)
Q Consensus        77 ~~K~LlV~l~~~~-~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg--------------------~~~~~~y~  134 (342)
                      .+|++||+|...| |..|....      +.+.++.+ .++.++.++.++++.                    ..+++.|+
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  116 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYG  116 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTT
T ss_pred             CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhC
Confidence            4799999999988 99998754      34444443 567777777775542                    23667888


Q ss_pred             CCCC---------cEEEEEeCCCCceEEEEeC
Q 019378          135 LDSI---------PVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       135 v~~~---------P~l~ii~p~tG~~l~~~~G  157 (342)
                      +...         |+++|||+ +|+++..+.|
T Consensus       117 v~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g  147 (175)
T 1xvq_A          117 VTIADGPMAGLLARAIVVIGA-DGNVAYTELV  147 (175)
T ss_dssp             CBBCSSTTTTSBCSEEEEECT-TSBEEEEEEC
T ss_pred             CcccccccCCcccceEEEECC-CCeEEEEEEC
Confidence            8665         99999997 7999988864

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.11  E-value=0.0014  Score=59.49  Aligned_cols=93  Identities=13%  Similarity=0.040  Sum_probs=65.2

Q ss_pred             cCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HHHH
Q 019378           77 QDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KKVC  130 (342)
Q Consensus        77 ~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~~~  130 (342)
                      .+||+ |+++..++|+.|......+  +....+|-..++.++++++++.+.                         ..++
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia  109 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  109 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHH
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHH
Confidence            67885 5577889999998764221  111222334579999999887542                         2466


Q ss_pred             HhCCCC-------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          131 TYYKLD-------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       131 ~~y~v~-------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      ..|++.       .+|.++|||| .|.++..+.|..    +.++++..|....
T Consensus       110 ~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          110 RRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            788886       8999999998 789888877754    5788887776554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.05  E-value=0.0024  Score=49.30  Aligned_cols=83  Identities=18%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      ..++.+|+++.+||..|+.+.. +|.      -+..++-+..+|+++++...++..|+ .++|++. +   +|+.+ .+ 
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~-~L~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l~-~---~g~~~-~~-   79 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKE-VLQ------PYKDRFILQEVDITLPENSTWYERYK-FDIPVFH-L---NGQFL-MM-   79 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHH-HTS------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEEE-E---SSSEE-EE-
T ss_pred             CCCCEEEEEeCCCCcchHHHHH-HHH------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEEE-E---CCEEE-Ee-
Confidence            3466788899999999999853 222      11234566677887556678899999 9999763 4   46654 33 


Q ss_pred             CCCChHHHHHHHHhhhh
Q 019378          157 GMVQPESLLEDLVPFMD  173 (342)
Q Consensus       157 G~~~~~~~l~~L~~~l~  173 (342)
                      |..+++.+...|..+++
T Consensus        80 ~g~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           80 HRVNTSKLEKQLRKLSG   96 (100)
T ss_dssp             SSCCHHHHHHHHHSSSC
T ss_pred             cCCCHHHHHHHHHHHHh
Confidence            45788887776665543

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.03  E-value=0.0036  Score=48.79  Aligned_cols=72  Identities=19%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             CCCeeEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-Cc
Q 019378          261 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NA  335 (342)
Q Consensus       261 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~  335 (342)
                      ..+.++|.||+|+    |+.+.-....++||..|-.-|... .+.++...+|+.+  .+.  |  +.+.||.+.|+. ++
T Consensus        12 ~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-~gip~~qQrLI~~--GKi--L--~D~~TL~~y~I~~gs   84 (100)
T 1wju_A           12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-FGLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNV   84 (100)
T ss_dssp             CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-TTCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSE
T ss_pred             hcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-HCcCHHHeEEEeC--CeE--C--CCCCcHHHcCCCCCC
Confidence            3578999999999    879999999999999999999886 4777888899855  553  5  568999999999 45


Q ss_pred             eEEE
Q 019378          336 MISV  339 (342)
Q Consensus       336 ~l~v  339 (342)
                      +|+|
T Consensus        85 ti~v   88 (100)
T 1wju_A           85 KAMV   88 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5644

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=97.02  E-value=0.0018  Score=53.93  Aligned_cols=90  Identities=11%  Similarity=0.136  Sum_probs=55.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCCC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKLD  136 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v~  136 (342)
                      .+|+++|+|+ .+||..|..-...+  .....++-..+++++.++.++++..                   .+++.|++.
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~  106 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVA  106 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CC--SCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred             CCCeEEEEecCCCCCCccccchhhc--ccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCc
Confidence            5899999998 89999997643322  1122234445788888888876653                   234455542


Q ss_pred             -----------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHH
Q 019378          137 -----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLV  169 (342)
Q Consensus       137 -----------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~  169 (342)
                                 ..|+++|||+ .|.++..+.|.     .+.++++..|.
T Consensus       107 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~  154 (157)
T 4g2e_A          107 WEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK  154 (157)
T ss_dssp             EECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred             cccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence                       3578899997 78888776542     34566665553

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=97.01  E-value=0.00098  Score=52.15  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh---HHHHHHhCCCCCCcEEEEEe
Q 019378           69 KAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE---GKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        69 eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e---g~~~~~~y~v~~~P~l~ii~  145 (342)
                      +.+....+ ++.++| |+.+||.+|+.+..       +.+-+...|.++.++.+...   ...++..|++.++|++ ++ 
T Consensus        11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~-   79 (116)
T 2e7p_A           11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FI-   79 (116)
T ss_dssp             HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EE-
T ss_pred             HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EE-
Confidence            33444443 456666 89999999998853       22223445777666554421   1457889999999999 55 


Q ss_pred             CCCCceEEEEeCCC---ChHHHHHHHH
Q 019378          146 PITGQKMRSWCGMV---QPESLLEDLV  169 (342)
Q Consensus       146 p~tG~~l~~~~G~~---~~~~~l~~L~  169 (342)
                        +|+.+..+.|..   +.+.|...|.
T Consensus        80 --~g~~v~~~~~~~~~~~~~~l~~~l~  104 (116)
T 2e7p_A           80 --GGKQIGGCDTVVEKHQRNELLPLLQ  104 (116)
T ss_dssp             --TTEEEECHHHHHHHHHTTCHHHHHH
T ss_pred             --CCEEECChHHHHHHHhCChHHHHHH
Confidence              477776555533   4444444333

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.01  E-value=0.002  Score=54.23  Aligned_cols=95  Identities=11%  Similarity=0.072  Sum_probs=63.1

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCC
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKL  135 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v  135 (342)
                      .++||++|+|+ .+||..|..-...+-  +...++-..++.++.++.++++..                   .+++.|++
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~--~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv  108 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTFR--DKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV  108 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEESC--CCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhhh--hhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence            47899999998 899999975322211  112233445678888888776543                   23455655


Q ss_pred             C----------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHhhhh
Q 019378          136 D----------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFMD  173 (342)
Q Consensus       136 ~----------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~~l~  173 (342)
                      .          ..|+++|||+ +|.+...+.|.     .+.++++..|.....
T Consensus       109 ~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          109 YHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             EEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             cccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence            2          3688899997 79988776542     367888888776543

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.00  E-value=0.0045  Score=53.03  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-HH----------------------HHh
Q 019378           77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-KV----------------------CTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-~~----------------------~~~  132 (342)
                      .+|++||+|.. +||..|..-...+  +....++-..++.++.++.++.+.. .+                      ++.
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~  106 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN  106 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHH
Confidence            58999999984 8999998643221  1111222234678888877765432 23                      334


Q ss_pred             CCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          133 YKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       133 y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      |++.      ..|+++|||+ .|.++..+.|..    +.++++..|....
T Consensus       107 ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          107 FDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            5553      3699999997 799998887754    4778877776554

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=96.99  E-value=0.0047  Score=54.78  Aligned_cols=93  Identities=10%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .+|++||+|. .+||..|..-...+  +....+|-..++.++.++.++.+..                          .+
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~  132 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEF--NKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDI  132 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHH
Confidence            6899999999 99999998653221  0111112224677777777664321                          23


Q ss_pred             HHhCCC-----CCCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhhh
Q 019378          130 CTYYKL-----DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM  172 (342)
Q Consensus       130 ~~~y~v-----~~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~l  172 (342)
                      +..|++     ..+|+++|||+ .|.++..+.|.    .+.++++..|....
T Consensus       133 ~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          133 SKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            455666     25899999997 79999888774    35678887777654

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=96.89  E-value=0.0081  Score=45.47  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+..  .+.  +  +.+.||.++|+. +++|.+.
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~   87 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   87 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhhEEEEEC--CeE--C--CCcCcHHHCCCCCCCEEEEE
Confidence            5678999999999999999999999999999998863 666777788764  332  4  457999999998 5677665

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=96.87  E-value=0.0041  Score=55.59  Aligned_cols=90  Identities=10%  Similarity=-0.005  Sum_probs=58.4

Q ss_pred             cCCeEEEEEecCC-Ccchh-----hhhhcccCCHHHHHHHhccEEEEEeecCChhH---------------------HHH
Q 019378           77 QDKWLLVNLQSTK-EFSSH-----MLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KKV  129 (342)
Q Consensus        77 ~~K~LlV~l~~~~-~~~~~-----~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg---------------------~~~  129 (342)
                      .+||++|+|+-.| |+.|.     .--.      .+.+.+ .++.+++++.++++.                     ..+
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~------~~~~~~-~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~v  119 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETR------RFLDSW-PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDF  119 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHH------HHHTTC-TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTH
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHH------HHHHHc-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHH
Confidence            5789999999776 88888     2111      111111 455666666665433                     235


Q ss_pred             HHhCCCCC---------CcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHhhhhc
Q 019378          130 CTYYKLDS---------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPFMDG  174 (342)
Q Consensus       130 ~~~y~v~~---------~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~~l~~  174 (342)
                      +..|++..         .|+++|||+ .|.+...+.+     ..+.++++..|......
T Consensus       120 ak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~  177 (224)
T 3keb_A          120 HKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQ  177 (224)
T ss_dssp             HHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhc
Confidence            56677643         699999997 6888876543     35678888888776654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=96.86  E-value=0.0047  Score=46.69  Aligned_cols=76  Identities=16%  Similarity=0.120  Sum_probs=51.6

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCCh
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP  161 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~  161 (342)
                      ++.++.+||..|..+..       +.+-+...+ +..+|++..  ..++..|++. +|++.+   .+|+.+.   |..++
T Consensus         3 vv~f~a~~C~~C~~~~~-------~L~~~~~~~-~~~vdid~~--~~l~~~~g~~-vPtl~~---~~G~~v~---g~~~~   65 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVE-------ALAQARAGA-FFSVFIDDD--AALESAYGLR-VPVLRD---PMGRELD---WPFDA   65 (87)
T ss_dssp             EEEEECSSCHHHHHHHH-------HHHHTTCCC-EEEEECTTC--HHHHHHHTTT-CSEEEC---TTCCEEE---SCCCH
T ss_pred             EEEEECCCCchHHHHHH-------HHHHHHHhh-eEEEECCCC--HHHHHHhCCC-cCeEEE---ECCEEEe---CCCCH
Confidence            67888999999999842       222223322 345677643  3477889997 999987   3588764   88899


Q ss_pred             HHHHHHHHhhhhc
Q 019378          162 ESLLEDLVPFMDG  174 (342)
Q Consensus       162 ~~~l~~L~~~l~~  174 (342)
                      +.+...|...++.
T Consensus        66 ~~L~~~l~~~~~~   78 (87)
T 1ttz_A           66 PRLRAWLDAAPHA   78 (87)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9888777666553

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=96.83  E-value=0.0081  Score=52.66  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=62.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhHH------------------------
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK------------------------  127 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg~------------------------  127 (342)
                      .+||+||+|+ .+||..|..-.      +.+.++.    ..++.++.++.++.+..                        
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~  120 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL  120 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECT
T ss_pred             CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECC
Confidence            6899999999 99999998643      2233322    24677777777765431                        


Q ss_pred             --HHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          128 --KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       128 --~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                        .+++.|++.      .+|+++|||+ +|.++..+.|..    +.++++..|....
T Consensus       121 ~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          121 THQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             chHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence              234456663      5899999997 799988887643    5678887776654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=96.81  E-value=0.008  Score=51.03  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=59.0

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHhCCC
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTYYKL  135 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~y~v  135 (342)
                      -.+||++|+|. ..||..|..-...+  .....++-..++.++.+..++.+..                   .++..|++
T Consensus        49 ~~Gk~vvl~f~~~~~c~~C~~el~~l--~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv  126 (179)
T 3ixr_A           49 YTNQWLVLYFYPKDNTPGSSTEGLEF--NLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDV  126 (179)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHH--HHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTC
T ss_pred             HCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCC
Confidence            35899999998 88999998643221  1111222234688888888876542                   23456666


Q ss_pred             C------------CCcEEEEEeCCCCceEEEEeCCC---ChHHHHHHHHh
Q 019378          136 D------------SIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVP  170 (342)
Q Consensus       136 ~------------~~P~l~ii~p~tG~~l~~~~G~~---~~~~~l~~L~~  170 (342)
                      .            ..|+++|||+ .|.++..+.|..   ..++++..|..
T Consensus       127 ~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          127 IKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             EEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             cccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            3            2589999998 799988886632   23455555544

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=96.77  E-value=0.013  Score=49.02  Aligned_cols=88  Identities=10%  Similarity=0.076  Sum_probs=55.5

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH-HHH-------------------HhC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK-KVC-------------------TYY  133 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~-~~~-------------------~~y  133 (342)
                      .+||++|+|. ..||..|..-.      +.+.++..  .++.++.+..++++.. +++                   +.|
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  119 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETET------KKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKY  119 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHH------HHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGG
T ss_pred             CCCeEEEEEECCCCCCchHHHH------HHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHh
Confidence            4789999998 78999997643      22222222  3455555555544321 222                   344


Q ss_pred             CCC---------CCcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHhh
Q 019378          134 KLD---------SIPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVPF  171 (342)
Q Consensus       134 ~v~---------~~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~~  171 (342)
                      ++.         ..|+++|||+ .|.++..+.|     ..+++++++.|...
T Consensus       120 gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          120 GVLIGEGALKGILARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             TCBBCSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             CCEecccccCCceeeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence            442         2599999997 7899888765     34578888877654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=96.76  E-value=0.0089  Score=49.34  Aligned_cols=93  Identities=4%  Similarity=0.052  Sum_probs=58.8

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------HHHHHhCCCC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------KKVCTYYKLD  136 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------~~~~~~y~v~  136 (342)
                      ++++++|+|. ..||..|......+  +....++-... .++.++.++++.                   ..++..|++.
T Consensus        34 k~~~vvl~f~~~~~c~~C~~~~~~l--~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  110 (159)
T 2a4v_A           34 NNRVVVFFVYPRASTPGSTRQASGF--RDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAK  110 (159)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred             CCCeEEEEEcCCCCCCCHHHHHHHH--HHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence            3458999986 78999998643221  01111122234 555556665442                   2355678888


Q ss_pred             CCc------EEEEEeCCCCceEEEEeCCCC---hHHHHHHHHhhhhc
Q 019378          137 SIP------VVLVVDPITGQKMRSWCGMVQ---PESLLEDLVPFMDG  174 (342)
Q Consensus       137 ~~P------~l~ii~p~tG~~l~~~~G~~~---~~~~l~~L~~~l~~  174 (342)
                      ..|      +.+|| + +|.++..+.|...   .+.+++.|...++.
T Consensus       111 ~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~  155 (159)
T 2a4v_A          111 KTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK  155 (159)
T ss_dssp             SSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence            777      77888 6 7999999988643   36677777776653

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=96.73  E-value=0.011  Score=44.44  Aligned_cols=73  Identities=11%  Similarity=0.017  Sum_probs=58.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW  341 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w  341 (342)
                      +...+|.||..+|+.+.-.+..++||..|-..|.... +.+...-+|+..  .+.  |  +.+.||.++|+.+++|++..
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk~--L--~d~~tL~~~~i~g~~i~l~~   75 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHLVE   75 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCTTEEEEEEE
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--C--CCCCCHHHcCCCCcEEEEEe
Confidence            4578999999999999999999999999999998763 666777888763  332  4  45899999999656776653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.71  E-value=0.0055  Score=54.98  Aligned_cols=92  Identities=5%  Similarity=-0.020  Sum_probs=61.3

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecC------------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDD------------------------------  122 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~------------------------------  122 (342)
                      ...|..++.|.+.+|..|..|...      +..+++.   .|++..+...                              
T Consensus        95 ~~ak~~v~~F~D~~Cp~C~~~~~~------l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~  168 (241)
T 1v58_A           95 KDAPVIVYVFADPFCPYCKQFWQQ------ARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGK  168 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHH------HHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred             CCCCeEEEEEECCCChhHHHHHHH------HHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence            356888999999999999999653      4556654   2333222110                              


Q ss_pred             ---------Ch-------hHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          123 ---------TS-------EGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       123 ---------s~-------eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                               +.       ....+++.|++.++|+++|.+. +|+. .++.|..+++.|...|.....++
T Consensus       169 ~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~~-~~~~G~~~~~~L~~~l~~~~~~~  235 (241)
T 1v58_A          169 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENTL-QQAVGLPDQKTLNIIMGNKLQHH  235 (241)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTEE-EEEESSCCHHHHHHHTTC-----
T ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCCE-EEecCCCCHHHHHHHHHHHHHhh
Confidence                     11       1134567899999999999875 5754 67889999999988887777654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.014  Score=42.76  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||.++|+.+.-.+..++||..|-.-+... .+.+....+|+..  .+.  +  +.+.||.++|+. +++|.+.
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~   77 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-LNVPVRQQRLLFK--GKA--L--ADGKRLSDYSIGPNSKLNLV   77 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--C--CTTSBGGGGTCCSSBCCEEE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            456899999999998899999999999999999875 4667778888753  443  4  457999999998 5666654

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.71  E-value=0.0068  Score=57.09  Aligned_cols=111  Identities=12%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             CCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCC
Q 019378           56 RPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL  135 (342)
Q Consensus        56 ~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v  135 (342)
                      .|....+-..++....   ....++++|+|.++||.+|+.+... |  ..+.+-++..+.|..+|.+..+...+++.|++
T Consensus       116 ~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~-~--~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi  189 (361)
T 3uem_A          116 LPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSN-F--KTAAESFKGKILFIFIDSDHTDNQRILEFFGL  189 (361)
T ss_dssp             SCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHH-H--HHHHGGGTTTCEEEEECTTSGGGHHHHHHTTC
T ss_pred             CCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHH-H--HHHHHHccCceEEEEecCChHHHHHHHHHcCC
Confidence            3443334455555332   2345677899999999999988522 1  23334445567788888876678889999999


Q ss_pred             CC--CcEEEEEeCCCCceEEEEe---CCCChHHHHHHHHhhhhc
Q 019378          136 DS--IPVVLVVDPITGQKMRSWC---GMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       136 ~~--~P~l~ii~p~tG~~l~~~~---G~~~~~~~l~~L~~~l~~  174 (342)
                      ..  +|++++++.  |..+....   |..+++.+...+..+++.
T Consensus       190 ~~~~~P~~~~~~~--~~~~~ky~~~~~~~~~~~l~~fi~~~l~g  231 (361)
T 3uem_A          190 KKEECPAVRLITL--EEEMTKYKPESEELTAERITEFCHRFLEG  231 (361)
T ss_dssp             CTTTCSEEEEEEC--C--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred             CccCCccEEEEEc--CCcccccCCCccccCHHHHHHHHHHHhcC
Confidence            87  999999985  23333333   678999998888888764

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=96.69  E-value=0.012  Score=42.30  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=55.0

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.||.++|+.+.-.+..++||..|..-+.... +.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+.
T Consensus         2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~   70 (76)
T 1ndd_A            2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GKQ--M--NDEKTAADYKILGGSVLHLV   70 (76)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            688999999999999999999999999998764 667777888753  442  4  457999999998 5666654

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=96.69  E-value=0.01  Score=42.68  Aligned_cols=69  Identities=17%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+..
T Consensus         2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~-~i~~~~q~L~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~~   71 (76)
T 3a9j_A            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQRESTLHLVL   71 (76)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHH-CcCHHHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEEEE
Confidence            688999999999999999999999999998764 666778888763  442  5  448999999998 56676653

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=96.64  E-value=0.0041  Score=51.96  Aligned_cols=87  Identities=13%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHH---------------------HHHHhC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGK---------------------KVCTYY  133 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~---------------------~~~~~y  133 (342)
                      .+|+++|+|. +.||..|..-.      +.+.++.. .++.++.++.++++..                     .++..|
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~  118 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENY  118 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHH
T ss_pred             CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHh
Confidence            4788888888 67888886532      23333332 3455555555543321                     344556


Q ss_pred             CCCC------CcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHHh
Q 019378          134 KLDS------IPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLVP  170 (342)
Q Consensus       134 ~v~~------~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~~  170 (342)
                      ++..      .|+++|||+ .|.++..+.+     ..+.+++++.|..
T Consensus       119 gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          119 GVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             CCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            6643      799999997 7998887544     2345777776653

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=96.64  E-value=0.01  Score=43.79  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+.  ..+.  |  +.+.||.++|+. +++|.+.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~l~l~   73 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKWSTLFLL   73 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence            47899999999999999999999999999998864 66777788875  3443  4  457999999998 5667664

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=96.64  E-value=0.016  Score=48.85  Aligned_cols=35  Identities=17%  Similarity=0.422  Sum_probs=27.2

Q ss_pred             CCcEEEEEeCCCCceEEEEeCC--CChHHHHHHHHhhh
Q 019378          137 SIPVVLVVDPITGQKMRSWCGM--VQPESLLEDLVPFM  172 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~~~~G~--~~~~~~l~~L~~~l  172 (342)
                      ..|+++|||| .|.++..+.|.  .+.+++++.|...+
T Consensus       133 H~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          133 HGTSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CCCEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             eeeEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence            3478999998 79999999884  45688888877654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=96.59  E-value=0.0058  Score=54.87  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=60.7

Q ss_pred             cCCeEEEEEec-CCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhHH------------------------
Q 019378           77 QDKWLLVNLQS-TKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK------------------------  127 (342)
Q Consensus        77 ~~K~LlV~l~~-~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg~------------------------  127 (342)
                      .+||+||+|+. .||..|..-.      +.+.++.    ..++.++.++.++.+..                        
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el------~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~  149 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEI------IAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDL  149 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHH------HHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECT
T ss_pred             CCCEEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCc
Confidence            68999999999 9999998643      2333333    24688888888775531                        


Q ss_pred             --HHHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378          128 --KVCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP  170 (342)
Q Consensus       128 --~~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~  170 (342)
                        .++..|++.      .+|.++|||+ .|.++.++.|..    +.++++..|..
T Consensus       150 ~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          150 THQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence              244567775      6899999998 799888876633    35666666554

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=96.57  E-value=0.014  Score=44.86  Aligned_cols=78  Identities=12%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             CCeeEEEEECC---CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec---CCCCccccCCCcCCChhhcCCc-C
Q 019378          262 SLLCRVGVRLP---DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-N  334 (342)
Q Consensus       262 ~~~~~i~iRlP---~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~---fPr~~~~l~~~~~~Tl~e~gL~-~  334 (342)
                      .+.++|.|+.|   +|..+.++|..+.||..|-.-|.... |.+....+|.-.   .|.....+ .+.+.||...|+. +
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~-gip~~~q~L~~~~~~~~~~~~~L-~~d~~~L~~y~i~~G   84 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLL-KVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVENG   84 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTT-TCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCTT
T ss_pred             CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHH-CCChhHeEEEEEcCCCCceeecc-CCCcccHhhcCCCCC
Confidence            56789999986   78899999999999999999998864 666777777643   55443223 4779999999998 5


Q ss_pred             ceEEEEe
Q 019378          335 AMISVTW  341 (342)
Q Consensus       335 ~~l~v~w  341 (342)
                      .+|+|.+
T Consensus        85 ~~I~V~d   91 (97)
T 1wjn_A           85 DCLLVRW   91 (97)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEe
Confidence            7788876

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=96.57  E-value=0.016  Score=42.82  Aligned_cols=73  Identities=10%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      +...+|.||..+|+.+.-.+..++||..|-.-+...+  .+.+....+|+..  .+.  |  +.+.||.+.|+. +++|+
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~   76 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVV   76 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET--TEE--C--CTTSBGGGGCCCTTSEEE
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC--CEE--C--cCCCCHHHcCCCCCCEEE
Confidence            3468899999999999999999999999999998862  5667778888754  442  4  457999999998 56676


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      +.
T Consensus        77 l~   78 (85)
T 2wyq_A           77 VM   78 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=96.56  E-value=0.015  Score=43.36  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=57.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ....+|.|+.++|+.+.-.+..++||..|-.-+.... +.+....+|+..  .+  .|  +.+.||.+.|+. +++|.+.
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrL~~~--G~--~L--~d~~tL~~~~i~~~~~i~l~   82 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHLV   82 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEET--TE--EC--CTTSBGGGGTCCTTCEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcCHHHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEEE
Confidence            4578999999999999999999999999999998764 666777788764  33  24  448999999998 5666654

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=96.49  E-value=0.015  Score=44.74  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||..+|+.+.-....++||..|..-+... .+.+....+|+..  .+.  |  ..+.||+++|+. +++|.+.
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~-~gip~~~qrLif~--Gk~--L--~d~~tl~dy~i~~g~~I~l~   91 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-QGVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY   91 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTCEEEEE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CeE--c--CCCCCHHHCCCCCCCEEEEE
Confidence            457899999999999999999999999999999876 3667778888764  443  4  457999999998 5666654

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=96.49  E-value=0.023  Score=41.50  Aligned_cols=71  Identities=23%  Similarity=0.249  Sum_probs=57.2

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      ..+|.||.++|+.+.-....++||..|-.-+... .+.++...+|+..  .+.  +  +.+.||.++|+. +++|.+..
T Consensus         4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~l~l~~   75 (79)
T 3phx_B            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMNL   75 (79)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-cCCCHHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEEE
Confidence            4789999999999989999999999999999875 4667777888764  332  4  458999999998 56776653

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.49  E-value=0.043  Score=48.34  Aligned_cols=120  Identities=10%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             HHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH
Q 019378           48 RDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK  127 (342)
Q Consensus        48 ~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~  127 (342)
                      ...|-..-..|.  +-.-+.+.+........+++++.+.+.+|.+|..+. ..|  ..|.+-.+.++.|.-+|.+..+..
T Consensus       103 l~~fi~~~~~pl--v~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~-~~~--~~vAk~~k~~i~F~~vd~~~~~~~  177 (227)
T 4f9z_D          103 LSRFIEINSLHM--VTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM-HRY--QKAAKLFQGKILFILVDSGMKENG  177 (227)
T ss_dssp             HHHHHHHHCCCS--EEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH-HHH--HHHHHHTTTTCEEEEEETTSGGGH
T ss_pred             HHHHHHHhCCCc--eeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH-HHH--HHHHHHhhCCEEEEEeCCccHhHH
Confidence            444544444333  344455555555444446666667787887787664 223  234555556677776777766666


Q ss_pred             HHHHhCCCC--CCcEEEEEeCCCCceEEEE-eCCCChHHHHHHHHhhhh
Q 019378          128 KVCTYYKLD--SIPVVLVVDPITGQKMRSW-CGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       128 ~~~~~y~v~--~~P~l~ii~p~tG~~l~~~-~G~~~~~~~l~~L~~~l~  173 (342)
                      .+++.|++.  .+|.++|++..++. ...+ .|.++++.+..-+..+++
T Consensus       178 ~~l~~fgl~~~~~P~~~i~~~~~~~-ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          178 KVISFFKLKESQLPALAIYQTLDDE-WDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             HHHHHTTCCGGGCSEEEEEESSSCC-EEEETTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCCEEEEEECCCCc-cccCCcCCCCHHHHHHHHHHHhC
Confidence            788999997  89999999975432 2333 367888888777766654

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=96.48  E-value=0.018  Score=43.24  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=57.0

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||.++|+.+.-.+..++||..|-.-+... .+.+...-+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~~I~~g~~i~l~   74 (88)
T 2hj8_A            4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN   74 (88)
T ss_dssp             EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-TCSCTTTEEEESS--SSC--C--CTTSBHHHHHCSTTCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            5789999999999999999999999999999875 4777778888753  443  4  457999999998 5666654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=96.46  E-value=0.019  Score=47.62  Aligned_cols=87  Identities=14%  Similarity=0.034  Sum_probs=53.8

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~  132 (342)
                      .+|+++|+|. +.||..|..-..      .+.++.+  .++.++.++.++++.                     ..++..
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~------~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  114 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTR------RFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRD  114 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHH------HHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHH
T ss_pred             CCCEEEEEEECCCCCCccHHHHH------HHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHH
Confidence            5789999998 589999975321      2222222  244455544444322                     234455


Q ss_pred             CCCC----C--CcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHh
Q 019378          133 YKLD----S--IPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVP  170 (342)
Q Consensus       133 y~v~----~--~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~  170 (342)
                      |++.    .  .|+++|||+ .|.++..+.|.     .+.+++++.|..
T Consensus       115 ~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          115 YALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             HTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             hCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            6654    2  399999997 79999888763     234777776653

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=96.46  E-value=0.014  Score=51.35  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=59.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeec--------------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYD--------------------------------  121 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~--------------------------------  121 (342)
                      ..+|+.+|.|.++||..|+.+...      +.++...  .+++..+..                                
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  157 (216)
T 1eej_A           84 PQEKHVITVFTDITCGYCHKLHEQ------MADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS  157 (216)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence            467999999999999999999654      4455543  233332221                                


Q ss_pred             --------CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          122 --------DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       122 --------~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                              .-.+...+++.|++.++|+++|.+   |.   .+.|..++++|...|.....
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~  211 (216)
T 1eej_A          158 VAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK  211 (216)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence                    112334577899999999995533   54   56799999998887776543

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=96.45  E-value=0.023  Score=42.22  Aligned_cols=72  Identities=22%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||.++|+.+.-.+..++||.+|-.-+... .+.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~~~i~~g~~i~l~   77 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS   77 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-hCCChHHEEEEEC--CEE--c--cCCCCHHHCCCCCCCEEEEE
Confidence            356899999999999999999999999999999886 4667788888753  432  4  457999999998 5666665

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=96.41  E-value=0.017  Score=41.78  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=54.7

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      .+|.||. +|+.+.-.+..++||..|..-+.... +.+....+|+..  .+.  +  +.+.||++.|+. +++|.+..
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~-~i~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l~~   74 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLVK   74 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEEE
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHh-CCCHHHEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEEEE
Confidence            6788888 99999999999999999999998764 667778888753  443  4  447999999998 56676653

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=96.34  E-value=0.027  Score=42.96  Aligned_cols=69  Identities=12%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.||.++|+.+.-.+..++||.+|-.-|....  .+.+....+|+..  .+.  |  +.+.||.+.|+. +++|.+.
T Consensus         2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~g~~i~l~   73 (95)
T 1uel_A            2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM   73 (95)
T ss_dssp             EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence            688999999999999999999999999998863  4677788888753  443  5  447999999998 5666554

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=96.32  E-value=0.021  Score=43.72  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=54.9

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.||.++|+.+.-.+..++||..|-.-|... .+.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-~gi~~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~   70 (98)
T 1yx5_B            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   70 (98)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-TCCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence            68899999999999999999999999999876 4667778888754  443  5  448999999998 5666654

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=96.32  E-value=0.026  Score=42.16  Aligned_cols=73  Identities=11%  Similarity=0.012  Sum_probs=58.4

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW  341 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w  341 (342)
                      +...+|.||..+|+.+.-.+..++||..|-.-+.... +.+...-+|+..  .+  .+  +.+.||.++|+.+++|++++
T Consensus        15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~g~~i~lv~   87 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GR--VL--QDDKKLQEYNVGGKVIHLVE   87 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TE--EC--CTTSBGGGGTCTTEEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHh-CCCHHHEEEEEC--CE--EC--CCCCcHHHcCCCCcEEEEEE
Confidence            4568999999999999899999999999999998763 667777788753  33  24  44899999999667776653

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=96.29  E-value=0.0065  Score=55.15  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=58.9

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------H
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------K  128 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~  128 (342)
                      -.+||+||+|+ .+||+.|..-...+  +....+|-..++.++.++.++.+..                          .
T Consensus        89 ~kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~  166 (254)
T 3tjj_A           89 YRGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQ  166 (254)
T ss_dssp             GTTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSH
T ss_pred             HCCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHH
Confidence            46899999999 88999997643211  1111222234688888888775431                          2


Q ss_pred             HHHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          129 VCTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       129 ~~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      ++..|++.      .+|.++|||+ .|.++.++.|..    +.++++..|.
T Consensus       167 va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~  216 (254)
T 3tjj_A          167 ISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQ  216 (254)
T ss_dssp             HHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            34556663      4799999997 789888776632    4566666554

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=96.24  E-value=0.027  Score=43.78  Aligned_cols=74  Identities=12%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ......|-|+.+.|+.+.-....++||.+|-.-|... .|.+...-+|+..  .+.  |  +.+.||.+.|+. .++|.+
T Consensus        25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~~--Gk~--L--~D~~TL~dygI~~gstlhL   97 (100)
T 1uh6_A           25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-TGTRWNKIVLKKW--YTI--F--KDHVSLGDYEIHDGMNLEL   97 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CSSCBHHHHTCCTTEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEE
Confidence            3557899999999999999999999999999999886 5777778888754  553  5  558999999998 566776


Q ss_pred             Ee
Q 019378          340 TW  341 (342)
Q Consensus       340 ~w  341 (342)
                      .+
T Consensus        98 ~~   99 (100)
T 1uh6_A           98 YY   99 (100)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=96.23  E-value=0.027  Score=47.12  Aligned_cols=85  Identities=8%  Similarity=0.044  Sum_probs=60.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCC----------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDT----------------------------  123 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s----------------------------  123 (342)
                      ..+|..+|.|.+.+|..|..+..      .+.+++++    .|++..+.+..                            
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~------~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~   93 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMA------EVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMG   93 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHH------HHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCccHHHHHH------HHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence            35799999999999999999963      45666552    45555543321                            


Q ss_pred             -------------------------------------hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          124 -------------------------------------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       124 -------------------------------------~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                                                           ....+++..+++.++|+++|    +|+   .+.|..+.+.|..
T Consensus        94 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~  166 (175)
T 3gyk_A           94 MSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQD  166 (175)
T ss_dssp             CSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHH
Confidence                                                 11223567889999999986    454   5679999999988


Q ss_pred             HHHhhhh
Q 019378          167 DLVPFMD  173 (342)
Q Consensus       167 ~L~~~l~  173 (342)
                      .|...+.
T Consensus       167 ~i~~~l~  173 (175)
T 3gyk_A          167 AVDRARK  173 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8877664

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.023  Score=43.65  Aligned_cols=72  Identities=18%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~l~   92 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   92 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTCBSGGGTCCTTEEEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence            4578999999999999999999999999999998763 667777888753  442  4  558999999998 4666654

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=96.16  E-value=0.033  Score=48.22  Aligned_cols=86  Identities=15%  Similarity=0.074  Sum_probs=56.6

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH---------------------HHHH
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK---------------------KVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~---------------------~~~~  131 (342)
                      -.+|+++|+|. +.||..|..-.      +.+.++.+  .++.++.++.++.+..                     .++.
T Consensus        76 ~~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  149 (200)
T 3zrd_A           76 FAGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQ  149 (200)
T ss_dssp             GTTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred             hCCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence            35899999998 67999997643      33344333  4677777777665432                     3445


Q ss_pred             hCCCC---------CCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 019378          132 YYKLD---------SIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDL  168 (342)
Q Consensus       132 ~y~v~---------~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L  168 (342)
                      .|++.         ..|+++|||+ .|.++.++.|.     .+.+++++.|
T Consensus       150 ~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L  199 (200)
T 3zrd_A          150 AYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL  199 (200)
T ss_dssp             HTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             HhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence            56653         3699999997 79988876543     3455665544

