Citrus Sinensis ID: 019390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccEEEEccccccccEEEEHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEHcHHHHHHHcccHHHHHccccccEccccccccccccHHHEHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MWELICLTLAATAgnnigkvlqkkgtvilpplsfKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVfleqgfptmlvpVCISIsiccsgtgfyyqtrglkhgRAIVVSTCAAVASIVTGVVAGMLAlgerlpsaptARFSLLLGWLLIMIGVVLLVSSsrlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaATLHQLITSTAKEKA
Flexible Loop (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaatlhqlitstakeka
Low Complexity Region (SEG)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGvvllvsssrlvrHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Disordered region (IsUnstruct)
*WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL**********************************
Disordered Region (DISOPRED)
MWELICLTLAATAGNNIGKVLQ******************AYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ***SISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS****************************************************
Disordered Region (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL************PSAVIPAATLHQLI********
Disordered Region (DISPRO)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPS*******************GPSAVIPAA**HQLIT*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
P55580	117	Uncharacterized protein y	yes	no	0.325	0.948	0.318	0.0006

>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234) GN=NGR_a02340 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
           I L  AA   + IG +L K G   LPP +          +   +V G +      LL  +
Sbjct: 6   IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61

Query: 65  ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
           AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  GG
Sbjct: 62  ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
224114565	359	predicted protein [Populus trichocarpa]	0.985	0.935	0.763	1e-152
255550079	344	conserved hypothetical protein [Ricinus	0.991	0.982	0.812	1e-146
356552374	343	PREDICTED: uncharacterized protein LOC10	0.991	0.985	0.763	1e-143
224088802	332	predicted protein [Populus trichocarpa]	0.958	0.984	0.757	1e-142
356564039	343	PREDICTED: uncharacterized protein LOC10	0.991	0.985	0.757	1e-141
356507006	344	PREDICTED: uncharacterized protein LOC10	0.991	0.982	0.769	1e-140
356514649	338	PREDICTED: uncharacterized protein LOC10	0.991	1.0	0.774	1e-140
449447136	344	PREDICTED: uncharacterized protein LOC10	0.991	0.982	0.775	1e-139
297811313	344	hypothetical protein ARALYDRAFT_909170 [	0.988	0.979	0.768	1e-138
22326741	344	uncharacterized protein [Arabidopsis tha	0.988	0.979	0.765	1e-138

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 278/364 (76%), Positives = 312/364 (85%), Gaps = 28/364 (7%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-----------------VIRAYA 43
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLSFKLK                 VIRAYA
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKACIFYPLSFSFFSLPPLVIRAYA 60

Query: 44  VNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM 103
            NKAW+IGFL+DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+
Sbjct: 61  ANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWI 120

Query: 104 GITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMI 163
           GITLAGIGTIGVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+
Sbjct: 121 GITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMM 180

Query: 164 EFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFY 223
           ++EVVEEIIYGLESGILFG   MASVISK+GFVFLEQGF  MLVP+C+SISICCS TGFY
Sbjct: 181 DYEVVEEIIYGLESGILFG---MASVISKMGFVFLEQGFSRMLVPICVSISICCSATGFY 237

Query: 224 YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV 283
           YQT+GLKHGRAIVVSTCAAVASIVTGV+AGMLALGE+LPSAPTARFSLLLGWL I++GV+
Sbjct: 238 YQTQGLKHGRAIVVSTCAAVASIVTGVLAGMLALGEQLPSAPTARFSLLLGWLFIVVGVI 297

Query: 284 LLVSSSRLVRHFRWPSRRIMKSG------LVRTGSQRVKDSGPSAVIPAATLHQLITSTA 337
           LLVSS+ L+RH   P RR ++        L R+GS R+KDS P+AVI AATLH LI+S +
Sbjct: 298 LLVSSTWLLRHL--PLRRFIRINVDRNFSLSRSGSLRLKDSNPTAVIHAATLHHLISSPS 355

Query: 338 KEKA 341
           KEKA
Sbjct: 356 KEKA 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/347 (81%), Positives = 310/347 (89%), Gaps = 9/347 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK+WVIGFLMDI GA+
Sbjct: 1   MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAM 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTIGVGAGGE
Sbjct: 61  LMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIYGLESGIL
Sbjct: 121 EQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASVISK+ FVFLEQGF  MLVP+CISISIC S TGFYYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASIVTGV+AGMLALGERLPSAP AR SLLLGWLLI++GV+LLVSS+RL+R    P R
Sbjct: 238 AAVASIVTGVLAGMLALGERLPSAPAARLSLLLGWLLIIVGVILLVSSTRLLRQLPRPLR 297

Query: 301 RIMKS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
            +M+S       L R+GS RVKDS PSAVI  ATLHQLI++ AKEKA
Sbjct: 298 HLMRSKADWNFNLSRSGSIRVKDSNPSAVIQTATLHQLISTPAKEKA 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/346 (76%), Positives = 304/346 (87%), Gaps = 8/346 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE + LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFLMDI GAL
Sbjct: 1   MWESVVLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLMDILGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IYGLESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   M+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTGFYYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGFYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR     S+
Sbjct: 238 AAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSQ 297

Query: 301 RIMKS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
           R   +      L R  S RV+++ PSAVI AATL+ L++S++KEKA
Sbjct: 298 RKRSNVDKNFDLRRATSSRVRETSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088802|ref|XP_002308547.1| predicted protein [Populus trichocarpa] gi|222854523|gb|EEE92070.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/346 (75%), Positives = 292/346 (84%), Gaps = 19/346 (5%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAG+NIGKVLQKKGTVI           RAYA N AW+IGFLMDI GAL
Sbjct: 1   MWESICLTLAATAGSNIGKVLQKKGTVI-----------RAYAANVAWIIGFLMDIIGAL 49

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LML+ALS APVSVIQPVSGCGLAILS+FSHFYLKEVMN +DWMGITLAGIGTIGVGAGGE
Sbjct: 50  LMLKALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWMGITLAGIGTIGVGAGGE 109

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSISI QLPWLA +V+ILFV+LNGWLR+ + QRR  E +++EVVEEIIYGLESGIL
Sbjct: 110 EQEASSISILQLPWLALLVAILFVVLNGWLRMYRRQRRAHETMDYEVVEEIIYGLESGIL 169

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASVISK+GFVFLEQGF  MLVP+C++ISICCS TGFYYQT+GLKHGRAIV+STC
Sbjct: 170 FG---MASVISKMGFVFLEQGFSKMLVPLCLTISICCSATGFYYQTQGLKHGRAIVLSTC 226