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=96.14  E-value=0.0032  Score=58.56  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=57.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC-C-hhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD-T-SEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~-s-~eg~~~~~~y~v~~~P~l  141 (342)
                      .+..+.++....++..  +|.|+.+||..|+.+.. +|..-.      +.+-...++.. . .+...+++.|++.++|++
T Consensus       185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p-~le~lA------~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~  255 (291)
T 3kp9_A          185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQKE-LFGAAF------DQVPYVECSPNGPGTPQAQECTEAGITSYPTW  255 (291)
T ss_dssp             CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHHH-HHGGGG------GGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred             CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHHH-HHHHHH------HHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence            4555555555544444  68999999999999853 333221      22223344422 2 235678999999999996


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      .+    +|+   .+.|..+.+++.+.+
T Consensus       256 ~i----~G~---~~~G~~~~~~L~~~l  275 (291)
T 3kp9_A          256 II----NGR---TYTGVRSLEALAVAS  275 (291)
T ss_dssp             EE----TTE---EEESCCCHHHHHHHT
T ss_pred             EE----CCE---EecCCCCHHHHHHHH
Confidence            55    576   388999988876543

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=96.10  E-value=0.022  Score=42.00  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=56.2

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||.++|+.+.-.+..++||.+|-.-+.... +.+....+|+..  .+.  +  +.+.||.++|+. +++|.+.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~ip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~~~~i~l~   73 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIHNHSALYLL   73 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--BEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHH-CCCHHHEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEEEE
Confidence            46899999999999999999999999999998764 667778888864  332  4  457899999998 5667664

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=96.05  E-value=0.037  Score=40.33  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||..+|+.+.-....++||..|..-+... .+.+....+|+..  .+.  |  +.+.||+++|+. +++|.+.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-~gi~~~~qrL~~~--G~~--L--~d~~tl~~~~i~~~~~i~l~   73 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-QGVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY   73 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-HCCCcccEEEEEC--CEE--e--CCCCCHHHcCCCCCCEEEEE
Confidence            4689999999999999999999999999998876 4667777888654  543  4  457999999998 5666554

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=96.05  E-value=0.038  Score=40.10  Aligned_cols=71  Identities=21%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             eeEEEEECCCCceE-EEE-eCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRM-QRN-FLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~-~rr-F~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||.++|+.+ .-. +..++||..|-.-+... .+.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+.
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-~gip~~~qrL~~~--g~~--L--~d~~tL~~~~i~~g~~i~l~   74 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-FHVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLL   74 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEE
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence            46899999999985 677 99999999999999876 3667777888753  442  4  457999999998 5667665


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      .
T Consensus        75 ~   75 (78)
T 2faz_A           75 V   75 (78)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=95.97  E-value=0.038  Score=41.92  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .+|.||..+|+.+.-.+..++||.+|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-gip~~~qrL~~~--G~~--L--~d~~tL~~~~i~~~~~i~l~   71 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   71 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhh-CCChhHEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            4789999999999999999999999999998864 667777888753  442  4  457899999998 5666654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=95.95  E-value=0.019  Score=47.77  Aligned_cols=74  Identities=16%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~  132 (342)
                      .+|+++|+|. +.||..|..--      +.+.++..  .++.++.++.++++.                     ..++..
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  115 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSV------RKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ  115 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHH------HHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHH
Confidence            5789999998 78999997532      22222222  456666665554332                     234556


Q ss_pred             CCCCC---------CcEEEEEeCCCCceEEEEeC
Q 019378          133 YKLDS---------IPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       133 y~v~~---------~P~l~ii~p~tG~~l~~~~G  157 (342)
                      |++..         .|+.+|||+ .|.++..+.|
T Consensus       116 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~  148 (165)
T 1q98_A          116 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV  148 (165)
T ss_dssp             TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             hCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence            66632         499999997 7898888865

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=95.94  E-value=0.011  Score=55.51  Aligned_cols=87  Identities=10%  Similarity=0.186  Sum_probs=60.0

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHH-------------------HHHHhC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGK-------------------KVCTYY  133 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~-------------------~~~~~y  133 (342)
                      .|||++|||+ .++++.|..         ++..|-+   +++.+++++.++.+..                   .+++.|
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~---------e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~y   93 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTR---------EAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFF   93 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHH---------HHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCeEEEEEECCCCCCCCHH---------HHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhc
Confidence            5899999998 345555643         2222222   4678888888876653                   345678


Q ss_pred             CC----CCCcEEEEEeCCCCceEEEEeCCC---ChHHHHHHHHhhhh
Q 019378          134 KL----DSIPVVLVVDPITGQKMRSWCGMV---QPESLLEDLVPFMD  173 (342)
Q Consensus       134 ~v----~~~P~l~ii~p~tG~~l~~~~G~~---~~~~~l~~L~~~l~  173 (342)
                      ++    ..+|+.+|||+ .|.+.+.|.+.-   .++++|..|..+..
T Consensus        94 gv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~  139 (322)
T 4eo3_A           94 NVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE  139 (322)
T ss_dssp             TCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence            87    35789999998 799988888742   25777777777764

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=95.88  E-value=0.058  Score=42.39  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...+|.||.++|+.+.-.+..++||..|-.-+.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~  105 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV  105 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCTTTEEEEET--TEE--C--CSSCBTTTTTCCTTCEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHH-CcCcccEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            468999999999999999999999999999998764 667778888764  332  4  448999999998 5667664

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=95.88  E-value=0.079  Score=39.47  Aligned_cols=73  Identities=22%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             CCeeEEEEECCCC-ceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          262 SLLCRVGVRLPDG-RRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       262 ~~~~~i~iRlP~G-~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      ....+|.||.++| +.+.- .+..++||.+|-.-|... .+.+....+|+..  .+.  |  +.+.||.++|+. +++|.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-~gip~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~   77 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQ   77 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEE
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-HCcChhhEEEEEC--CeE--C--CCCCCHHHCCCCCCCEEE
Confidence            3568999999999 67888 599999999999999876 4667778888764  332  4  457999999998 56676


Q ss_pred             EEe
Q 019378          339 VTW  341 (342)
Q Consensus       339 v~w  341 (342)
                      +..
T Consensus        78 l~~   80 (89)
T 1wy8_A           78 LLV   80 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=95.85  E-value=0.061  Score=42.23  Aligned_cols=71  Identities=11%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             CeeEEEEECC---CCceEEEEeCC-CCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceE
Q 019378          263 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI  337 (342)
Q Consensus       263 ~~~~i~iRlP---~G~r~~rrF~~-~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l  337 (342)
                      +.++|.|+.|   +|+.+...+.. ++||..|-.-|... .+.+...-+|+..  .+.  +  +.+.||.+.|+. +++|
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~I~~g~~l   98 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL   98 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred             CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-HCCCHHHeEEEEC--CEE--C--CCCCcHHHCCCCCCCEE
Confidence            4589999999   89999999997 99999999999886 4667777888753  332  4  458999999998 5666


Q ss_pred             EEE
Q 019378          338 SVT  340 (342)
Q Consensus       338 ~v~  340 (342)
                      ++.
T Consensus        99 ~l~  101 (111)
T 1we6_A           99 TLS  101 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=95.78  E-value=0.052  Score=48.08  Aligned_cols=90  Identities=12%  Similarity=0.006  Sum_probs=56.9

Q ss_pred             cCCeEEEEEe-cCCCcchh-hhhhcccCCHHHHHHHhccE-EEEEeecCChhHH--------------------HHHHhC
Q 019378           77 QDKWLLVNLQ-STKEFSSH-MLNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK--------------------KVCTYY  133 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~-~f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~--------------------~~~~~y  133 (342)
                      .+||++|+|+ .+||..|. .-...+  ++...++-..++ .+++++.++.+..                    .++..|
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l--~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  109 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRY--NELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGM  109 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHH--HHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHh
Confidence            5799999998 99999998 321110  111112223467 7777777765432                    234556


Q ss_pred             CCC-----------CCcEEEEEeCCCCceEEEEeCC---------CChHHHHHHHHh
Q 019378          134 KLD-----------SIPVVLVVDPITGQKMRSWCGM---------VQPESLLEDLVP  170 (342)
Q Consensus       134 ~v~-----------~~P~l~ii~p~tG~~l~~~~G~---------~~~~~~l~~L~~  170 (342)
                      ++.           ..|+.+|| + +|.++..+.|.         .++++++..|..
T Consensus       110 gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          110 GMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             TCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             CceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence            653           35888888 6 79988888774         356777766653

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=95.77  E-value=0.069  Score=40.76  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...++|.|+-.+|+.+..+...++++..|++-+.... +.+...++|+..  .+.  +  ..+.|.+++++. +.+|.|.
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~dl~medgD~Idv~   87 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF   87 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            4578999999999999999999999999999876653 556677777654  442  3  568999999998 6777766


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      +
T Consensus        88 ~   88 (93)
T 2d07_B           88 Q   88 (93)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=95.77  E-value=0.025  Score=47.06  Aligned_cols=78  Identities=12%  Similarity=-0.058  Sum_probs=45.0

Q ss_pred             HcCCeEEEEEe-cCCCcchh--hhhhcccCCHHHHHHHhccEE-EEEeecCChhH---------------------HHHH
Q 019378           76 VQDKWLLVNLQ-STKEFSSH--MLNRDTWANEAVSQTISTNFI-FWQVYDDTSEG---------------------KKVC  130 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~--~f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg---------------------~~~~  130 (342)
                      -.+||++|+|+ +.||..|.  .+. .+  +....++-..++. ++.++.++++.                     ..++
T Consensus        33 ~~gk~vvl~f~~~~~c~~C~~~e~~-~l--~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  109 (162)
T 1tp9_A           33 VAGKKVILFGVPGAFTPTCSLKHVP-GF--IEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYT  109 (162)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHH-HH--HHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHH
T ss_pred             hCCCcEEEEEeCCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHH
Confidence            35899999999 89999998  221 10  0011111123454 55555554432                     2344


Q ss_pred             HhCCCC-----------CCcEEEEEeCCCCceEEEEeCC
Q 019378          131 TYYKLD-----------SIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus       131 ~~y~v~-----------~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      +.|++.           ..|+.+|||  .|.++..+.|.
T Consensus       110 ~~~gv~~~~~~~g~~~~~~p~~~vid--~G~i~~~~~~~  146 (162)
T 1tp9_A          110 HALGLELDLQEKGLGTRSRRFALLVD--DLKVKAANIEG  146 (162)
T ss_dssp             HHTTCEEEETTTTSEEEECCEEEEEE--TTEEEEEEECS
T ss_pred             HHcCcccccccCCCCccceeEEEEEE--CCEEEEEEeeC
Confidence            556654           268888887  68877766654

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=95.76  E-value=0.086  Score=40.92  Aligned_cols=71  Identities=18%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      +...+|.||..+|+ +.-.+..++||..|..-|.... +.+....+|+..  .+.  |  +.+.||.++|+.+ .+|+|.
T Consensus        15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~   86 (106)
T 1wx7_A           15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV   86 (106)
T ss_dssp             SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHH-TCCTTTEEEEET--TEE--C--CTTSCHHHHTCCTTEEEEEE
T ss_pred             CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence            56789999999996 6889999999999999998764 666778888754  432  4  4579999999984 556554

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=95.75  E-value=0.089  Score=42.39  Aligned_cols=71  Identities=15%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      ....+|.|+.. |+.+...+..++||..|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+.+ .+|.|.
T Consensus        30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~dygI~~gstI~lv  101 (125)
T 1j8c_A           30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHLV  101 (125)
T ss_dssp             CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEEE
T ss_pred             CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHH-CcCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            45789999988 8899999999999999999998764 666778888754  432  5  4579999999984 556554

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=95.73  E-value=0.064  Score=40.88  Aligned_cols=72  Identities=21%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      ....+|.||.++| .+.-.+..++||..|-.-|... .+.+...-+|+.  ..+.  | .|.+.||.+.|+.+ ++|.++
T Consensus        13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L-~D~~~tL~~ygI~~gstl~lv   85 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIE--L-ADDYRNLNEYGITEFSEIVVF   85 (94)
T ss_dssp             SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEE--E-CCTTSBHHHHTCCTTEEEEEE
T ss_pred             CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEE--C-CCCcccHHHCCCCCCCEEEEE
Confidence            4568999999999 7888999999999999999886 477778888874  3543  5 23339999999984 556553

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=95.72  E-value=0.046  Score=41.54  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      .+...+|.|+.. |+.+.-.+..++||..|-.-|... .+.+....+|+..  .+.  |  +.+.||.+.|+.+ ++|.+
T Consensus        14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l   85 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY-LHCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV   85 (96)
T ss_dssp             CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH-TCSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred             CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEEEC--CEE--C--CCcCCHHHCCCCCCCEEEE
Confidence            356789999998 899999999999999999999886 3666666777643  432  4  4579999999984 55655


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      .
T Consensus        86 ~   86 (96)
T 1wx8_A           86 V   86 (96)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=95.70  E-value=0.052  Score=40.70  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.||..+|+.+.-.+..++||..|-.-+.... +.+....+|+..  .+  .|  +.+.||.+.|+. +++|.+.
T Consensus         2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk--~L--~D~~tL~~~~i~~g~~l~l~   70 (88)
T 4fbj_B            2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYS--GK--QM--NDEKTAADYKILGGSVLHLV   70 (88)
T ss_dssp             EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGCEEEET--TE--EC--CTTSBTTTTTCCTTCEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChhHEEEEEC--Ce--EC--CCCCcHHHcCCCCCCEEEEE
Confidence            688999999999999999999999999998763 666777788764  33  24  458999999998 5666654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.68  E-value=0.085  Score=52.50  Aligned_cols=113  Identities=10%  Similarity=0.023  Sum_probs=72.7

Q ss_pred             ccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC
Q 019378           43 TADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD  122 (342)
Q Consensus        43 ~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~  122 (342)
                      +-.|....+-..-++|.  -....+.+.++  ...++..++.|..+||.+|..+..-+   +.+ ...+.+..+..+|.+
T Consensus        86 e~~s~~~~l~~~~~~~~--~~~~~~~~~i~--~~~~~~~i~~f~a~~C~~C~~~~~~l---~~~-a~~~~~v~~~~vd~~  157 (521)
T 1hyu_A           86 EFTSLVLALLWTGGHPS--KEAQSLLEQIR--DIDGDFEFETYYSLSCHNCPDVVQAL---NLM-AVLNPRIKHTAIDGG  157 (521)
T ss_dssp             GHHHHHHHHHHHTTCCC--CSCHHHHHHHH--HCCSCEEEEEEECTTCSSHHHHHHHH---HHH-HHHCTTEEEEEEETT
T ss_pred             hHHHHHHHHHhhcCCCC--CCCHHHHHHHH--hcCCCcceEEEECCCCcCcHHHHHHH---HHH-HhHcCceEEEEEech
Confidence            44455555444444442  22333333332  23466778899999999999985321   111 122346777777765


Q ss_pred             ChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          123 TSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       123 s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                        +...++..|++.++|+++|    +|+.+..  |..+.++++..|...
T Consensus       158 --~~~~~~~~~~i~svPt~~i----~g~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          158 --TFQNEITERNVMGVPAVFV----NGKEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             --TCHHHHHHTTCCSSSEEEE----TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred             --hhHHHHHHhCCCccCEEEE----CCEEEec--CCCCHHHHHHHHhhc
Confidence              4567899999999999976    5777644  888999998877654

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=95.59  E-value=0.18  Score=39.36  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=57.0

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...++|.|+-.+|+.+..+...+++|..|++-+.... +.+...++|+-.  .+.  +  ..+.|.+++++. +.+|.|.
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~   94 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF   94 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHH-TCCTTTSCEESS--SSB--C--CTTSCTTTTTCCTTEEEEEC
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            4578999999999999999999999999999876653 556667777643  442  3  568999999998 5777665


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      +
T Consensus        95 ~   95 (104)
T 1wz0_A           95 Q   95 (104)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.57  E-value=0.042  Score=42.52  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhc--CCcC-c
Q 019378          262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDS--GLAN-A  335 (342)
Q Consensus       262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~~-~  335 (342)
                      +..+.|.||.++|+  .+.-....++||..|-.-|...+++.++ ..-+|+..  .+.  |  +.+.||.+.  |+.+ .
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~--Gk~--L--~D~~tL~~y~~~I~~~~   94 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS--GRL--L--PDHLQLKDILRKQDEYH   94 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET--TEE--E--CTTSBTHHHHTTTCSEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC--CEE--C--CCCCCHHHHhcCCCCCC
Confidence            45689999999998  4566669999999999999986655543 67788753  443  5  457999999  9985 5


Q ss_pred             eEEE
Q 019378          336 MISV  339 (342)
Q Consensus       336 ~l~v  339 (342)
                      +|.+
T Consensus        95 tihL   98 (99)
T 2kdb_A           95 MVHL   98 (99)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5654

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=95.54  E-value=0.073  Score=42.07  Aligned_cols=71  Identities=15%  Similarity=0.206  Sum_probs=56.7

Q ss_pred             CeeEEEEECCC----------CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC
Q 019378          263 LLCRVGVRLPD----------GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL  332 (342)
Q Consensus       263 ~~~~i~iRlP~----------G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL  332 (342)
                      +.++|.|++|+          |+.+.-.+..++||..|-.-|... .+.+...-+|+..  .+.  |  +.+.||.+.|+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrL~~~--Gk~--L--~D~~tL~~y~i   96 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNM   96 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-SSCCTTTEEEEET--TEE--E--CTTSBHHHHTC
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-HCCChHHEEEEEC--CEE--C--CCCCCHHHCCC
Confidence            46899999996          778889999999999999999876 4777778888753  432  4  45799999999


Q ss_pred             c-CceEEEE
Q 019378          333 A-NAMISVT  340 (342)
Q Consensus       333 ~-~~~l~v~  340 (342)
                      . +++|.+.
T Consensus        97 ~~g~~i~lv  105 (115)
T 1we7_A           97 ASGAVIHLA  105 (115)
T ss_dssp             CSSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            8 5666654

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=95.51  E-value=0.068  Score=40.52  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=54.0

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.||..+|+.+...+..+++|..|-.-|....    ....+|+..  .+.  | .|.+.||.++|+. +.+|++.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~~--Gk~--L-~D~~~tL~~y~i~~g~~i~l~   75 (95)
T 1wia_A            5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQ--GRL--L-QDPARTLSSLNITNNCVIHCH   75 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEET--TEE--C-CCSSCBTTTTTCCTTEEEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEEC--CEE--c-cCCcCCHHHcCCCCCCEEEEE
Confidence            3468999999999999999999999999999987652    556777643  442  5 2444999999998 4566654

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=95.50  E-value=0.068  Score=40.04  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.++..+|+.+.-.+..++||.+|-.-+.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~i~l~   79 (88)
T 1sif_A            9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   79 (88)
T ss_dssp             -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CTTSBSGGGTCCTTCEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCCCcHHHcCCCCCCEEEEE
Confidence            35789999999999999999999999999998864 667778888753  443  5  448999999998 4666554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=95.49  E-value=0.028  Score=40.86  Aligned_cols=60  Identities=12%  Similarity=0.097  Sum_probs=40.8

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      ++.|+.+||..|+.+..      .+.+++++   .|.++.++.+ .+...++..|++.++|+++|    +|+.+
T Consensus         4 ~~~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~gv~~vPt~~i----~g~~~   66 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQ------AVANAIDPSKYTVEIVHLGTD-KARIAEAEKAGVKSVPALVI----DGAAF   66 (80)
T ss_dssp             EEEEEECSCHHHHHHHH------HHHHHSCTTTEEEEEEETTTC-SSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred             eEEEeCCCCCchHHHHH------HHHHHHHhcCCeEEEEEecCC-hhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence            45667899999999863      34455554   3555544432 13456778999999999876    47754

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=95.47  E-value=0.069  Score=42.01  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...+|.||..+|+.+.-++..++||..|-.-+.... +.++...+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~gs~I~l~  105 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV  105 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence            358999999999999999999999999999998864 667777888753  442  4  457899999998 5667664

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=95.46  E-value=0.093  Score=40.50  Aligned_cols=70  Identities=16%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...+|.|+.. |+.+.-.+..++||.+|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.|.
T Consensus        24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~gI~~g~~I~l~   94 (101)
T 2klc_A           24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRF-KSHTDQLVLIFA--GKI--L--KDQDTLSQHGIHDGLTVHLV   94 (101)
T ss_dssp             CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHH-TCCGGGEEEEET--TEE--E--CTTCCTGGGTCCTTCEEEEE
T ss_pred             CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHcCCCCCCEEEEE
Confidence            4689999998 8889999999999999999998763 667777888753  442  5  457999999998 4666554

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=95.46  E-value=0.091  Score=40.19  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +..+.|-|+.++|+.+.-.+..+|||..|-.-|..+ .|.++..-+|.-.  .+.  |  +.+.||+|.|+.+ .+|.+
T Consensus        19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-~Gip~~qQrLif~--Gk~--L--kD~~TL~dY~I~dgstLhL   90 (93)
T 3plu_A           19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-IGTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLEL   90 (93)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred             CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-hCCCHHHEEEEeC--CEE--c--cCcCCHHHcCCCCCCEEEE
Confidence            458999999999999999999999999999999876 4777788888764  332  4  5589999999994 55654

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=95.45  E-value=0.13  Score=39.12  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      ..++|.|+-.+|+.+..+...++++..|++-.... .|.+...++|+-.  .+.  +  +.+.|.+++|+. +.+|-|.+
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-~gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~~   76 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-QGLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVFQ   76 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-TTCCSTTEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEEE
Confidence            46889999999999999999999999999987665 3666778888754  432  3  568999999998 56676654

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=95.44  E-value=0.065  Score=47.84  Aligned_cols=93  Identities=8%  Similarity=-0.010  Sum_probs=58.3

Q ss_pred             cCC-eEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH---------------------------
Q 019378           77 QDK-WLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK---------------------------  127 (342)
Q Consensus        77 ~~K-~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~---------------------------  127 (342)
                      .+| |++|+++ .++|+.|..-...+  +....+|-..++.++++++++.+..                           
T Consensus        27 ~Gk~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~  104 (233)
T 2v2g_A           27 LGNSWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETR  104 (233)
T ss_dssp             HCSSEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTC
T ss_pred             CCCCeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChH
Confidence            355 9999998 78999987643211  0111122234677777777664421                           


Q ss_pred             HHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          128 KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       128 ~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                      .++..|++.            .+|+++|||| .|.+...+.|..    +.++++..|....
T Consensus       105 ~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          105 ELAVKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHHHHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            234556653            4799999998 789887776532    5677777666543

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=95.41  E-value=0.034  Score=43.70  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             eEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCC
Q 019378           80 WLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM  158 (342)
Q Consensus        80 ~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~  158 (342)
                      ..++.++.+||..|+.+..      -+.++..+ .+-+..+|++..  ..++..|++. +|+|+++.  +|+.+  ..|.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~------~L~~l~~e~~i~~~~vDId~d--~~l~~~ygv~-VP~l~~~~--dG~~v--~~g~   96 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIA------SLRVLQKKSWFELEVINIDGN--EHLTRLYNDR-VPVLFAVN--EDKEL--CHYF   96 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHH------HHHHHHHHSCCCCEEEETTTC--HHHHHHSTTS-CSEEEETT--TTEEE--ECSS
T ss_pred             cEEEEEeCCCChhHHHHHH------HHHHHHHhcCCeEEEEECCCC--HHHHHHhCCC-CceEEEEE--CCEEE--EecC
Confidence            4588899999999999842      22333322 356666777643  2467789986 99997653  57766  3577


Q ss_pred             CChHHHHHHH
Q 019378          159 VQPESLLEDL  168 (342)
Q Consensus       159 ~~~~~~l~~L  168 (342)
                      .+++.+...|
T Consensus        97 ~~~~~L~~~L  106 (107)
T 2fgx_A           97 LDSDVIGAYL  106 (107)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCHHHHHHHh
Confidence            8888876654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=95.41  E-value=0.076  Score=46.38  Aligned_cols=83  Identities=13%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecC---C---------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDD---T---------------------------  123 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~---s---------------------------  123 (342)
                      ..+|..+|.|.+.+|..|+.|...      +.++.+.  .+++..+.+.   +                           
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~  157 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL  157 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTT------HHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHH------HHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence            367899999999999999999753      4454443  3333222211   0                           


Q ss_pred             ----------hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          124 ----------SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       124 ----------~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                                .+...+++.|++.++|+++|.   +|+   .+.|..+++.|...|..
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHHh
Confidence                      123456788999999999883   465   46798899888776653

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=95.32  E-value=0.094  Score=40.19  Aligned_cols=76  Identities=8%  Similarity=0.022  Sum_probs=58.4

Q ss_pred             CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCcc-ccCCCcCCChhhcCCcC-ceE
Q 019378          262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATK-SLDYDSKLTFEDSGLAN-AMI  337 (342)
Q Consensus       262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~-~l~~~~~~Tl~e~gL~~-~~l  337 (342)
                      ++.++|.|+.++++  .+.+++..++||..|-.-|... .|.++..-+|+-..+.+.. .+ .+.+.||.+.|+.+ ++|
T Consensus        13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L-~~D~~tL~~Y~i~~gsti   90 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTM-DNNDAQLGYYANSDGLRL   90 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEEC-CCTTSBHHHHCCSSSCEE
T ss_pred             CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCccccee-CCCCCCHhHCCcCCCCEE
Confidence            56899999998885  7999999999999999999886 4777788888764333210 13 36689999999985 556


Q ss_pred             EE
Q 019378          338 SV  339 (342)
Q Consensus       338 ~v  339 (342)
                      .|
T Consensus        91 hl   92 (95)
T 2kjr_A           91 HV   92 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=95.29  E-value=0.16  Score=39.73  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=56.1

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +...++|.|+- +|+.+..+...+++|+.|++-+.... +.....++|+-.  .+.  +  ..+.|.+++|+. +.+|-|
T Consensus        28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~-gi~~~~~rF~Fd--G~r--l--~~~~Tp~dl~medgD~Idv   99 (106)
T 2eke_C           28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA   99 (106)
T ss_dssp             CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred             CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence            45678899999 99999999999999999999866543 656677787754  432  3  568999999998 566665


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      .
T Consensus       100 ~  100 (106)
T 2eke_C          100 H  100 (106)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=95.28  E-value=0.12  Score=39.57  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +..++|.|+-.+|+.+..+...++++..|++-+.... +.+...++|+-.  .+.  +  +.+.|.+++++. +.+|.|.
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~Fd--G~~--l--~~~~Tp~dl~medgD~Idv~   77 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVF   77 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            4568899999999999999999999999999876653 666677888654  443  4  568999999998 6777765


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      .
T Consensus        78 ~   78 (94)
T 2io1_B           78 Q   78 (94)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=95.24  E-value=0.14  Score=41.52  Aligned_cols=76  Identities=11%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCC-------------------------cccc-
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-------------------------TKSL-  319 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~-------------------------~~~l-  319 (342)
                      .|.||||||+..+-+-..+.+|..+..-|...+.-.....|.|+...|..                         ...+ 
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            59999999999999999999999999998877643334568888654422                         0011 


Q ss_pred             ------CCCcCCChhhcCCc-CceEEEEe
Q 019378          320 ------DYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       320 ------~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                            ..|.+.||.|-|+. +.+|++.+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence                  12458999999998 68888765

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=95.21  E-value=0.1  Score=40.21  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=55.6

Q ss_pred             CCCeeEEEEECCCCceEEE--EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC-c-Cce
Q 019378          261 RSLLCRVGVRLPDGRRMQR--NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL-A-NAM  336 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~r--rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL-~-~~~  336 (342)
                      .++..+|-||..+|+.+.-  .+..++||..|-.-|.....|.+...-+|+..  ++.  |  +.+.||.++|+ . +++
T Consensus        16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~--Gk~--L--~D~~tL~dy~I~~~g~t   89 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANST   89 (98)
T ss_dssp             --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET--TEE--E--CTTCBGGGSCCBTTBCE
T ss_pred             CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC--CEE--C--cCcCCHHHcCcCCCCCE
Confidence            4567899999999997655  56799999999999933346777778888864  443  5  45799999999 6 667


Q ss_pred             EEEE
Q 019378          337 ISVT  340 (342)
Q Consensus       337 l~v~  340 (342)
                      |++.
T Consensus        90 i~lm   93 (98)
T 4a20_A           90 ITVM   93 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=95.11  E-value=0.14  Score=39.44  Aligned_cols=71  Identities=18%  Similarity=0.218  Sum_probs=56.1

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +...+|.|+..+|+ ..-.+..++||..|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus        20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~   91 (100)
T 1yqb_A           20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVHLV   91 (100)
T ss_dssp             TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEEEE
T ss_pred             CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcChhhEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence            46799999999996 6889999999999999998763 666777888753  442  4  457999999998 5666654

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.09  E-value=0.12  Score=46.13  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             HHcCCeEEEEEecCC--CcchhhhhhcccCCHHHHHHHh--cc------EEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           75 SVQDKWLLVNLQSTK--EFSSHMLNRDTWANEAVSQTIS--TN------FIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        75 k~~~K~LlV~l~~~~--~~~~~~f~rdvl~~~~V~~~i~--~~------FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+-.++++|.+..+|  |..|..+.      +-+.++-+  ..      ..+..+|.+  +...++..|+|..+|++.|+
T Consensus        22 ~~~~~pv~v~~~~~~~~c~~c~~~~------~~l~ela~~~~~~~~~~~v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~   93 (243)
T 2hls_A           22 AEMVNPVEVHVFLSKSGCETCEDTL------RLMKLFEEESPTRNGGKLLKLNVYYRE--SDSDKFSEFKVERVPTVAFL   93 (243)
T ss_dssp             TTCCSCEEEEEEECSSSCTTHHHHH------HHHHHHHHHSCEETTEESEEEEEEETT--TTHHHHHHTTCCSSSEEEET
T ss_pred             HhCCCCEEEEEEeCCCCCCchHHHH------HHHHHHHHhccCCCCCceeEEEEecCC--cCHHHHHhcCCCcCCEEEEE
Confidence            345689999999998  99999873      22222222  12      445555654  34578999999999999998


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                         +|  ..++.|..+...+...+..+++
T Consensus        94 ---~g--~~~~~G~~~~~~l~~fv~~~l~  117 (243)
T 2hls_A           94 ---GG--EVRWTGIPAGEEIRALVEVIMR  117 (243)
T ss_dssp             ---TT--TEEEESCCCTTHHHHHHHHHHH
T ss_pred             ---CC--ceeEcCCCcHHHHHHHHHHHHh
Confidence               35  5567787766666666555554

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=95.07  E-value=0.097  Score=39.90  Aligned_cols=70  Identities=13%  Similarity=0.028  Sum_probs=52.8

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      .+..++|.|++ +|+.+.-.+..++||.+|-.-|... .+.+...-+|+  |..+.  +  + +.||.++|+.+ .+|++
T Consensus        14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~-tgip~~~QrL~--~~Gk~--L--d-d~tL~~~~i~~g~~i~l   84 (95)
T 1v86_A           14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-TGLPPAMQKVM--YKGLV--P--E-DKTLREIKVTSGAKIMV   84 (95)
T ss_dssp             CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-HCSCSTTCCCB--SSSBC--C--S-SSBHHHHCCCTTEEEEE
T ss_pred             CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCee--C--C-cCcHHHCCCCCCCEEEE
Confidence            34578899996 6888899999999999999999886 36666666776  55553  4  3 34999999985 55544

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.082  Score=41.20  Aligned_cols=69  Identities=12%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .+|.||..+|+.+.-.+..++||..|-.-|... .+.+...-+|+..  ++.  |  +.+.||.++|+. +++|.+.
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~~~i~~g~~i~lv   71 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-ISCEESQIKLIYS--GKV--L--QDSKTVSECGLKDGDQVVFM   71 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-TTSCGGGCEEEET--TEE--C--CTTSBTTTTTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCCChhhEEEEEC--CEE--C--CCcCCHHHcCCCCCCEEEEE
Confidence            468899999999999999999999999999875 4666677788753  442  5  448999999998 5666654

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=94.93  E-value=0.14  Score=40.45  Aligned_cols=73  Identities=21%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +..++|.|+-.+|+.+..+...++++..|++-+... .+.+...++|+-.  .+.  +  ..+.|.+++++- +.+|-|.
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek-~gi~~~~~rfiFd--G~~--L--~~~~Tp~dl~mEDgD~Idv~   96 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-QGISRNSVRFLFD--GTP--I--DETKTPEELGMEDDDVIDAM   96 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHH-HTCCSSSCEEESS--SCB--C--CSSSHHHHHHCSSEEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-hCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            457899999999999999999999999999886654 3666677777653  443  3  568999999998 5666654


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      .
T Consensus        97 ~   97 (110)
T 2k8h_A           97 V   97 (110)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=94.84  E-value=0.12  Score=42.12  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...|.|+.++|+.+...+..++||..|-.-+.... +.+....+|+.  ..+.  +  +.+.||++.|+. +++|.+.
T Consensus        76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gi~~~~qrL~~--~g~~--L--~d~~tL~~~~i~~~~~i~l~  146 (152)
T 3b08_A           76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV  146 (152)
T ss_dssp             CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEE--TTEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHh-CcChhhEEEEE--CCEE--C--CCCCCHHHcCCCCCCEEEEE
Confidence            47889999999999999999999999999998763 66778888875  3543  4  458999999998 5666654

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=94.75  E-value=0.099  Score=40.92  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=56.1

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCC---------------CcCeEEEecCCCCccccCCCcCCCh
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSE---------------MKPFRLTHAIPGATKSLDYDSKLTF  327 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~---------------~~~f~L~~~fPr~~~~l~~~~~~Tl  327 (342)
                      ...+|.|+.-+|+.+.-....++||.+|-.-|.... +.+               ...|.|+  |..+.  | .+.++||
T Consensus         6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~-~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~--L-~dD~~tL   79 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLT--SAGEK--L-TEDRKKL   79 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEE--SSSCE--E-CCSSSBH
T ss_pred             CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHh-CCCcccccCcceeeeeecceeEEEE--eCCcC--c-cCCcCCH
Confidence            458899999999999999999999999999988763 211               1468998  55664  5 3668999


Q ss_pred             hhcCCc-CceEEEE
Q 019378          328 EDSGLA-NAMISVT  340 (342)
Q Consensus       328 ~e~gL~-~~~l~v~  340 (342)
                      ++.|+. +++|+++
T Consensus        80 ~dygI~~g~~l~lv   93 (105)
T 1v2y_A           80 RDYGIRNRDEVSFI   93 (105)
T ss_dssp             HHHTCCSSEEEEEE
T ss_pred             HHcCCCCCCEEEEE
Confidence            999999 4666554

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=94.73  E-value=0.16  Score=40.07  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +..+|.++..+|+.+.-.+..++||..|-.-|... .+.+...-+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~ygI~~gstI~l~   79 (114)
T 2kdi_A            8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIWA--GKQ--L--EDGRTLSDYNIQRESTLHLV   79 (114)
T ss_dssp             CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTTTTTCCSSCEEEEE
T ss_pred             CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence            45789999999999999999999999999999876 3667778888754  442  4  458999999998 5666554

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=94.68  E-value=0.27  Score=35.31  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ++|.|+-.+|+.+..+...++++..|++-..... |.+...++|+-.  ++.  +  ..+.|.+++|+. +.+|.|
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv   70 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCCcceEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence            5788999999999999999999999998876653 666677787754  432  3  568999999998 555654

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=94.65  E-value=0.13  Score=38.77  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             eEEEEECCCCceEEEE--eCCCCchHHHHHHH-HhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCC--cCceEEE
Q 019378          265 CRVGVRLPDGRRMQRN--FLRTDPIQLLWSYC-YSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGL--ANAMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rr--F~~~~~l~~l~~fv-~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL--~~~~l~v  339 (342)
                      .+|-||.++|+++.-.  +..++||..|-.-| .. ..|.+...-+|+..  ++.  |  +.+.||.++|+  .+++|.|
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~-~~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~~~stl~v   74 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISE-EKASHISEIKLLLK--GKV--L--HDNLFLSDLKVTPANSTITV   74 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHT-TSCSSSTTEEEEET--TEE--C--CTTCBHHHHCCCGGGCEEEE
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHH-hcCCChHHEEEEEC--CEE--C--cCcCCHHHcCCCCCCCEEEE
Confidence            4788999999977766  55999999999999 55 46778888899864  443  5  55899999999  3678877


Q ss_pred             Ee
Q 019378          340 TW  341 (342)
Q Consensus       340 ~w  341 (342)
                      .+
T Consensus        75 ~~   76 (87)
T 2lxa_A           75 MI   76 (87)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=94.58  E-value=0.18  Score=42.19  Aligned_cols=90  Identities=11%  Similarity=-0.073  Sum_probs=52.6

Q ss_pred             cCCeEEEEEe-cCCCcchhh-hhhcccCCHHHHHHHhccE-EEEEeecCChhHH---------------------HHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHM-LNRDTWANEAVSQTISTNF-IFWQVYDDTSEGK---------------------KVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~-f~rdvl~~~~V~~~i~~~F-V~w~~~~~s~eg~---------------------~~~~~  132 (342)
                      .+|+++|+|. .+||..|.. -...+  ++...++-..++ .++.++.++.+..                     .+++.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~  107 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGY--VEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKA  107 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHH--HHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHH
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHH
Confidence            5788888886 899999987 21110  011112223456 6666666664421                     23445


Q ss_pred             CCCCC-----------CcEEEEEeCCCCceEEEEeCC-------CChHHHHHHHHh
Q 019378          133 YKLDS-----------IPVVLVVDPITGQKMRSWCGM-------VQPESLLEDLVP  170 (342)
Q Consensus       133 y~v~~-----------~P~l~ii~p~tG~~l~~~~G~-------~~~~~~l~~L~~  170 (342)
                      |++..           .|+.+|| + .|.++..+.|.       ..++.+++.|..
T Consensus       108 ~gv~~~~~~~~g~~~~~p~t~lI-~-~G~I~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (167)
T 2wfc_A          108 VDMELDLSAVLGNVRSKRYSLVI-E-DGVVTKVNVEPDGKGLTCSLAPNILSQLGG  161 (167)
T ss_dssp             TTCEECCHHHHSSCEECCEEEEE-E-TTEEEEEEECTTSSSSSTTSHHHHHHHHC-
T ss_pred             cCCccccccccCcccceEEEEEE-e-CCEEEEEEecCCCCcceeccHHHHHHHhcc
Confidence            55532           3888888 6 78888776652       346667666543

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=94.58  E-value=0.26  Score=37.00  Aligned_cols=72  Identities=14%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             CCeeEEEEECCCCceEEEEeCCC-----CchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-c
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRT-----DPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-A  335 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~-----~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~  335 (342)
                      +...+|.|+.+ |+.+...+..+     +||.+|-.-|... .+.+...-+|+..  .+.  | .|.++||.++|+.+ .
T Consensus         5 ~~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-~gip~~~qrL~~~--Gk~--L-~D~~~~L~~~~i~~g~   77 (92)
T 1wxv_A            5 SSGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGC   77 (92)
T ss_dssp             CSSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSE
T ss_pred             CCeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHH-HCcCHHHEEEEEC--Cee--c-CCCcccHHHCCCCCCC
Confidence            34688999984 77888899985     9999999999875 4777778888753  442  5 35688999999984 5


Q ss_pred             eEEEE
Q 019378          336 MISVT  340 (342)
Q Consensus       336 ~l~v~  340 (342)
                      +|++.
T Consensus        78 ~i~l~   82 (92)
T 1wxv_A           78 RVMLI   82 (92)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56553

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=94.58  E-value=0.33  Score=35.64  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=54.9

Q ss_pred             CCeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          262 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +..++|.|+-.+|+ .+..+...++++..|++-..... +.+...++|+-.  .+.  +  ..+.|.+++|+. +.+|.|
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-gi~~~~~rf~fd--G~~--l--~~~~Tp~~l~medgD~Idv   77 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-GLSGHKLSFFFD--GTK--L--SGKELPADLGLESGDLIEV   77 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-TCTTCCCEEEET--TEE--C--CSCCCHHHHTCCTTCEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-CCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEE
Confidence            35689999999996 89999999999999998876653 556667777653  432  3  568999999998 455554

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=94.55  E-value=0.16  Score=42.80  Aligned_cols=73  Identities=19%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .+...+|.|+..+|+.+.-+...++||..|-.-|... .+.+...-+|+..  .+.  |  +.+.||.+.|+. +++|.+
T Consensus        17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~QrL~~~--g~~--L--~d~~tL~~~~i~~~~~l~l   89 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL   89 (172)
T ss_dssp             --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTGGGTCCTTCEEEE
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEEC--Ccc--c--cccCCHhHcCCcccceeee
Confidence            3557899999999999999999999999999999885 4667777788753  432  4  558999999998 566655


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      .
T Consensus        90 ~   90 (172)
T 3u30_A           90 V   90 (172)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=94.50  E-value=0.14  Score=43.45  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=32.1

Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +..+++.++|+++|    +|+.+....|..+.+.|...|...+..
T Consensus       145 a~~~gv~gtPt~~v----ng~~~~~~~G~~~~e~l~~~i~~l~~k  185 (192)
T 3h93_A          145 AMAYQVTGVPTMVV----NGKYRFDIGSAGGPEETLKLADYLIEK  185 (192)
T ss_dssp             HHHHTCCSSSEEEE----TTTEEEEHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCeEEE----CCEEEecccccCCHHHHHHHHHHHHHH
Confidence            45778999999987    577765556888999998888777653

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=94.45  E-value=0.2  Score=44.28  Aligned_cols=91  Identities=12%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .|||+++||+ .++|+.|..=...  -++...+|-+.+..+++++.++....                          .+
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v  128 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIA--FSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL  128 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHH--HHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhH--HHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence            5899999999 7888888763211  12233444456899999999886543                          35


Q ss_pred             HHhCCC------CCCcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHh
Q 019378          130 CTYYKL------DSIPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVP  170 (342)
Q Consensus       130 ~~~y~v------~~~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~  170 (342)
                      ++.|++      ..++.+.|||| .|.+...+..    .-+.+++|..|..
T Consensus       129 ak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A          129 SRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            667776      23688999998 6776554422    1367888776653

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=94.43  E-value=0.26  Score=39.68  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA  333 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~  333 (342)
                      ...+.|.||+.+|+++.-.+..++||..|-+-|....     ++.  +....+|+..  .+.  |  +.+.||.+.|+.
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~--GK~--L--eD~~TL~~y~I~   87 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLP   87 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS--SSE--E--ESSCBTGGGCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCC
Confidence            4568999999999999999999999999999998743     233  2456778765  453  5  567999999997

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=94.41  E-value=0.37  Score=38.90  Aligned_cols=66  Identities=21%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             CeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC----CCCC--cCeEEEecCCCCccccCCCcCCChhhcCCcC
Q 019378          263 LLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE----GSEM--KPFRLTHAIPGATKSLDYDSKLTFEDSGLAN  334 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~----~~~~--~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~  334 (342)
                      +...|.||+.+|+.+ .-.|..++||..|-+-|....+    +.+.  ..-+|+.+  .+.  |  +.+.||++.++..
T Consensus        15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~--L--eD~~TLsdy~I~~   87 (126)
T 1se9_A           15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPV   87 (126)
T ss_dssp             CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCT
T ss_pred             ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeE--C--cCCCcHHHcCCCc
Confidence            578999999999988 6899999999999999976542    2222  45677764  443  4  6689999999984

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=94.39  E-value=0.19  Score=41.02  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.|+.++|+.+.-.+..++||.+|-.-+.... +.++....|+..  .+.  +  +.+.||.+.|+. +++|.+.
T Consensus         2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~L~~~--g~~--L--~d~~tL~~~~i~~~~~l~l~   70 (152)
T 3b08_A            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   70 (152)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHH-CcChHHeEEEEC--CeE--C--cCcccHHHhccCCCCeeEEE
Confidence            588999999999999999999999999998864 666777788753  442  4  458999999998 5666654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.088  Score=42.33  Aligned_cols=77  Identities=8%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCc
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIP  139 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P  139 (342)
                      ......+.+..+...++ ++| +..+||..|..+..       +.+-+.-.|..+.++.+.  ++. ..+...|++.++|
T Consensus        12 ~~~~~~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP   82 (130)
T 2cq9_A           12 LATAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVP   82 (130)
T ss_dssp             CSCCHHHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSS
T ss_pred             ccHHHHHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcC
Confidence            34556666666666665 444 67889999998742       222233466665544431  222 2477889999999


Q ss_pred             EEEEEeCCCCceE
Q 019378          140 VVLVVDPITGQKM  152 (342)
Q Consensus       140 ~l~ii~p~tG~~l  152 (342)
                      +|. +   +|+.+
T Consensus        83 ~l~-i---~G~~i   91 (130)
T 2cq9_A           83 RIF-V---NGTFI   91 (130)
T ss_dssp             EEE-E---TTEEE
T ss_pred             EEE-E---CCEEE
Confidence            984 4   46654

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=94.14  E-value=0.25  Score=36.66  Aligned_cols=70  Identities=14%  Similarity=0.113  Sum_probs=56.6

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccc-cCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKS-LDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~-l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      -.+|-|+..+|+.+.-.+..++||.+|-.-+... .|.++..-+|+..  .+  . +  +.+.||++.|+. +++|.+.
T Consensus        10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk--~lL--~D~~tL~~y~I~~gs~i~lv   81 (84)
T 2kk8_A           10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERS-QHIPVSKQTLIVD--GI--VIL--REDLTVEQCQIVPTSDIQLE   81 (84)
T ss_dssp             CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TE--ECC--CSSSBHHHHTCCTTSCEEEE
T ss_pred             ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHH-HCcChHHEEEEEC--CE--Eec--CCcCCHHHcCCCCCCEEEEE
Confidence            4689999999999999999999999999999886 4667778888753  33  2 3  558999999998 5666554

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=94.07  E-value=0.38  Score=36.13  Aligned_cols=72  Identities=14%  Similarity=0.043  Sum_probs=54.4

Q ss_pred             CeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcC-CCCCcCeEEEecCCCCccccCCCcCCChhhc--CCc-Cce
Q 019378          263 LLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDS--GLA-NAM  336 (342)
Q Consensus       263 ~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~--gL~-~~~  336 (342)
                      ...+|.||.++|+  .+.-....++||.+|-.-|....+ +.+...-+|+..  .+.  |  +.+.||.+.  |+. +.+
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~--Gk~--L--~D~~tL~~~~~~i~~~~~   79 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRHV   79 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSEE
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC--CEE--C--cCcCCHHHHhcCCCCCCE
Confidence            4589999999998  455556699999999999988642 566778888754  443  5  446899999  998 456


Q ss_pred             EEEE
Q 019378          337 ISVT  340 (342)
Q Consensus       337 l~v~  340 (342)
                      |+++
T Consensus        80 i~lv   83 (93)
T 1wgd_A           80 LHLV   83 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=94.03  E-value=0.25  Score=37.97  Aligned_cols=72  Identities=11%  Similarity=0.073  Sum_probs=54.6

Q ss_pred             CeeEEEEECCCC----ceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378          263 LLCRVGVRLPDG----RRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI  337 (342)
Q Consensus       263 ~~~~i~iRlP~G----~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l  337 (342)
                      ...+|.|+.++|    +.+.-.+..++||.+|-.-|... .+.+...-+|+..  .+.  | .|.++||.+.|+.+ .+|
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-~gip~~~qrL~~~--gk~--L-~D~~~tL~~ygI~~g~~l   79 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMV   79 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEE
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEEC--CEE--C-CCCcccHHHCCCCCCCEE
Confidence            457899999866    57888899999999999999886 4666777778754  332  5 35568999999984 556


Q ss_pred             EEE
Q 019378          338 SVT  340 (342)
Q Consensus       338 ~v~  340 (342)
                      +|.
T Consensus        80 ~l~   82 (102)
T 1v5o_A           80 VLL   82 (102)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            553

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=94.02  E-value=0.22  Score=42.16  Aligned_cols=76  Identities=9%  Similarity=-0.150  Sum_probs=42.5

Q ss_pred             cCCeEEEEEe-cCCCcchhh--hhhcccCCHHHHHHHhccEEEEE-eecCChhHH---------------------HHHH
Q 019378           77 QDKWLLVNLQ-STKEFSSHM--LNRDTWANEAVSQTISTNFIFWQ-VYDDTSEGK---------------------KVCT  131 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV~w~-~~~~s~eg~---------------------~~~~  131 (342)
                      .+||++|+++ .+||+.|..  ++. +  .+...+|-..++.+++ ++.++.+..                     .+++
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~-l--~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~  118 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPG-F--VEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGK  118 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHH-H--HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHH
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHH-H--HHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHH
Confidence            4677766655 889999983  431 0  0111122233455554 555554332                     2344


Q ss_pred             hCCCC-------------CCcEEEEEeCCCCceEEEEeC
Q 019378          132 YYKLD-------------SIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       132 ~y~v~-------------~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      .|++.             ..|+.+|||  .|.+...+.|
T Consensus       119 ~yGv~~~~~~~~~~g~~~~~r~tfvID--dG~I~~~~v~  155 (173)
T 3mng_A          119 ETDLLLDDSLVSIFGNRRLKRFSMVVQ--DGIVKALNVE  155 (173)
T ss_dssp             HHTCBCCSTTHHHHSSCCBCCEEEEEE--TTEEEEEEEC
T ss_pred             HhCCCcccccccccCCcceEEEEEEEE--CCEEEEEEEe
Confidence            55553             348888888  6887777665

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=93.99  E-value=0.35  Score=40.03  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...|.||.++|+.+.-....++||.+|-.-+... .+.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+.
T Consensus        81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--G~~--L--~d~~tL~~y~i~~g~~l~l~  151 (159)
T 3rt3_B           81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-EGVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFMN  151 (159)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-HCCCHHHEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence            4789999999999999999999999999999875 4777788888864  332  4  458999999998 5667664

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=93.99  E-value=0.23  Score=36.85  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ..+.+. .+|+.+.-.+..++||.+|-.-+.... +.++..-+|+..  .+.  |  +.+.||.++|+.+ ++|.+
T Consensus        13 ~~~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~qrL~~~--Gk~--L--~D~~tL~~~gi~~g~~l~l   80 (85)
T 2kd0_A           13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPIT-NVLPRGQKLIFK--GKV--L--VETSTLKQSDVGSGAKLML   80 (85)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCEEEET--TEE--C--CTTCBTTTTTCCTTEEEEE
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHH-CcChHHEEEEEC--CeE--C--CCcCCHHHCCCCCCCEEEE
Confidence            444444 488888899999999999999998763 667778888743  442  4  4579999999985 55554

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=93.96  E-value=0.51  Score=41.49  Aligned_cols=92  Identities=11%  Similarity=0.068  Sum_probs=56.0

Q ss_pred             CC-eEEEEE-ecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH----------------------------
Q 019378           78 DK-WLLVNL-QSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK----------------------------  127 (342)
Q Consensus        78 ~K-~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~----------------------------  127 (342)
                      +| |++|++ ..++|+.|..-...+  +....+|-+.++.++++++++.+..                            
T Consensus        30 Gk~~vvL~~~~a~~cp~C~~el~~l--~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~  107 (224)
T 1prx_A           30 GDSWGILFSHPRDFTPVCTTELGRA--AKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN  107 (224)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHH--HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT
T ss_pred             CCCeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCc
Confidence            44 655554 578999887542211  1111122234677777777765421                            


Q ss_pred             -HHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHhhh
Q 019378          128 -KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVPFM  172 (342)
Q Consensus       128 -~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~~l  172 (342)
                       .+++.|++.            .+|+++|||| .|.+...+.|..    +.++++..|....
T Consensus       108 ~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          108 RELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hHHHHHhCCCCcccccCCCccccceEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence             234566652            4799999998 789888876633    5678877666544

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=93.68  E-value=0.3  Score=37.92  Aligned_cols=72  Identities=17%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             CeeEEEEECCCC---ceEEEEeCC---------CCchHHHHHHHHhhcC-CCCCcC-eEEEecCCCCccccCCCcCCChh
Q 019378          263 LLCRVGVRLPDG---RRMQRNFLR---------TDPIQLLWSYCYSQLE-GSEMKP-FRLTHAIPGATKSLDYDSKLTFE  328 (342)
Q Consensus       263 ~~~~i~iRlP~G---~r~~rrF~~---------~~~l~~l~~fv~~~~~-~~~~~~-f~L~~~fPr~~~~l~~~~~~Tl~  328 (342)
                      ...+|.||..+|   +.+.-.|..         ++||..|-.-|....+ +.+... .+|+..  .+.  |  +.+.||.
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~--Gk~--L--~D~~tL~   84 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC--GRK--L--KDDQTLD   84 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET--TEE--C--CTTCBHH
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC--CeE--C--CCCCcHH
Confidence            357899999999   778888766         6999999999988642 666777 788743  443  5  4579999


Q ss_pred             hcCCc-CceEEEE
Q 019378          329 DSGLA-NAMISVT  340 (342)
Q Consensus       329 e~gL~-~~~l~v~  340 (342)
                      ++|+. +.+|++.
T Consensus        85 ~y~i~~g~~i~lv   97 (107)
T 1x1m_A           85 FYGIQPGSTVHVL   97 (107)
T ss_dssp             HHTCCTTCEEEEE
T ss_pred             HcCCCCCCEEEEE
Confidence            99998 5666554

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=93.62  E-value=0.55  Score=37.28  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc-----CCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCc-
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL-----EGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-  333 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~-----~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-  333 (342)
                      .+.+.|.||+.+|+++.-.+..++||..|-+-|....     ++.  +....+|+..  .+.  |  +.+.||.++++. 
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~--L--eD~~TL~~y~I~~   87 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLPF   87 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCCS
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcC--C--CCCCcHHHcCCCC
Confidence            3468999999999999999999999999999998742     232  3567788765  443  5  568999999986 


Q ss_pred             C--ceEEEE
Q 019378          334 N--AMISVT  340 (342)
Q Consensus       334 ~--~~l~v~  340 (342)
                      +  .+|+++
T Consensus        88 ~~~~tlhLv   96 (116)
T 1wgh_A           88 GKTTVMHLV   96 (116)
T ss_dssp             SCEEEEEEE
T ss_pred             CCceEEEEE
Confidence            3  345443

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=93.55  E-value=0.35  Score=39.95  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC-CCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .+|.|+..+|+.+.-.+..++||.+|-.-|.... +.++..-+|+. | ..+.  |  +.+.||.+.|+. +++|.+.
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gip~~~QrL~~-~~~g~~--L--~d~~tL~~y~i~~~~~l~l~   74 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAV-HPSGVA--L--QDRVPLASQGLGPGSTVLLV   74 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHH-CCCGGGEEEEE-ETTCCB--C--CTTSCGGGGTCCTTCEEEEE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHh-CCCHHHEEEEE-cCCCCC--C--CCCCCHHHcCCCCCCEEEEE
Confidence            4788999999999999999999999999998864 66777778872 3 3443  4  668999999998 5666543

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=92.54  E-value=0.014  Score=42.27  Aligned_cols=67  Identities=21%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +|.||.++|+.+.-.+..++||.+|-.-+... .+.+.....|+..  .+.  +  +.+.||.+.|+. +++|.+
T Consensus         2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~~--gk~--L--~d~~tL~~~~i~~g~~i~l   69 (76)
T 3b1l_X            2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-QGVPADQLRVIFA--GKE--L--PNHLTVQNCDLEQQSIVHI   69 (76)
Confidence            57889999998888999999999999998875 3556666777543  442  4  457999999998 455554

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=93.42  E-value=0.037  Score=45.90  Aligned_cols=43  Identities=14%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          127 KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      ..+++.|+|.++|+++| .  +|+   .+.|..+++.|...|......+
T Consensus        99 ~~la~~~gI~gtPt~vi-~--nG~---~i~G~~~~~~l~~~i~~~~~~~  141 (147)
T 3gv1_A           99 TSLGEQFGFNGTPTLVF-P--NGR---TQSGYSPMPQLEEIIRKNQQEG  141 (147)
T ss_dssp             HHHHHHTTCCSSCEEEC-T--TSC---EEESCCCTTHHHHHHHHTSCC-
T ss_pred             HHHHHHhCCCccCEEEE-E--CCE---EeeCCCCHHHHHHHHHHHHHhc
Confidence            34567899999999998 2  566   4789999999999888887754

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=93.29  E-value=0.37  Score=36.32  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||.  |+.+.-.+..++||..|-.-|... .+.+....+|+..  .+.  |  +.+.||.+.|+. +++|.+.
T Consensus        19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~lv   87 (93)
T 2l7r_A           19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASL-EGIAPEDQVVLLA--GAP--L--EDEATLGQCGVEALTTLEVA   87 (93)
T ss_dssp             -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHH-HTCCGGGCEEEET--TEE--C--CTTSBHHHHTCCSSCEEEEE
T ss_pred             cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHH-hCcChhHEEEEEC--CEE--C--CCCCcHHHCCCCCCCEEEEE
Confidence            46777787  888889999999999999999876 3667777888754  442  4  458999999998 5666654

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=93.20  E-value=0.39  Score=42.47  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .|||++|||+ .++++-|..=..+  -++...+|-+.+..+++++.++....                          .+
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~--f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v  132 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIA--FSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNI  132 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHH--HHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhh--HHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHH
Confidence            5899999999 5677777553211  12233445556999999999986543                          34


Q ss_pred             HHhCCC----CC--CcEEEEEeCCCCceEEEEeC----CCChHHHHHHHHh
Q 019378          130 CTYYKL----DS--IPVVLVVDPITGQKMRSWCG----MVQPESLLEDLVP  170 (342)
Q Consensus       130 ~~~y~v----~~--~P~l~ii~p~tG~~l~~~~G----~~~~~~~l~~L~~  170 (342)
                      ++.|++    ..  +-.+.|||| .|.+...+..    .-..+++|..|..
T Consensus       133 a~~yGv~~~~~g~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EvLr~l~a  182 (219)
T 3tue_A          133 ARSYGVLEESQGVAYRGLFIIDP-HGMLRQITVNDMPVGRSVEEVLRLLEA  182 (219)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHcCCcccCCCeeEEEEEEECC-CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            567776    22  347889998 6777665532    1357788776653

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=93.17  E-value=0.47  Score=40.10  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=55.2

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.||..+|+.+.-....++||.+|-.-+... .+.++..-+|+..  .+.  |  +.+.||.+.|+. +++|++.
T Consensus         2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~y~I~~gstI~Lv   70 (169)
T 3l0w_B            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV   70 (169)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-HCCCTTTEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHEEEEEC--Ccc--c--cCcCcHHHcCCCCCCEEEEE
Confidence            68899999999999999999999999999876 3677778888864  332  4  458999999998 5667654

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=93.13  E-value=0.33  Score=36.76  Aligned_cols=67  Identities=19%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .|-|..|||+|.+-+...+.++.+|..=+-.++ ++++..|.|...  ++.  +  |.+..|.=.||. |+.|-+
T Consensus        11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~-gl~~~~~~Lkh~--~k~--l--DLSlpfRlsgLpnnAkLEL   78 (90)
T 2al3_A           11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RTV--L--DLSLQWRFANLPNNAKLEM   78 (90)
T ss_dssp             CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TEE--E--SSSCBHHHHCCCSSCEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHh-CCChhhCeEEeC--CEe--c--cccceeEecCCCCCCEEEE
Confidence            799999999999999999999999877655553 677889999976  442  4  889999999999 566644

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.08  E-value=0.66  Score=36.91  Aligned_cols=71  Identities=20%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             CeeEEEEE-CCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          263 LLCRVGVR-LPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       263 ~~~~i~iR-lP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..++|.|. .|+|.+++-.|..+.+|.+|-+-+...+ +.+...-+|+.+  .+.  |  ..+.||.+.|+. +.+|+++
T Consensus        14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-~iP~e~qrLIy~--GKi--L--KD~eTL~~~gIk~g~TIhLv   86 (118)
T 2daf_A           14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-GIPHSVLQIRYS--GKI--L--KNNETLVQHGVKPQEIVQVE   86 (118)
T ss_dssp             SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-TCCTTTEEEEET--TEE--E--CSSCCHHHHSCCSSCEEEEE
T ss_pred             ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-CCChHHEEEEEC--CeE--c--CCcchHHHcCCCCCCEEEEE
Confidence            45778887 8999999999999999999999998875 567777788765  553  5  458899999997 6777654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=92.98  E-value=0.41  Score=40.83  Aligned_cols=76  Identities=9%  Similarity=-0.002  Sum_probs=44.6

Q ss_pred             cCCeEEE-EEecCCCcchhh--hhhcccCCHHHHHHHhccEE-EEEeecCChhHH---------------------HHHH
Q 019378           77 QDKWLLV-NLQSTKEFSSHM--LNRDTWANEAVSQTISTNFI-FWQVYDDTSEGK---------------------KVCT  131 (342)
Q Consensus        77 ~~K~LlV-~l~~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg~---------------------~~~~  131 (342)
                      .+|+++| ++..+||..|..  +.. +  ++...+|-..++. +++++.++++..                     .+++
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~-l--~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~  131 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPG-Y--LENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTK  131 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHH-H--HHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHH
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHH-H--HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHH
Confidence            4676554 455899999987  321 0  0111222234566 777777765432                     2344


Q ss_pred             hCCCC-----------CCcEEEEEeCCCCceEEEEeC
Q 019378          132 YYKLD-----------SIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       132 ~y~v~-----------~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      .|++.           ..|+.+||+  .|.+...+.|
T Consensus       132 ~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~  166 (184)
T 3uma_A          132 AIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIE  166 (184)
T ss_dssp             HTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEEC
T ss_pred             HcCCceeccccCCcccceeEEEEEC--CCEEEEEEEe
Confidence            55553           357788884  7888877765

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=92.85  E-value=0.36  Score=40.88  Aligned_cols=22  Identities=5%  Similarity=-0.056  Sum_probs=19.1

Q ss_pred             cCCeEEEEEecCCCcchhhhhh
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNR   98 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~r   98 (342)
                      .+|+.+|.|.+.+|..|..+..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~   45 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEP   45 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHH
T ss_pred             CCCeEEEEEECCCCccHHHhhH
Confidence            4788999999999999999864

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=92.68  E-value=0.26  Score=37.63  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             CCeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          262 SLLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ....+|.|+. .|+.+ .-.+..++||.+|-.-|... .+.+...-+|+  |..+.  |. | + ||.++|+.+ .+|++
T Consensus         5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-tgip~~~QkLi--~~Gk~--L~-D-~-tL~~~~I~~g~~i~l   75 (96)
T 1wgg_A            5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVM--VKGGT--LK-D-D-DWGNIKMKNGMTVLM   75 (96)
T ss_dssp             CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCE--ETTEE--CC-S-S-CCCSCCCCSSCEEEC
T ss_pred             CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-HCcCHHHeEEE--ECCcC--CC-C-C-CHHHCCCCCCCEEEE
Confidence            3567888886 67778 48899999999999999885 57777777777  45553  53 3 4 999999984 55554

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=92.67  E-value=1.1  Score=34.36  Aligned_cols=76  Identities=7%  Similarity=0.018  Sum_probs=57.1

Q ss_pred             CCeeEEEEECCCCc--eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC--CCCccccCCCcCCChhhcCCcC-ce
Q 019378          262 SLLCRVGVRLPDGR--RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI--PGATKSLDYDSKLTFEDSGLAN-AM  336 (342)
Q Consensus       262 ~~~~~i~iRlP~G~--r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f--Pr~~~~l~~~~~~Tl~e~gL~~-~~  336 (342)
                      ++.++|.|..++.+  .+.++|..++||..|-.-|... .|.++..-+|+-.=  ++....+ .+.++||.+.|+.+ ++
T Consensus        12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L-~~D~~tL~~Y~I~~g~~   89 (97)
T 2kj6_A           12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVL-SDDSRPLGFFSPFDGFR   89 (97)
T ss_dssp             CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCS-SGGGSCHHHHCCCSCCE
T ss_pred             CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCccccee-cCCcCCHHHCCCCCCCE
Confidence            56899999987774  7999999999999999999886 47778888887531  1211012 36689999999984 55


Q ss_pred             EEE
Q 019378          337 ISV  339 (342)
Q Consensus       337 l~v  339 (342)
                      |.|
T Consensus        90 Ihl   92 (97)
T 2kj6_A           90 LHI   92 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.65  E-value=0.64  Score=34.71  Aligned_cols=68  Identities=15%  Similarity=0.059  Sum_probs=56.4

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA  333 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~  333 (342)
                      +.++++.|-+|--...+-|-...-+|+.|+--|-.+- ++++..+.|....=..   ...|.++||.|+||.
T Consensus         8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kc-efdp~~~~Ll~d~~~~---e~LdLskSLndlgir   75 (91)
T 2daj_A            8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKC-EFDPLHTLLLKDYQSQ---EPLDLTKSLNDLGLR   75 (91)
T ss_dssp             CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHT-TCCTTSEEEESCSSCC---CBCCTTSCHHHHTCS
T ss_pred             ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcc-cCChhhEEEecCCCCC---cccchhcchhhhhhh
Confidence            4789999999999999999999999999999876653 6778899998753332   234899999999997

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=92.62  E-value=0.27  Score=35.46  Aligned_cols=73  Identities=10%  Similarity=0.064  Sum_probs=44.7

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChh--HHHHHHhCC--CCCCcEEEEEeCCCCceEEEE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSE--GKKVCTYYK--LDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~e--g~~~~~~y~--v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ++.++.+||..|+.+.. +     +.++..  .++-+..+|++...  ...++..|+  +.++|++. +   +|+.+   
T Consensus         3 v~~f~~~~C~~C~~~~~-~-----l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~-~---~g~~i---   69 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKD-L-----AEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF-V---DQQHI---   69 (85)
T ss_dssp             EEEECCTTSTHHHHHHH-H-----HHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE-E---TTEEE---
T ss_pred             EEEEeCCCCCCHHHHHH-H-----HHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEE-E---CCEEE---
Confidence            56778899999999852 2     222221  35666666664322  246888898  89999984 4   46654   


Q ss_pred             eCCCChHHHHHHHHh
Q 019378          156 CGMVQPESLLEDLVP  170 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~  170 (342)
                      .|.   +++...+..
T Consensus        70 ~~~---~~l~~~~~~   81 (85)
T 1ego_A           70 GGY---TDFAAWVKE   81 (85)
T ss_dssp             ESS---HHHHHHHHH
T ss_pred             ECH---HHHHHHHHH
Confidence            343   455554443

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=92.56  E-value=0.35  Score=41.79  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..+|.||..+|+.+.-....++||.+|-.-|.... +.+....+|+.  -.+.  |  +.+.||.+.|+. +++|.+.
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~-gIp~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstI~Lv  175 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE-GIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV  175 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHH-CCCGGGCCEEE--TTEE--C--CTTCBGGGGTCCTTCEEEEC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhcc-CCCHHHEEEEE--CCEE--C--CCCCCHHHCCCCCCCEEEEE
Confidence            36899999999999999999999999999998763 66667777874  3443  5  448999999998 5666653

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=92.28  E-value=0.19  Score=38.80  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=52.6

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      .++|.|+. +|+.+.-.+..++||..|-.-|.... +.+...-+|+..  .+.  |  +.+.||.++|+.+ ++|.+.
T Consensus        28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~-gip~~~QrLi~~--Gk~--L--~D~~tL~~~gI~~g~tI~lv   97 (101)
T 3m63_B           28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLV   97 (101)
T ss_dssp             -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHH-SCCSTTCCEEET--TEE--C--CTTSBTTTTTCCTTEEEEEC
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHH-CcChHHEEEEEC--CEE--C--CCcCcHHHCCCCCCCEEEEE
Confidence            46788886 88888889999999999999998864 666667777753  332  4  4589999999984 556553

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=92.14  E-value=1.2  Score=35.31  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...++|.|+-.||+.+..+...++++..|++...... +.+...++|+-.  ...  +  +.+.|.+++|+- +.+|-|.
T Consensus        38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~-Gl~~~~irFlFD--G~r--I--~~~~TP~dL~MEDgD~IdV~  110 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEVY  110 (115)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHH-TCCTTSEEEEET--TEE--C--CTTCCTTTTTCCTTCEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHh-CCChhhEEEEEC--CeE--C--CCCCCHHHcCCCCCCEEEEE
Confidence            4588999999999999999999999999998755543 666777887654  432  3  568999999998 5666543

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=91.82  E-value=0.71  Score=34.52  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=52.6

Q ss_pred             CeeEEEEECCCCceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-CCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          263 LLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ...+|.|+. +|+.+.- ....++||.+|-.-|... .+.+...-+|+-. |=.+  .+  +.+.||.++|+.+ .+|++
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~~Gk--~L--~D~~~L~~~~i~~g~~l~l   79 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGK--PA--ENDVKLGALKLKPNTKIMM   79 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTE--EC--CTTSBHHHHTCCTTEEEEE
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-HCcCHHHeEEEeeccCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence            357788886 7887777 778999999999999885 5777788888732 2233  24  4479999999984 55554

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=91.40  E-value=0.58  Score=41.01  Aligned_cols=89  Identities=8%  Similarity=0.075  Sum_probs=54.8

Q ss_pred             cCC-eEEEEE-ecCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhH------------------------
Q 019378           77 QDK-WLLVNL-QSTKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEG------------------------  126 (342)
Q Consensus        77 ~~K-~LlV~l-~~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg------------------------  126 (342)
                      .+| |++|++ ..++|+.|..-.      +.+.++.    ..++.++++++++.+.                        
T Consensus        29 ~Gk~~vvL~f~~a~~cp~C~~el------~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D  102 (220)
T 1xcc_A           29 IENSWAILFSHPNDFTPVCTTEL------AELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCD  102 (220)
T ss_dssp             TTTSEEEEECCSCTTCHHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEEC
T ss_pred             cCCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEEC
Confidence            355 666655 467888886532      2222222    3467777777766432                        


Q ss_pred             --HHHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhhh
Q 019378          127 --KKVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM  172 (342)
Q Consensus       127 --~~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~l  172 (342)
                        ..+++.|++.            .+|+++|||| .|.+...+.|.    .+.++++..|....
T Consensus       103 ~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          103 ESRELANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             TTSHHHHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             chhHHHHHhCCCCcccccCCCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence              1234566662            3799999998 78988777653    35778877666543

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=91.30  E-value=0.96  Score=42.02  Aligned_cols=72  Identities=18%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ++..+|.||..+|+.+.-.+..++||.+|-.-|... .+.+...-+|+..  .+.  |  +.+.||.+.|+. +++|.+.
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~-~GIp~~~QRLi~~--Gk~--L--~D~~TLsdygI~~gstL~Lv  303 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV  303 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-HCCCGGGCEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-HCcChHHEEEEeC--Cee--c--CCCCCHHHcCCCCCCEEEEE
Confidence            356899999999999999999999999999999876 3666777788754  442  4  458999999998 5666654

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=91.24  E-value=0.41  Score=42.14  Aligned_cols=70  Identities=17%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             ECCCC-ceEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          270 RLPDG-RRMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       270 RlP~G-~r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +.++. ..++..|.+.+|+..|+..+...+ +.+. ..++|-.-+....+.+..+.++||+|++|. +..|+|+
T Consensus       134 ~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE  206 (217)
T 4a3p_A          134 ENGNMNNVVTRRFSKADTIDTIEKEIRKIF-SIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE  206 (217)
T ss_dssp             ETTEEEEEEEEEECTTSBHHHHHHHHHHHT-TCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred             ecCCCCcceEEEEcccchHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence            34443 347799999999999999998875 4444 478887655444455556788999999998 6677775

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=91.17  E-value=1.2  Score=38.74  Aligned_cols=71  Identities=20%  Similarity=0.269  Sum_probs=54.9

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...++|.|+. +|+.+..+...++++..|+...... .|.+...++|.-.  ++.  +  ..+.|.+++|+- +.+|-|.
T Consensus        27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er-~Gi~~~~~RF~Fd--G~r--I--~~~~TP~dL~MEdgD~Idv~   98 (200)
T 3pge_A           27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEAH   98 (200)
T ss_dssp             CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHH-HSSCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEE
T ss_pred             CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHH-hCCChhhEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            5678999986 9999999999999999999765443 3667777887654  443  3  568999999998 5666554

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=90.79  E-value=1.4  Score=32.79  Aligned_cols=72  Identities=8%  Similarity=0.044  Sum_probs=51.6