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASIVTGV+AGMLALGERLPSAP ARFSLLLGWLLI++GV+LLVSS+ L+RH   P R
Sbjct: 227 AAVASIVTGVLAGMLALGERLPSAPAARFSLLLGWLLIVVGVILLVSSTWLLRHLPRPLR 286

Query: 301 RIMKSG-----LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
               S      L R+GS R+KD  P+AVI AATLH LI+S +KEKA
Sbjct: 287 HFTSSADRNFSLSRSGSLRLKDPNPTAVIHAATLHHLISSPSKEKA 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/346 (75%), Positives = 302/346 (87%), Gaps = 8/346 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFL+DIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IYG ESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   M+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTG YYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR     SR
Sbjct: 238 AAVASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSR 297

Query: 301 RIMKS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
           +   +     GL    S RV++  PSAVI AATL+ L++S++KEKA
Sbjct: 298 QKRSNVEKNFGLRGATSSRVREPSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 306/347 (88%), Gaps = 9/347 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK WVIGFLMDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASI+TGV+AGMLALGERLPSAP ARF LLLGWLLI++GV+LLV S++LVR FR+ S 
Sbjct: 238 AAVASILTGVLAGMLALGERLPSAPKARFLLLLGWLLIIVGVILLVGSTKLVRFFRFSSH 297

Query: 301 RIMKS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
              +S      G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 298 HFKRSSVDKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514649|ref|XP_003526017.1| PREDICTED: uncharacterized protein LOC100788141 [Glycine max]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/341 (77%), Positives = 304/341 (89%), Gaps = 3/341 (0%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK W+IGF+MDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWLIGFVMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASI+TGV+AGMLALGERLPSAP AR  LLLGWLLI++GV+LLV S++LVR FR+ S 
Sbjct: 238 AAVASILTGVLAGMLALGERLPSAPKARLLLLLGWLLIIVGVILLVGSTKLVRFFRFSSH 297

Query: 301 RIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 341
           R    G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 298 RFKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/347 (77%), Positives = 299/347 (86%), Gaps = 9/347 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGK+LQKKGTVILPPLSFKLKVIRAYA NK W+IGFLMDIFGA+
Sbjct: 1   MWEPICLTLAAAAGNNIGKILQKKGTVILPPLSFKLKVIRAYAFNKTWIIGFLMDIFGAV 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIYGLESGIL
Sbjct: 121 EQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASVISK+GF+FLEQGF  +LVP+CI ISICCS TGFYYQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVISKMGFLFLEQGFHQILVPICILISICCSATGFYYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASIVTGV+AGMLALGE LPS+PT R  LLLGWLLI+IGV+LLVSSSRL+R   W  R
Sbjct: 238 AAVASIVTGVLAGMLALGEELPSSPTGRLFLLLGWLLIIIGVILLVSSSRLIRRLTWLYR 297

Query: 301 RIMKSGLV-----RTGSQ-RVKDSGPSAVIPAATLHQLITSTAKEKA 341
           R  +SG+      R+GS  R++DS PSA+I   TL  L++S AK  A
Sbjct: 298 RFKRSGVDRNFGHRSGSAVRLRDSSPSAIIQTTTLQNLLSSKAKADA 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811313|ref|XP_002873540.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata] gi|297319377|gb|EFH49799.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/346 (76%), Positives = 296/346 (85%), Gaps = 9/346 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKVIRAYAVNK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVIRAYAVNKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASV+SK+GFVF+EQGF  M +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVVSKMGFVFVEQGFSAMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+GVVLLV+SSRL+RH     R
Sbjct: 238 AAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFR 297

Query: 301 RIMKSGLV------RTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 340
           R  ++ L       RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct: 298 RSRQTSLERGFNIRRTPSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/346 (76%), Positives = 296/346 (85%), Gaps = 9/346 (2%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
           FG   MASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTC
Sbjct: 181 FG---MASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTC 237

Query: 241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSR 300
           AAVASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+GVVLLV+SSRL+RH     R
Sbjct: 238 AAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFR 297

Query: 301 RIMKSGLV------RTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 340
           R  ++ L       RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct: 298 RSRQTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	0.988	0.979	0.661	5.2e-113

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 229/346 (66%), Positives = 257/346 (74%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTC 240
             FG   MASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTC
Sbjct:   181 FG---MASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTC 237

Query:   241 AAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGXXXXXXXXXXXXH----FR 296
             AAVASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+G            H    FR
Sbjct:   238 AAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFR 297

Query:   297 WPSRRIMKSG--LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 340
                +  ++ G  + RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct:   298 RSRQTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      341       299   0.00095  115 3  11 22  0.43    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  199 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.36u 0.11s 20.47t   Elapsed:  00:00:01
  Total cpu time:  20.36u 0.11s 20.47t   Elapsed:  00:00:01
  Start:  Sat May 11 13:47:59 2013   End:  Sat May 11 13:48:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.002

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 58  GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.97
KOG2922	335	consensus Uncharacterized conserved protein [Funct	99.89
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.33
PRK15430	296	putative chloramphenical resistance permease RarD;	99.21
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.06
PRK11689	295	aromatic amino acid exporter; Provisional	99.03
PLN00411	358	nodulin MtN21 family protein; Provisional	99.02
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.97
PRK11272	292	putative DMT superfamily transporter inner membran	98.81
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.8
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.77
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.73
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.54
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.49
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.48
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.48
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.47
COG2510	140	Predicted membrane protein [Function unknown]	98.47
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.47
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.4
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.25
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.05
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.66
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.66
COG2962	293	RarD Predicted permeases [General function predict	97.54
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.52
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.48
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.42
PRK11689	295	aromatic amino acid exporter; Provisional	97.41
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.39
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.35
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.26
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.25
PRK11272	292	putative DMT superfamily transporter inner membran	97.19
PLN00411	358	nodulin MtN21 family protein; Provisional	97.09
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.91
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.87
PRK11431	105	multidrug efflux system protein; Provisional	96.85
COG2076	106	EmrE Membrane transporters of cations and cationic	96.81
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.65
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.63
PRK13499	345	rhamnose-proton symporter; Provisional	96.57
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.47
PRK15430	296	putative chloramphenical resistance permease RarD;	96.41
COG2510	140	Predicted membrane protein [Function unknown]	96.38
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.35
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.76
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.34
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.23
KOG3912	372	consensus Predicted integral membrane protein [Gen	94.32
PF13536	113	EmrE: Multidrug resistance efflux transporter	94.05
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	93.61
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	93.5
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	92.23
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	90.52
PRK09541	110	emrE multidrug efflux protein; Reviewed	90.08
PRK10650	109	multidrug efflux system protein MdtI; Provisional	89.88
KOG4831	125	consensus Unnamed protein [Function unknown]	89.86
PRK11431	105	multidrug efflux system protein; Provisional	89.65
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	88.47
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	87.86
COG2076	106	EmrE Membrane transporters of cations and cationic	87.69
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	86.25
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	83.5
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	82.88

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.97  E-value=1.3e-30  Score=251.23  Aligned_cols=275  Identities=22%  Similarity=0.326  Sum_probs=202.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC   80 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~   80 (341)
                      ++|+.+|+++++++++|..+||++..+.++.+.+. +..+.|+|||.||.|+.++++|.++|+.||+++|.++|||+++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~   85 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL   85 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence            57999999999999999999999998877643333 34568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCC-CccchhhH---HH-HHHHHHHHHHHHHHHHHHhh
Q 019390           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEP-SSISIFQL---PW-LAFVVSILFVLLNGWLRICK  154 (341)
Q Consensus        81 ~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~-a~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~~l~~~~~~~~  154 (341)
                      ++++.++++++++|||++++||.|+.++++|..++. .++++++. +..+....   |. ........+..+.......+
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~  165 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP  165 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999997765 44443332 22222221   11 11111111111111122222


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhhhh--hccCccchh---hHHHHHHHHHHHHHHHHHHHHH
Q 019390          155 HQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGFVF--LEQGFPTML---VPVCISISICCSGTGFYYQTRG  228 (341)
Q Consensus       155 ~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~~~--~~~g~~~~~---~p~~l~~~v~~~~~g~~l~q~A  228 (341)
                      |.+++         +-+.|...+|+..+   ++...+| ++...  ..+|.+++.   ++..+..++.+.+.++++.|+|
T Consensus       166 r~g~~---------~i~vyi~i~sl~Gs---~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~a  233 (300)
T PF05653_consen  166 RYGRR---------NILVYISICSLIGS---FTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKA  233 (300)
T ss_pred             hhccc---------ceEEEEEEeccccc---hhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221         23668889999988   9999999 44222  223433333   3333445666788999999999


Q ss_pred             hhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019390          229 LKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  288 (341)
Q Consensus       229 lq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  288 (341)
                      ++.+++..+....-+.-...+++-|++.|+|..+.+++......+|++.++.||++++..
T Consensus       234 L~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~  293 (300)
T PF05653_consen  234 LKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSS  293 (300)
T ss_pred             HHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeecc
Confidence            999997555433334444566778888999999999999999999999999999999754

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=4.6e-24  Score=203.72  Aligned_cols=272  Identities=21%  Similarity=0.277  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCG   81 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~   81 (341)
                      .+.++|+.+++.++.+..+||++..+....+.+. +.=.+|++.|.||+|++.+++|..++++||+++|.++|.|++++|
T Consensus        21 ~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAls  100 (335)
T KOG2922|consen   21 IGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALS  100 (335)
T ss_pred             eeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHH
Confidence            3678899999999999999999987754422111 112468899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCc-cchhhH---HHHHHHHHH-HHHHHHHHHHHhhc
Q 019390           82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSS-ISIFQL---PWLAFVVSI-LFVLLNGWLRICKH  155 (341)
Q Consensus        82 lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~-a~~~~~~~~~-~~~~~~---~~~~~~~~~-~~~~l~~~~~~~~~  155 (341)
                      +++.+++++++++|+++..+.+|+.+|++|...++ .+|++++..+ .+.++.   |...+...+ ..+.+.-.....+|
T Consensus       101 vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p~  180 (335)
T KOG2922|consen  101 VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLILIFFYAPR  180 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHheeeccc
Confidence            99999999999999999999999999999997766 5555554433 333333   111111111 11111111111222


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhh--hhhccCccch---hhHHHHHHHHHHHHHHHHHHHHHh
Q 019390          156 QRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGF--VFLEQGFPTM---LVPVCISISICCSGTGFYYQTRGL  229 (341)
Q Consensus       156 ~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~--~~~~~g~~~~---~~p~~l~~~v~~~~~g~~l~q~Al  229 (341)
                      ..+.         .-+.|...+++.-.   ++.+.+| ++.  .++-+|.+++   .++..+..++.|...++.+.|+|+
T Consensus       181 ~g~t---------nilvyi~i~s~iGS---~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL  248 (335)
T KOG2922|consen  181 YGQT---------NILVYIGICSLIGS---LTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKAL  248 (335)
T ss_pred             cccc---------ceeehhhHhhhhcc---eeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222         24788899999988   9999999 443  2333443443   344445566778889999999999


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          230 KHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       230 q~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      |..++..++...-+.--...++.|...|.|....+...+...++|+..+..|+.++.
T Consensus       249 ~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~  305 (335)
T KOG2922|consen  249 DLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH  305 (335)
T ss_pred             HhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence            999976665444444445567778889999999999999999999999999999884

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.33  E-value=4.2e-10  Score=106.83  Aligned_cols=259  Identities=16%  Similarity=0.139  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--h--hHH-H--HHH-------hh--hhhHH----HHHHHHHHHHHHHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LKV-I--RAY-------AV--NKAWV----IGFLMDIFGALLML   63 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~--~~~-l--~~l-------lr--~p~W~----~G~~l~~~G~~~~~   63 (341)
                      +..+.+.++++++...+++||..++.++...  .  ... +  ..+       .+  ++.||    .+......++.+..
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999988776443211  0  000 0  001       11  11222    34445667788889


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019390           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF  143 (341)
Q Consensus        64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (341)
                      .|+...|.+.++|+...+.+++.+++..++|||+++++|.|+.++..|+..+...+.++ . ......   ..+..++  
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~-~-~~~g~~---~~l~aal--  154 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ-H-RRKAYA---WALAAAL--  154 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc-c-chhHHH---HHHHHHH--
Confidence            99999999999999999999999999999999999999999999999998765322111 1 111110   1111111  


Q ss_pred             HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHH-hhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHHHHHHHH
Q 019390          144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF  222 (341)
Q Consensus       144 ~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG-~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~~~~~g~  222 (341)
                       ....+....|+...+... .........++...+ +.+.   ...  .+..... +. ..........+...+.+..++
T Consensus       155 -~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~-~~-~~~~~~~~~~~~~~~~s~l~~  225 (281)
T TIGR03340       155 -GTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFL---LLY--LKRHGRS-MF-PYARQILPSATLGGLMIGGAY  225 (281)
T ss_pred             -HHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHH---HHH--HHHhccc-hh-hhHHHHHHHHHHHHHHHHHHH
Confidence             111122223332211100 000000111111111 2211   110  0000000 00 000011122345556677889