Q ss_pred             eeEEEEECC--CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-----CCCCccccCCCcCCChhhcCCc-Cc
Q 019378          264 LCRVGVRLP--DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-----IPGATKSLDYDSKLTFEDSGLA-NA  335 (342)
Q Consensus       264 ~~~i~iRlP--~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-----fPr~~~~l~~~~~~Tl~e~gL~-~~  335 (342)
                      +++|.|...  +++...+||..++||..|-+-|... .|.++..-+|+-.     |..+   + .+.+.||.+.|+. +.
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~---~-l~d~~tL~~Y~i~~g~   76 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEK---N-MANDKQLGYYQCRDEF   76 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEES---S-CCTTSBGGGGTCCTTC
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceee---E-cCCCCCHHHCCCCCCC
Confidence            456666632  3344689999999999999999875 5777777777632     2222   2 4678999999998 56


Q ss_pred             eEEEE
Q 019378          336 MISVT  340 (342)
Q Consensus       336 ~l~v~  340 (342)
                      +|+|+
T Consensus        77 ~ihlv   81 (86)
T 4b6w_A           77 VIHVV   81 (86)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            67654

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=90.60  E-value=0.93  Score=40.26  Aligned_cols=64  Identities=16%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             eEEEEeCCCCchHHHHHHHHhhcCCCCC-cCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          276 RMQRNFLRTDPIQLLWSYCYSQLEGSEM-KPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       276 r~~rrF~~~~~l~~l~~fv~~~~~~~~~-~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .++.+|.+.+|+..|+..+...+ +.+. ..++|-.-+-...+.+..+.++||+|++|. +..|+++
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~-~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE  218 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLF-NIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE  218 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHT-TCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred             eEEEEecccCcHHHHHHHHHHHh-CCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence            35699999999999999998865 4444 379998755444445556788999999999 5666664

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=90.53  E-value=0.63  Score=44.39  Aligned_cols=69  Identities=7%  Similarity=0.144  Sum_probs=54.7

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhc--CCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQL--EGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI  337 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~--~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l  337 (342)
                      ...+|.||..+|+.+.-.+..++||.+|-.-|....  .+.+...-+|+.  -.+.  |  +.++||.++|+.+ ++|
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~--L--~D~~tL~dygI~~gstI   77 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKI--L--SDDVPIRDYRIDEKNFV   77 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSE--E--CSSSBTTTTCCCTTSCE
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCee--c--CCcCCHHHcCCCCCCEE
Confidence            467899999999999999999999999999998742  356667778874  3553  5  4479999999984 555

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=90.52  E-value=0.9  Score=38.08  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=56.0

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ...|.|+..+|+.+.-++..++||..|-.-|... .+.+....+|+..  .+.  +  +.+.||.+.|+. +++|.+.
T Consensus        96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~q~L~~~--g~~--L--~D~~tL~~y~i~~g~tl~l~  166 (172)
T 3u30_A           96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHLV  166 (172)
T ss_dssp             CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH-HCCCGGGCCEEET--TEE--C--CTTSBSGGGTCCTTCEEEEC
T ss_pred             cccceeecccCcceeEEecCCCCHHHHHHHHHHH-hCCCceeEEEEEC--Ccc--C--CCCCcHHHhCCCCCCEEEEE
Confidence            4678889999999999999999999999999886 3677778888754  432  4  458899999998 5666653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=90.51  E-value=1.8  Score=36.32  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=29.7

Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++..++|.++|+++ |+   |+.+  +.|..+.+.|...|...+..
T Consensus       142 ~a~~~gv~gtPt~v-in---g~~~--~~g~~~~~~l~~~i~~~l~~  181 (195)
T 2znm_A          142 LTEQYRIDSTPTVI-VG---GKYR--VIFNNGFDGGVHTIKELVAK  181 (195)
T ss_dssp             HHHHTTCCSSSEEE-ET---TTEE--ECCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCeEE-EC---CEEE--EcCCCCHHHHHHHHHHHHHH
Confidence            45688999999954 43   6643  56777888888888887764

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=90.34  E-value=0.99  Score=34.95  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             eEEEEECCCCceEEEEeC-CCCchHHHHHHHHhhcCCCCCcCeEEE-ecCC------CCccccC--CCcCCChhhcCCcC
Q 019378          265 CRVGVRLPDGRRMQRNFL-RTDPIQLLWSYCYSQLEGSEMKPFRLT-HAIP------GATKSLD--YDSKLTFEDSGLAN  334 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~-~~~~l~~l~~fv~~~~~~~~~~~f~L~-~~fP------r~~~~l~--~~~~~Tl~e~gL~~  334 (342)
                      ..|+||-++|+. .-... .+++|..|..-|.... +.+....+|. .+.|      .....+.  .+.+.||.+.||.+
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~-gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHh-CcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            579999999974 34566 8899999999998864 5566666664 2221      1000121  36789999999985


Q ss_pred             -ceEEEE
Q 019378          335 -AMISVT  340 (342)
Q Consensus       335 -~~l~v~  340 (342)
                       .+|+|+
T Consensus        86 G~~L~l~   92 (107)
T 1wf9_A           86 GSMVYLA   92 (107)
T ss_dssp             TCEEECC
T ss_pred             CCEEEEE
Confidence             555553

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=90.31  E-value=0.77  Score=37.65  Aligned_cols=75  Identities=8%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCcEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVV  141 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l  141 (342)
                      .+..+.+..+...++ ++| +..+||..|..+..       +.+-+.-.|..+.++.+.  ++. ..++..|++.++|+|
T Consensus        36 ~~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i  106 (146)
T 2ht9_A           36 TAPVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI  106 (146)
T ss_dssp             TCCHHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             hHHHHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE
Confidence            345566666666664 444 67899999998742       222233466666555441  222 247788999999998


Q ss_pred             EEEeCCCCceE
Q 019378          142 LVVDPITGQKM  152 (342)
Q Consensus       142 ~ii~p~tG~~l  152 (342)
                      . +   +|+.+
T Consensus       107 f-i---~G~~i  113 (146)
T 2ht9_A          107 F-V---NGTFI  113 (146)
T ss_dssp             E-E---TTEEE
T ss_pred             E-E---CCEEE
Confidence            5 4   46643

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=90.30  E-value=0.96  Score=39.15  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +...++|.|+. +|+.+..+...+++|..|++..... .+.+...++|+-.  ...  +  +.+.|.+++++- +.+|-|
T Consensus        54 p~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcER-qGL~~~sIRFLFD--GqR--I--~~ddTPeDLdMEDGDtIDV  125 (207)
T 3tix_A           54 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-QGKEMDSLTFLYD--GIE--I--QADQTPEDLDMEDNDIIEA  125 (207)
T ss_dssp             -CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-TTCCGGGSCEEET--TEE--C--CSSCCTTTTTCCTTEEEEE
T ss_pred             CCCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHH-hCCCcccEEEEEC--Cee--c--CCCCCHHHcCCCCCCEEEE
Confidence            35688999985 9999999999999999999876554 3666666666543  332  3  568999999998 566654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=90.25  E-value=1.3  Score=36.83  Aligned_cols=56  Identities=7%  Similarity=-0.042  Sum_probs=32.9

Q ss_pred             cC-CeEEEEEecCCCcchhh--hhhcccCCHHHHHHHhccEE-EEEeecCChhH-HHHHHhCCC
Q 019378           77 QD-KWLLVNLQSTKEFSSHM--LNRDTWANEAVSQTISTNFI-FWQVYDDTSEG-KKVCTYYKL  135 (342)
Q Consensus        77 ~~-K~LlV~l~~~~~~~~~~--f~rdvl~~~~V~~~i~~~FV-~w~~~~~s~eg-~~~~~~y~v  135 (342)
                      .+ +.+|+++..+||..|..  +. .+  ++...++-..++. +++++.++.+. ..+++.+++
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p-~l--~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~  102 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVP-PY--KHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA  102 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHH-HH--HHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHH-HH--HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence            45 46778899999999986  32 11  1112223334677 77877776553 345555554

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=90.02  E-value=0.057  Score=43.58  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.|+..+|+.+.-.+..++||.+|-.-|... .+.++....|+.  -.+.  |  +.+.||.+.|+. +++|.+.
T Consensus         2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~~~~I~~gsti~l~   70 (128)
T 3u5e_m            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV   70 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-hCcChHHEEEEE--CCEE--C--CCCCchhhhccCCCCEEEEE
Confidence            57788999999988999999999999998875 466666677763  3443  4  558999999998 4556543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=89.84  E-value=1.7  Score=31.66  Aligned_cols=72  Identities=17%  Similarity=0.078  Sum_probs=45.1

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChh-H----HHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSE-G----KKVCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~e-g----~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      ++.++.++|..|....       .+.+-+.-.|....++....+ .    ..+...+++.++|.+.+    +|+   .+.
T Consensus        14 v~ly~~~~Cp~C~~~~-------~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~----~g~---~i~   79 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTL-------EFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK----GDK---HVL   79 (92)
T ss_dssp             SEEEECTTCHHHHHHH-------HHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE----TTE---EEE
T ss_pred             EEEEECCCChHHHHHH-------HHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE----CCE---EEe
Confidence            3445678999999863       122223345666655543332 2    45677889999999986    354   355


Q ss_pred             CCCChHHHHHHH
Q 019378          157 GMVQPESLLEDL  168 (342)
Q Consensus       157 G~~~~~~~l~~L  168 (342)
                      |+ +++.+...|
T Consensus        80 G~-~~~~l~~~l   90 (92)
T 3ic4_A           80 GY-NEEKLKELI   90 (92)
T ss_dssp             SC-CHHHHHHHH
T ss_pred             CC-CHHHHHHHh
Confidence            65 888776655

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.57  E-value=1.1  Score=33.43  Aligned_cols=71  Identities=11%  Similarity=-0.028  Sum_probs=50.9

Q ss_pred             eEEEEECCCCceEE--E-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          265 CRVGVRLPDGRRMQ--R-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       265 ~~i~iRlP~G~r~~--r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ..|-|+...|+...  - ....++||.+|-.-|....++.++..-+|+..+=++  .|  +.+.||++.|+.+ ++|+|
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk--~L--~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK--SL--KDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC--CC--CTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc--Cc--CCCCCHHHcCCCCCCEEEE
Confidence            56778888887642  4 788999999999999874456666666776443233  24  5589999999985 44554

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=89.50  E-value=1.9  Score=37.68  Aligned_cols=78  Identities=8%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEE
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      ....+++.+.+.+..+.-...+         ..++.....|.+..-.++  ...+++.|+|..+|+++++++ +|+.. .
T Consensus       154 ~~~~~~~al~f~~~~~~~~~~~---------~~d~~~~~~i~v~~~~~~--~~~l~~~f~v~~~Pslvl~~~-~g~~~-~  220 (244)
T 3q6o_A          154 RNNEEYLALIFEXGGSYLAREV---------ALDLSQHKGVAVRRVLNT--EANVVRKFGVTDFPSCYLLFR-NGSVS-R  220 (244)
T ss_dssp             HCCCSEEEEEEECTTCCHHHHH---------HHHTTTCTTEEEEEEETT--CHHHHHHHTCCCSSEEEEEET-TSCEE-E
T ss_pred             cCCCceEEEEEEECCcchHHHH---------HHHhccCCceEEEEEeCc--hHHHHHHcCCCCCCeEEEEeC-CCCeE-e
Confidence            3677899888888764333332         334444333444433332  256889999999999999996 66643 3


Q ss_pred             EeCCCChHHHH
Q 019378          155 WCGMVQPESLL  165 (342)
Q Consensus       155 ~~G~~~~~~~l  165 (342)
                      +....+..+++
T Consensus       221 ~~~~~~~r~~~  231 (244)
T 3q6o_A          221 VPVLMESRSFY  231 (244)
T ss_dssp             CCCSSSSHHHH
T ss_pred             eccccccHHHH
Confidence            33334444443

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=89.27  E-value=0.88  Score=34.20  Aligned_cols=60  Identities=8%  Similarity=0.073  Sum_probs=37.0

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecCC--hhH-HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      ++.+..+||..|+.+..       +.+-+...   |.++-++.+.  ++. ..+...+++.++|++. +   .|+.+
T Consensus        14 v~~f~~~~C~~C~~~~~-------~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~-~---~g~~i   79 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQE-------LLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF-I---GKECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHH-------HHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE-E---TTEEE
T ss_pred             EEEEEcCCCHhHHHHHH-------HHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE-E---CCEEE
Confidence            45567899999998742       11222223   7776555442  232 2477889999999984 4   36643

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=89.24  E-value=1.5  Score=33.59  Aligned_cols=72  Identities=11%  Similarity=0.107  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCC---hhHHH-HHHhCCCCC
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDT---SEGKK-VCTYYKLDS  137 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s---~eg~~-~~~~y~v~~  137 (342)
                      ..+.+.++...+.++  ++.+..+||..|+...          .+|+   -.|..+-++...   .+... +...++..+
T Consensus         6 ~~~~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~----------~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~t   73 (113)
T 3rhb_A            6 SRMEESIRKTVTENT--VVIYSKTWCSYCTEVK----------TLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHT   73 (113)
T ss_dssp             CHHHHHHHHHHHHSS--EEEEECTTCHHHHHHH----------HHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHhcCC--EEEEECCCChhHHHHH----------HHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCC
Confidence            456667777777777  4556778999999863          3443   356665555432   23222 556678999


Q ss_pred             CcEEEEEeCCCCceE
Q 019378          138 IPVVLVVDPITGQKM  152 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l  152 (342)
                      +|.|. |   +|+.+
T Consensus        74 vP~if-i---~g~~i   84 (113)
T 3rhb_A           74 VPNVF-V---CGKHI   84 (113)
T ss_dssp             SCEEE-E---TTEEE
T ss_pred             cCEEE-E---CCEEE
Confidence            99994 4   46643

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=89.13  E-value=2  Score=32.24  Aligned_cols=74  Identities=14%  Similarity=-0.013  Sum_probs=54.4

Q ss_pred             eeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCC-CCcc-ccCCCcCCChhhcCCcC-ceEEE
Q 019378          264 LCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIP-GATK-SLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       264 ~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fP-r~~~-~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      .++|.|+..++. .+.+++..++||..|-.-|... .|.++..-+|+..-+ .+.. .+ .+.++||.+.|+.+ .+|+|
T Consensus         7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l-~~D~~tL~~y~i~~g~~l~v   84 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKL-DQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEEC-CCSSSBTTSSSCCTTCEEEE
T ss_pred             EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCcccccc-CCCcCCHhHCCCCCCCEEEE
Confidence            478888877664 6999999999999999999886 577777777776432 2210 12 25689999999984 55655

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=89.07  E-value=3.5  Score=31.52  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             CCeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEE
Q 019378          262 SLLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMIS  338 (342)
Q Consensus       262 ~~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~  338 (342)
                      +..++|.|+-++|+ .+..+...+.+++.|++..... .+.....++|+-.  ...  +  +.+.|-+++|+-. ..|-
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-~g~~~~~vrF~FD--G~r--I--~~~~TP~dLdMEDgD~ID   94 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-MGLSGRKLSFFFD--GTK--L--SGRELPADLGMESGDLIE   94 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-TTCSSSCCEEEET--TEE--C--CSCSCHHHHTCCTTEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-HCCCcccEEEEEC--CEE--c--CCCCCHHHcCCCCCCEEE
Confidence            56789999999995 7899999999999999876554 2555566777653  332  3  6689999999984 4443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=88.40  E-value=2.4  Score=29.21  Aligned_cols=70  Identities=14%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ  160 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~  160 (342)
                      ++.++.++|..|+....       +.+-+.=.|...  +++. ++.......|++.++|++.+    +|+.   +.| .+
T Consensus         3 i~~y~~~~C~~C~~~~~-------~l~~~~i~~~~~--di~~~~~~~~~~~~~~~~~vP~l~~----~g~~---~~g-~~   65 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKK-------ALDRAGLAYNTV--DISLDDEARDYVMALGYVQAPVVEV----DGEH---WSG-FR   65 (75)
T ss_dssp             EEEEECTTCHHHHHHHH-------HHHHTTCCCEEE--ETTTCHHHHHHHHHTTCBCCCEEEE----TTEE---EES-CC
T ss_pred             EEEEeCCCChHHHHHHH-------HHHHcCCCcEEE--ECCCCHHHHHHHHHcCCCccCEEEE----CCeE---EcC-CC
Confidence            45678889999998632       111122245444  5543 33334445799999999873    3553   556 46


Q ss_pred             hHHHHHHH
Q 019378          161 PESLLEDL  168 (342)
Q Consensus       161 ~~~~l~~L  168 (342)
                      ++.+...|
T Consensus        66 ~~~l~~~l   73 (75)
T 1r7h_A           66 PERIKQLQ   73 (75)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655443

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=88.24  E-value=3.3  Score=32.74  Aligned_cols=76  Identities=13%  Similarity=0.127  Sum_probs=55.5

Q ss_pred             CeeEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecC-CCCcc-ccCCCcCCChhhcCCcC-ceEE
Q 019378          263 LLCRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAI-PGATK-SLDYDSKLTFEDSGLAN-AMIS  338 (342)
Q Consensus       263 ~~~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~f-Pr~~~-~l~~~~~~Tl~e~gL~~-~~l~  338 (342)
                      ..++|.|+..++. .+.+++..++||..|-.-|... .|.++..-+|+-.= ..+.. .+ .+.+.||.+.|+.+ .+|+
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l-~~D~~tL~~y~i~~g~~ih   82 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGEL-TDGAKSLKDLGVRDGYRIH   82 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEEC-CCCSSBTTTTTCCSSEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCcccccc-CCCcCCHHHCCCCCCCEEE
Confidence            3688888887664 6999999999999999999886 47777888887531 11210 12 25689999999984 5566


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      |+
T Consensus        83 vv   84 (122)
T 1t0y_A           83 AV   84 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=88.01  E-value=1.8  Score=32.56  Aligned_cols=72  Identities=11%  Similarity=0.074  Sum_probs=45.0

Q ss_pred             EEEecCCCcchhhhhhcccCCHHHHHHHhcc---EEEEEeecC-ChhHHHHHH-h-CCCCCCcEEEEEeCCCCceEEEEe
Q 019378           83 VNLQSTKEFSSHMLNRDTWANEAVSQTISTN---FIFWQVYDD-TSEGKKVCT-Y-YKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        83 V~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~---FV~w~~~~~-s~eg~~~~~-~-y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      +.+..++|+.|...          +++|+++   |...  |++ ++++.+... . .+..++|.|.|-|   |+.+   .
T Consensus         7 ~vYs~~~Cp~C~~a----------K~~L~~~gi~y~~i--di~~d~~~~~~~~~~~~G~~tVP~I~i~D---g~~l---~   68 (92)
T 2lqo_A            7 TIYTTSWCGYCLRL----------KTALTANRIAYDEV--DIEHNRAAAEFVGSVNGGNRTVPTVKFAD---GSTL---T   68 (92)
T ss_dssp             EEEECTTCSSHHHH----------HHHHHHTTCCCEEE--ETTTCHHHHHHHHHHSSSSSCSCEEEETT---SCEE---E
T ss_pred             EEEcCCCCHhHHHH----------HHHHHhcCCceEEE--EcCCCHHHHHHHHHHcCCCCEeCEEEEeC---CEEE---e
Confidence            34456799999986          4566653   4433  554 455555443 3 2678999988744   5543   3


Q ss_pred             CCCChHHHHHHHHhhhh
Q 019378          157 GMVQPESLLEDLVPFMD  173 (342)
Q Consensus       157 G~~~~~~~l~~L~~~l~  173 (342)
                      | .+++++...|.+...
T Consensus        69 ~-~~~~el~~~L~el~g   84 (92)
T 2lqo_A           69 N-PSADEVKAKLVKIAG   84 (92)
T ss_dssp             S-CCHHHHHHHHHHHHC
T ss_pred             C-CCHHHHHHHHHHhcC
Confidence            3 578888887776643

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=87.53  E-value=1.6  Score=34.14  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=46.6

Q ss_pred             CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc------cEEEEEeecCCh--hH-HHHHH
Q 019378           61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST------NFIFWQVYDDTS--EG-KKVCT  131 (342)
Q Consensus        61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~------~FV~w~~~~~s~--eg-~~~~~  131 (342)
                      .|......+.++.+.+..+  ++.+..+||..|...         ++.+|.+      .|..+-++.+..  +. ..+..
T Consensus         8 ~~~~~~~~~~~~~~i~~~~--Vvvf~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~   76 (118)
T 3c1r_A            8 HMVSQETIKHVKDLIAENE--IFVASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYE   76 (118)
T ss_dssp             CCSCHHHHHHHHHHHHHSS--EEEEECSSCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHccCc--EEEEEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHH
Confidence            3555666677777766665  344677899999987         1333332      355544443321  12 34777


Q ss_pred             hCCCCCCcEEEEEeCCCCce
Q 019378          132 YYKLDSIPVVLVVDPITGQK  151 (342)
Q Consensus       132 ~y~v~~~P~l~ii~p~tG~~  151 (342)
                      .|++.++|.|. +   +|+.
T Consensus        77 ~~g~~tvP~vf-i---~g~~   92 (118)
T 3c1r_A           77 INGQRTVPNIY-I---NGKH   92 (118)
T ss_dssp             HHSCCSSCEEE-E---TTEE
T ss_pred             HhCCCCcCEEE-E---CCEE
Confidence            89999999874 4   3664

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=87.30  E-value=1.7  Score=30.68  Aligned_cols=54  Identities=6%  Similarity=0.048  Sum_probs=33.4

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ++.++.++|..|+.+.. +|      +-..-.|..+-++.+......+...+++.++|++.
T Consensus         3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~   56 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKA-LL------SSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF   56 (82)
T ss_dssp             EEEEECSSCHHHHHHHH-HH------HHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred             EEEEECCCChhHHHHHH-HH------HHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            34567889999998631 11      11223465554443333334577889999999985

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=86.59  E-value=0.13  Score=42.94  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|.|+..+|+.+.-.+..++||.+|-.-|... .+.++...+|+.  -.+.  |  +.+.||.+.|+. +++|.+.
T Consensus         2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~--L--~D~~tL~dygI~~gstL~Lv   70 (152)
T 3u5c_f            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQ--L--EDGRTLSDYNIQKESTLHLV   70 (152)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEE--c--cccCcHHHcCCCCCCEEEEE
Confidence            57889999998888899999999999998875 366666667763  3443  4  457999999998 4566543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=86.59  E-value=3.5  Score=34.30  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      ++..++|.++|+++ |+   |+.+  +.|. +.+.|...|...+..
T Consensus       147 ~a~~~gv~gtPt~v-in---g~~~--~~g~-~~~~l~~~i~~~~~~  185 (193)
T 2rem_A          147 YALKVRPVGTPTIV-VN---GRYM--VTGH-DFEDTLRITDYLVSR  185 (193)
T ss_dssp             HHHHHCCSSSSEEE-ET---TTEE--ECCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCeEE-EC---CEEE--ecCC-CHHHHHHHHHHHHHH
Confidence            35678999999955 43   6643  4677 889998888777653

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=86.23  E-value=1.9  Score=30.52  Aligned_cols=66  Identities=17%  Similarity=0.358  Sum_probs=39.0

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCC
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQ  160 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~  160 (342)
                      ++.++.++|..|+.+.. +|      +-+.-.|..  +|++. ++.......|++.++|++ +++   |+.   +.| .+
T Consensus         3 v~~f~~~~C~~C~~~~~-~l------~~~~i~~~~--vdi~~~~~~~~~~~~~g~~~vP~~-~~~---g~~---~~g-~~   65 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKR-AM------ENRGFDFEM--INVDRVPEAAEALRAQGFRQLPVV-IAG---DLS---WSG-FR   65 (81)
T ss_dssp             EEEEECTTCHHHHHHHH-HH------HHTTCCCEE--EETTTCHHHHHHHHHTTCCSSCEE-EET---TEE---EES-CC
T ss_pred             EEEEcCCCChhHHHHHH-HH------HHCCCCeEE--EECCCCHHHHHHHHHhCCCccCEE-EEC---CEE---Eec-CC
Confidence            46678899999998742 11      112224544  45653 444444456899999998 443   553   445 45


Q ss_pred             hHHH
Q 019378          161 PESL  164 (342)
Q Consensus       161 ~~~~  164 (342)
                      ++++
T Consensus        66 ~~~l   69 (81)
T 1h75_A           66 PDMI   69 (81)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.95  E-value=3.9  Score=31.36  Aligned_cols=70  Identities=9%  Similarity=0.041  Sum_probs=50.9

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v~  340 (342)
                      ...+.+++ +|+.+.-.+..++||..|-.-|... .|.++..=+|+ .||...  +  +.+.||.+.||.+ ++|+++
T Consensus         9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-tgIpp~~QkLi-~~~~gk--L--~D~~tLs~~~I~~gstL~lv   79 (100)
T 2dzm_A            9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-LQIPVSKMLLK-GWKTGD--V--EDSTVLKSLHLPKNNSLYVL   79 (100)
T ss_dssp             EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-HCCCTTTCCEE-CCSSSC--C--CTTSBHHHHCCCSEEEEEEC
T ss_pred             eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-HCCChhHeEEE-ccCCCC--C--CCcCCHHHcCCCCCCEEEEE
Confidence            45677777 6677888899999999999998875 46665555563 355543  4  4589999999985 556554

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=85.65  E-value=2.9  Score=31.60  Aligned_cols=72  Identities=11%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           68 EKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        68 ~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      .+-+....+.++ ++||..+    +||..|+...+ +|      +-++-.|..+-++.+......+...++..++|.|. 
T Consensus         7 ~~~~~~~i~~~~-vvvf~~g~~~~~~C~~C~~~~~-~L------~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~-   77 (105)
T 2yan_A            7 EERLKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-IL------NSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY-   77 (105)
T ss_dssp             HHHHHHHHTSSS-EEEEESBCSSSBCTTHHHHHHH-HH------HHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHHHHhccCC-EEEEEecCCCCCCCccHHHHHH-HH------HHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE-
Confidence            344445555554 6666652    89999998632 11      11222455554443322223466778999999985 


Q ss_pred             EeCCCCce
Q 019378          144 VDPITGQK  151 (342)
Q Consensus       144 i~p~tG~~  151 (342)
                      +   +|+.
T Consensus        78 i---~g~~   82 (105)
T 2yan_A           78 V---KGEL   82 (105)
T ss_dssp             E---TTEE
T ss_pred             E---CCEE
Confidence            4   4664

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=85.61  E-value=1.3  Score=34.12  Aligned_cols=63  Identities=3%  Similarity=-0.092  Sum_probs=36.9

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--hhH-HHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--SEG-KKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--~eg-~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      +|.+..++|..|..+.. +|..-.+.   ..+|..+-++.+.  .+. ..+...|++.++|+++ +   +|+.+
T Consensus        21 vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~-i---~g~~i   86 (114)
T 2hze_A           21 VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF-F---GKTSI   86 (114)
T ss_dssp             EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE-E---TTEEE
T ss_pred             EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE-E---CCEEE
Confidence            45567889999998742 22221110   0116665544443  122 3577889999999875 3   36654

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=85.49  E-value=1.7  Score=31.21  Aligned_cols=60  Identities=5%  Similarity=-0.076  Sum_probs=35.5

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh--hHHHHHHhCCC-----CCCcEEEEEeCCCCceE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS--EGKKVCTYYKL-----DSIPVVLVVDPITGQKM  152 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~--eg~~~~~~y~v-----~~~P~l~ii~p~tG~~l  152 (342)
                      ++.++.++|..|+....       +.+-..-.|-...++....  ....+...++.     .++|.+.|    +|+.+
T Consensus         6 v~ly~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i----~g~~i   72 (89)
T 3msz_A            6 VKIYTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI----DDEHI   72 (89)
T ss_dssp             EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE----TTEEE
T ss_pred             EEEEEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE----CCEEE
Confidence            56677789999998631       1122222455554444322  12357777777     99999964    46643

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=84.32  E-value=2.8  Score=33.83  Aligned_cols=67  Identities=10%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH-HHHHHhCCCC
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLD  136 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg-~~~~~~y~v~  136 (342)
                      .+..+.++...+.++ +.||..+    ++|..|...          +++|++   .|..+-++.+ ++. ..+...++..
T Consensus        22 ~~~~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~a----------k~~L~~~gv~y~~vdI~~d-~~~~~~L~~~~G~~   89 (135)
T 2wci_A           22 STTIEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQA----------VQALAACGERFAYVDILQN-PDIRAELPKYANWP   89 (135)
T ss_dssp             CHHHHHHHHHHHHCS-EEEEESBCSSSBSSHHHHHH----------HHHHHTTCSCCEEEEGGGC-HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhccCC-EEEEEEecCCCCCCccHHHH----------HHHHHHcCCceEEEECCCC-HHHHHHHHHHHCCC
Confidence            356667777777665 6677776    789988875          445544   4555544433 333 3455667888


Q ss_pred             CCcEEEE
Q 019378          137 SIPVVLV  143 (342)
Q Consensus       137 ~~P~l~i  143 (342)
                      ++|.|.|
T Consensus        90 tvP~VfI   96 (135)
T 2wci_A           90 TFPQLWV   96 (135)
T ss_dssp             SSCEEEE
T ss_pred             CcCEEEE
Confidence            9998764

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=84.20  E-value=2.1  Score=34.01  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             EEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc--------CceE
Q 019378          267 VGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA--------NAMI  337 (342)
Q Consensus       267 i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~--------~~~l  337 (342)
                      |.|+.-.|+ .+.-....++||..|-.-|... .|.+...-+|+.+  .+.  |  +.++||.+.|+.        +++|
T Consensus         3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~-egIP~~qQrLi~~--Gk~--L--eD~~TLsdy~I~~~~a~~q~~stL   75 (118)
T 2fnj_B            3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGI-LKRPPEEQRLYKD--DQL--L--DDGKTLGECGFTSQTARPQAPATV   75 (118)
T ss_dssp             EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTTSBTTBCEEE
T ss_pred             EEEEEecCCEEEEEEeCCcChHHHHHHHHHHH-hCCCHHHeEEEEC--CeE--C--CCCCCHHHcCcccccccCCCCCEE
Confidence            344444565 4777899999999999999885 5777888899843  543  4  668999999998        4667


Q ss_pred             EEE
Q 019378          338 SVT  340 (342)
Q Consensus       338 ~v~  340 (342)
                      .+.
T Consensus        76 ~L~   78 (118)
T 2fnj_B           76 GLA   78 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=83.98  E-value=6.3  Score=31.97  Aligned_cols=63  Identities=16%  Similarity=0.262  Sum_probs=42.8

Q ss_pred             hccEEEEEeecCChhHHHHHHhCCCCC--CcEEEEEeC-CCCceEEEEe-CCCChHHHHHHHHhhhhc
Q 019378          111 STNFIFWQVYDDTSEGKKVCTYYKLDS--IPVVLVVDP-ITGQKMRSWC-GMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       111 ~~~FV~w~~~~~s~eg~~~~~~y~v~~--~P~l~ii~p-~tG~~l~~~~-G~~~~~~~l~~L~~~l~~  174 (342)
                      +..++|..+|.+..+...++..|++..  +|.++|++. ..+.. .... |.++++.+..-+..+++-
T Consensus        62 kgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~K-y~~~~~~~t~~~i~~Fv~d~l~G  128 (147)
T 3bj5_A           62 KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTK-YKPESEELTAERITEFCHRFLEG  128 (147)
T ss_dssp             TTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEE-ECCSCCCCCHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEeccccccc-CCCCcccCCHHHHHHHHHHHHcC
Confidence            345677766765456556888999975  999999985 33332 2223 678888877777777763

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=83.53  E-value=2.3  Score=30.82  Aligned_cols=53  Identities=6%  Similarity=0.014  Sum_probs=33.2

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhC-CCCCCcEEEE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYY-KLDSIPVVLV  143 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y-~v~~~P~l~i  143 (342)
                      ++.++.++|..|+.... +      .+-..-.|...  +++......+...+ ++.++|++.+
T Consensus         8 v~~y~~~~C~~C~~~~~-~------L~~~~i~~~~v--dv~~~~~~~l~~~~~~~~~vP~l~~   61 (89)
T 2klx_A            8 IILYTRPNCPYCKRARD-L------LDKKGVKYTDI--DASTSLRQEMVQRANGRNTFPQIFI   61 (89)
T ss_dssp             EEEESCSCCTTTHHHHH-H------HHHHTCCEEEE--CSCHHHHHHHHHHHHSSCCSCEEEE
T ss_pred             EEEEECCCChhHHHHHH-H------HHHcCCCcEEE--ECCHHHHHHHHHHhCCCCCcCEEEE
Confidence            56678899999998631 1      11122345444  55522234577888 9999999853

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=83.44  E-value=2.1  Score=31.16  Aligned_cols=51  Identities=4%  Similarity=-0.029  Sum_probs=31.8

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCCcEEE
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~  142 (342)
                      ++.++.++|..|+...          .++++   .|...-++.+......+...+++.++|.+.
T Consensus         8 v~ly~~~~C~~C~~~~----------~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~   61 (92)
T 2khp_A            8 VIIYTRPGCPYCARAK----------ALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF   61 (92)
T ss_dssp             EEEEECTTCHHHHHHH----------HHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred             EEEEECCCChhHHHHH----------HHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            5567788999999763          33432   455543332222234577788999999753

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=83.37  E-value=8  Score=28.92  Aligned_cols=73  Identities=11%  Similarity=0.117  Sum_probs=42.3

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCCh-hHHH----HHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTS-EGKK----VCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~-eg~~----~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      ++.++.++|..|....       .+.+-+.-.|-...++.... +...    +...++..++|.|.| +  .|+.   + 
T Consensus        24 v~ly~~~~Cp~C~~ak-------~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~--~~~~---i-   89 (103)
T 3nzn_A           24 VIMYGLSTCVWCKKTK-------KLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-N--DEKA---I-   89 (103)
T ss_dssp             EEEEECSSCHHHHHHH-------HHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-T--TTEE---E-
T ss_pred             EEEEcCCCCchHHHHH-------HHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-C--CCEE---E-
Confidence            4456788999999973       12222334566665554333 2222    234578999999876 2  2232   3 


Q ss_pred             CCCChHHHHHHH
Q 019378          157 GMVQPESLLEDL  168 (342)
Q Consensus       157 G~~~~~~~l~~L  168 (342)
                      |..+++++.+.|
T Consensus        90 gg~~~~~l~~~L  101 (103)
T 3nzn_A           90 VGFKEKEIRESL  101 (103)
T ss_dssp             ESCCHHHHHHHT
T ss_pred             EcCCHHHHHHHh
Confidence            446777765543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=83.31  E-value=7.6  Score=31.71  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=24.5

Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      +++.++|.+.|+++|    +|+   .+.|..+.+.|...|
T Consensus       141 ~a~~~gv~gtPt~vv----ng~---~~~G~~~~~~l~~~i  173 (175)
T 1z6m_A          141 EANAAHIQFVPTIII----GEY---IFDESVTEEELRGYI  173 (175)
T ss_dssp             HHHHHTCCSSCEEEE----TTE---EECTTCCHHHHHHHH
T ss_pred             HHHHcCCCCcCeEEE----CCE---EccCCCCHHHHHHHh
Confidence            456789999999654    466   357988888887655

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=83.09  E-value=3.5  Score=31.46  Aligned_cols=57  Identities=11%  Similarity=0.223  Sum_probs=35.0

Q ss_pred             HHHcCCeEEEEEec----CCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH-HHHHHhCCCCCCcEEE
Q 019378           74 ASVQDKWLLVNLQS----TKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG-KKVCTYYKLDSIPVVL  142 (342)
Q Consensus        74 Ak~~~K~LlV~l~~----~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg-~~~~~~y~v~~~P~l~  142 (342)
                      ..+.++ ++||..+    ++|..|....          .+|++   .|..+-++.+ ++. ..+...++..++|.|.
T Consensus        11 ~i~~~~-vvvy~~g~~~~~~Cp~C~~ak----------~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~if   75 (109)
T 1wik_A           11 LTNKAS-VMLFMKGNKQEAKCGFSKQIL----------EILNSTGVEYETFDILED-EEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             HHTTSS-EEEEESSTTTCCCSSTHHHHH----------HHHHHTCSCEEEEESSSC-HHHHHHHHHHHSCCSSCEEE
T ss_pred             HhccCC-EEEEEecCCCCCCCchHHHHH----------HHHHHcCCCeEEEECCCC-HHHHHHHHHHhCCCCCCEEE
Confidence            334444 6677765    8999999863          34433   4555544332 333 3466777889999864