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390          223 YYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  285 (341)
Q Consensus       223 ~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l  285 (341)
                      +++++++|..++..++.. ...+|++++++|..+|||+....      ...|..+++.|++++
T Consensus       226 ~l~~~al~~~~a~~~~~~-~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       226 ALVLWAMTRLPVATVVAL-RNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHhhCCceEEEee-cccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence            999999999886444433 45689999999999999987432      346777888887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.21  E-value=2.1e-08  Score=96.05  Aligned_cols=256  Identities=12%  Similarity=0.085  Sum_probs=148.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH-------------------HHHHhhhhhHH----HHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-------------------IRAYAVNKAWV----IGFLMDIF   57 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-------------------l~~llr~p~W~----~G~~l~~~   57 (341)
                      ..++.+.++++++++.....-|.. .+.|+... --|.                   .++..++++++    .|......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG   85 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            457888999999999988888754 33332210 0010                   00011123332    55566777


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019390           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF  137 (341)
Q Consensus        58 G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~  137 (341)
                      .+.+.+.++...|...+.-+..+..+++.+++..++|||+++++|.|+.+..+|++.+... +++    ..   .  ..+
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~----~~---~--~~l  155 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS----LP---I--IAL  155 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC----cc---H--HHH
Confidence            8889999999999999999999999999999999999999999999999999999876521 111    11   1  111


Q ss_pred             HHHHHHHHHHHHH-HHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHH
Q 019390          138 VVSILFVLLNGWL-RICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISIC  216 (341)
Q Consensus       138 ~~~~~~~~l~~~~-~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~  216 (341)
                      ..+    ...+.+ ...|+..++..   ........+....+..+.   +.  ........ +. ...+.....++...+
T Consensus       156 ~aa----~~~a~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~-~~-~~~~~~~~~~~~~g~  221 (296)
T PRK15430        156 GLA----FSFAFYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYL---FA--IADSSTSH-MG-QNPMSLNLLLIAAGI  221 (296)
T ss_pred             HHH----HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHH---HH--HccCCccc-cc-CCcHHHHHHHHHHHH
Confidence            111    122222 22333322111   011111111111111111   00  00000000 00 011111122232333


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019390          217 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS  289 (341)
Q Consensus       217 ~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~  289 (341)
                      .+..++++.++++++-++..++.. ...+|+.++++|.+++||+....      ...|..+++.++.....+.
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHH
Confidence            567889999999999997666554 57899999999999999987433      2456667766665555444

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.06  E-value=3.1e-07  Score=88.05  Aligned_cols=262  Identities=18%  Similarity=0.172  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHHH------HHHhhh-hhH---HH--HHHHHHHHHHHHHHHHhh-cC
Q 019390            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVI------RAYAVN-KAW---VI--GFLMDIFGALLMLRALSQ-AP   70 (341)
Q Consensus         5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~l------~~llr~-p~W---~~--G~~l~~~G~~~~~~AL~~-~P   70 (341)
                      ..++++++++.+.....-|.+..+.++... ..|..      .-+.++ +.+   +.  |+......+.+.+.++.. .|
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   85 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP   85 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356788899999999998887766554321 11211      112221 111   22  222223334455667766 47


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHH--HHHHHHHHHHHHHH
Q 019390           71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPW--LAFVVSILFVLLNG  148 (341)
Q Consensus        71 l~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~  148 (341)
                      .....-+..+..+++.+++.+++|||+++++|+|+.+..+|+..+..+..+..  .   ..+.+  .++..+   +....
T Consensus        86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~---~~~~G~~l~l~aa---l~~a~  157 (299)
T PRK11453         86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--H---VAMLGFMLTLAAA---FSWAC  157 (299)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--c---hhHHHHHHHHHHH---HHHHH
Confidence            77777788888899999999999999999999999999999887753321111  1   11111  111111   11222


Q ss_pred             HHHHhhccchhhhhHHHHHHHHHHHH-HHHHhhhcchhhhHHhhhhhhhh--hccCccchhhHHHHHHHHHHHHHHHHHH
Q 019390          149 WLRICKHQRREQEMIEFEVVEEIIYG-LESGILFGNFRMASVISKLGFVF--LEQGFPTMLVPVCISISICCSGTGFYYQ  225 (341)
Q Consensus       149 ~~~~~~~~r~~~~~~~~~~~~a~~~g-~aaG~~fG~~~~~a~l~K~~~~~--~~~g~~~~~~p~~l~~~v~~~~~g~~l~  225 (341)
                      +....|+..++..  ......-..+. +.+++.+.   ..+....-....  .....+...-...+|..+++++.+++++
T Consensus       158 ~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        158 GNIFNKKIMSHST--RPAVMSLVVWSALIPIIPFF---VASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHHHHHHhcccC--ccchhHHHHHHHHHHHHHHH---HHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233343221110  00011111111 11222222   111111100000  0001111011123466678889999999


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          226 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       226 q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      ++++|+-++..++.. ...+|+++.++|+.++||+....      ...|..+++.|+.+..
T Consensus       233 ~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        233 GTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999998876555443 56799999999999999987332      3567778888876554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.03  E-value=1.5e-07  Score=90.19  Aligned_cols=259  Identities=14%  Similarity=0.087  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH-----HHHHh------hhhhH---HHHHHHHHHHHHHHHHHHhh
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-----IRAYA------VNKAW---VIGFLMDIFGALLMLRALSQ   68 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-----l~~ll------r~p~W---~~G~~l~~~G~~~~~~AL~~   68 (341)
                      ++.+++.++++.+......|.+....|+..+ -.|.     +.-.+      |+..|   ..|.........++..++..
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4667888999999999999988877766532 1111     11011      11111   12222222333334455543


Q ss_pred             ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCC----CccchhhHHHHHHHHH
Q 019390           69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEP----SSISIFQLPWLAFVVS  140 (341)
Q Consensus        69 ----~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~----~~~~~~~~~~~~~~~~  140 (341)
                          .|...+.-+..+..+++.+++..++|||+++++|.|+.+...|+..+..++.+.+.    +..+ ....+..+. .
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~-~~~~G~~~~-l  162 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA-SNPLSYGLA-F  162 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc-cChHHHHHH-H
Confidence                34444555567778899999999999999999999999999999877633211000    0000 001111111 1


Q ss_pred             HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhH-HHHHHHHHHHH
Q 019390          141 ILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVP-VCISISICCSG  219 (341)
Q Consensus       141 ~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p-~~l~~~v~~~~  219 (341)
                      ....+...+....||.+++..     .. ...+ ...++.+-   .......    ....... .... ..++.. +.+.
T Consensus       163 ~aa~~~A~~~v~~k~~~~~~~-----~~-~~~~-~~~~~~l~---~~~~~~~----~~~~~~~-~~~~~~l~~~~-~~t~  226 (295)
T PRK11689        163 IGAFIWAAYCNVTRKYARGKN-----GI-TLFF-ILTALALW---IKYFLSP----QPAMVFS-LPAIIKLLLAA-AAMG  226 (295)
T ss_pred             HHHHHHHHHHHHHhhccCCCC-----ch-hHHH-HHHHHHHH---HHHHHhc----CccccCC-HHHHHHHHHHH-HHHH
Confidence            111112222233455432211     01 1111 11222211   1111100    0001111 1111 122333 4577


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          220 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       220 ~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      .+++++++++|+.++..++.. ...+|++++++|++++||+....      ...|.++++.|++....
T Consensus       227 ~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        227 FGYAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            889999999999997666554 57899999999999999987432      35677888888876654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.02  E-value=1.5e-07  Score=93.31  Aligned_cols=214  Identities=17%  Similarity=0.185  Sum_probs=120.5

Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHhhhcc-CCCC----------
Q 019390           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEE----------  121 (341)
Q Consensus        59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~------l~~rl~~~~w~gv~~~~~Gl~~l~a-~~~~----------  121 (341)
                      +.++..++.+.|-...-=+..+..+++.+++.++      +|||+++++|+|+.++..|+.++.. ++..          
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~  171 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL  171 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence            3457888999999999999999999999999999      6999999999999999999877542 1110          


Q ss_pred             ----CC-CCccchhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhh
Q 019390          122 ----QE-PSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFV  196 (341)
Q Consensus       122 ----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~  196 (341)
                          .. ........++...+......++...+..+.|+..++  +... ......+....++.+.   ..+....-...
T Consensus       172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~-~~~t~~~~~~~~~~~~---~~~l~~~~~~~  245 (358)
T PLN00411        172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAA-FTVSFLYTVCVSIVTS---MIGLVVEKNNP  245 (358)
T ss_pred             cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcH-hHHHHHHHHHHHHHHH---HHHHHHccCCc
Confidence                00 000011111111111111111222222333332111  1000 0112223333444433   22222110000


Q ss_pred             hhc-cCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHH
Q 019390          197 FLE-QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGW  275 (341)
Q Consensus       197 ~~~-~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~  275 (341)
                      ..+ ..+. ......+|..++ +..++++++++.+.-++..++.. ...+|++++++|+++|||+....      ..+|.
T Consensus       246 ~~~~~~~~-~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~  316 (358)
T PLN00411        246 SVWIIHFD-ITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGG  316 (358)
T ss_pred             ccceeccc-hHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHH
Confidence            000 0011 011112343343 45688899999987776655544 56799999999999999988443      35788


Q ss_pred             HHHHHHHHHHhh
Q 019390          276 LLIMIGVVLLVS  287 (341)
Q Consensus       276 ~li~~gvv~l~~  287 (341)
                      ++++.|+.+...
T Consensus       317 ~LIl~Gv~l~~~  328 (358)
T PLN00411        317 ILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHh
Confidence            899999877653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.97  E-value=3.3e-07  Score=84.99  Aligned_cols=207  Identities=17%  Similarity=0.112  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019390           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI  129 (341)
Q Consensus        50 ~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~  129 (341)
                      .|.....+.+.+...|+...|.+.+..+..+..+++.+++..++|||+++++|.|+.++.+|+..+...++.+    .. 
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~----~~-  126 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS----IN-  126 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc----cc-
Confidence            5556667888888999999999999999999999999999999999999999999999999998876433221    11 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhH-
Q 019390          130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVP-  208 (341)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p-  208 (341)
                      ..-....+...+   .........|+..++..... ....... -..+++..-    .....+ ..   +...+ ..+. 
T Consensus       127 ~~G~~~~l~a~~---~~a~~~~~~k~~~~~~~~~~-~~~~~~~-~~~~~~~l~----~~~~~~-~~---~~~~~-~~~~~  192 (260)
T TIGR00950       127 PAGLLLGLGSGI---SFALGTVLYKRLVKKEGPEL-LQFTGWV-LLLGALLLL----PFAWFL-GP---NPQAL-SLQWG  192 (260)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHhHHhhcCCchH-HHHHHHH-HHHHHHHHH----HHHHhc-CC---CCCcc-hHHHH
Confidence            111011111111   11111222333221110000 0001100 111111111    111111 00   01011 1111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 019390          209 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV  282 (341)
Q Consensus       209 ~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gv  282 (341)
                      ..++..++.+..++.+++++++..++..++.. ...+|+.+.++++.++||+.+.  .    ...|..+++.|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~--~----~~~G~~li~~g~  259 (260)
T TIGR00950       193 ALLYLGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSL--P----QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHhc
Confidence            23344455667889999999999987666554 5679999999999999998743  2    234555555553

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.81  E-value=2.6e-06  Score=81.39  Aligned_cols=209  Identities=19%  Similarity=0.170  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019390           50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (341)
Q Consensus        50 ~G~~l~~~G~~~~~~AL-~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~  128 (341)
                      .|......++.+...++ ...|.....-+..+..+++.+++.. +|||+++++|.|+.+...|+..+..+++.+ .   .
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~---~  148 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-G---N  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-c---c
Confidence            34444445566777777 8888888888888899999999975 799999999999999999987775332211 1   1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHH-HHhhhcchhhhHHhhhhhhhhhccCccchhh
Q 019390          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLE-SGILFGNFRMASVISKLGFVFLEQGFPTMLV  207 (341)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~a-aG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~  207 (341)
                      ..-. +..+..++   +........|+..++..      .....+... +++...   .... .+ ...  ........+
T Consensus       149 ~~G~-l~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~-~~-~~~--~~~~~~~~~  211 (292)
T PRK11272        149 PWGA-ILILIASA---SWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLL---IASL-LS-GER--LTALPTLSG  211 (292)
T ss_pred             hHHH-HHHHHHHH---HHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHH---HHHH-Hc-CCc--ccccCCHHH
Confidence            1111 11111111   11111222333322111      011112211 112111   1110 11 000  000001111


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          208 P-VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       208 p-~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      . ...|..+..++.+++++++++|..++..++.. ...+|+.+.++|..++||+.  ++.    ...|.++++.|++.+.
T Consensus       212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----HHHHHHHHHHHHHHHH
Confidence            1 22345566778899999999999986655544 57899999999999999986  332    3567788888887775