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=81.85  E-value=6.5  Score=30.44  Aligned_cols=72  Identities=11%  Similarity=0.018  Sum_probs=51.7

Q ss_pred             CCCeeEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc--C
Q 019378          261 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA--N  334 (342)
Q Consensus       261 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~--~  334 (342)
                      +++.++++|.+-|    +..+.-.+..++||..|-+-+.... |.++..=+|+.+  ++   + .+.+.||.+.|+.  +
T Consensus        19 ~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-Gipp~~QRli~g--gk---l-l~D~~TL~~ygI~~~G   91 (105)
T 4dbg_A           19 PTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-GFPPVLQQWVIG--QR---L-ARDQETLHSHGVRQNG   91 (105)
T ss_dssp             -CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TE---E-ECTTCBTGGGTCCSTT
T ss_pred             CCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-CCCHHHEEEecc--Ce---E-ccCcCcHHHcCCCCCC
Confidence            3445666666544    3578889999999999999998763 777766677754  43   3 3668999999994  5


Q ss_pred             ceEEE
Q 019378          335 AMISV  339 (342)
Q Consensus       335 ~~l~v  339 (342)
                      .+|++
T Consensus        92 ~t~hL   96 (105)
T 4dbg_A           92 DSAYL   96 (105)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	2e-33
d2cr5a1	96	d.15.1.2 (A:8-103) UBX domain-containing protein 6	5e-13
d1i42a_	89	d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId:	1e-12
d1wj4a_	124	d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human	1e-10
d1h8ca_	82	d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human	2e-09

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 11/156 (7%)

Query: 39  GAASTADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNR 98
             +S  D     LA L+RPP  LM  GSFE AK+   +Q+KWL++N+Q+ ++F+   LNR
Sbjct: 3   SGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNR 62

Query: 99  DTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGM 158
           D W+NEAV   I  +FIFWQVY D+ EG++   +YKL   P V ++DP TGQK+  W   
Sbjct: 63  DVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQ 121

Query: 159 VQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTT 194
           +   S L+ +  F+            H +  G S++
Sbjct: 122 LDVSSFLDQVTGFLG----------EHGQLDGLSSS 147

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 251 PILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH 310
           P LPEEP      +  V +R P+GR ++R F ++   Q+L  +         +  +RL+ 
Sbjct: 3   PDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSL--YRLST 60

Query: 311 AIPGATKSLDYDSKLTFEDSGLANAMI 337
           + P   ++L+ +   + ED G+    +
Sbjct: 61  SFPR--RALEVEGGSSLEDIGITVDTV 85

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 89

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSK 324
             + +RL DG R+ + F  +  I  +  +            F L    P   K L  D  
Sbjct: 15  TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN--KELA-DEN 71

Query: 325 LTFEDSGLANAMISVTW 341
            T +++ L NA+I    
Sbjct: 72  QTLKEANLLNAVIVQRL 88

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 224 ASGVSSSDTDVASTDKDEASATEKPAYPILPEEPKVDRSL-LCRVGVRLPDGRRMQRNFL 282
           +SG S + T+       ++   E P          +D +    ++ +R PDG+R Q    
Sbjct: 2   SSGSSGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPKAQLMLRYPDGKREQITLP 61

Query: 283 RTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN 334
               +  L    + Q +G   + F L    P    S       T +++GL  
Sbjct: 62  EQAKLLAL--VKHVQSKGYPNERFELLTNFPRRKLSHLDYDI-TLQEAGLCP 110

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSK 324
            ++ +R P G  ++R FL ++ +Q+++ +  S  +G     ++L    P    +   D  
Sbjct: 6   SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS--KGFPWDEYKLLSTFPRRDVTQL-DPN 62

Query: 325 LTFEDSGLA-NAMISV 339
            +  +  L     + +
Sbjct: 63  KSLLEVKLFPQETLFL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.97
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	99.86
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	99.78
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	99.73
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.4
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.39
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.11
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.11
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.04
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.01
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.99
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.98
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.96
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.94
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.86
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.84
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.83
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.82
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.72
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.72
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.65
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.61
d1s3si_	50	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.6
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.51
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.44
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.37
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.37
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.37
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.36
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.3
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.29
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.24
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.21
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.07
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.04
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.03
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.01
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.01
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	97.98
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	97.97
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.97
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.89
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.88
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.78
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.73
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.65
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.23
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	97.19
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.04
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	96.97
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	96.94
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	96.9
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	96.88
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	96.76
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	96.7
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	96.69
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	96.67
d1wjka_	100	Thioredoxin-like structure containing protein C330	96.49
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	96.46
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.46
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.38
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	96.34
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	96.3
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	96.27
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.27
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	96.2
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	96.19
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	96.18
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	96.09
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	95.91
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	95.87
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.84
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	95.84
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	95.83
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	95.78
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	95.71
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.67
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.59
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	95.47
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	95.45
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	95.35
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	95.21
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	95.18
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.05
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	94.81
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	94.69
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	94.53
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	94.52
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	94.37
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	94.33
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	94.24
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.19
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	94.05
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	93.72
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	93.62
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	93.51
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	92.97
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	92.13
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	91.98
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	91.73
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	91.66
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	91.38
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	91.37
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	90.63
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	90.57
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	90.46
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	89.91
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	89.69
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	89.57
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	88.99
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	88.92
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	88.58
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	88.02
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	84.13
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	83.8
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	80.78

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=229.79  Aligned_cols=135  Identities=43%  Similarity=0.850  Sum_probs=126.3

Q ss_pred             cccchhHHHHHHhhCCCCcCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeec
Q 019378           42 STADSSRDNLASLYRPPFHLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD  121 (342)
Q Consensus        42 ~~~~~~~~~l~~~f~pp~~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~  121 (342)
                      +..+.+...|+++|+||++++|.|+|++|++.|++++||||||||++||++|+.|+++||+|++|++++++|||+|++++
T Consensus         6 ~~~~~~~~~~a~~~~pp~~i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~   85 (147)
T d2dlxa1           6 SGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYH   85 (147)
T ss_dssp             CCCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEES
T ss_pred             CCcccchHHHHHhhCCCccccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecc
Confidence            34455666889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcCCC
Q 019378          122 DTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPR  177 (342)
Q Consensus       122 ~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~~~  177 (342)
                      +++++..+++.|++.++|+++||+|++|+++..| |.+++++|+..|..|++.++.
T Consensus        86 ~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~-~~~~~~~fl~~L~~fl~~~~~  140 (147)
T d2dlxa1          86 DSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLGEHGQ  140 (147)
T ss_dssp             SSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEE-SSCCHHHHHHHHHHHHHHTCS
T ss_pred             cchhhhhhhhheecCceeEEEEEeCCCCeEeccc-CCCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999777 558999999999999997643

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=7e-22  Score=154.03  Aligned_cols=88  Identities=27%  Similarity=0.499  Sum_probs=77.7

Q ss_pred             CCCCCCCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhh
Q 019378          250 YPILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFED  329 (342)
Q Consensus       250 ~~~l~~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e  329 (342)
                      .+.||+||+.+.+++|+|+||||||+|++|+|+.+++|++||+||.+.  ++....|.|+++|||+.  +..+.++||+|
T Consensus         2 ~~~lp~EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~--~~~~~~f~l~~~~Pr~~--~~~d~~~TL~e   77 (96)
T d2cr5a1           2 VPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRA--LEVEGGSSLED   77 (96)
T ss_dssp             CCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCB--CCCCSSCBHHH
T ss_pred             CCCCCCCCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh--ccCcccceeecCCCcee--cCccCCCcHHH
Confidence            367999999888999999999999999999999999999999999987  55678999999999986  54578999999


Q ss_pred             cCCcC-ceEEEEe
Q 019378          330 SGLAN-AMISVTW  341 (342)
Q Consensus       330 ~gL~~-~~l~v~w  341 (342)
                      +||.+ ++|+|.+
T Consensus        78 ~gl~p~~~L~v~~   90 (96)
T d2cr5a1          78 IGITVDTVLNVEE   90 (96)
T ss_dssp             HTCSSCEEEEEEE
T ss_pred             CCCCCCCEEEEec
Confidence            99996 5556654

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=8.3e-21  Score=145.76  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=70.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEe
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTW  341 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w  341 (342)
                      +++|+|+||||||++++|+|+.+++|++||+||.++..+....+|.|+++|||+.  +. |.++||+|+||.|++|+|+|
T Consensus        12 ~p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~--l~-d~~~TL~e~gL~~s~vl~k~   88 (89)
T d1i42a_          12 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKE--LA-DENQTLKEANLLNAVIVQRL   88 (89)
T ss_dssp             SCCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEE--CC-CCSSCSGGGTTCCSEEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcc--cC-CCcCcHHHCCCcCceEEEEe
Confidence            4579999999999999999999999999999999876566778999999999986  54 78999999999999999999

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-19  Score=134.26  Aligned_cols=77  Identities=17%  Similarity=0.392  Sum_probs=66.8

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ++++|+|+||||||+|++|+|+.+++|++||+||.+.  ++.+.+|.|+++|||+..+. .|.++||+|+||.+ ++|+|
T Consensus         2 ~e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~--~~~~~~~~l~~~~Pr~~l~~-~d~~~TL~e~gL~p~~~L~v   78 (82)
T d1h8ca_           2 AEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVTQ-LDPNKSLLEVKLFPQETLFL   78 (82)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH--TCCSSSEEEEETTTTEETTT-CCTTSBHHHHCCCSEEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc--CCCCCceEEEecCccccccc-ccccCCHHHCCCCCCCEEEE
Confidence            4678999999999999999999999999999999986  66788999999999997432 46899999999985 55655


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      .
T Consensus        79 q   79 (82)
T d1h8ca_          79 E   79 (82)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6e-18  Score=137.42  Aligned_cols=78  Identities=23%  Similarity=0.320  Sum_probs=67.0

Q ss_pred             CCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEE
Q 019378          260 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMIS  338 (342)
Q Consensus       260 ~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~  338 (342)
                      ...+.|+|+||||||+|++|||+.+++|++||+||.+.  ++....|.|+++|||+.+. ..|.++||+|+||++ ++|+
T Consensus        39 ~~~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~--~~~~~~~~L~~~fPr~~l~-~~d~~~TL~e~gL~P~~~L~  115 (124)
T d1wj4a_          39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRKLS-HLDYDITLQEAGLCPQETVF  115 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEET-SSCSSSCTTTTTCCSSBCCE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--ccCCcceEEeecccccccc-cccccCcHHHcCCCCCCEEE
Confidence            34568999999999999999999999999999999886  5677899999999999733 247899999999995 5566


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      |.
T Consensus       116 ve  117 (124)
T d1wj4a_         116 VQ  117 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=111.89  Aligned_cols=110  Identities=17%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             CcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHh-CCCCCCc
Q 019378           61 LMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTY-YKLDSIP  139 (342)
Q Consensus        61 ~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~-y~v~~~P  139 (342)
                      +-| -+|++|++.|++++|+|||+|+.+||.+|+.|...++.+++|.. ++.+||+..+|.+....  .... +....+|
T Consensus         9 i~w-~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~--~~~~~~~~~~~P   84 (135)
T d1sena_           9 IHW-RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE-LSHNFVMVNLEDEEEPK--DEDFSPDGGYIP   84 (135)
T ss_dssp             SCB-CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-HHTTSEEEEEEGGGSCS--CGGGCTTCSCSS
T ss_pred             eee-eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHH-hcCCcEEEeCCCCcCHH--HHHHHhhcccce
Confidence            345 48999999999999999999999999999999999999999988 57899999988765332  2222 3446689


Q ss_pred             EEEEEeCCCCceEEEEeC----------CCChHHHHHHHHhhhhcC
Q 019378          140 VVLVVDPITGQKMRSWCG----------MVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G----------~~~~~~~l~~L~~~l~~~  175 (342)
                      ++++++| .|+.+..+.|          +.+.+.++..+..+++..
T Consensus        85 t~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~  129 (135)
T d1sena_          85 RILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL  129 (135)
T ss_dssp             EEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred             eEEEECC-CCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHh
Confidence            9999998 6887766665          356788888888887753

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=8.1e-13  Score=104.72  Aligned_cols=104  Identities=13%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeec--CChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD--DTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~--~s~eg~~~~~~y~v~~~P~  140 (342)
                      ....+++++..  .++|++||+|+.+||..|+.|...++.+++|.+..+ +++++.+++  +......+++.|++..+|+
T Consensus         9 ~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt   85 (117)
T d2fwha1           9 TVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPT   85 (117)
T ss_dssp             SHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHH--cCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceE
Confidence            34566666644  469999999999999999999999999999999875 455555554  4566778999999999999


Q ss_pred             EEEEeCCCCceE--EEEeCCCChHHHHHHHHh
Q 019378          141 VLVVDPITGQKM--RSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       141 l~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~  170 (342)
                      ++++++ +|+.+  .++.|..++++|++.|++
T Consensus        86 ~~~~~~-~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          86 ILFFDG-QGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEEEeC-CCcEEecccccccCCHHHHHHHHhc
Confidence            999997 68765  468899999999988764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=4.6e-10  Score=88.43  Aligned_cols=99  Identities=12%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      -...|++.+..|++.+|++||+|+++||.+|+.+..      .+.++.+  .++++..++.+.  ...++..|+|.++|+
T Consensus        13 s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p------~~~~l~~~~~~~~~~~vd~~~--~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_          13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPT   84 (114)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHHhhccCCeEEEEEEcCCCCCcccccc------chhhhcccccccceeEEEeee--ceeeccccceeeeEE
Confidence            456899999999999999999999999999999963      3333333  257777666654  567899999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          141 VLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       141 l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      ++++.  +|+.+.++.|. ++++|.+.|.+.|
T Consensus        85 ~~~~~--~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          85 FMFLK--EGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEE--TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEE--CCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            99985  79999999994 7888877766554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.11  E-value=3.4e-10  Score=89.02  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=81.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ...|++.+..+..++|+++|+|+++||.+|+.+...+   ..+......++.+..+|++.  ...++..|++.++|++++
T Consensus        10 ~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~~   84 (112)
T d1ep7a_          10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHV   84 (112)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEE
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhh---hhhhhcccceEEEEEeeccc--cccccccccccCCCEEEE
Confidence            4678999999999999999999999999999996543   45666666778888888764  457899999999999998


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      +.  +|+.+.++.| .++++|.+.|.+
T Consensus        85 ~~--~G~~v~~~~G-~~~~~l~~~i~k  108 (112)
T d1ep7a_          85 YK--DGVKADDLVG-ASQDKLKALVAK  108 (112)
T ss_dssp             EE--TTEEEEEEES-CCHHHHHHHHHH
T ss_pred             EE--CCEEEEEEeC-cCHHHHHHHHHH
Confidence            86  7999999999 477766544433

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.04  E-value=1e-09  Score=85.25  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++.+   .+.+|++||+|+++||..|..+.+.+   +++.....+.+.+..+|++.  ...+++.|+|.++|++++
T Consensus         9 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~I~~~Pt~~~   80 (108)
T d1thxa_           9 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDP--NPTTVKKYKVEGVPALRL   80 (108)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTT--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHH---HhCCCcEEEEEECCCCCCccccchHH---HHHHHhcCCcceeceecccc--cHHHHHHhcccCCCEEEE
Confidence            35666544   35579999999999999999997643   55667777788888888764  567899999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.  +|+.+.++.|..+++.|.+.|.+.|+
T Consensus        81 ~~--~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          81 VK--GEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EE--CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            97  68999999999999999988887663

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.01  E-value=8.5e-10  Score=85.60  Aligned_cols=99  Identities=14%  Similarity=0.274  Sum_probs=79.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|++.+   .+.+|++||+|+++||..|..|.. +|  ..+......++.+..+|++.  ...+++.|+|.++|++.++
T Consensus         9 ~~f~~~v---~~s~kpvlv~F~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           9 DTFKNVV---LESSVPVLVDFWAPWCGPCRIIAP-VV--DEIAGEYKDKLKCVKLNTDE--SPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             HHHHHHT---TTCSSCEEEEEECTTCHHHHHHHH-HH--HHHHHHTTTTCEEEEEETTT--CHHHHHHHTCCSSCEEEEE
T ss_pred             HHHHHHH---HhCCCcEEEEEECCCCCCccccCh-HH--HHHHHhhcccceEEEEeccc--chhHHHHhcccceEEEEEE
Confidence            3455444   356899999999999999999964 33  34555566788888888875  3568999999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      .  +|+.+.++.|..+.++|.+.|.++|+
T Consensus        81 ~--~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          81 K--GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             S--SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             E--CCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            6  79999999999999999998888764

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.99  E-value=1.2e-09  Score=84.39  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=78.7

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++++    +.+|+++|+|+++||.+|+.+...+.   .+..-..+++.+..+|.+..  ..++..|+|.++|++++
T Consensus         7 ~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~---~l~~~~~~~~~~~~vd~~~~--~~~~~~~~V~~~Pt~~~   77 (105)
T d1nw2a_           7 DANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLE---EFAEAHADKVTVAKLNVDEN--PETTSQFGIMSIPTLIL   77 (105)
T ss_dssp             TTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHH---HHHHHHTTTCEEEEEETTTC--HHHHHHTTCCBSSEEEE
T ss_pred             HHHHHHHH----hCCCcEEEEEECCCCCCcccccchhh---hhhhhcCCceEEEEEECCCC--cccHHHCCcceeeEEEE
Confidence            45677655    56899999999999999999964432   34444566899999888753  46789999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  .|+.+.++.|..+.++|.+.|...|
T Consensus        78 ~~--~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          78 FK--GGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EE--CCEEEEEEECCCCHHHHHHHHHHHh
Confidence            96  6999999999999999877776654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.98  E-value=1.4e-09  Score=83.76  Aligned_cols=99  Identities=16%  Similarity=0.276  Sum_probs=78.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++.+   .+.+|++||+|+++||..|..|...+.   .+......++.+..++.+.  ...+++.|+|.++|++++
T Consensus         6 d~~f~~~v---~~~~~~vlv~F~a~wC~~C~~~~~~~~---~l~~~~~~~~~~~~v~~d~--~~~l~~~~~V~~~Pt~~~   77 (104)
T d1fb6a_           6 DSSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVID---ELAKEYSGKIAVYKLNTDE--APGIATQYNIRSIPTVLF   77 (104)
T ss_dssp             TTTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHHH---HHHHHTTTTCEEEEEETTT--CHHHHHHTTCCSSSEEEE
T ss_pred             hhhHHHHH---HcCCCcEEEEEEcCccCCccccCchhH---HHHHhhcCccceeEEeccc--chhhhhhcceeeeeEEEE
Confidence            45677755   356899999999999999999964321   3555556677777777764  567899999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  .|+.+.++.|..+++.|.+.|.++|
T Consensus        78 ~~--~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          78 FK--NGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EE--TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EE--cCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            85  6999999999999999988777653

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.1e-09  Score=83.35  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      ..+|++.+   .+.+|++||+|+++||.+|+.+...+   ..+......++.+..++++..  ..++..|++.++|++++
T Consensus         9 ~~~f~~~v---~~~~~~v~v~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~PT~~~   80 (108)
T d2trxa_           9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLLL   80 (108)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--TTHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHH---HhCCCcEEEEEECCCCCCccccCcHH---HHHHHHhhcceeeeeccccch--hhHHHHhCCCcEEEEEE
Confidence            45665533   35689999999999999999886543   345556677889988888643  46899999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          144 VDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +.  .|+.+.++.|..+++.|.+.|...|
T Consensus        81 ~~--~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          81 FK--NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EE--CCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            86  6999999999999999988877654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.94  E-value=2.1e-09  Score=84.34  Aligned_cols=97  Identities=13%  Similarity=0.235  Sum_probs=77.6

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+|++.+..+...+|++||+|+.+||.+|+.|..      .+.++.+  .++.+..++.+.  ...++..|+|.++|++
T Consensus        12 ~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~I~~~Pt~   83 (113)
T d1ti3a_          12 VDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVDE--LKAVAEEWNVEAMPTF   83 (113)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETTT--CHHHHHHHHCSSTTEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhh------hhhhhhccCCCceEEeeeeec--cccccccCeecccceE
Confidence            46788999999999999999999999999999964      3333333  367777777754  5578999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +++.  +|+.+.++.| .+++.|.+.|.+.
T Consensus        84 ~~~k--~G~~v~~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          84 IFLK--DGKLVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             EEEE--TTEEEEEEEC-CCTTHHHHHHHHH
T ss_pred             EEEE--CCEEEEEEcC-CCHHHHHHHHHHH
Confidence            9996  7999999999 5777776655543

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.4e-09  Score=79.99  Aligned_cols=96  Identities=25%  Similarity=0.356  Sum_probs=73.3

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      ..|++++..+  .+|+++|+|+++||.+|+.+...+   ..+.+-. .+.++..+|.+.  ...++..|++.++|+++++
T Consensus         9 ~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~l~~~~-~~~~~~~vd~d~--~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1           9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKY-SNVIFLEVDVDD--CQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTT--CHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHhC--CCCEEEEEEEcCCccchhhhhhhh---hhhcccc-ccceeeeccccc--CHhHHHHcCceEEEEEEEE
Confidence            4577777654  479999999999999999996432   2233322 356777777764  5578999999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      .  +|+.+.++.|. +++++...|.++
T Consensus        81 ~--~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          81 K--KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             E--TTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             E--CCEEEEEEeCC-CHHHHHHHHHhh
Confidence            5  79999999995 788887776654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=1.9e-08  Score=78.33  Aligned_cols=95  Identities=16%  Similarity=0.287  Sum_probs=71.9

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVV  144 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii  144 (342)
                      .+|+..+..+  .+|++||+|+++||.+|+.+...+   .++..-..+.+.++.++.+.  ...+++.|+|..+|+++++
T Consensus        14 ~~~~~~l~~~--~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~~i~~d~--~~~l~~~~~V~~~Pt~~~~   86 (111)
T d1xwaa_          14 ADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDE--CEDIAMEYNISSMPTFVFL   86 (111)
T ss_dssp             HHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHhc--CCCEEEEEEECCcccCccccchhH---HHHhhhcccceEEEEEEeec--CcchhhcCCCccccEEEEE
Confidence            3456666544  689999999999999999996543   34555555677778777764  4568999999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHH
Q 019378          145 DPITGQKMRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       145 ~p~tG~~l~~~~G~~~~~~~l~~L~  169 (342)
                      .  +|+.+.++.|. +++++.+.|.
T Consensus        87 ~--~G~~v~~~~G~-~~~~l~~~I~  108 (111)
T d1xwaa_          87 K--NGVKVEEFAGA-NAKRLEDVIK  108 (111)
T ss_dssp             E--TTEEEEEEESC-CHHHHHHHHH
T ss_pred             E--CCEEEEEEeCC-CHHHHHHHHH
Confidence            5  79999999995 5566554443

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.1e-08  Score=79.45  Aligned_cols=97  Identities=11%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ...|++.+..+  .+|+++|+|+++||.+|+.+.      +.+.++.++  +..++.+|++.  ...++..|++.++|++
T Consensus         9 ~~~f~~~l~~~--~~klvvv~F~a~wC~~Ck~~~------p~~~~la~~~~~~~f~~vd~d~--~~~l~~~~~v~~~Pt~   78 (107)
T d1gh2a_           9 DPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIA------PAFSSMSNKYPQAVFLEVDVHQ--CQGTAATNNISATPTF   78 (107)
T ss_dssp             GGGHHHHHHHT--TTSCEEEEEECSSCHHHHHHH------HHHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHHhC--CCCEEEEEEECCCCCCccccc------hhhhcccccccccccccccccc--chhhhhhcCceeceEE
Confidence            46788887654  479999999999999999985      334444433  57788878764  5678899999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +++.  +|+.+.++.| .+++.|.+.|.++++
T Consensus        79 ~~~~--~G~~v~~~~G-~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          79 QFFR--NKVRIDQYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEEE--TTEEEEEEES-SCHHHHHHHHHHHHC
T ss_pred             EEEE--CCEEEEEEeC-CCHHHHHHHHHHhhC
Confidence            9995  7999999999 489999888887764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.83  E-value=1e-08  Score=80.29  Aligned_cols=96  Identities=15%  Similarity=0.188  Sum_probs=74.8

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEE
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVV  141 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l  141 (342)
                      ..+|.+++..+  ..|+++|+|+.+||.+|+.+..      .+.++.+  .+.+++.+|.+. +...+++.|+|.++|++
T Consensus        13 ~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~p------~~~~l~~~~~~v~~~~vd~~~-~~~~l~~~~~V~~~Pt~   83 (112)
T d1f9ma_          13 KDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAP------KYEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF   83 (112)
T ss_dssp             TTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSEE
T ss_pred             HHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHHH------HHhhhccccccceeecccccc-cchhhHhheeeccCCEE
Confidence            46677777543  4589999999999999999953      3344443  357788877753 45678999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHhh
Q 019378          142 LVVDPITGQKMRSWCGMVQPESLLEDLVPF  171 (342)
Q Consensus       142 ~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~  171 (342)
                      +++.  +|+.+.++.|. +++.+++.|...
T Consensus        84 ~~~k--~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          84 KILK--ENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEE--CCEEEEEEeCC-CHHHHHHHHHHc
Confidence            9995  79999999996 778888877654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=1.2e-08  Score=78.68  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             HHHHHHHHcCCeE-EEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeC
Q 019378           69 KAKDAASVQDKWL-LVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDP  146 (342)
Q Consensus        69 eA~~~Ak~~~K~L-lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p  146 (342)
                      +..+.++...+++ +++|+++||.+|+.+...+-.-........ ..+.+..+|.  .+...+++.|+|.++|+++|.. 
T Consensus         5 ~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~--~~~~~l~~~~~V~~vPTi~i~~-   81 (107)
T d1a8la2           5 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEA--IEYPEWADQYNVMAVPKIVIQV-   81 (107)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEG--GGCHHHHHHTTCCSSCEEEEEE-
T ss_pred             HHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecc--ccccccccccccccceEEEEEe-
Confidence            4455566656665 567999999999988532211000101111 2355555554  4667899999999999986653 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          147 ITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       147 ~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                       .|+.+.++.|..+.+.|++.|..+|.
T Consensus        82 -~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          82 -NGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             -TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -CCeEEEEEECCCCHHHHHHHHHHhhC
Confidence             79999999999999999999988763

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3.7e-08  Score=79.16  Aligned_cols=93  Identities=15%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH---------------------HHHHHhCC
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG---------------------KKVCTYYK  134 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg---------------------~~~~~~y~  134 (342)
                      .+||++||+|.++||.+|..-.      |.+.++-+.++.+..++.+....                     ..++..|+
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~------p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   91 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG   91 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHT
T ss_pred             cCCCEEEEEEEcCcCCCcCccc------cchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcc
Confidence            4799999999999999998642      44445545555455444433211                     13566789


Q ss_pred             CCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          135 LDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      +.++|+.+|||+ .|+++.++.|.++.+++.+.|...++..
T Consensus        92 v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~ll~kl  131 (136)
T d1z5ye1          92 VYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEKY  131 (136)
T ss_dssp             CCSBSEEEEECT-TSCEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             cCCcceEEEEcC-CCEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence            999999999997 7999999999999999988888888753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.72  E-value=6.9e-08  Score=75.60  Aligned_cols=91  Identities=12%  Similarity=0.201  Sum_probs=72.2

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCC
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG  149 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG  149 (342)
                      +...+.+++++|+|+.+||.+|+.+..      .+.++..  .+..++.+|.+.  ...++..|++.++|+++++.  +|
T Consensus        20 ~~~~~~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~~~~--~G   89 (113)
T d1r26a_          20 RNIMSEDILTVAWFTAVWCGPCKTIER------PMEKIAYEFPTVKFAKVDADN--NSEIVSKCRVLQLPTFIIAR--SG   89 (113)
T ss_dssp             HHHHHSSSCEEEEEECTTCHHHHHTHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEE--TT
T ss_pred             HHHHcCCCeEEEEEECCCCccchhhce------ecccccccccccccccccccc--chhhHHHccccCCCEEEEEE--CC
Confidence            344478899999999999999999853      3333333  367777777754  45789999999999999986  79


Q ss_pred             ceEEEEeCCCChHHHHHHHHhhhh
Q 019378          150 QKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       150 ~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +.+.++.|. +++.+.+.|..++.
T Consensus        90 ~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          90 KMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             EEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             EEEEEEeCC-CHHHHHHHHHHHhc
Confidence            999999995 68888888888775

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.65  E-value=1.6e-07  Score=71.82  Aligned_cols=81  Identities=17%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceE
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l  152 (342)
                      .+++++++|+|+++||.+|+.+...      +.++.+  .+.++..++.+  +...++..|+|.++|+++++.  +|+.+
T Consensus        15 i~~~~~vvv~F~a~wC~~C~~~~~~------~~~l~~~~~~~~~~~vd~d--~~~~~~~~~~V~~~Pt~i~~k--~G~~v   84 (103)
T d1syra_          15 ISQNELVIVDFFAEWCGPCKRIAPF------YEECSKTYTKMVFIKVDVD--EVSEVTEKENITSMPTFKVYK--NGSSV   84 (103)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETT--TTHHHHHHTTCCSSSEEEEEE--TTEEE
T ss_pred             HhCCCcEEEEEeCCcccCccccccc------chhhhhcccceEEEeeccc--cCcceeeeeeeecceEEEEEE--CCEEE
Confidence            3568999999999999999999643      333333  24566666665  445789999999999999985  79999


Q ss_pred             EEEeCCCChHHHHH
Q 019378          153 RSWCGMVQPESLLE  166 (342)
Q Consensus       153 ~~~~G~~~~~~~l~  166 (342)
                      .++.|. +++.+.+
T Consensus        85 ~~~~G~-~~~~l~~   97 (103)
T d1syra_          85 DTLLGA-NDSALKQ   97 (103)
T ss_dssp             EEEESC-CHHHHHH
T ss_pred             EEEeCc-CHHHHHH
Confidence            999995 5655433

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.61  E-value=1.2e-07  Score=74.25  Aligned_cols=98  Identities=7%  Similarity=0.027  Sum_probs=70.0

Q ss_pred             ccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecC--ChhHHHHHHhCCCCCCcEEE
Q 019378           65 GSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDD--TSEGKKVCTYYKLDSIPVVL  142 (342)
Q Consensus        65 gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~--s~eg~~~~~~y~v~~~P~l~  142 (342)
                      .+++ .+..+..++++++|||+.+||.+|+.|...+   .++..-.+....++.++..  ..+...++..|+|.++|+++
T Consensus        14 ~t~~-~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l---~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli   89 (115)
T d1zmaa1          14 TTVV-RAQEALDKKETATFFIGRKTCPYCRKFAGTL---SGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFV   89 (115)
T ss_dssp             CCHH-HHHHHHHTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEE
T ss_pred             CCHH-HHHHHHhcCCCEEEEEcCCCCccHHHHHHHH---HHHHHHhhhhhhhheeecccccccccccccccccccccEEE
Confidence            3443 4566778899999999999999999996432   3333333334333333221  12335688999999999999


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          143 VVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       143 ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                      ++.  +|+.+.++.|..+.+++.+.|
T Consensus        90 ~~~--~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          90 HIT--DGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEE--TTEEEEECCTTCCHHHHHHHH
T ss_pred             EEE--CCEEEEEEcCCCCHHHHHHHH
Confidence            997  689999999999998886544

>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=3.9e-09  Score=69.52  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=11.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHH
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYC  294 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv  294 (342)
                      .++++|||||+||+|++.||+.+++|.+||.||
T Consensus        17 ~PtT~iQiRL~dG~R~v~rFN~~Htv~dir~fI   49 (50)
T d1s3si_          17 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFI   49 (50)
T ss_dssp             ---------------------CCCCHHHHHHHC
T ss_pred             CCceEEEEEeCCCCEEEEEccCccCHHHHHHhh
Confidence            457999999999999999999999999999996

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.51  E-value=2.6e-07  Score=74.79  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=69.1

Q ss_pred             HHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-cEEEEEeecCChh---------------------HHHH
Q 019378           72 DAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-NFIFWQVYDDTSE---------------------GKKV  129 (342)
Q Consensus        72 ~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~FV~w~~~~~s~e---------------------g~~~  129 (342)
                      ..+.-+||++||+|.++||..|+....      .+.++... ++.++++......                     ...+
T Consensus        25 ~~~~~kgK~vll~fwa~wC~~C~~~~p------~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   98 (144)
T d1knga_          25 DPAAFKGKVSLVNVWASWCVPCHDEAP------LLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRA   98 (144)
T ss_dssp             CGGGGTTSCEEEEEECTTCHHHHHHHH------HHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHH
T ss_pred             CHHHhCCCEEEEEeeccccccccccCc------hhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchh
Confidence            344456799999999999999987643      34444432 3444444432211                     1245


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +..|++..+|+++|||+ .|+++.+..|.++.+++.+.|...++
T Consensus        99 ~~~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~~l~  141 (144)
T d1knga_          99 SIEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQME  141 (144)
T ss_dssp             HHHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHH
T ss_pred             hhhcCccccceEEEEcC-CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            67889999999999997 79999999999999988887777665

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.6e-07  Score=73.33  Aligned_cols=99  Identities=7%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEe
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVD  145 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~  145 (342)
                      .+++|+..  .++|+++|+|+.+||.+|+.|..-+   +.+.+-+.+.+++..+|++..  ..+++.|+|.++|+++++.
T Consensus        12 ~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~VDvd~~--~~la~~~~I~~~PT~~~f~   84 (137)
T d1qgva_          12 QVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEV--PDFNKMYELYDPCTVMFFF   84 (137)
T ss_dssp             HHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTC--CTTTTSSCSCSSCEEEEEE
T ss_pred             HHHHHHHh--CCCCEEEEEEECCCCccchhcChHH---HHHHHHhhccceEEEeecccc--chhhhhcCeeeEEEEEEEe
Confidence            56666654  3689999999999999999996433   455555667799999888653  3688999999999999996


Q ss_pred             CCCCceEEEEeC---------C-CChHHHHHHHHhhhh
Q 019378          146 PITGQKMRSWCG---------M-VQPESLLEDLVPFMD  173 (342)
Q Consensus       146 p~tG~~l~~~~G---------~-~~~~~~l~~L~~~l~  173 (342)
                        +|+.+..-.|         . .+.++|++.+.....
T Consensus        85 --~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          85 --RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             --TTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             --CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence              5776644333         2 367788877776654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1.6e-06  Score=67.88  Aligned_cols=98  Identities=11%  Similarity=0.196  Sum_probs=73.0

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh-ccEEEEEeecCChhHHHHHHhCCCCCCcE
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS-TNFIFWQVYDDTSEGKKVCTYYKLDSIPV  140 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~-~~FV~w~~~~~s~eg~~~~~~y~v~~~P~  140 (342)
                      +-..+|++.+    ++++++||+|+++||..|+.|... |  +.+...+. .++.+..+|.+.  ...++..|+|.+||+
T Consensus        15 lt~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~-~--~~la~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt   85 (119)
T d2b5ea4          15 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTE--NQDLCMEHNIPGFPS   85 (119)
T ss_dssp             CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTT--CHHHHHHTTCCSSSE
T ss_pred             cCHHHHHHHH----hcCCeEEEEEECCccCcccccchh-h--hhhhhhhcccceeeeeeeccc--hHHHHHHhccccCCe
Confidence            3457787766    457899999999999999999743 3  44444444 456777777764  457899999999999


Q ss_pred             EEEEeCCCCceEEE--EeCCCChHHHHHHHHh
Q 019378          141 VLVVDPITGQKMRS--WCGMVQPESLLEDLVP  170 (342)
Q Consensus       141 l~ii~p~tG~~l~~--~~G~~~~~~~l~~L~~  170 (342)
                      +.++-  .|+....  ..|..+.+.|++.|.+
T Consensus        86 i~~f~--~g~~~~~~~y~g~~~~~~l~~fi~k  115 (119)
T d2b5ea4          86 LKIFK--NSDVNNSIDYEGPRTAEAIVQFMIK  115 (119)
T ss_dssp             EEEEE--TTCTTCEEECCSCCSHHHHHHHHHH
T ss_pred             EEEEE--CCEEeeeEEecCCCCHHHHHHHHHH
Confidence            99984  5765543  4688899998876664

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.37  E-value=1.1e-07  Score=70.01  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeC
Q 019378           78 DKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus        78 ~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      +|..+++|+++||.+|+.+...+   +.+.+.......+..++.+  +...+++.|+|.++|+++| +. +|+    +.|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~d--~~~~la~~~~V~~~Pt~~i-~~-~g~----~~G   70 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVM--ENPQKAMEYGIMAVPTIVI-NG-DVE----FIG   70 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESS--SSCCTTTSTTTCCSSEEEE-TT-EEE----CCS
T ss_pred             CceEEEEEECCCCcChHhhhhhc---ccccccccccccccccccc--ccccccccCCceEeeEEEE-EC-CcE----EEC
Confidence            57889999999999999996433   3444445556677666654  3456889999999999864 42 444    559


Q ss_pred             CCChHHHHHHHHhhh
Q 019378          158 MVQPESLLEDLVPFM  172 (342)
Q Consensus       158 ~~~~~~~l~~L~~~l  172 (342)
                      ..+.++|++.|.+.|
T Consensus        71 ~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          71 APTKEALVEAIKKRL   85 (85)
T ss_dssp             SSSSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            899999988877653

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5e-07  Score=72.63  Aligned_cols=101  Identities=8%  Similarity=0.070  Sum_probs=79.7

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChhHHHHHHhCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      .-..+|++.+.  ....+++||+++.+||..|..+.      +-+-++.++    .|.+..+|.  .+...+++.|+|.+
T Consensus        22 ~~~~~~d~~~~--~~~~~vVll~f~a~wCp~C~~~~------pvl~ela~~~~~~~~~~a~Vd~--d~~~~la~~~~V~~   91 (132)
T d2hfda1          22 VSESRLDDWLT--QAPDGVVLLSSDPKRTPEVSDNP------VMIGELLREFPDYTWQVAIADL--EQSEAIGDRFGVFR   91 (132)
T ss_dssp             ECHHHHHHHHH--HCSEEEEEECSCCSCCSSSSCCT------HHHHHHHTTCTTSCEEEEEECH--HHHHHHHHHHTCCS
T ss_pred             cccccHHHHHH--hCCCcEEEEEeeCCCChhHHHHH------HHHHHHHHHccCCcceeEEEEe--cCCHHHHHhhccCc
Confidence            45567777655  34568999999999999999884      445555543    355555554  45678999999999


Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +|+++++.  +|+.+.++.|..+.++|+..|...++.
T Consensus        92 ~PT~~~~~--~G~~v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          92 FPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             CCEEEEEE--TTEEEEEECCCSCHHHHHHHHHHHHSC
T ss_pred             ceeEEEEE--cCcEeeeecCCCCHHHHHHHHHHHhCc
Confidence            99999995  799999999999999999999988874

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=3.1e-07  Score=72.50  Aligned_cols=100  Identities=11%  Similarity=0.137  Sum_probs=66.4

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChhHHHHHHhCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      .-..++++.+..  ...+++||+++..||.+|..+.      +-+-++.++    +|.+..+|.  .....+++.|+|.+
T Consensus        16 v~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~------pvl~eL~~~~~~~~~~~~~Vd~--d~~~~l~~~~~V~~   85 (119)
T d2es7a1          16 VEASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADL--EQSEAIGDRFNVRR   85 (119)
T ss_dssp             CCCC----------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECH--HHHHHHHHTTTCCS
T ss_pred             ecccCHHHHHHh--CCCcEEEEeecCCCCccHHHHH------HHHHHHHHhcCCCceEEEEEEC--CCCHHHHHhcCcCc
Confidence            456777777754  4568999999999999999985      334445443    576666554  45567999999999


Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +|+++++.  +|+.+.++.|..+.+++++.|...++
T Consensus        86 ~Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          86 FPATLVFT--DGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             SSEEEEES--CC----CEESCCCHHHHHHHHHHHHC
T ss_pred             ceEEEEEE--cCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            99999995  79999999999999999999988764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.8e-07  Score=69.78  Aligned_cols=80  Identities=16%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             cHHHHHHHH-HHcCCeEEEEEecC-------CCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhH-----HHH
Q 019378           66 SFEKAKDAA-SVQDKWLLVNLQST-------KEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEG-----KKV  129 (342)
Q Consensus        66 s~~eA~~~A-k~~~K~LlV~l~~~-------~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg-----~~~  129 (342)
                      ++++-.+.- ..++|+++|+|+++       ||.+|..+..      .+.++.   +.++.+..++++....     ..+
T Consensus         8 ~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P------~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           8 GFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEP------VVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             SHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHH------HHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHH------HHHHHHHhcCCceEEEEEECCCCcccchhhhhH
Confidence            344433333 24689999999995       9999999964      444444   4579999999876432     358


Q ss_pred             HHhCCCCCCcEEEEEeCCCCceEE
Q 019378          130 CTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus       130 ~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      ++.|+|.++|+++++.  +|+.+.
T Consensus        82 ~~~~~V~~iPT~i~~~--~g~~l~  103 (119)
T d1woua_          82 RKNLKVTAVPTLLKYG--TPQKLV  103 (119)
T ss_dssp             HHHHCCCSSSEEEETT--SSCEEE
T ss_pred             HHhCCeEEEEEEEEEE--CCeEEe
Confidence            8899999999999987  466553

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.3e-07  Score=72.68  Aligned_cols=97  Identities=12%  Similarity=0.193  Sum_probs=68.3

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh---ccEEEEEeecCChhHHHHHHhCCCCCCc
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS---TNFIFWQVYDDTSEGKKVCTYYKLDSIP  139 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~---~~FV~w~~~~~s~eg~~~~~~y~v~~~P  139 (342)
                      -..+|+++++    .+|++||+|+++||..|+.|...+   ..+.+.+.   .++++..+|.+.  ...++..|++.+||
T Consensus        13 ~~~~f~~~l~----~~k~vlV~Fya~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P   83 (120)
T d1meka_          13 RKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATE--ESDLAQQYGVRGYP   83 (120)
T ss_dssp             CTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTT--CCSSHHHHTCCSSS
T ss_pred             CHHHHHHHHh----cCCcEEEEEECCCcCCccccchhh---hhhcccccccccceeeecccccc--chhHHHHhCCccCC
Confidence            3567777763    579999999999999999885322   12333332   246666666654  34678899999999


Q ss_pred             EEEEEeCCCCceE--EEEeCCCChHHHHHHHHh
Q 019378          140 VVLVVDPITGQKM--RSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       140 ~l~ii~p~tG~~l--~~~~G~~~~~~~l~~L~~  170 (342)
                      +++++..  |+.+  ....|..+.+.|++.|.+
T Consensus        84 t~~~~~~--G~~~~~~~~~g~~~~~~l~~fi~~  114 (120)
T d1meka_          84 TIKFFRN--GDTASPKEYTAGREADDIVNWLKK  114 (120)
T ss_dssp             EEEEEES--SCSSSCEECCCCSSHHHHHHHHHT
T ss_pred             eEEEEEC--CeEeeeEEecCCCCHHHHHHHHHH
Confidence            9999863  5443  456788888888765554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.24  E-value=2.5e-06  Score=68.44  Aligned_cols=88  Identities=11%  Similarity=0.030  Sum_probs=62.8

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCCh--------------------------h
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTS--------------------------E  125 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~--------------------------e  125 (342)
                      -++|+++|+|.++||..|....      +.+.++.++    .+.+..+..+..                          .
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   94 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSEL------GQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDN   94 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTH------HHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECT
T ss_pred             hCCCEEEEEEECCCCccccccC------cchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccccccccc
Confidence            5689999999999999998632      233343332    333333332110                          0


Q ss_pred             HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          126 GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       126 g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      ...++..|++..+|+++|||+ .|+++.+..|.++.+++...|..
T Consensus        95 ~~~~~~~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1          95 GGTIAQSLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             TCHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHC
T ss_pred             chHHHHHcCCCccCEEEEECC-CCEEEEEEECCCCHHHHHHHHHH
Confidence            125678999999999999996 79999999999999888776654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=4.8e-06  Score=66.31  Aligned_cols=87  Identities=13%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC-hh-H------------------HHHHHhCCCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT-SE-G------------------KKVCTYYKLD  136 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s-~e-g------------------~~~~~~y~v~  136 (342)
                      ++|+++|+|.++||..|......+-.  ...++-+.++.++.++.+. .+ .                  ..++..|++.
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  101 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMAN--QYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  101 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHH--HHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEEeeccccceeeccccccc--ccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcc
Confidence            68999999999999999876533211  1122223456666655432 22 1                  1355788999


Q ss_pred             CCcEEEEEeCCCCceEEEEeCCCChHHHHH
Q 019378          137 SIPVVLVVDPITGQKMRSWCGMVQPESLLE  166 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~  166 (342)
                      .+|+++|||+ .|.++.++.|.++.+.+-+
T Consensus       102 ~~P~~~liD~-~G~i~~~~~G~~~~~~~~~  130 (137)
T d1st9a_         102 PLPTTFLINP-EGKVVKVVTGTMTESMIHD  130 (137)
T ss_dssp             SSCEEEEECT-TSEEEEEEESCCCHHHHHH
T ss_pred             ccceEEEECC-CCEEEEEEECCCCHHHHHH
Confidence            9999999997 7999999999988766533

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.07  E-value=7.9e-06  Score=64.21  Aligned_cols=103  Identities=13%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhh--hhccc-CCHHHHHHHhc-cEEEEEeecCChhHHHHHHhCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHML--NRDTW-ANEAVSQTIST-NFIFWQVYDDTSEGKKVCTYYKLDS  137 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f--~rdvl-~~~~V~~~i~~-~FV~w~~~~~s~eg~~~~~~y~v~~  137 (342)
                      +-..+|++++.    +.+.+||+|+.+||..|..+  |.... .-+.+.+.+++ .+.+-.+|.+.  ...++..|+|.+
T Consensus        16 L~~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~--~~~l~~~~~I~~   89 (124)
T d1a8ya1          16 VNAKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK--DAAVAKKLGLTE   89 (124)
T ss_dssp             CCTTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT--SHHHHHTTTCCS
T ss_pred             CCHHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec--ccchhhcccccc
Confidence            34567888773    56889999999999855322  11100 01223333433 47787777654  356899999999


Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      ||+|.++.  +|+.+ ...|..+.+.|+..|...++
T Consensus        90 yPTi~~f~--~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          90 EDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TTCEEEEE--SSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             CCcEEEec--cCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            99999987  47765 57899999999998888775

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=1.8e-05  Score=63.39  Aligned_cols=96  Identities=13%  Similarity=0.048  Sum_probs=64.4

Q ss_pred             HHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC------hh-H-----------------
Q 019378           71 KDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT------SE-G-----------------  126 (342)
Q Consensus        71 ~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s------~e-g-----------------  126 (342)
                      ...+...+|+++|+|.++||..|+..-..+   ..+.+-.++.+.++.++.+.      .+ .                 
T Consensus        22 ~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l---~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~   98 (143)
T d2b5xa1          22 TREQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDS   98 (143)
T ss_dssp             CHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECS
T ss_pred             ecHHHhCCCEEEEEEEcCCCcchhhhhhhh---hhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccC
Confidence            445566789999999999999998753221   11222233344444443321      11 1                 


Q ss_pred             -HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          127 -KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       127 -~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                       ..+++.|++..+|+++|||+ +|.++.+..|..+.+.+.+.|.+
T Consensus        99 ~~~~~~~~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          99 DHALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             SCHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHH
T ss_pred             ccchHHHcCCCcCCEEEEECC-CCEEEEEEECCCCHHHHHHHHHh
Confidence             13456888999999999997 79999999998888877766543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.03  E-value=7e-06  Score=68.33  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=60.9

Q ss_pred             HHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeec--CChh-H-----------------------HH
Q 019378           75 SVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYD--DTSE-G-----------------------KK  128 (342)
Q Consensus        75 k~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~--~s~e-g-----------------------~~  128 (342)
                      .-.+|++||+|..+||..|......+  +.-...+-...+.+..+.+  ++.+ .                       ..
T Consensus        53 ~~kGK~vll~F~a~wC~~C~~~~~~l--~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (176)
T d1jfua_          53 DFRGKTLLVNLWATWCVPCRKEMPAL--DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD  130 (176)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred             HhCCCEEEEEeccCcccchHHHHHhh--hhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHH
Confidence            34789999999999999997765433  1111222233333333333  2222 2                       22


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhhh
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPFM  172 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~l  172 (342)
                      +...|++..+|+.+|||. +|.++.++.|.+  +.+++++.|...+
T Consensus       131 ~~~~~~v~~~P~~~lID~-~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         131 LKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             HHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             HhhhccCCCCCeEEEEcC-CCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            334567788999999996 799999999975  4567777776543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.01  E-value=5.4e-06  Score=60.82  Aligned_cols=81  Identities=14%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             EEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCCh
Q 019378           82 LVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQP  161 (342)
Q Consensus        82 lV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~  161 (342)
                      ++.|+++||..|+.+...+   +++.+-.+.++.+..+|.+  +...++..|+|.++|++++ +   |+.  +..|..++
T Consensus         5 v~~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~~-~---~~~--~~~G~~~~   73 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIM--VDREKAIEYGLMAVPAIAI-N---GVV--RFVGAPSR   73 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTT--TCGGGGGGTCSSCSSEEEE-T---TTE--EEECSSCC
T ss_pred             EEEEECCCCcchHHHHHHH---hhhcccccccccccccccc--cchhhHHhcCceEeCEEEE-C---CcE--EEEcCCCH
Confidence            5568999999999996533   4555555667778776665  4667899999999999765 3   442  46799999


Q ss_pred             HHHHHHHHhhhh
Q 019378          162 ESLLEDLVPFMD  173 (342)
Q Consensus       162 ~~~l~~L~~~l~  173 (342)
                      +.|.+.|...++
T Consensus        74 ~~l~~~i~~~l~   85 (85)
T d1nhoa_          74 EELFEAINDEME   85 (85)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhC
Confidence            999998887653

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.01  E-value=5.4e-05  Score=56.71  Aligned_cols=81  Identities=10%  Similarity=0.108  Sum_probs=59.4

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEEe
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~  156 (342)
                      ++.+.+++|+++||.+|+.+... |  +.+. ..+.++.+..+|.+.  ...++..|+|.++|++++    +|+.+  ..
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~-~--~~~a-~~~~~i~~~~vd~~~--~~~l~~~~~I~~vPt~~~----ng~~~--~~   81 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQA-L--NLMA-VLNPRIKHTAIDGGT--FQNEITERNVMGVPAVFV----NGKEF--GQ   81 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHH-H--HHHH-HHCTTEEEEEEETTT--CHHHHHHTTCCSSSEEEE----TTEEE--EE
T ss_pred             CCCeEEEEEECCCCcchHHHHHH-H--HHHH-HhCCceEEEEEeccc--chHHHhhcccccccEEEE----CCEEE--Ee
Confidence            45677888999999999998532 2  1222 234567777766654  567899999999999854    57765  46


Q ss_pred             CCCChHHHHHHHH
Q 019378          157 GMVQPESLLEDLV  169 (342)
Q Consensus       157 G~~~~~~~l~~L~  169 (342)
                      |..+.++|++.|.
T Consensus        82 G~~~~~~l~~~le   94 (96)
T d1hyua4          82 GRMTLTEIVAKVD   94 (96)
T ss_dssp             SCCCHHHHHHHHC
T ss_pred             cCCCHHHHHHHHh
Confidence            9999999988764

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=97.98  E-value=1.3e-05  Score=64.48  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=53.4

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhH----------------------HHHHHh
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEG----------------------KKVCTY  132 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg----------------------~~~~~~  132 (342)
                      =+||+++|+|.++||.+|......+  .+-..++- +.+|+++.++.+....                      ..+.+.
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l--~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVL--AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT  103 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHH--HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             hCCCEEEEEeChhhCccchhhhHHH--HHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHH
Confidence            3689999999999999998875331  01112222 2368777777654321                      235678


Q ss_pred             CCCCCCcEEEEEeCCCCceEEE
Q 019378          133 YKLDSIPVVLVVDPITGQKMRS  154 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l~~  154 (342)
                      |++..+|+++|||+.+|.++..
T Consensus       104 y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         104 FGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCcCCEEEEEECCCCEEEee
Confidence            9999999999999866877643

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.97  E-value=1.6e-05  Score=64.24  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             HHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHH---Hh--ccEEEEEeecCChh---------------------H-
Q 019378           74 ASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQT---IS--TNFIFWQVYDDTSE---------------------G-  126 (342)
Q Consensus        74 Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~---i~--~~FV~w~~~~~s~e---------------------g-  126 (342)
                      +.=+||++||||..+||.+|..+.      +.+.++   ..  .+|+++.++.+...                     + 
T Consensus        24 s~l~GK~vll~FwAtWC~pC~~~~------p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~   97 (144)
T d1i5ga_          24 PSLAGKTVFFYFSASWCPPSRAFT------PQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGM   97 (144)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHH
T ss_pred             HHcCCCEEEEEEEecCCchHhhhh------HhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHH
Confidence            344799999999999999999874      333333   22  26777776665322                     1 


Q ss_pred             HHHHHhCCCCCCcEEEEEeCCCCceEE
Q 019378          127 KKVCTYYKLDSIPVVLVVDPITGQKMR  153 (342)
Q Consensus       127 ~~~~~~y~v~~~P~l~ii~p~tG~~l~  153 (342)
                      ..+++.|++..+|+++|||+.+|+++.
T Consensus        98 ~~l~~~y~v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          98 EFLTTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             HHHHHHCCCCCcCEEEEEeCCCCEEEe
Confidence            235778999999999999986688763

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.97  E-value=2.5e-05  Score=61.69  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=58.9

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc----cEEEEEeecCChhH--------------------HHHHH
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST----NFIFWQVYDDTSEG--------------------KKVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~----~FV~w~~~~~s~eg--------------------~~~~~  131 (342)
                      -+||++||+|.++||..|....      +.+.++..+    .+|+... .+..+.                    ..+..
T Consensus        23 ~~Gk~vll~fwa~wC~~C~~~~------p~l~~l~~~~~~~~~v~v~~-~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~   95 (134)
T d1zzoa1          23 LLGKPAVLWFWAPWCPTCQGEA------PVVGQVAASHPEVTFVGVAG-LDQVPAMQEFVNKYPVKTFTQLADTDGSVWA   95 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEEC-SSCHHHHHHHHHHTTCTTSEEEECTTCHHHH
T ss_pred             hCCCEEEEEecccccCcccccc------hhhHHHHhhhcccccccccc-cccchhHHHHHHhcCCcceeEEeeccchHHH
Confidence            3589999999999999997753      444444432    2333221 112111                    24567


Q ss_pred             hCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          132 YYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       132 ~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                      .|++..+|+++|||+ .|.+ ..+.|..+.+++.+.|..
T Consensus        96 ~~~v~~~P~~~iiD~-~G~i-~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1          96 NFGVTQQPAYAFVDP-HGNV-DVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             HTTCCSSSEEEEECT-TCCE-EEEESCCCHHHHHHHHHH
T ss_pred             hcCCCccCeEEEECC-CCeE-EEEECCCCHHHHHHHHHh
Confidence            889999999999997 6875 456798999988777654

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=7.6e-06  Score=65.63  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             cccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhHHHHHHhCCCCCC
Q 019378           62 MFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEGKKVCTYYKLDSI  138 (342)
Q Consensus        62 ~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg~~~~~~y~v~~~  138 (342)
                      +-..+|++.+.   ..+|++||+|+++||..|..|.. +|.  .+.+.+.+   .+.+..+|.+.    .++..|+|.+|
T Consensus        17 l~~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~v~~~~~d~~~----~~~~~~~v~~~   86 (140)
T d2b5ea1          17 LVGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAP-TYQ--ELADTYANATSDVLIAKLDHTE----NDVRGVVIEGY   86 (140)
T ss_dssp             ECTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHHHHHCSSCEEEEEEGGG----CCCSSCCCSSS
T ss_pred             ecCcCHHHHHh---cCCCCEEEEEEeccCcccchhHH-HHH--HHHHHHhccccceEEEeeeccc----hhccccccccC
Confidence            34568888775   45789999999999999999953 443  34333332   45555555433    35789999999


Q ss_pred             cEEEEEeCCCCceEEE--EeCCCChHHHHHHHHh
Q 019378          139 PVVLVVDPITGQKMRS--WCGMVQPESLLEDLVP  170 (342)
Q Consensus       139 P~l~ii~p~tG~~l~~--~~G~~~~~~~l~~L~~  170 (342)
                      |++.++.  .|+.+..  ..|..+.+.|+..|..
T Consensus        87 Ptl~~f~--~g~~~~~~~y~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1          87 PTIVLYP--GGKKSESVVYQGSRSLDSLFDFIKE  118 (140)
T ss_dssp             SEEEEEC--CTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred             CeEEEEE--CCEEcceeEeCCCCCHHHHHHHHHH
Confidence            9999986  4665533  4688899988776554

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=2e-05  Score=62.44  Aligned_cols=87  Identities=10%  Similarity=0.038  Sum_probs=59.0

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCCh--hH------------------HHHHHhCC
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTS--EG------------------KKVCTYYK  134 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~--eg------------------~~~~~~y~  134 (342)
                      +||+++|+|.++||..|......      +.++..  .+..+..++.+..  +.                  ..+++.|+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~------l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~   96 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPS------LSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN   96 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT
T ss_pred             CCCEEEEEEeecccCCceecchh------HHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcC
Confidence            58999999999999999875433      333322  2344444443321  11                  13567899


Q ss_pred             CCCCcEEEEEeCCCCceEE--EEeCCCChHHHHHHHHh
Q 019378          135 LDSIPVVLVVDPITGQKMR--SWCGMVQPESLLEDLVP  170 (342)
Q Consensus       135 v~~~P~l~ii~p~tG~~l~--~~~G~~~~~~~l~~L~~  170 (342)
                      +..+|+++|||+ .|++..  ...|..+.+++.+.|..
T Consensus        97 v~~~P~~~lid~-~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          97 VPWQPAFVFYRA-DGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             CCSSSEEEEECT-TSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCcCCEEEEEeC-CCeEEEEeccCCCCCHHHHHHHHHc
Confidence            999999999997 687643  34567889999887754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.78  E-value=2.5e-06  Score=65.96  Aligned_cols=93  Identities=12%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc-c----EEEEEeecCChhHHHHHHhCCCCCC
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST-N----FIFWQVYDDTSEGKKVCTYYKLDSI  138 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~-~----FV~w~~~~~s~eg~~~~~~y~v~~~  138 (342)
                      ..+|++-+   ...+|++||+|+.+||..|+.|.. +|  +++.+.+.. +    +++...+..     ..+..|+|.+|
T Consensus         9 ~~nF~~~v---~~~~k~vlV~fya~wC~~Ck~~~p-~~--~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~   77 (116)
T d2djja1           9 AKNYNEIV---LDDTKDVLIEFYAPWCGHCKALAP-KY--EELGALYAKSEFKDRVVIAKVDAT-----ANDVPDEIQGF   77 (116)
T ss_dssp             TTTTTTSS---SCTTSCEEEEEECSSCTTHHHHHH-HH--HHHHHHHTTSSCTTSSEEEEEETT-----TSCCSSCCSSS
T ss_pred             cCCHHHHH---hcCCCCEEEEEEecccccccccch-HH--HHHHHHHhcccccceeEEEecccc-----hhhhcccccCC
Confidence            44554432   356799999999999999999964 33  445555543 2    233322322     23457899999


Q ss_pred             cEEEEEeCCCCce--EEEEeCCCChHHHHHHHH
Q 019378          139 PVVLVVDPITGQK--MRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       139 P~l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~  169 (342)
                      |+|.++.  .|+.  .....|..+.+.|++.|.
T Consensus        78 Pti~~f~--~g~~~~~~~~~g~~~~~~l~~fi~  108 (116)
T d2djja1          78 PTIKLYP--AGAKGQPVTYSGSRTVEDLIKFIA  108 (116)
T ss_dssp             SEEEEEC--SSCTTSCCCCCCCSCHHHHHHHHH
T ss_pred             CEEEEEE--CCccCceEEecCCCCHHHHHHHHH
Confidence            9999885  3443  234568888888876444

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.73  E-value=9.1e-05  Score=58.93  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=51.9

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH-h-ccEEEEEeecCCh----------------------hHHHHHHh
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI-S-TNFIFWQVYDDTS----------------------EGKKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i-~-~~FV~w~~~~~s~----------------------eg~~~~~~  132 (342)
                      +||+++|||.++||.+|......+   .++.+-+ . .++++..++.+..                      ....+++.
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l---~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  101 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH  101 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH
T ss_pred             CCCEEEEEeccccccccccccchh---HHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHH
Confidence            689999999999999998875332   1222222 2 2566666665532                      12357789


Q ss_pred             CCCCCCcEEEEEeCCCCceE
Q 019378          133 YKLDSIPVVLVVDPITGQKM  152 (342)
Q Consensus       133 y~v~~~P~l~ii~p~tG~~l  152 (342)
                      |++..+|+++|||+.+|.++
T Consensus       102 y~v~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_         102 FNVESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             TTCCSSSEEEEEETTTCCEE
T ss_pred             cCCCcCCEEEEEeCCCCEEE
Confidence            99999999999998667765

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=0.00015  Score=56.39  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=68.6

Q ss_pred             ccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHH-HHHHhccEEEEEeecCC---hhHHHHHHhCCC--C
Q 019378           63 FNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAV-SQTISTNFIFWQVYDDT---SEGKKVCTYYKL--D  136 (342)
Q Consensus        63 f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V-~~~i~~~FV~w~~~~~s---~eg~~~~~~y~v--~  136 (342)
                      -..+|++.+    .+.|.+||.|+.+||..|+.   ..|..-.- ..-...+.++-.++++.   .+...++..|++  .
T Consensus         8 ~~~nFd~~v----~~~~~~lV~Fya~wC~~ck~---p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           8 DELSFEKTV----ERFPYSVVKFDIASPYGEKH---EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             CTTTHHHHH----TTSSEEEEEEEESSCCSHHH---HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ChHhHHHHH----hcCCcEEEEEECCCCCcccC---HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            345677766    56799999999999999983   22222110 11123478888888755   456789999988  5


Q ss_pred             CCcEEEEEeCCCCceEE--EEeCCCChHHHHHHHHhhh
Q 019378          137 SIPVVLVVDPITGQKMR--SWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~l~--~~~G~~~~~~~l~~L~~~l  172 (342)
                      +||++.++.+. +....  ...|..+.+.|++.|.+-.
T Consensus        81 ~~PTi~~f~~g-~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          81 NFPSIFLFKGN-ADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             SCCEEEEESSS-SSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCcEEEEeCC-cccccccccCCCCCHHHHHHHHHHhc
Confidence            79999999752 22222  3457788888877665543

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00071  Score=56.59  Aligned_cols=95  Identities=16%  Similarity=0.165  Sum_probs=62.3

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCC--------hhH-------------------HH
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDT--------SEG-------------------KK  128 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s--------~eg-------------------~~  128 (342)
                      -.+|+++|+|.++||.+|+..-..+   ..+.+-.++++.++.++.++        .+.                   ..
T Consensus        30 ~kGk~vvl~FwatwCp~C~~~~p~l---~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~  106 (187)
T d2cvba1          30 FHEPLLAVVFMCNHCPYVKGSIGEL---VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE  106 (187)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHH---HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred             hCCCeEEEEEeCCCCccchhhhhhh---hhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhh
Confidence            3679999999999999998653221   12333334566666665422        111                   13


Q ss_pred             HHHhCCCCCCcEEEEEeCCCCceEEEEeCC----------CChHHHHHHHHhhhhcCC
Q 019378          129 VCTYYKLDSIPVVLVVDPITGQKMRSWCGM----------VQPESLLEDLVPFMDGGP  176 (342)
Q Consensus       129 ~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~----------~~~~~~l~~L~~~l~~~~  176 (342)
                      ++..|++..+|+++|||+ +|+++.+  |.          .+..++...|...+....
T Consensus       107 ~~~~~~v~~~P~~~liD~-~G~i~y~--G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~  161 (187)
T d2cvba1         107 VAKAYRALRTPEVFLFDE-RRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRGEE  161 (187)
T ss_dssp             HHHHTTCCEESEEEEECT-TCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             hcccccccceeeEEEEcC-CCeEEEE--eeecCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence            467899999999999997 7888743  43          233467777777776543

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.0014  Score=48.97  Aligned_cols=80  Identities=10%  Similarity=0.169  Sum_probs=61.5

Q ss_pred             CCCeeEEEEECCC---CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec---CCCCccccCCCcCCChhhcCCc-
Q 019378          261 RSLLCRVGVRLPD---GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA---IPGATKSLDYDSKLTFEDSGLA-  333 (342)
Q Consensus       261 ~~~~~~i~iRlP~---G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~---fPr~~~~l~~~~~~Tl~e~gL~-  333 (342)
                      ....++|.|++|+   ++.+.+++..+.||..|-.-|... .+.+...-+|+..   .|.....+ ++.+.||.+.|+. 
T Consensus         6 s~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~-~gip~~~qrL~y~~~~~~~~~~~l-~~d~~tL~~YgI~d   83 (97)
T d1wjna_           6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRL-LKVPVSELLLSYESSKMPGREIEL-ENDLQPLQFYSVEN   83 (97)
T ss_dssp             SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTT-TTCCTTTCEEEEECTTSCSCEEEC-CCSSSBSGGGTCCT
T ss_pred             CCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHH-HCcChHHeEEEecCCCCCccccee-cCCCcCHhhccCCC
Confidence            4568999999876   788999999999999999999875 4666667777642   22221123 4679999999998 


Q ss_pred             CceEEEEeC
Q 019378          334 NAMISVTWE  342 (342)
Q Consensus       334 ~~~l~v~w~  342 (342)
                      +.+|+|.|.
T Consensus        84 g~~I~V~~~   92 (97)
T d1wjna_          84 GDCLLVRWS   92 (97)
T ss_dssp             TCEEEEECC
T ss_pred             CCEEEEEeC
Confidence            688999983

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.00042  Score=59.53  Aligned_cols=98  Identities=13%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             cHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEeecCChhHHHHHHhCCCCCCcEEEE
Q 019378           66 SFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQVYDDTSEGKKVCTYYKLDSIPVVLV  143 (342)
Q Consensus        66 s~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~i  143 (342)
                      .|.+++..+ ..+.|++|.|+.+||..|..|+      +.+..+-..  +.-|..++.+.   ..++..|++..+|+|++
T Consensus       109 ~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~------~~l~~lA~~~~~vkF~ki~~~~---~~~~~~~~i~~lPtl~~  178 (217)
T d2trcp_         109 QFLETIEKE-QKVTTIVVNIYEDGVRGCDALN------SSLECLAAEYPMVKFCKIRASN---TGAGDRFSSDVLPTLLV  178 (217)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHTTCTTSEEEEEEHHH---HTCSTTSCGGGCSEEEE
T ss_pred             HHHHHHHhc-CCCCeEEEEEEcCCCCChhhhh------hhHHHHhhhcccceEEEEcccc---chhHHhCCCCCCCeEEE
Confidence            366665433 3456999999999999999996      344555544  34455555432   22567899999999999


Q ss_pred             EeCCCCceEEEEeCCCC---hHHHHHHHHhhhhcC
Q 019378          144 VDPITGQKMRSWCGMVQ---PESLLEDLVPFMDGG  175 (342)
Q Consensus       144 i~p~tG~~l~~~~G~~~---~~~~l~~L~~~l~~~  175 (342)
                      +-  +|+++.++.|..+   .+-....|..+|..+
T Consensus       179 yk--~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         179 YK--GGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EE--CCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            96  6999999988431   111233455666654

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.0033  Score=47.12  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             CCCCCCCCCCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcC
Q 019378          252 ILPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSG  331 (342)
Q Consensus       252 ~l~~EP~~~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~g  331 (342)
                      .++|+...+....+.|.|+.-.|+.+.-....++||.+|-.=|.... +.+....+|+..  .+.  |  +.+.||++.|
T Consensus        16 ~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~dyg   88 (100)
T d1uh6a_          16 SLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQT-GTRWNKIVLKKW--YTI--F--KDHVSLGDYE   88 (100)
T ss_dssp             SSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHH-CCCGGGCEEEET--TEE--C--CSSCBHHHHT
T ss_pred             cccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHH-CCCcceEEEEEE--eec--c--cCcCCHHHcC
Confidence            34455555666788999999999999999999999999999998764 667788888875  332  4  6689999999


Q ss_pred             Cc-CceEEEEeC
Q 019378          332 LA-NAMISVTWE  342 (342)
Q Consensus       332 L~-~~~l~v~w~  342 (342)
                      +. +++|.+-|.
T Consensus        89 I~~GstI~L~~~  100 (100)
T d1uh6a_          89 IHDGMNLELYYQ  100 (100)
T ss_dssp             CCTTEEEEEECC
T ss_pred             CCCCCEEEEEEC
Confidence            99 577888774

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0034  Score=45.66  Aligned_cols=73  Identities=22%  Similarity=0.138  Sum_probs=60.5

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ....+|-||.++|+.+.-....+++|..|-.-|... .+.+....+|+..  .+.  |  +.+.||.+.|+. +++|++.
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-~gip~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~stl~l~   77 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-QGLPKKQQQLEFQ--GQV--L--QDWLGLGIYGIQDSDTLILS   77 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHH-HCcChHHeEEEee--ceE--c--CCCCcHHHcCCCCCCEEEEE
Confidence            457889999999999999999999999999999876 4777888899875  443  5  458999999998 5667665


Q ss_pred             e
Q 019378          341 W  341 (342)
Q Consensus       341 w  341 (342)
                      +
T Consensus        78 ~   78 (87)
T d1wh3a_          78 K   78 (87)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.90  E-value=0.0014  Score=52.62  Aligned_cols=92  Identities=10%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             HHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh----ccEEEEEeecCChhHH-------------------HHH
Q 019378           75 SVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS----TNFIFWQVYDDTSEGK-------------------KVC  130 (342)
Q Consensus        75 k~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~----~~FV~w~~~~~s~eg~-------------------~~~  130 (342)
                      ..++|+++|+|+ +.||+.|..-.      +.+.++..    ....++.+..++++..                   .++
T Consensus        27 ~~~gk~vvl~f~~~~~cp~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  100 (160)
T d2cx4a1          27 LKRGRPAVLIFFPAAFSPVCTKEL------CTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVI  100 (160)
T ss_dssp             HTTSSCEEEEECSCTTCHHHHHHH------HHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHH
T ss_pred             hhCCCEEEEEecccccCCchhhhh------hhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchH
Confidence            346899999998 78999997643      23333332    3567777777776543                   345


Q ss_pred             HhCCC----------CCCcEEEEEeCCCCceEEEEeCC-----CChHHHHHHHHhhhh
Q 019378          131 TYYKL----------DSIPVVLVVDPITGQKMRSWCGM-----VQPESLLEDLVPFMD  173 (342)
Q Consensus       131 ~~y~v----------~~~P~l~ii~p~tG~~l~~~~G~-----~~~~~~l~~L~~~l~  173 (342)
                      +.|++          ...|+++|||+ .|.+..++.+.     .+.+++++.|..++.
T Consensus       101 ~~~gv~~~~~~~~~~~~~~~~flId~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         101 KLYNVYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HHTTCEEEEETTEEEEECCEEEEECT-TSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             HHcCccccccccccccceeeEEEEcC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence            56765          24689999997 79988877652     356788888777654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.004  Score=43.96  Aligned_cols=70  Identities=21%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +..+|-||.++|+.+.-....++||..|-.-+.... |.++...+|+..  ++.  |  +.+.||++.|+. +++|.+
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~qrL~~~--gk~--L--~d~~tL~~y~I~~~sti~l   72 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE-GVQDDLFWLTFE--GKP--L--EDQLPLGEYGLKPLSTVFM   72 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHh-cCChhHeEEEEC--CeE--C--CCCCcHHHcCCCCCCEEEE
Confidence            357899999999999999999999999999998864 677788888875  443  5  558999999999 566654