Q ss_pred             h
Q 019390          287 S  287 (341)
Q Consensus       287 ~  287 (341)
                      .
T Consensus       285 ~  285 (292)
T PRK11272        285 L  285 (292)
T ss_pred             H
Confidence            4

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.80  E-value=1.4e-07  Score=80.78  Aligned_cols=117  Identities=18%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhH--HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS   78 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~--~l~~llr~p--~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~   78 (341)
                      .+.++.+++.++.+.|+++-|+++.+.++.+.+..  .......+|  .-+.|+...++++.+-..+++..|++...|+.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~   81 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL   81 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            36788889999999999999999988765432221  123356678  56699999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHhhhccCC
Q 019390           79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (341)
Q Consensus        79 a~~lv~t~~ls~~--~l~~rl~~~~w~gv~~~~~Gl~~l~a~~  119 (341)
                      ....++....+..  ++||++|.++|+|+.++++|+..+..++
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            8888788777775  8999999999999999999998886433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.77  E-value=1.8e-06  Score=83.01  Aligned_cols=262  Identities=15%  Similarity=0.130  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hh--H-HHH----HHhhhh-----h-HHHHHHH---HHHHHHHHHHHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-VIR----AYAVNK-----A-WVIGFLM---DIFGALLMLRAL   66 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~--~-~l~----~llr~p-----~-W~~G~~l---~~~G~~~~~~AL   66 (341)
                      +++++++++++++.--+..|+-- ..+.... +.  . .+.    ...|+|     . |..|+..   ...|..+++.|.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai   80 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM   80 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            68899999999987776666542 1111110 00  0 010    113332     2 3446665   788889999999


Q ss_pred             hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhhhccCCCCCCC-CccchhhHHHHHHHHH
Q 019390           67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIFQLPWLAFVVS  140 (341)
Q Consensus        67 ~~~Pl~lVQPl~a-~~lv~t~~ls~~~l~~rl~~~~----w~gv~~~~~Gl~~l~a~~~~~~~-~~~~~~~~~~~~~~~~  140 (341)
                      +...+++-.|+.. ..+++..+++..++||+.++++    +.|+.++++|...+....+++.. ++...... ..... .
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~-Gi~~~-l  158 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK-GILLL-L  158 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh-HHHHH-H
Confidence            9999999999987 8899999999999999999999    78888899997776533222111 00011111 11111 1


Q ss_pred             HHHHHHHHHHH-HhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHHHHH
Q 019390          141 ILFVLLNGWLR-ICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISICCSG  219 (341)
Q Consensus       141 ~~~~~l~~~~~-~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~~~~  219 (341)
                      + .....+.+. ..+....+.        ....+-...|+.++   -.......  .. .+.+..-.....+...+ ...
T Consensus       159 ~-sg~~y~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~---~~~~~~~~--~~-~~~~~~~~~~~~~~~Gi-~~~  222 (290)
T TIGR00776       159 M-STIGYLVYVVVAKAFGVDG--------LSVLLPQAIGMVIG---GIIFNLGH--IL-AKPLKKYAILLNILPGL-MWG  222 (290)
T ss_pred             H-HHHHHHHHHHHHHHcCCCc--------ceehhHHHHHHHHH---HHHHHHHH--hc-ccchHHHHHHHHHHHHH-HHH
Confidence            1 111112221 222221111        01222223333333   11111111  00 00000000111111222 235


Q ss_pred             HHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          220 TGFYYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       220 ~g~~l~q~Alq-~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      .++.+.-.+.+ .-++..+ ...+..||+++...|+.+|+|...  +.......+|.++++.|+++..-
T Consensus       223 ia~~~y~~~~~~~~~~~~~-~~ls~~~pvia~~~~v~~l~E~~~--~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATS-FSLSQLGVIISTLGGILILGEKKT--KREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHcccccchhhH-HHHHHHHHHHHHHHHHHHhccCCC--cceeehhHHHHHHHHHHHHHHhc
Confidence            55555555666 3333223 233667999999999999999884  44454456788888888877653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.73  E-value=1.2e-05  Score=77.04  Aligned_cols=250  Identities=16%  Similarity=0.122  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH------HHHH-------hhhhhH----HHHHHHHHHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAY-------AVNKAW----VIGFLMDIFGALLML   63 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~~l-------lr~p~W----~~G~~l~~~G~~~~~   63 (341)
                      +.++.+.+++.++++.+...-|.+....|+... -.|.      +.-+       .+++.|    +.|+. ......+..
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence            357889999999999999999988776554321 0110      0001       112223    45543 455566677


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019390           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF  143 (341)
Q Consensus        64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (341)
                      .++...|.....-+..+..+++.+++    +||.+  ++.+++++..|+..+...+.+..  ..+..-. ...+..+   
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~~--~~~~~G~-ll~l~aa---  157 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDVS--HVDLTGA-ALALGAG---  157 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCcc--cCChHHH-HHHHHHH---
Confidence            88888888877655555666666555    25544  44555666777765542221111  1111100 0111111   


Q ss_pred             HHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCcc-chhhH-HHHHHHHHHHHHH
Q 019390          144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFP-TMLVP-VCISISICCSGTG  221 (341)
Q Consensus       144 ~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~-~~~~p-~~l~~~v~~~~~g  221 (341)
                      ..........|+..++..     ...-..+...+++...   ..+      . ..++... ....+ ..+|..+++++.+
T Consensus       158 ~~~a~~~v~~r~~~~~~~-----~~~~~~~~~~~~~~l~---~~~------~-~~~~~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        158 ACWAIYILSGQRAGAEHG-----PATVAIGSLIAALIFV---PIG------A-LQAGEALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             HHHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHH---HHH------H-HccCcccCCHHHHHHHHHHHHHHHHHH
Confidence            111112222333322111     0011111122222211   100      0 0011000 11111 2356778888999


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          222 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       222 ~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      ++++++++|+-++..++.. ...+|+++.++|+.+|||+.+.  .    ...|.++++.|++...
T Consensus       223 ~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~--~----~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTL--I----QWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcH--H----HHHHHHHHHHHHHHHH
Confidence            9999999999987666654 5789999999999999998733  3    3467777777777664

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.54  E-value=1.6e-06  Score=72.22  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHhhcCchhhhhhhhhHHH
Q 019390            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIG--FLMDIFGALLMLRALSQAPVSVIQPVSGCGLA   83 (341)
Q Consensus         6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G--~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv   83 (341)
                      ++-+++.++-..|+.+-|++.+..|....        -.++.++.+  +......+.+...+++..|+++..|+..++.+
T Consensus         4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~~~--------~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v   75 (111)
T PRK15051          4 LTLVFASLLSVAGQLCQKQATRPVAIGKR--------RKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFV   75 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence            44566777888899999998765542110        011223333  36778899999999999999999999999999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        84 ~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      .+.+++.+++|||++.++|+|+++++.|+++++
T Consensus        76 ~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         76 WVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998774

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.49  E-value=1.5e-05  Score=76.26  Aligned_cols=67  Identities=15%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ..|+. ....+.++..++...+.+..|=+.++..+++.+++.+++|||+++++|.|+.+.+.|+....
T Consensus        70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            36666 47778899999999999999999999999999999999999999999999999999997653

specificities overlap.