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.003  Score=45.19  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=57.9

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .++|.||+.+|+.+.-....++||..|-.-|... .+.+....+|+..  .+.  |  +.+.||.+.|+. +++|.+.
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~-~~ip~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~sti~lv   73 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-EGVEPGSQRWFFS--GRP--L--TDKMKFEELKIPKDYVVQVI   73 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-TCCCSTTCEEEET--TEE--C--CTTSHHHHCCCSSSCEEEEE
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHH-hCCCcccEEEEEC--ceE--c--CCCCcHHHcCCCCCCEEEEE
Confidence            4899999999999999999999999999999876 4677788888865  443  5  458999999999 5666653

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.70  E-value=0.0051  Score=43.03  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=55.4

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .|.||.++|+.+.-....+++|..|-.-+.... |.++...+|+..  .+.  |  ..+.||++.|+. +++|.+
T Consensus         2 ~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~-gi~~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~sti~l   69 (73)
T d1bt0a_           2 LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKE-GIPPVQQRLIYA--GKQ--L--ADDKTAKDYNIEGGSVLHL   69 (73)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-CCChHHEEEEEC--CeE--c--CCCCcHHHcCCCCCCEEEE
Confidence            588999999999999999999999999998864 677888898874  443  5  458999999998 566654

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0068  Score=46.61  Aligned_cols=69  Identities=17%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC-------CCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE-------GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-  333 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~-------~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-  333 (342)
                      ++.+.|.|++.+|+...-.|..++||..|-.-|...++       +.++...+|+..  .+.  |  +.+.||+++++. 
T Consensus        14 ~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~--Gk~--L--~D~~tL~~~~i~~   87 (116)
T d1wgha_          14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRF--L--HGNVTLGALKLPF   87 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEE--E--CSSCBTTTTTCCS
T ss_pred             CCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEEC--CEE--e--cCCCCHHHcCCCC
Confidence            46799999999999999999999999999999965432       345678899875  443  5  568999999998 


Q ss_pred             Cce
Q 019378          334 NAM  336 (342)
Q Consensus       334 ~~~  336 (342)
                      +++
T Consensus        88 g~~   90 (116)
T d1wgha_          88 GKT   90 (116)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            444

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.67  E-value=0.007  Score=45.33  Aligned_cols=68  Identities=21%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             CCeeEEEEECCCCceE-EEEeCCCCchHHHHHHHHhhcC----CCC--CcCeEEEecCCCCccccCCCcCCChhhcCCcC
Q 019378          262 SLLCRVGVRLPDGRRM-QRNFLRTDPIQLLWSYCYSQLE----GSE--MKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN  334 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~-~rrF~~~~~l~~l~~fv~~~~~----~~~--~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~  334 (342)
                      .+...|.||+.+|+.+ .-+|..++||..|-.-|...++    +.+  ....+|+..  ++.  |  +.+.||+|+++.+
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~--Gk~--L--~D~~tL~dy~i~~   78 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKV--L--ENSKTVKDYRSPV   78 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEE--C--CTTSBGGGGSCCT
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEEC--CeE--e--cCCCCHHHcCCCC
Confidence            4568899999999987 5999999999999999987532    332  446788875  443  4  6689999999985


Q ss_pred             c
Q 019378          335 A  335 (342)
Q Consensus       335 ~  335 (342)
                      +
T Consensus        79 g   79 (101)
T d1se9a_          79 S   79 (101)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0045  Score=46.14  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCCceEEEE
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSW  155 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG~~l~~~  155 (342)
                      ...-+.++.++.+||..|+.+.. +|      +-+...|-+.-++++..+...+.+.|.+. .|.|+| +   |+.+  +
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~-~L------~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~i-d---g~~~--~   78 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKE-VL------QPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHL-N---GQFL--M   78 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHH-HT------STTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEE-S---SSEE--E
T ss_pred             CCCCCEEEEEECCCCCChHHHHH-HH------HHhhhhcceEEEecccccCHHHHHHhccc-CCceee-c---CceE--E
Confidence            34567899999999999999842 11      11223344444566666677899999986 897654 3   6654  5


Q ss_pred             eCCCChHHHHHHHHhhh
Q 019378          156 CGMVQPESLLEDLVPFM  172 (342)
Q Consensus       156 ~G~~~~~~~l~~L~~~l  172 (342)
                      .|.++.+.|.+.|....
T Consensus        79 ~g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          79 MHRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             ESSCCHHHHHHHHHSSS
T ss_pred             eCCCCHHHHHHHHHHHh
Confidence            57899999888776543

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.0041  Score=50.55  Aligned_cols=91  Identities=13%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-----------------------HHHH
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-----------------------KVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-----------------------~~~~  131 (342)
                      -.|||++|+|+ ..||+.|..-...+  .+...++-+.+..++.++.++.+..                       .+++
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~--~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~  119 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAF--SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ  119 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHH
T ss_pred             HCCCeEEEEEecCCCCcccccccccc--ccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHH
Confidence            35789999998 78898887543221  1222334445788888888875542                       3456


Q ss_pred             hCCC-----CCCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          132 YYKL-----DSIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       132 ~y~v-----~~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      .|++     ...|+.+|||+ .|.+...+.+..    ..+++++.|.
T Consensus       120 ~ygv~~~~~~~~r~~fvID~-~G~I~~~~~~~~~~~~~~~evl~~l~  165 (169)
T d2bmxa1         120 AAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLD  165 (169)
T ss_dssp             HHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HcCCCccCCccceeEEEEcC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence            7776     56789999997 688876654422    4556666554

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0064  Score=47.87  Aligned_cols=37  Identities=8%  Similarity=0.183  Sum_probs=31.7

Q ss_pred             CcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhcC
Q 019378          138 IPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGG  175 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~~  175 (342)
                      .|.++|||| .|+++..+.+..+++++.+.|...|..|
T Consensus       124 ~~~~~LId~-~G~i~~~~~~~~~~~~i~~~I~~~lk~~  160 (160)
T d1wp0a1         124 TIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  160 (160)
T ss_dssp             CCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             cceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            368899998 7999999988889999999999888653

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.38  E-value=0.0058  Score=49.52  Aligned_cols=89  Identities=11%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .|||++|+|+ .+||+.|..-...+  .+...++-+..+.+++++.++.+..                          .+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l--~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  109 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQF--SDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAI  109 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHH
T ss_pred             CCCeEEEEEcccccccccchhhHHH--HHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHH
Confidence            5799999998 88999998743221  1223334455899999999876432                          24


Q ss_pred             HHhCCC------CCCcEEEEEeCCCCceEEEEeCC----CChHHHHHHH
Q 019378          130 CTYYKL------DSIPVVLVVDPITGQKMRSWCGM----VQPESLLEDL  168 (342)
Q Consensus       130 ~~~y~v------~~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L  168 (342)
                      +..|++      ..+|+.+|||+ .|.+...+.+.    -+.+++|..|
T Consensus       110 ~~~y~v~~~~~g~~~r~tfvID~-~G~Ir~~~~~~~~~~~~~~evL~~l  157 (167)
T d1e2ya_         110 ARAYGVLDEDSGVAYRGVFIIDP-NGKLRQIIINDMPIGRNVEEVIRLV  157 (167)
T ss_dssp             HHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred             HHHcCCCcccCCCceeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHH
Confidence            456666      23688999998 68886664332    2457776655

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.011  Score=42.59  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=58.1

Q ss_pred             CCCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          260 DRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       260 ~~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      +.+.+++|.|+.++|+ ..-....+++|..|-.-|.... +.++...+|+..  .+.  |  +.+.||+++|+. +++|.
T Consensus         3 ~~~~~i~I~Vkt~~~~-~~~~V~~~~tV~~lK~~i~~~~-gi~~~~qrL~~~--Gk~--L--~D~~tL~~y~i~~gsti~   74 (84)
T d1yqba1           3 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRF-KAHPDQLVLIFA--GKI--L--KDPDSLAQCGVRDGLTVH   74 (84)
T ss_dssp             CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTSBHHHHTCCTTCEEE
T ss_pred             CCCCEEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHH-CcCchhEEEEEe--eee--c--cccCcHHHcCCCCCCEEE
Confidence            5577899999999875 6777899999999999998864 777888899864  543  5  457899999998 56665


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      ++
T Consensus        75 lv   76 (84)
T d1yqba1          75 LV   76 (84)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0095  Score=42.28  Aligned_cols=69  Identities=19%  Similarity=0.249  Sum_probs=56.8

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      ..|-||+++|+.+.-....+++|..|-.-|... .+.++...+|+..  .+.  |  +.+.||.++|+. +++|.+.
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~-~gip~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~sti~lv   72 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKR-QGVPADQLRVIFA--GKE--L--PNHLTVQNCDLEQQSIVHIV   72 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHH-HTCCGGGEEEEET--TEE--E--CTTCBGGGSSCCTTCEEEEE
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHH-HCcChhHeEEEEe--eeE--c--CCCCCHHHcCCCCCCEEEEE
Confidence            468999999999999999999999999999886 4777778888875  443  5  458999999999 5667653

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.014  Score=41.13  Aligned_cols=70  Identities=16%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .|.||..+|+.+.-....+++|..|-.-|.... |.++..-+|+.+.=++.  |  ..+.||.+.|+. +++|++.
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~-gip~~~QrLi~~~~Gk~--L--~D~~tL~~y~i~~g~~i~lv   72 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKI-GVHAFQQRLAVHPSGVA--L--QDRVPLASQGLGPGSTVLLV   72 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHH-CCCGGGEEEEEETTCCB--C--CSSSCSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHh-ccCCccEEEEEcCCCee--c--cCCCcHHHcCCCCCCEEEEE
Confidence            588999999999999999999999999998864 66777888876432332  5  447999999999 4666553

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.27  E-value=0.0052  Score=51.53  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=63.2

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------H
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------K  128 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~  128 (342)
                      -.|||++|+|+ .++|+.|..=...  -.+...++-+.+..+++++.++.+..                          .
T Consensus        31 ~~GK~vVL~FyP~~~t~~C~~E~~~--f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~  108 (194)
T d1uula_          31 YKGKWLVLFFYPMDFTFVCPTEICQ--FSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKC  108 (194)
T ss_dssp             GTTSEEEEEECSCTTCSHHHHHHHH--HHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCH
T ss_pred             hCCCeEEEEEEeCCccccchhhhhH--HHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcch
Confidence            35899999999 7899998864322  12223444456899999999876543                          3


Q ss_pred             HHHhCCC------CCCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378          129 VCTYYKL------DSIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP  170 (342)
Q Consensus       129 ~~~~y~v------~~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~  170 (342)
                      ++..|++      ..+|..+|||| .|.+...+.+.+    ..+++|..|..
T Consensus       109 v~~~ygv~~~~~~~~~R~tfvID~-~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         109 IMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             HHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHHHcCCeeccCCceEEEEEEECC-CCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence            5667777      34788999997 788877765433    46777665543

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0081  Score=47.21  Aligned_cols=40  Identities=15%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhhc
Q 019378          134 KLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       134 ~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      .+...|.++|||| .|+++.++.+..+++.+.+.|.+.+..
T Consensus       126 ~i~h~~~~fLID~-~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1         126 LVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             eeeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3456799999998 799999998888888877766666653

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=96.20  E-value=0.015  Score=47.20  Aligned_cols=92  Identities=13%  Similarity=0.179  Sum_probs=60.5

Q ss_pred             HHcCCeEEEEEecC-CCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-----------------------HHH
Q 019378           75 SVQDKWLLVNLQST-KEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-----------------------KVC  130 (342)
Q Consensus        75 k~~~K~LlV~l~~~-~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-----------------------~~~  130 (342)
                      .-.|||++|+|+-. ||+.|..-...  -.+...+|-..++.+++++.++.+..                       .++
T Consensus        28 d~~GK~vvl~F~p~~~~p~C~~e~~~--~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~  105 (166)
T d1we0a1          28 DLKGKWSIVVFYPADFSFVCPTELED--VQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTIS  105 (166)
T ss_dssp             TTSSSEEEEEECSCTTCSSCTHHHHH--HHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHH
T ss_pred             HhCCCeEEEEEecccCCcHHHHHHHH--HHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHH
Confidence            34579999999954 89988864322  11223334456899999999987642                       235


Q ss_pred             HhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          131 TYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       131 ~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      +.|++.      ..|...|||| .|.+...+-+..    ++++++..|.
T Consensus       106 ~~ygv~~~~~~~~~r~tfvID~-~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1         106 RQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             HHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             HHhCCCccccCcccceEEEECC-CCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            677762      4678999998 688876554422    5677776554

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.017  Score=42.36  Aligned_cols=69  Identities=12%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC--CCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE--GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~--~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +|-||..+|+.+.-....++||..|-.-|.....  +.+....+|+.+  ++.  |  +.+.||++.|+. +++|.+.
T Consensus         2 ~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~s~i~lv   73 (95)
T d1uela_           2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA--GKI--L--NDDTALKEYKIDEKNFVVVM   73 (95)
T ss_dssp             EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET--TEE--C--CTTSBGGGGTCCSSSEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEEC--CeE--c--cCCCcHHHcCCCCCCEEEEE
Confidence            5889999999999999999999999999987532  345677888875  443  5  447899999998 5666654

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.014  Score=43.59  Aligned_cols=72  Identities=19%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CCCeeEEEEECCC----CceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-Cc
Q 019378          261 RSLLCRVGVRLPD----GRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NA  335 (342)
Q Consensus       261 ~~~~~~i~iRlP~----G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~  335 (342)
                      ..+.++|+|++|.    |+.+.-....++||.+|-.-|...+ +.+....+|+..  .+.  |  +.+.||.+.|+. ++
T Consensus        12 ~tg~ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~-gi~~~~qkLi~~--Gk~--L--~d~~tL~~~gI~~~s   84 (100)
T d1wjua_          12 TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETF-GLQENYIKIVIN--KKQ--L--QLGKTLEEQGVAHNV   84 (100)
T ss_dssp             CCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHT-TCCSTTCEEEET--TEE--C--CTTSBHHHHTCCSSE
T ss_pred             ccceEEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHH-CCCCeeEEEEEc--ccC--c--CCCcCHHHcCCCCCC
Confidence            3568899999974    8889999999999999999998874 677888999875  443  5  558999999999 55


Q ss_pred             eEEE
Q 019378          336 MISV  339 (342)
Q Consensus       336 ~l~v  339 (342)
                      .|+|
T Consensus        85 ~i~v   88 (100)
T d1wjua_          85 KAMV   88 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5654

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.02  Score=39.89  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=57.5

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +.|-||-..|+.+.-.-..++||..|-.-+.... +.++...+|+..  .+.  |  +.+.||++.|+. +++|.+-+
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~-~i~~~~q~Li~~--Gk~--L--~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQI-GTQPNKIVLQKG--GSV--L--KDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHH-CCTTTSEEEESS--SCE--E--CTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhh-cccccEEEEEEE--eEE--e--cccCcHHHcCCCCCCEEEEEE
Confidence            5788999999999999999999999999998864 677889999875  443  5  457899999999 46666543

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.018  Score=40.37  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +|-||..+|+.+.-....+++|..|-.-+... .+.+....+|+..  .+.  +  +.+.||++.|+. +++|.+
T Consensus         2 qI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~-~gi~~~~qrL~~~--Gk~--L--~d~~tL~~y~i~~~s~I~L   69 (76)
T d1ogwa_           2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-EGIPPDQQRLIFA--GKQ--L--EDGRTLSDYNIQKESTLHL   69 (76)
T ss_dssp             EEEEEETTSCEEEEECCTTSBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTSBGGGGTCCTTCEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHhhhhh-cCCChHHEEeEEC--CeE--c--CCCCCHHHcCCCCCCEEEE
Confidence            68899999999999999999999999999886 3677778888875  442  4  458999999999 466644

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.91  E-value=0.032  Score=46.16  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             HcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-----------------------HHHH
Q 019378           76 VQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-----------------------KVCT  131 (342)
Q Consensus        76 ~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-----------------------~~~~  131 (342)
                      -.|||++|||+ .++++-|..-....  ++...+|-+.+..+++++.++.+..                       .++.
T Consensus        28 ~kGk~vVL~FyP~~~tp~C~~e~~~f--~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~  105 (186)
T d1n8ja_          28 TEGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTR  105 (186)
T ss_dssp             HTTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHH
T ss_pred             hCCCeEEEEEEeccCCCccHHHHHHH--HHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHH
Confidence            37899999999 66777776543222  4445556667999999999997753                       2345


Q ss_pred             hCCCC------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhhh
Q 019378          132 YYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPFM  172 (342)
Q Consensus       132 ~y~v~------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~l  172 (342)
                      .|++.      ..|..+|||| .|.+...+...    -+++++|..|...-
T Consensus       106 ~yGv~~~~~g~~~r~tfiID~-~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         106 NFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             HTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCcccCCcceeeEEEECc-hheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            66662      3578999998 58876555332    36788888777544

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.87  E-value=0.011  Score=47.48  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .|||++|||+ ..+|+.|..-...  -++...++-+.+..+++++.++....                          .+
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~--~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~  102 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIA--FSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQI  102 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHH--HHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred             CCCeEEEEEeehhcCCccccchhh--HHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHH
Confidence            5899999999 7899999754321  12334455667999999999886542                          23


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      +..|++.      ..|...|||+ .|.+.+.+.+..    +.+++|+.|.
T Consensus       103 ~~~ygv~~~~~g~~~R~tfvID~-~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         103 SRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHhccccCCccccEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            4566663      3568899998 788877665433    3567666554

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0067  Score=48.40  Aligned_cols=83  Identities=13%  Similarity=0.258  Sum_probs=58.1

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc----EEEEEeecCChh--------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN----FIFWQVYDDTSE--------------------------  125 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~----FV~w~~~~~s~e--------------------------  125 (342)
                      ...|..+|.|.+.+|+.|+.|..      .+..+++.+    |+++.+....++                          
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~------~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~   97 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQ------QLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL   97 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHhH------HHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcc
Confidence            35688899999999999999964      456777653    333332222221                          


Q ss_pred             ------------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHh
Q 019378          126 ------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVP  170 (342)
Q Consensus       126 ------------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~  170 (342)
                                  ...+++.+++.++|++++.   +|.   .+.|+++++.|...|..
T Consensus        98 ~~~~~~~~~i~~~~~la~~lGv~GTPt~~~~---nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1          98 PKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHhcCcCCCCEEEEc---CCc---EecCCCCHHHHHHHHHh
Confidence                        1345678899999998874   465   46899999999887754

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.043  Score=40.74  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .+..++|.|+.++|+ ..-....+++|..|-.-|.... +.+....+|+..  .+.  |  +.+.||.++|+. +++|++
T Consensus        29 ~~~~i~V~Vk~~~~~-~~i~V~~~~tV~~LK~~I~~~~-gi~~~~qrLi~~--Gk~--L--~D~~tL~~~~I~~g~~I~l  100 (103)
T d1j8ca_          29 EPKIIKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRF-KSQTDQLVLIFA--GKI--L--KDQDTLIQHGIHDGLTVHL  100 (103)
T ss_dssp             CCCCEEEEEECSSCE-EEEEECTTCCHHHHHHHHHHHH-CSCSSSEEEEET--TEE--E--STTSCGGGTTCSSSEEEEE
T ss_pred             CCCeEEEEEECCCcc-EEEEECCCChHHHHHHHHHHHH-CcCHHHeeeeee--eec--c--cCCCcHHHcCCCCCCEEEE
Confidence            355799999999986 5668999999999999998864 777888999864  443  5  347899999999 466655


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      +
T Consensus       101 v  101 (103)
T d1j8ca_         101 V  101 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.83  E-value=0.017  Score=49.85  Aligned_cols=92  Identities=12%  Similarity=0.034  Sum_probs=62.7

Q ss_pred             HHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhH-------------------------HH
Q 019378           75 SVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEG-------------------------KK  128 (342)
Q Consensus        75 k~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg-------------------------~~  128 (342)
                      ..++||+++++| .++|+.|..=...+  .....+|-+.+..+++++.++.+.                         ..
T Consensus        26 ~~kGk~vVLff~P~dftpvCttEl~~~--~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~  103 (237)
T d2zcta1          26 VSQGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGT  103 (237)
T ss_dssp             HTTTCEEEEEEESCSSCHHHHHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGH
T ss_pred             hcCCCEEEEEEECCCCCccCHHHHHHH--HhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchH
Confidence            457899999999 78899886532111  112334556689999999887543                         23


Q ss_pred             HHHhCCC-------CCCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          129 VCTYYKL-------DSIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       129 ~~~~y~v-------~~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      ++..|++       ...|.++|||| .|.+...+.+..    +.+++|..|.
T Consensus       104 vak~yGv~~~~~~~~~~RatFIIDp-dG~Ir~~~~~~~~~gR~~dEiLr~l~  154 (237)
T d2zcta1         104 VARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVK  154 (237)
T ss_dssp             HHHHTTCC----CCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHH
T ss_pred             HHHHcCCccccccccceeeeEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            5677887       46799999998 688755554422    5777777654

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.0092  Score=45.73  Aligned_cols=95  Identities=15%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             cccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc--cEEEEEe---ecCChhHHHHHHhC--CCC
Q 019378           64 NGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST--NFIFWQV---YDDTSEGKKVCTYY--KLD  136 (342)
Q Consensus        64 ~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~--~FV~w~~---~~~s~eg~~~~~~y--~v~  136 (342)
                      ..+|++.+    .++|.+||+|..+||-.|.  |. .|  ..+...+.+  +-+.=.+   +++..+...++..|  .+.
T Consensus        11 ~~nFd~~i----~~~~~~lV~F~~~wc~~~~--~~-~~--~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_          11 TVTFYKVI----PKSKFVLVKFDTQYPYGEK--QD-EF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             HHHHHHHG----GGSSEEEEEEECSSCCTTT--TH-HH--HHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             HHhHHHHH----hhCCeEEEEEecCCcCccc--CH-HH--HHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            34565555    6689999999999885442  11 11  233333332  2222223   34556667788775  578


Q ss_pred             CCcEEEEEeCCCCce--EEEEeCCCChHHHHHHHH
Q 019378          137 SIPVVLVVDPITGQK--MRSWCGMVQPESLLEDLV  169 (342)
Q Consensus       137 ~~P~l~ii~p~tG~~--l~~~~G~~~~~~~l~~L~  169 (342)
                      +||+|.+...  |..  .....|..+.+.|++.|.
T Consensus        82 ~yPTi~~f~~--G~~~~~~~y~G~rt~~~l~~fi~  114 (122)
T d1g7ea_          82 SYPVFYLFRD--GDFENPVPYSGAVKVGAIQRWLK  114 (122)
T ss_dssp             SCEEEEEEES--SCCCCCEEEESCCCHHHHHHHHH
T ss_pred             CCCeEEEEec--CcccCceecCCCCCHHHHHHHHH
Confidence            9999999874  543  346789999999876443

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.028  Score=39.48  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=55.4

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .++|.|+-+||+.+..+-..+.+++.|.+.+.... +.+...++|+..  .+.  +  +.+.|++++|+. +.+|-|
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~-~~~~~~~~f~fd--G~~--l--~~~~T~~~l~~edgD~Idv   71 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-GVPMNSLRFLFE--GQR--I--ADNHTPKELGMEEEDVIEV   71 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHH-TCCGGGEEEEET--TEE--C--CTTCCHHHHTCCTTEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHh-CCChhHEEEEEC--CEE--C--CCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999999999999999876653 556778888743  543  4  568999999999 555644

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.035  Score=38.49  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      .+|.|+.+++ ++.-....++||..|-.-|.... |.+....+|+..  ++.  |  +.+.||.++|+. +++|+++
T Consensus         2 i~I~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~-gip~~~qrLi~~--Gk~--L--~D~~tL~~~~I~~g~~i~lV   70 (73)
T d2bwfa1           2 LNIHIKSGQD-KWEVNVAPESTVLQFKEAINKAN-GIPVANQRLIYS--GKI--L--KDDQTVESYHIQDGHSVHLV   70 (73)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHH-CCCGGGEEEEET--TEE--C--CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEEeCCe-EEEEEECCCChHHHHHHHHHHHH-CcChHHeEEEEC--CeE--c--cCCCcHHHCCCCCCCEEEEE
Confidence            6788998755 57889999999999999998864 777888999864  443  5  456899999999 5666553

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.59  E-value=0.032  Score=45.03  Aligned_cols=33  Identities=15%  Similarity=0.406  Sum_probs=25.3

Q ss_pred             CcEEEEEeCCCCceEEEEeCCC--ChHHHHHHHHhh
Q 019378          138 IPVVLVVDPITGQKMRSWCGMV--QPESLLEDLVPF  171 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~~~~G~~--~~~~~l~~L~~~  171 (342)
                      .|.++|||| .|.++..+.|..  ..+++++.|+.+
T Consensus       134 ~~~~~liD~-~G~i~~~~~g~~~~~~~~l~~dik~~  168 (172)
T d1xzoa1         134 QSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSA  168 (172)
T ss_dssp             CCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             eeEEEEEcC-CCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence            367999998 799998888853  467888777654

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.018  Score=40.19  Aligned_cols=67  Identities=12%  Similarity=0.075  Sum_probs=54.6

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISV  339 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v  339 (342)
                      +|.||..+|+.+.-....++||..|-.-+.... |.+....+|+..  ++.  |  ..+.||.|.|+.+++|++
T Consensus         2 ~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~-gip~~~qrLi~~--Gk~--L--~d~~tL~dy~i~~~ti~l   68 (73)
T d1wx9a1           2 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASV-SIPSEKQRLIYQ--GRV--L--QDDKKLQEYNVGGKVIHL   68 (73)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHH-CCCTTTCCCEET--TEE--C--CSSSBHHHHTCTTEEEBC
T ss_pred             EEEEEcCCCCEEEEEECCCChHHHHHHHHHHHh-CCChHHEEEEEC--CeE--c--cCCCCHHHhCCCCCEEEE
Confidence            689999999999999999999999999998863 667777777764  442  5  457999999997776654

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.028  Score=39.45  Aligned_cols=70  Identities=10%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             eeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcC--CCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          264 LCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLE--GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       264 ~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~--~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ..+|.||..+|+.+.-....+++|..|-.-+.....  ..+....+|+..  ++.  |  +.+.||.+.|+. ++.|++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~~s~i~~   74 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA--GKI--L--SDDVPIRDYRIDEKNFVVV   74 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS--SSE--E--CSSSBTTTTCCCTTSCEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEEC--CcC--c--cCCCcHHHcCCCCCCEEEE
Confidence            367999999999999999999999999998876531  245667888754  553  5  458999999999 455544

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.35  E-value=0.053  Score=41.01  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             CeeEEEEECC---CCceEEEEeCC-CCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceE
Q 019378          263 LLCRVGVRLP---DGRRMQRNFLR-TDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMI  337 (342)
Q Consensus       263 ~~~~i~iRlP---~G~r~~rrF~~-~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l  337 (342)
                      +.++|+|++|   ||+++.-.... ++||..|-.-|... .+.+....+|+..  .+.  |  ..+.||.+.||. +++|
T Consensus        26 g~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~-~gip~~~QrLi~~--Gk~--L--~D~~tL~~ynI~~gsti   98 (111)
T d1we6a_          26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-IQIPANKQKLSGK--AGF--L--KDNMSLAHYNVGAGEIL   98 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-TTCCTTTSEEECS--SSB--C--CTTSBTTTTTCSSSCEE
T ss_pred             CCEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHH-HCCCccceEEEEe--eEE--c--cccCCHHHcCCCCCCEE
Confidence            3466777764   69999999975 99999999999886 4777788899853  543  5  457899999999 5777


Q ss_pred             EEEe
Q 019378          338 SVTW  341 (342)
Q Consensus       338 ~v~w  341 (342)
                      .+.+
T Consensus        99 ~L~l  102 (111)
T d1we6a_          99 TLSL  102 (111)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7764

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.029  Score=40.05  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=54.2

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +..++|.|+.++++ ..-.+..+++|..|-.-|... .+.++...+|+..  .+.  |  ..+.||.++|+.+ ++|.+
T Consensus         8 ~~~i~v~Vk~~~~~-~~i~v~~~~tV~~lK~~I~~~-~~v~~~~qrL~f~--Gk~--L--~d~~tL~~~gI~~gs~I~l   78 (83)
T d1wx8a1           8 SRIIRVSVKTPQDC-HEFFLAENSNVRRFKKQISKY-LHCNADRLVLIFT--GKI--L--RDQDILSQRGILDGSTVHV   78 (83)
T ss_dssp             SCEEEEEEECSSSE-EEEEEETTCCHHHHHHHHHHH-TCSCTTTBCCEET--TEE--C--CTTSCHHHHTCCTTEEEEC
T ss_pred             CCeEEEEEEcCCCc-EEEEECCCChHHHHHHHHHHH-hCCChhHEEEEEE--hhc--c--ccCCcHHHcCCCCCCEEEE
Confidence            45799999999876 577889999999999999886 4667777787754  443  5  3367999999985 55544

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.05  Score=39.93  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ....+|.||+.||+.+.-+-..++||..|-.-+..    .++...+|+..  .+.  | .|...||.++||. +++|++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~----~~~~~qrLi~~--Gk~--L-~dd~~tL~~y~i~~g~~v~l   74 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFP----GQESQMKLIYQ--GRL--L-QDPARTLSSLNITNNCVIHC   74 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSS----STTTTCEEEET--TEE--C-CCSSCBTTTTTCCTTEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc----CCcceeEEEEC--CEE--c-ccCCCCHHHcCCCCCCEEEE
Confidence            45789999999999999999999999999876643    34567788764  443  4 3567899999999 455654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.015  Score=46.48  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             HcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhcc----EEEEEeecCChh--------------------------
Q 019378           76 VQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTN----FIFWQVYDDTSE--------------------------  125 (342)
Q Consensus        76 ~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~----FV~w~~~~~s~e--------------------------  125 (342)
                      .+.|..+|.|.+..|+.|+.|.      +.+.+++..+    |+.|.+....+.                          
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~------~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   97 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLH------EQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS   97 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHH------TTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHH------HHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccc
Confidence            4568899999999999999986      3455565543    222222111111                          


Q ss_pred             ------------HHHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHHHhhhh
Q 019378          126 ------------GKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       126 ------------g~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l~  173 (342)
                                  -..+++.+++.++|++++.   +|+   .+.|+++++.|...|.....
T Consensus        98 ~~~~~~~~~i~~~~~la~~lgv~GTPt~~~~---nG~---~v~G~~~~e~l~~~i~~~~k  151 (156)
T d1eeja1          98 VAPASCDVDIADHYALGVQLGVSGTPAVVLS---NGT---LVPGYQPPKEMKEFLDEHQK  151 (156)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCSSSEEECT---TSC---EEESCCCHHHHHHHHHHHHH
T ss_pred             cchhhhcchHHHHHHHHHHcCCcCCCEEEEe---CCe---EecCCCCHHHHHHHHHHHHH
Confidence                        1345678899999997653   465   46799999999887776553

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.18  Score=39.78  Aligned_cols=97  Identities=4%  Similarity=0.031  Sum_probs=57.1

Q ss_pred             HHHHcCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH-------------------HHHHh
Q 019378           73 AASVQDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK-------------------KVCTY  132 (342)
Q Consensus        73 ~Ak~~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~-------------------~~~~~  132 (342)
                      ....++++++++++ ..||+.|..-...+  .+...++ ++++++++++.++.+..                   .++..
T Consensus        28 ~~~~k~~~vvlff~p~~~cp~C~~~~~~~--~~~~~~~-~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~  104 (156)
T d2a4va1          28 KITENNRVVVFFVYPRASTPGSTRQASGF--RDNYQEL-KEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGL  104 (156)
T ss_dssp             HHHHHCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHH-TTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHH
T ss_pred             HHcCCccEEEEEecccccCcchhhhhHHH--HHHHHHH-hhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHH
Confidence            34456899999988 78999998754333  2223333 56778889888876653                   23455


Q ss_pred             CCCCCCcE-----EEEEeCCCCceEEEEeCCC---ChHHHHHHHHhhhh
Q 019378          133 YKLDSIPV-----VLVVDPITGQKMRSWCGMV---QPESLLEDLVPFMD  173 (342)
Q Consensus       133 y~v~~~P~-----l~ii~p~tG~~l~~~~G~~---~~~~~l~~L~~~l~  173 (342)
                      |++...|.     -.+|+. .|.++.++.|..   .++..++.+..+++
T Consensus       105 ygv~~~~~~~~~r~~~i~~-dg~i~~~~~~~~~~~~~~~~~~evl~~lk  152 (156)
T d2a4va1         105 LGAKKTPLSGSIRSHFIFV-DGKLKFKRVKISPEVSVNDAKKEVLEVAE  152 (156)
T ss_dssp             HTCBSSSSSCBCCEEEEEE-TTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccCCeeEEEEEEE-CCeEEEEEEEeCCCCCcchHHHHHHHHHH
Confidence            66544442     122333 577776666543   23444445555554

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.09  Score=36.72  Aligned_cols=69  Identities=22%  Similarity=0.145  Sum_probs=53.8

Q ss_pred             EEEEECCCCc-eEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGR-RMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~-r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|.||..+|+ .+.- .-..+++|..|-.-|... .|.+....+|+..  ++.  |  +.+.||.+.|+. +++|.++.
T Consensus         2 ~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~-~gip~~~qrLi~~--Gk~--L--~D~~tL~~y~I~~~sti~lv~   73 (76)
T d2faza1           2 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-FHVEPGLQRLFYR--GKQ--M--EDGHTLFDYEVRLNDTIQLLV   73 (76)
T ss_dssp             EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-HCCCGGGEEEEET--TEE--C--CTTCBTTTTTCCTTCEEEEEE
T ss_pred             EEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHH-HCcChHHeEEEEe--eEe--c--cCCCcHHHcCCCCCCEEEEEE
Confidence            5889999996 4543 578999999999999886 3777788888864  443  5  557999999998 57777654

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.53  E-value=0.086  Score=38.50  Aligned_cols=69  Identities=13%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      ...++|.|++ +|+++.-....++||.+|-.-|... .+.+...-+|+  |.++   +  ..+.||.++||.+ ++|++
T Consensus        15 ~~~i~v~V~~-~~k~~~i~v~~~~TV~~LK~~I~~~-tgvp~~~q~Li--~~g~---l--~D~~tL~~~~I~~gs~i~l   84 (95)
T d1v86a_          15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-TGLPPAMQKVM--YKGL---V--PEDKTLREIKVTSGAKIMV   84 (95)
T ss_dssp             CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-HCSCSTTCCCB--SSSB---C--CSSSBHHHHCCCTTEEEEE
T ss_pred             ccEEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-hCCChhHEEEE--eccc---c--cCCCcHHHCCCCCCCEEEE
Confidence            4578899987 8889999999999999999999875 46667777776  4332   4  4488999999995 55554

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.13  Score=36.69  Aligned_cols=60  Identities=17%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceEEE
Q 019378          273 DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMISV  339 (342)
Q Consensus       273 ~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l~v  339 (342)
                      +|+.+.-....+++|..|-.-|... .+.+.....|+..  .+.  |  ..+.||++.|+.+ ++|.+
T Consensus        20 ~G~~~~l~v~~~~tV~~lK~~I~~~-~~ip~~~q~Li~~--Gk~--L--~D~~tL~dY~I~~gsti~l   80 (86)
T d1zkha1          20 NGQVLVFTLPLTDQVSVIKVKIHEA-TGMPAGKQKLQYE--GIF--I--KDSNSLAYYNMANGAVIHL   80 (86)
T ss_dssp             SSCEEEEEECTTSBHHHHHHHHHHH-TCCCTTTEEEEET--TEE--E--CTTSBHHHHTCCTTEEEEE
T ss_pred             CCeEEEEEECCCChHHHHHHHHHhh-hcCChHHEEEEeC--CcC--c--CCCCCHHHcCCCCCCEEEE
Confidence            7888999999999999999999886 4777888888775  442  5  4588999999985 55654

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.17  Score=34.77  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=56.0