>TIGR00688 rarD rarD protein

Probab=98.48  E-value=8.8e-05  Score=69.24  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-hhHH------HH-------------HHhh---hhhHHH----HHHHHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IR-------------AYAV---NKAWVI----GFLMDI   56 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~-------------~llr---~p~W~~----G~~l~~   56 (341)
                      ++.+.++++++++...+..|.. .+.++... -.|.      +.             +..+   ++.|+.    .-.+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            6788999999999999998873 33333211 0010      00             0011   122221    122255


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHH
Q 019390           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA  136 (341)
Q Consensus        57 ~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~  136 (341)
                      ....+...|+...|.....-+..+..+++.+++.+++|||+++++|.++.+...|+..+..++ ++    ..     +..
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~~----~~-----~~~  151 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-GS----LP-----WEA  151 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-CC----ch-----HHH
Confidence            667888999999999999999999999999999999999999999999999999987664221 11    11     112


Q ss_pred             HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhhhhccCccchhhHHHHHHHHH
Q 019390          137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFVFLEQGFPTMLVPVCISISIC  216 (341)
Q Consensus       137 ~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~~~~~p~~l~~~v~  216 (341)
                      +..++   +...+....||.++...       .....+...-..++   ....... .. ......+...++..++...+
T Consensus       152 l~aa~---~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~~~~~~~~~l~~~g~  216 (256)
T TIGR00688       152 LVLAF---SFTAYGLIRKALKNTDL-------AGFCLETLSLMPVA---IYYLLQT-DF-ATVQQTNPFPIWLLLVLAGL  216 (256)
T ss_pred             HHHHH---HHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHH---HHHHHHh-cc-CcccccCchhHHHHHHHHHH
Confidence            22111   11112223344332111       01111111111111   1000000 00 00000111112222223334


Q ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 019390          217 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA  256 (341)
Q Consensus       217 ~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~v  256 (341)
                      .+..++++.+++++.-++..++.. ...+|++++++|..+
T Consensus       217 ~t~i~~~l~~~a~~~~~a~~~s~~-~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       217 ITGTPLLAFVIAANRLPLNLLGLL-QYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHHHHh
Confidence            577899999999999997666544 578999999988754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.48  E-value=2e-05  Score=77.59  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             hhhhhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        43 lr~p~W~--~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      +++|.|.  .=-.+|+.|=-+...||.+-+++-+|=+-..+.+++.+++..++|+|.+..+|.|+.+|+.|+.++.
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            4455554  3335788888889999999999999999999999999999999999999999999999999988765

Some of the sequences in this family are annotated as putative membrane proteins.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.47  E-value=1.2e-06  Score=72.56  Aligned_cols=67  Identities=27%  Similarity=0.399  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019390           51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (341)
Q Consensus        51 G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~  118 (341)
                      |.+....++.+...|+.+.| ..+.++..++.+++.+++..++|||+++++|.++.++.+|++++...
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            44555588999999999999 58899999999999999999999999999999999999999888643

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.47  E-value=1.6e-06  Score=73.88  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=89.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-cchhHHHH-------HHh-------------hhhhHH-HHHHHHHHH
Q 019390            1 MWELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIR-------AYA-------------VNKAWV-IGFLMDIFG   58 (341)
Q Consensus         1 ~~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l~-------~ll-------------r~p~W~-~G~~l~~~G   58 (341)
                      |.-.+..|+++|++++...+.-|.+-+...+. .---|.+.       -.+             |+..++ .+-+.-+++
T Consensus         1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            44467889999999999999999998754321 10001100       011             222232 333667888


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      +.+.+.|+..++.+.|-|+--.|++++..+|..++|||+|..+|+|+.+++.|.++++
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999999987653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.47  E-value=8.7e-05  Score=68.73  Aligned_cols=207  Identities=23%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019390           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (341)
Q Consensus        50 ~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~-~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~  128 (341)
                      .+......+..+...++...|....+++..+..+++.+++. .++|||+++++|.++.....|++.+..++..+...  .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~  152 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--S  152 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--H
Confidence            66777788888899999999999999999999999999997 77799999999999888899998887544333211  0


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHhhccchhhhhHHHHHHHHHH-HHHHHHhhhcchhhhHHhhhhhhhhhccCcc-ch
Q 019390          129 IFQLPWLAFVVSILFVLLNGW-LRICKHQRREQEMIEFEVVEEII-YGLESGILFGNFRMASVISKLGFVFLEQGFP-TM  205 (341)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~r~~~~~~~~~~~~a~~-~g~aaG~~fG~~~~~a~l~K~~~~~~~~g~~-~~  205 (341)
                      ..-. +..+...+    ..+. ....++..+...      ..... +...   ..+   .... ..   ...+.+.. ..
T Consensus       153 ~~g~-~~~l~a~~----~~a~~~~~~~~~~~~~~------~~~~~~~~~~---~~~---~~~~-~~---~~~~~~~~~~~  211 (292)
T COG0697         153 LLGL-LLALAAAL----LWALYTALVKRLSRLGP------VTLALLLQLL---LAL---LLLL-LF---FLSGFGAPILS  211 (292)
T ss_pred             HHHH-HHHHHHHH----HHHHHHHHHHHhcCCCh------HHHHHHHHHH---HHH---HHHH-HH---HhccccccCCH
Confidence            0000 11111111    1111 122232211100      01111 1111   000   0000 00   01111111 11


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019390          206 LV-PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL  284 (341)
Q Consensus       206 ~~-p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~  284 (341)
                      .. ....+..++.+..+++++.++++..++..++.. ...+|+.+..++..++||..+..      ...|..+++.|++.
T Consensus       212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l  284 (292)
T COG0697         212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL-SLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLL  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHH
Confidence            11 222334444455789999999999886544433 47899999999999999987443      24565777777766


Q ss_pred             Hh
Q 019390          285 LV  286 (341)
Q Consensus       285 l~  286 (341)
                      ..
T Consensus       285 ~~  286 (292)
T COG0697         285 AS  286 (292)
T ss_pred             Hh
Confidence            54