Q ss_pred             eEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcCceEEEEeC
Q 019378          265 CRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE  342 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~~~l~v~w~  342 (342)
                      ++|.|+-.||+.+..+-..+.+++.|++...... +.+....+|+-.  ...  +  +.+.|-+++|+..+-++-+|.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~-~~~~~~~~f~fd--G~~--i--~~~~Tp~~l~med~D~Idv~~   72 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-GLSMRQIRFRFD--GQP--I--NETDTPAQLEMEDEDTIDVFQ   72 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHH-TCCTTTCEEEET--TEE--C--CTTCCTTTTTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHh-CCCccceEEEEC--CEE--c--CCCCCHHHcCCCCCCEEEEEC
Confidence            6899999999999999999999999998765543 556677777643  443  3  668899999999777766663

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.17  Score=35.15  Aligned_cols=69  Identities=22%  Similarity=0.211  Sum_probs=53.3

Q ss_pred             EEEEECCCCc-eEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEEe
Q 019378          266 RVGVRLPDGR-RMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVTW  341 (342)
Q Consensus       266 ~i~iRlP~G~-r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~w  341 (342)
                      +|.||..+|+ .++- .-..++||..|-.-|... .|.+....+|+..  ++.  |  +.+.||.+.|+. +++|.+++
T Consensus         2 ~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~-~gip~~~qrLi~~--Gk~--L--~d~~tL~~y~I~~~s~i~lv~   73 (76)
T d1wy8a1           2 WIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-FDVRPECQRLFYR--GKQ--L--ENGYTLFDYDVGLNDIIQLLV   73 (76)
T ss_dssp             EEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-SCCCTTTEEEEET--TEE--C--CSSSBHHHHTCCTTCEEEEEE
T ss_pred             EEEEEeCCCCceEEEeccCCCChHHHHHHHHHHH-HCCCchhcEEEEE--eeE--e--cCCCCHHHcCCCCCCEEEEEE
Confidence            5889999996 3443 578999999999999886 4777888888875  443  4  558999999998 56666543

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=94.33  E-value=0.16  Score=35.52  Aligned_cols=69  Identities=20%  Similarity=0.261  Sum_probs=53.3

Q ss_pred             CeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          263 LLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       263 ~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      ..++|.++- +|+.+.-+-..+++++.|.+.+.... +.+...++|+-.  .+.  +  +.+.|++++||. +.+|.|
T Consensus         3 ~~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~-~i~~~~~~l~f~--G~~--l--~~~~T~~~~~i~dgd~I~v   72 (79)
T d1euvb_           3 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQ-GKEMDSLRFLYD--GIR--I--QADQTPEDLDMEDNDIIEA   72 (79)
T ss_dssp             SEEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHT-TCCGGGEEEEET--TEE--C--CTTCCTTTTTCCTTEEEEE
T ss_pred             cEEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHh-CCChHhEEEEEC--CEE--e--CCCCCHHHCCCCCCCEEEE
Confidence            457788875 67788888999999999999887763 666778888764  443  4  678999999998 566654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=94.24  E-value=0.063  Score=43.36  Aligned_cols=89  Identities=9%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             CCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HHH
Q 019378           78 DKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KVC  130 (342)
Q Consensus        78 ~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~~  130 (342)
                      ++|++++|+ .++|+.|..=..+  -++...++-+.++.+++++.++.+..                          .++
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~--~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIA--FDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHH--HHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCEEEEEEEccccCCcCHHHHHH--HHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            369999998 8899988653221  12233445566899999999886543                          345


Q ss_pred             HhCCCC-----CCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 019378          131 TYYKLD-----SIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLV  169 (342)
Q Consensus       131 ~~y~v~-----~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~  169 (342)
                      +.|++.     ..|..+|||+ .|.+...+.+..    +++++|..|.
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~-~G~I~~~~~~~~~~~~~~~eiL~~l~  157 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVD  157 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcC-CCeEEEEEEeCCCCCCCHHHHHHHHH
Confidence            667662     4688999998 688765443322    4566665543

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.19  E-value=0.27  Score=37.30  Aligned_cols=90  Identities=19%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             HHcCCeE--EEEEecCCCcchhhhhhcccCCHHHHHHH---hccEEEEEeecCChhHHHHHHhCCCCCCcEEEEEeCCCC
Q 019378           75 SVQDKWL--LVNLQSTKEFSSHMLNRDTWANEAVSQTI---STNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITG  149 (342)
Q Consensus        75 k~~~K~L--lV~l~~~~~~~~~~f~rdvl~~~~V~~~i---~~~FV~w~~~~~s~eg~~~~~~y~v~~~P~l~ii~p~tG  149 (342)
                      .+-.+++  .+++..++|..|+.+..       +.+-|   .+..-+-..+.+++++..++..|++...|++.|.++  |
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~~-------ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~--g   88 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLKQ-------LVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD--G   88 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHHH-------HHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET--T
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHHH-------HHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecC--C
Confidence            3444554  33344466788877631       21211   235555555788999999999999999999999885  4


Q ss_pred             ceE-EEEeCCCChHHHHHHHHhhhh
Q 019378          150 QKM-RSWCGMVQPESLLEDLVPFMD  173 (342)
Q Consensus       150 ~~l-~~~~G~~~~~~~l~~L~~~l~  173 (342)
                      +-- -++.|...-.+|-..|..++.
T Consensus        89 ~~~gIrF~GiP~GhEf~SlilaIl~  113 (119)
T d1a8la1          89 KDFGVRYFGLPAGHEFAAFLEDIVD  113 (119)
T ss_dssp             BCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred             cccceEEEeccCchhHHHHHHHHHH
Confidence            432 267787766666555555544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.16  Score=40.70  Aligned_cols=84  Identities=7%  Similarity=0.020  Sum_probs=57.2

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhc---cEEEEEeecCChhH---------------------------
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTIST---NFIFWQVYDDTSEG---------------------------  126 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~---~FV~w~~~~~s~eg---------------------------  126 (342)
                      ..+..++.|.+..|+.|+.|-.      .+.+++.+   .++++.+.+..+++                           
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~------~l~~l~~~~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~  108 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQ------QARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKL  108 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHH------HHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEEECCCCcchHHHHH------HHHHHHhccceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcc
Confidence            4466678888889999999864      45667655   25555544433322                           


Q ss_pred             -------------------HHHHHhCCCCCCcEEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 019378          127 -------------------KKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDL  168 (342)
Q Consensus       127 -------------------~~~~~~y~v~~~P~l~ii~p~tG~~l~~~~G~~~~~~~l~~L  168 (342)
                                         ..+++.+++.+.|+++|.++ +|. +.++.|..+++.|...|
T Consensus       109 ~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~-~g~-~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         109 KLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENT-LQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTE-EEEEESSCCHHHHHHHT
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHh
Confidence                               12345778999999999896 454 67789998888765543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.15  Score=40.59  Aligned_cols=74  Identities=16%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhH---------------------HHHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEG---------------------KKVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg---------------------~~~~~~  132 (342)
                      .||+++|+|. +.+|..|..-..      .+.+...  .+..++.+..++++.                     ..++..
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~------~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVR------KFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQA  116 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHH------HHHHHHHTSTTEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHH
T ss_pred             CCCeEEEEEecchhcccchHHHH------HHHHHHHhhccceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHh
Confidence            5788888887 668988865432      2333332  367777777776544                     345667


Q ss_pred             CCCC---------CCcEEEEEeCCCCceEEEEeC
Q 019378          133 YKLD---------SIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       133 y~v~---------~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      |++.         ..|+++|||+ +|.++..+.+
T Consensus       117 ygv~~~~~~~~g~~~ra~fvID~-~G~I~y~~~~  149 (164)
T d1qxha_         117 YGVAIADGPLKGLAARAVVVIDE-NDNVIFSQLV  149 (164)
T ss_dssp             TTCBBCSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             cCeEeecCcccCcccCEEEEEcC-CCEEEEEEEc
Confidence            7652         2367899997 7888776543

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.11  Score=43.08  Aligned_cols=92  Identities=10%  Similarity=0.035  Sum_probs=61.4

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .|||++|+|+ .++|+-|..=...  -.+...+|-+.+..+++++.++.+.+                          .+
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~--~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~v  110 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIA--FSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRL  110 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHH--HHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEecccccccchhhhHH--HHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHH
Confidence            4799999999 6788888663221  12233445556999999998875443                          34


Q ss_pred             HHhCCCC------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHhh
Q 019378          130 CTYYKLD------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVPF  171 (342)
Q Consensus       130 ~~~y~v~------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~~  171 (342)
                      +..|++-      .+|..+|||| .|.+...+.+.    -..++++..|...
T Consensus       111 a~~ygv~~~~~g~~~R~tfiID~-~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         111 SEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHhCCCcccCCeeeEEEEEECC-CCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            5677762      4788999998 67776654443    2567777665544

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.51  E-value=0.068  Score=39.16  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CCCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          261 RSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       261 ~~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      .....+|.|+..+|+...-....+++|..|-.-|... .+.+...-+|+.  ..+.  |. |  .||.++|+. +.+|++
T Consensus         4 ~s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~-~gvp~~~QkLi~--~Gk~--L~-d--~tL~~~gi~~g~~i~l   75 (96)
T d1wgga_           4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFAL-TGVQPARQKVMV--KGGT--LK-D--DDWGNIKMKNGMTVLM   75 (96)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHH-TCCCTTTSCCEE--TTEE--CC-S--SCCCSCCCCSSCEEEC
T ss_pred             CCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhh-cCccceeeEEee--cCcc--cC-C--CcHHHCCCCCCCEEEE
Confidence            3567899999999987788999999999999999875 467777777764  3553  53 3  379999999 566665


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      .
T Consensus        76 v   76 (96)
T d1wgga_          76 M   76 (96)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.43  Score=40.05  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH----------------------------
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK----------------------------  127 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~----------------------------  127 (342)
                      .+||++++|| .++|+-|..=...  -.+...++-+.++.+++++.++.+..                            
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~--~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~  103 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGR--AAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRN  103 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHH--HHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTT
T ss_pred             CCCeEEEEEECCCCCCcchhhHHH--HHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcc
Confidence            4589999999 5688888663211  12334445556899999999876542                            


Q ss_pred             -HHHHhCCCC------------CCcEEEEEeCCCCceEEEEeCC----CChHHHHHHHHh
Q 019378          128 -KVCTYYKLD------------SIPVVLVVDPITGQKMRSWCGM----VQPESLLEDLVP  170 (342)
Q Consensus       128 -~~~~~y~v~------------~~P~l~ii~p~tG~~l~~~~G~----~~~~~~l~~L~~  170 (342)
                       .++..|++-            ..+.+.|||| .|.+-..+...    -+++++|..|..
T Consensus       104 ~~va~~ygv~~~~~~~~~~~~~~~RatFIID~-~g~Ir~~~~~~~~~gR~~dEiLr~l~a  162 (220)
T d1prxa_         104 RELAILLGMLDPAEKDEKGMPVTARVVFVFGP-DKKLKLSILYPATTGRNFDEILRVVIS  162 (220)
T ss_dssp             CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             cHHHHHhCCccccccccccceeeeEEEEEEcC-ccceeEEEEecCCcccchHHHHHHHHH
Confidence             345677652            4578999998 68776655432    267888776554

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=92.13  E-value=0.29  Score=39.20  Aligned_cols=90  Identities=11%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HHH
Q 019378           78 DKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KVC  130 (342)
Q Consensus        78 ~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~~  130 (342)
                      +||++|+|+ ..+|.-|..=..+.  ++...+|-+.++.+++++.++.+..                          .++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f--~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHH--hhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            489999998 67888886543221  2223345556999999999886543                          345


Q ss_pred             HhCCC-----CCCcEEEEEeCCCCceEEEEeCCC----ChHHHHHHHHh
Q 019378          131 TYYKL-----DSIPVVLVVDPITGQKMRSWCGMV----QPESLLEDLVP  170 (342)
Q Consensus       131 ~~y~v-----~~~P~l~ii~p~tG~~l~~~~G~~----~~~~~l~~L~~  170 (342)
                      +.|++     ...+...||++ .|.+...+.+.+    +.+++++.|..
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~-~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcC-CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            56665     22478899997 677766654433    34566665544

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.98  E-value=0.16  Score=37.77  Aligned_cols=72  Identities=21%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CCeeEEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC---------------CCcCeEEEecCCCCccccCCCcCCC
Q 019378          262 SLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS---------------EMKPFRLTHAIPGATKSLDYDSKLT  326 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~---------------~~~~f~L~~~fPr~~~~l~~~~~~T  326 (342)
                      +...+|.|+..||+.+.-.-..++||.+|-.-|.... +.               .+..|.|+..  .+.  | .|.+.|
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~-~ip~~~Qr~~~~~~~~~~~~~~~Li~~--G~~--L-~d~~~t   78 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYV-QLKQEREGGVQHISWSYVWRTYHLTSA--GEK--L-TEDRKK   78 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTTCCCCCCHHHHHTTEEEESS--SCE--E-CCSSSB
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHH-CcCHHHhcccccccccccccceEEEEC--CEE--C-cccCCC
Confidence            4578999999999999999999999999999887753 11               1345778764  332  5 356789


Q ss_pred             hhhcCCc-CceEEE
Q 019378          327 FEDSGLA-NAMISV  339 (342)
Q Consensus       327 l~e~gL~-~~~l~v  339 (342)
                      |.+.|+. +++|++
T Consensus        79 L~~~gI~~g~~l~l   92 (105)
T d1v2ya_          79 LRDYGIRNRDEVSF   92 (105)
T ss_dssp             HHHHTCCSSEEEEE
T ss_pred             HHHcCCCCCCEEEE
Confidence            9999998 566654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.83  Score=37.06  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=26.0

Q ss_pred             EEEEEeCCCCceEEEEeCCCChHHHHHHHHhhh
Q 019378          140 VVLVVDPITGQKMRSWCGMVQPESLLEDLVPFM  172 (342)
Q Consensus       140 ~l~ii~p~tG~~l~~~~G~~~~~~~l~~L~~~l  172 (342)
                      +-.|||+ .|+++.++.+..+|+++...|...|
T Consensus       152 tKFLIdr-~G~vv~rf~~~~~p~~i~~~Ie~lL  183 (184)
T d2f8aa1         152 EKFLVGP-DGVPLRRYSRRFQTIDIEPDIEALL  183 (184)
T ss_dssp             CEEEECT-TSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             EEEEECC-CCCEEEEECCCCCHHHHHHHHHHHh
Confidence            4488995 8999999998889988877776655

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.66  E-value=0.23  Score=35.52  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CCeeEEEEECCCCceEEE-EeCCCCchHHHHHHHHhhcCCCCCcCeEEEec-CCCCccccCCCcCCChhhcCCcC-ceEE
Q 019378          262 SLLCRVGVRLPDGRRMQR-NFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA-IPGATKSLDYDSKLTFEDSGLAN-AMIS  338 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r~~r-rF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~-fPr~~~~l~~~~~~Tl~e~gL~~-~~l~  338 (342)
                      ....+|.|+..+ .+..- ....+++|.+|-.-|... .+.++...+|+.. |=.+  .+  +.+.||.++|+.+ .+|+
T Consensus         5 s~~~~i~Vk~~~-~~~~i~~v~~~~tV~~LK~~i~~~-t~vp~~~QkLi~~~~~Gk--~L--~D~~tL~~~~i~~g~~i~   78 (90)
T d1v5ta_           5 SSGLPIIVKWGG-QEYSVTTLSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGK--PA--ENDVKLGALKLKPNTKIM   78 (90)
T ss_dssp             CCSCCEEEEETT-EEEEECSCCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTE--EC--CTTSBHHHHTCCTTEEEE
T ss_pred             CCcEEEEEEECC-eEEEEEEeCCCCcHHHHHHHHHHH-HcCCHHHhhhhhhccCCc--CC--CCcCcHHHcCCCCCCEEE
Confidence            456789999844 45554 689999999999999876 4777888888743 2122  24  4478999999994 5565


Q ss_pred             E
Q 019378          339 V  339 (342)
Q Consensus       339 v  339 (342)
                      +
T Consensus        79 l   79 (90)
T d1v5ta_          79 M   79 (90)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.38  E-value=0.46  Score=34.39  Aligned_cols=78  Identities=14%  Similarity=-0.020  Sum_probs=55.0

Q ss_pred             CCeeEEEEECC-CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEe-cCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          262 SLLCRVGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTH-AIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       262 ~~~~~i~iRlP-~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~-~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      ...+.|-|.-+ ++....|||..+.||..|-.-|+.. .|.+...-+|.- .-+.+......+.+.||.+.|+. +..|+
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~-tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ih   83 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH   83 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHH-hCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEE
Confidence            45688999986 6667999999999999999999885 466665555543 21111111124679999999998 45566


Q ss_pred             EE
Q 019378          339 VT  340 (342)
Q Consensus       339 v~  340 (342)
                      |+
T Consensus        84 lv   85 (95)
T d1v6ea_          84 VI   85 (95)
T ss_dssp             EB
T ss_pred             EE
Confidence            53

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.77  Score=32.94  Aligned_cols=73  Identities=15%  Similarity=0.039  Sum_probs=54.7

Q ss_pred             CCeeEEEEECCCCce--EEEEeCCCCchHHHHHHHHhhcC-CCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-C--c
Q 019378          262 SLLCRVGVRLPDGRR--MQRNFLRTDPIQLLWSYCYSQLE-GSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-N--A  335 (342)
Q Consensus       262 ~~~~~i~iRlP~G~r--~~rrF~~~~~l~~l~~fv~~~~~-~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~--~  335 (342)
                      ...++|.|+.||++.  +.-....++||..|-+-|...+. ..+....+|+..  .+.  |  ..+.||.|.+.. +  .
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~--Gk~--L--~D~~~L~d~~~~~~~~~   78 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS--GKL--L--LDHQCLRDLLPKQEKRH   78 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET--TEE--C--CSSSCHHHHSCSSSCSE
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEEC--CeE--c--cCCCCHHHhCcccCCCC
Confidence            456899999999986  55566799999999999988753 245677899875  442  4  669999999765 3  3


Q ss_pred             eEEEE
Q 019378          336 MISVT  340 (342)
Q Consensus       336 ~l~v~  340 (342)
                      +|+++
T Consensus        79 viHLV   83 (93)
T d1wgda_          79 VLHLV   83 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.63  E-value=0.99  Score=35.52  Aligned_cols=86  Identities=15%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHH-hccEEEEEeecCChhHH--------------------HHHHhCC
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVYDDTSEGK--------------------KVCTYYK  134 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i-~~~FV~w~~~~~s~eg~--------------------~~~~~y~  134 (342)
                      .+|+++++|+ +.+|+.|..-...      +.+.. ..+..++.+..++....                    .+...|+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~------l~~~~~~~g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  115 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRT------FDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYG  115 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHH------HHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTT
T ss_pred             CCcEEEEEeeecccccccHHHHHH------HhhhcccccccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhC
Confidence            6788999888 5577778654322      22222 33566677777665432                    1234554


Q ss_pred             CC---------CCcEEEEEeCCCCceEEEEeC-----CCChHHHHHHHH
Q 019378          135 LD---------SIPVVLVVDPITGQKMRSWCG-----MVQPESLLEDLV  169 (342)
Q Consensus       135 v~---------~~P~l~ii~p~tG~~l~~~~G-----~~~~~~~l~~L~  169 (342)
                      +.         ..|+++|||+ .|.++..+.+     ..+.++.++.|.
T Consensus       116 ~~~~~~~~~g~~~ra~fvID~-~G~I~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_         116 VTIADGPMAGLLARAIVVIGA-DGNVAYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             CBBCSSTTTTSBCSEEEEECT-TSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             eeeccCcccCceeeEEEEEeC-CCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence            41         2368999997 7898866543     124566665554

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.57  E-value=0.8  Score=36.01  Aligned_cols=73  Identities=12%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             cCCeEEEEEecCCCcchhhhhhcccCCHHHHHHH--hccEEEEEeecCChhHHHHHHhC---CCCCCcEEEEEeCCCCce
Q 019378           77 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTI--STNFIFWQVYDDTSEGKKVCTYY---KLDSIPVVLVVDPITGQK  151 (342)
Q Consensus        77 ~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i--~~~FV~w~~~~~s~eg~~~~~~y---~v~~~P~l~ii~p~tG~~  151 (342)
                      ++++.+++|..+||.+|....      |.+..+-  +.+..+..++.  .+....+..|   ....+|.+++++. .+..
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~------P~l~~l~~~~~~~~~~~i~~--d~~~~~~~~~~~~~~~~~p~~~~~d~-~~~~  123 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISK--GRAEDDLRQRLALERIAIPLVLVLDE-EFNL  123 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECH--HHHHHHTTTTTTCSSCCSSEEEEECT-TCCE
T ss_pred             cCCeEEEEEEeCcCccHHHHH------HHHHHHHHHCCCCcEEEEEC--ccCHHHHHHHHHhccccccceeecCc-cchh
Confidence            689999999999999999975      3344432  23444444333  3445566666   3356899988885 5677


Q ss_pred             EEEEeCC
Q 019378          152 MRSWCGM  158 (342)
Q Consensus       152 l~~~~G~  158 (342)
                      +..|.+.
T Consensus       124 ~~~~~~~  130 (166)
T d1z6na1         124 LGRFVER  130 (166)
T ss_dssp             EEEEESS
T ss_pred             ccccccc
Confidence            7778664

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=90.46  E-value=0.61  Score=36.84  Aligned_cols=74  Identities=16%  Similarity=0.115  Sum_probs=46.1

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH---------------------HHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK---------------------KVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~---------------------~~~~~  132 (342)
                      .+|+++++|+ +.+|+.|..-..      .+.+.+.  .+..++++..++++..                     .++..
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~------~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVR------KFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ  114 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHH------HHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred             CCcEEEEEecCccccCcccHHHH------HHHHHHHHhccceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHh
Confidence            5688888888 456776754321      2222222  2577777777776542                     33455


Q ss_pred             CCC-------C--CCcEEEEEeCCCCceEEEEeC
Q 019378          133 YKL-------D--SIPVVLVVDPITGQKMRSWCG  157 (342)
Q Consensus       133 y~v-------~--~~P~l~ii~p~tG~~l~~~~G  157 (342)
                      |.+       .  ..|.++|||+ .|.+...|.+
T Consensus       115 ~g~~~~~~~~~g~~~Ra~fvID~-~G~I~y~~~~  147 (164)
T d1q98a_         115 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV  147 (164)
T ss_dssp             TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             hceecccCccccCcccEEEEECC-CCEEEEEEEC
Confidence            654       1  1378999997 7898887754

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.91  E-value=0.71  Score=32.01  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             EEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCcC-ceE
Q 019378          267 VGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLAN-AMI  337 (342)
Q Consensus       267 i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~~-~~l  337 (342)
                      |.|=.|||+|.+-+...+.+|..|.+=+-.++ ++++..|.|...  ++.  +  |.+..|.=+||.| +.|
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~-~~~~~~~~Lkh~--~k~--l--dLsl~~R~sgLpnnakL   67 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQ-DFNPSEYDLKFQ--RTV--L--DLSLQWRFANLPNNAKL   67 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHT-TCCGGGCEEEET--TEE--E--SSSCBHHHHCCCSSCEE
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHh-CCChhHceeeeC--CEE--c--CccceeeecCCCCCCEE
Confidence            56778999999999999999999998866654 778899999986  332  4  8899999999994 555

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.69  E-value=1.4  Score=31.18  Aligned_cols=77  Identities=12%  Similarity=0.078  Sum_probs=52.3

Q ss_pred             CeeEEEEECC-CCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCC-ccccCCCcCCChhhcCCc-CceEEE
Q 019378          263 LLCRVGVRLP-DGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGA-TKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       263 ~~~~i~iRlP-~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~-~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      +.+.|.|... .+..+.+||..+.||..|-.-|.... |.++..=+|.---... ......+.++||.+.|+. +..|+|
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~-Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihv   81 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVV-GTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA   81 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHH-CCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHH-CCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEE
Confidence            4567777752 23458999999999999999998864 6666666665321111 011224679999999998 555666


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      +
T Consensus        82 v   82 (90)
T d1t0ya_          82 V   82 (90)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.57  E-value=0.7  Score=33.80  Aligned_cols=70  Identities=13%  Similarity=0.116  Sum_probs=52.5

Q ss_pred             eEEEE----ECCCCceEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEE
Q 019378          265 CRVGV----RLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISV  339 (342)
Q Consensus       265 ~~i~i----RlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v  339 (342)
                      -+|-|    |=-+|..+.-.-..+++|.+|-..|+.. .+.+....+|+.+  .+.  | .+.++||+++|+. +.+|++
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~-~gip~~~Q~Li~~--Gk~--L-~dd~~tL~~~gI~~g~~i~l   81 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-SGVPAEEAQIVYM--EQL--L-TDDHCSLGSYGLKDGDMVVL   81 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-TCCCGGGBCEEET--TEE--E-CCSSSBHHHHTCCTTEEEEE
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHH-hCCCcceEEEEeC--CeE--e-ecccCCHHHcCCCCCCEEEE
Confidence            34555    3335888888999999999999999886 3667778888865  543  5 3567899999999 555655


Q ss_pred             E
Q 019378          340 T  340 (342)
Q Consensus       340 ~  340 (342)
                      +
T Consensus        82 ~   82 (102)
T d1v5oa_          82 L   82 (102)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.99  E-value=0.66  Score=36.50  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHh--ccEEEEEeecCChhHH---------------------HHHHh
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTIS--TNFIFWQVYDDTSEGK---------------------KVCTY  132 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~--~~FV~w~~~~~s~eg~---------------------~~~~~  132 (342)
                      .+|+++|++. +.+|..|..-.+      .+.+.+.  .+..++.+..++++..                     .++..
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~------~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTR------RFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRD  114 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHH------HHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHH
T ss_pred             CCcEEEEEeccccccccchhhHH------HHHHHHHhhcccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHh
Confidence            6788888888 668888887432      2333333  2566777777765432                     23456


Q ss_pred             CCC--CCC----cEEEEEeCCCCceEEEEeCC-C----ChHHHHHHHH
Q 019378          133 YKL--DSI----PVVLVVDPITGQKMRSWCGM-V----QPESLLEDLV  169 (342)
Q Consensus       133 y~v--~~~----P~l~ii~p~tG~~l~~~~G~-~----~~~~~l~~L~  169 (342)
                      |++  ..+    ++++|||+ .|.+...+.+. +    +.+++++.|+
T Consensus       115 ygv~~~~~~~~~Ra~fvID~-~G~I~y~~~~~~~~~~~~~~~il~alk  161 (163)
T d1psqa_         115 YALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAK  161 (163)
T ss_dssp             HTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             heeecccccceeEEEEEECC-CCEEEEEEEcCCCCCCCCHHHHHHHHh
Confidence            665  223    36799997 78887665432 1    3356655543

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=1.3  Score=30.67  Aligned_cols=68  Identities=13%  Similarity=0.102  Sum_probs=50.3

Q ss_pred             eEEEEECCCCceEEEEe-----CCCCchHHHHHHHHhhcCCCCCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEE
Q 019378          265 CRVGVRLPDGRRMQRNF-----LRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMIS  338 (342)
Q Consensus       265 ~~i~iRlP~G~r~~rrF-----~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~  338 (342)
                      .+|.|.. .|.+..-.+     ..++||.+|-+-|... .+.+....+|+..  ++.  | .+.+.||.++|+. +++|+
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~-tgvp~~~QkL~~~--G~~--L-~~d~~tL~~~gi~~g~~i~   74 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEV-IGVPQSFQKLIFK--GKS--L-KEMETPLSALGIQDGCRVM   74 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHH-TCCCTTTCEEEET--TEE--E-CCSSSBHHHHTCCSSEEEE
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHH-HCcCHHHEEeeec--CeE--e-CcCCCChHHCCCCCCCEEE
Confidence            4567765 445677777     4688999999999886 4777888899753  543  5 3678999999999 56565


Q ss_pred             E
Q 019378          339 V  339 (342)
Q Consensus       339 v  339 (342)
                      +
T Consensus        75 l   75 (81)
T d1wxva1          75 L   75 (81)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.58  E-value=0.38  Score=37.25  Aligned_cols=71  Identities=11%  Similarity=-0.031  Sum_probs=42.7

Q ss_pred             CeEEEEEe-cCCCcchhhhhhcccCCHHHHHHH----hccEEEEEeecCChhHH---------------------HHHHh
Q 019378           79 KWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTI----STNFIFWQVYDDTSEGK---------------------KVCTY  132 (342)
Q Consensus        79 K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i----~~~FV~w~~~~~s~eg~---------------------~~~~~  132 (342)
                      |+++|+++ +.||+.|..-.      +.+.+..    ..++.++.++.++.+..                     .++..
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~------~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQA  103 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHH
T ss_pred             CcEEEEecccccccchhhhh------hhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHH
Confidence            45555544 67888887532      2333322    34788888888776542                     23456


Q ss_pred             CCCC------CCcEEEEEeCCCCceEEEEe
Q 019378          133 YKLD------SIPVVLVVDPITGQKMRSWC  156 (342)
Q Consensus       133 y~v~------~~P~l~ii~p~tG~~l~~~~  156 (342)
                      |++.      .+|+.+|||+ .|.+.....
T Consensus       104 ygv~~~~~g~~~r~tfvID~-~G~I~~~~~  132 (153)
T d1xvwa1         104 YGVFNEQAGIANRGTFVVDR-SGIIRFAEM  132 (153)
T ss_dssp             TTCEETTTTEECSEEEEECT-TSBEEEEEE
T ss_pred             hhhhhhccCceeeeEEEECC-CCEEEEEEE
Confidence            6651      2467889997 687765443

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=88.02  E-value=0.57  Score=39.23  Aligned_cols=90  Identities=8%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             cCCeEEEEEe-cCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHH--------------------------HH
Q 019378           77 QDKWLLVNLQ-STKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGK--------------------------KV  129 (342)
Q Consensus        77 ~~K~LlV~l~-~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~--------------------------~~  129 (342)
                      .+||++++|| .++++-|..=...  -.+...+|-+.+..+++++.++.+.+                          .+
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~--f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~v  106 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAE--LGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESREL  106 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHH--HHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHH--HHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHH
Confidence            6899999999 5677777653211  12223345556999999999886553                          34


Q ss_pred             HHhCCCC------------CCcEEEEEeCCCCceEEEE-eCC---CChHHHHHHHH
Q 019378          130 CTYYKLD------------SIPVVLVVDPITGQKMRSW-CGM---VQPESLLEDLV  169 (342)
Q Consensus       130 ~~~y~v~------------~~P~l~ii~p~tG~~l~~~-~G~---~~~~~~l~~L~  169 (342)
                      +..|++-            ..-.+.|||| .|.+...+ ...   -..+++|..|.
T Consensus       107 a~~ygv~~~~~~~~~~~~~~~R~tFiIDp-~g~Ir~~~~~~~~~gr~~~EiLr~l~  161 (219)
T d1xcca_         107 ANKLKIMDEQEKDITGLPLTCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLK  161 (219)
T ss_dssp             HHHHTCEEEEEECTTSCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HHHhCCcccccccCcccceeeeeeEEEcC-cceEEEEEEeCCCcccCHHHHHHHHH
Confidence            5666651            1248889998 57765543 321   25677777664

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.13  E-value=1.8  Score=30.98  Aligned_cols=72  Identities=18%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             eEEEEECCCCc-eEEEEeCCCCchHHHHHHHHhhcCCCCCcCeEEEec----CCCC-----ccccCCCcCCChhhcCCcC
Q 019378          265 CRVGVRLPDGR-RMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHA----IPGA-----TKSLDYDSKLTFEDSGLAN  334 (342)
Q Consensus       265 ~~i~iRlP~G~-r~~rrF~~~~~l~~l~~fv~~~~~~~~~~~f~L~~~----fPr~-----~~~l~~~~~~Tl~e~gL~~  334 (342)
                      +-|+||.-||. |++-- ..+.||..|-.-++..+ +.+...=.|.++    .++-     .++.-.|...+|+.+|+.+
T Consensus         1 ~iiRiRsrdG~eRv~v~-~~~~Tl~~LK~~Ie~~L-~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~h   78 (94)
T d1wf9a1           1 TMLRVRSRDGLERVSVD-GPHITVSQLKTLIQDQL-QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   78 (94)
T ss_dssp             EEEEEECSSCEEEEEEC-CTTSBHHHHHHHHHHHS-CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             CeEEEEecCCceEEEec-CCCCcHHHHHHHHHHHh-CCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccC
Confidence            35899999997 44441 34679999999999986 223333333332    0000     0222236678999999997


Q ss_pred             ceEE
Q 019378          335 AMIS  338 (342)
Q Consensus       335 ~~l~  338 (342)
                      ++++
T Consensus        79 Gsiv   82 (94)
T d1wf9a1          79 GSMV   82 (94)
T ss_dssp             TCEE
T ss_pred             ceEE
Confidence            6654

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.80  E-value=2.7  Score=30.11  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=47.0

Q ss_pred             EEEEECCCCceEEEEeCCCCchHHHHHHHHhhcCCC--CCcCeEEEecCCCCccccCCCcCCChhhcCCc-CceEEEE
Q 019378          266 RVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGS--EMKPFRLTHAIPGATKSLDYDSKLTFEDSGLA-NAMISVT  340 (342)
Q Consensus       266 ~i~iRlP~G~r~~rrF~~~~~l~~l~~fv~~~~~~~--~~~~f~L~~~fPr~~~~l~~~~~~Tl~e~gL~-~~~l~v~  340 (342)
                      +..|++|+...- -.=..+.+|..|-..+...++..  .+...+|+..  ++.  |  ..+.||.+.|+. +++|+++
T Consensus        20 k~~i~~p~~~~~-~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~--Gk~--L--~D~~tL~~y~I~~gstihLV   90 (94)
T d1x1ma1          20 KSILQLPETELG-EYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC--GRK--L--KDDQTLDFYGIQPGSTVHVL   90 (94)
T ss_dssp             CEEECCCCCSSC-SSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET--TEE--C--CTTCBHHHHTCCTTCEEEEE
T ss_pred             cceEECCCCccC-ccCCCccCHHHHHHHHHHHcccCCCChhheEEEEC--CeE--E--CCCccHHHcCCCCCCEEEEE
Confidence            466788875421 11145789999999998776432  2467888875  443  5  568999999998 5777664

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=80.78  E-value=3.6  Score=30.68  Aligned_cols=108  Identities=15%  Similarity=0.065  Sum_probs=61.3

Q ss_pred             cCcccccHHHHHHHHHHcCCeEEEEEecCCCcchhhhhhcccCCHHHHHHHhccEEEEEeecCChhHHHHHHhCCC--CC
Q 019378           60 HLMFNGSFEKAKDAASVQDKWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKL--DS  137 (342)
Q Consensus        60 ~~~f~gs~~eA~~~Ak~~~K~LlV~l~~~~~~~~~~f~rdvl~~~~V~~~i~~~FV~w~~~~~s~eg~~~~~~y~v--~~  137 (342)
                      |++-.-+.+.+...- ..+++|++.|.+... ++..+...   =..|..-.+.+++|..+|.+  +.....+.|++  ..
T Consensus         6 PLv~e~~~~n~~~~~-~~~~pl~~lf~~~~~-~~~~~~~~---~~~vA~~~~~ki~Fv~vd~~--~~~~~l~~~gl~~~~   78 (133)
T d2djka1           6 PLIGEIGPETYSDYM-SAGIPLAYIFAETAE-ERKELSDK---LKPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDK   78 (133)
T ss_dssp             CCSEECCHHHHHHHH-HTTSCEEEEECSCSS-SHHHHHHH---HHHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSS
T ss_pred             CceeccChhhHHHHh-cCCCCEEEEEeCCch-HHHHHHHH---HHHHHHHhcCceEEEEEeHH--HhHHHHHHhcCCccc
Confidence            334444544444444 356788888877542 23222110   01222222446776665544  33355667777  66


Q ss_pred             CcEEEEEeCCCCceEE-EEeCCCChHHHHHHHHhhhhc
Q 019378          138 IPVVLVVDPITGQKMR-SWCGMVQPESLLEDLVPFMDG  174 (342)
Q Consensus       138 ~P~l~ii~p~tG~~l~-~~~G~~~~~~~l~~L~~~l~~  174 (342)
                      +|.++|++...+.... .-.+.++++.+...+..+++-
T Consensus        79 ~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~G  116 (133)
T d2djka1          79 FPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             SSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcC
Confidence            9999999975444321 124568898888888887774