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.40  E-value=1.7e-06  Score=72.53  Aligned_cols=103  Identities=20%  Similarity=0.329  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhhccCCCCcch---hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390           12 TAGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (341)
Q Consensus        12 A~~~~~g~vlQ~~aa~~~p~~~~~---~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~   87 (341)
                      +++-+..+-+-||+++..++...+   ...+..+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            345567778888888764432211   2455679999999999999999999999999999999999997 999999999


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhh
Q 019390           88 FSHFYLKEVMNAVDWMGITLAGIGTIG  114 (341)
Q Consensus        88 ls~~~l~~rl~~~~w~gv~~~~~Gl~~  114 (341)
                      .+.++.+|..+++.|+|+.+++.|+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeee
Confidence            996666666677889999999988753

Many members are annotated as potential transmembrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.25  E-value=0.00038  Score=68.66  Aligned_cols=206  Identities=15%  Similarity=0.143  Sum_probs=112.1

Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHH
Q 019390           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFV  138 (341)
Q Consensus        59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~  138 (341)
                      ...+..++...+++..|=+-+++.+++++++.+++|||++++.|.++.+.+.|+.+...+ |.+       ..+.+..+.
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~-~~~-------~~~~G~~~~  199 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK-ELH-------FTWLAFWCA  199 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc-cch-------hHHHHHHHH
Confidence            445568999999999999999999999999999999999999999999999999886532 111       112111111


Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHH--HHHHhhhcchhhhHHh-h---hhhhhhhc--cCccchhhH
Q 019390          139 VSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYG--LESGILFGNFRMASVI-S---KLGFVFLE--QGFPTMLVP  208 (341)
Q Consensus       139 ~~~~~~~l~~~~~~~~~~r~~~~~~--~~~~~~a~~~g--~aaG~~fG~~~~~a~l-~---K~~~~~~~--~g~~~~~~p  208 (341)
                      . +..+.........|+.-++....  .....  -.|.  ...|.++-   +--.. .   +.......  ..+......
T Consensus       200 l-~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~---lp~~~~~e~~~~~~~~~~~~~~~~~~~~~  273 (350)
T PTZ00343        200 M-LSNLGSSLRSIFAKKTMKNKSEIGENLTAS--NIYMLLTLIASLIS---LPLVLFFEGKKWVPVWTNYTANMTNYTKG  273 (350)
T ss_pred             H-HHHHHHHHHHHHHHHHhcccccccccCCHH--HHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHhhhcccccchH
Confidence            1 11111111112223221110000  00000  1222  22222222   11111 1   10000000  011111111


Q ss_pred             HHHHHHHHHHHHHHHHHHH----HhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019390          209 VCISISICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL  284 (341)
Q Consensus       209 ~~l~~~v~~~~~g~~l~q~----Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~  284 (341)
                      ..++. ++.+...++++|.    +++.=++...+.. ....|++++++|+++|||+...  .    ..+|.++++.|+++
T Consensus       274 ~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~-~~lk~V~~iv~s~l~~ge~lt~--~----~~iG~~lii~Gv~l  345 (350)
T PTZ00343        274 IIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVA-NTLKRVVIIVSSIIIFQTQVTL--L----GYLGMAVAILGALL  345 (350)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHhhhhHHHhCCCCch--H----hHHHHHHHHHHHHH
Confidence            22333 3445555666663    6665554433333 5689999999999999998733  2    35688888888877


Q ss_pred             Hh
Q 019390          285 LV  286 (341)
Q Consensus       285 l~  286 (341)
                      .+
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.05  E-value=0.001  Score=62.76  Aligned_cols=202  Identities=21%  Similarity=0.188  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCC----CC
Q 019390           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQ----EP  124 (341)
Q Consensus        49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~----~~  124 (341)
                      ..=-+++.+.=.++..+++..|-+.-|=+.-..+++|++++.+++|+|+++++|.++.+.+.|+..+..++...    +.
T Consensus        21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~  100 (244)
T PF04142_consen   21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSS  100 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccc
Confidence            34556788999999999999999999999999999999999999999999999999999999998775221111    10


Q ss_pred             Cc-----cchhhHHHHHHH-HHHHHHHHHHHH--HHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhhhhhh
Q 019390          125 SS-----ISIFQLPWLAFV-VSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVISKLGFV  196 (341)
Q Consensus       125 ~~-----~~~~~~~~~~~~-~~~~~~~l~~~~--~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K~~~~  196 (341)
                      ..     .......+...+ +....-.+.+.+  ++.|+...+      .-.+-+-+ ..-|+.+.   +.....+-...
T Consensus       101 ~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s------~~~~N~qL-~~~gi~~~---~~~~~~~~~~~  170 (244)
T PF04142_consen  101 SSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS------LWIQNMQL-YLFGILFN---LLALLLSDGSA  170 (244)
T ss_pred             cccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh------HHHHHHHH-HHHHHHHH---HHHHhcccccc
Confidence            00     011111111111 111111122211  223333211      11233333 23445545   44444442222


Q ss_pred             hhccCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019390          197 FLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLP  262 (341)
Q Consensus       197 ~~~~g~~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~  262 (341)
                      ..+.|+..-++++.+.+...-+..|+...- -++.-+ .+.=..++..+.++..++...+||.+..
T Consensus       171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva~-v~Kyad-nI~K~fa~a~siv~t~~~s~~lf~~~~s  234 (244)
T PF04142_consen  171 ISESGFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYAD-NIVKGFATAVSIVLTAVLSVLLFGFPPS  234 (244)
T ss_pred             cccCCchhhcchHHHHHHHHHHHhhHHHHH-HHHHHh-HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            234454444455554443334445554332 445444 2333444556677778888889988763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.66  E-value=0.0014  Score=55.50  Aligned_cols=94  Identities=18%  Similarity=0.258  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390            9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (341)
Q Consensus         9 l~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~   87 (341)
                      +++.++=-.++...|.+....              +..+|+..+++..+.|.+-..|++..|+++..|+- ..+.+.+..
T Consensus         8 ~~Ai~~Ev~~t~~LK~s~g~~--------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~   73 (120)
T PRK10452          8 ALAIATEITGTLSMKWASVSE--------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITL   73 (120)
T ss_pred             HHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence            344555556777776652111              12336788889999999999999999999999996 699999999


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           88 FSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        88 ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      .+.++++|+++..+|.|+.++..|++++-
T Consensus        74 ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         74 FSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998875

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.66  E-value=0.001  Score=63.69  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhH-H-------HHHHh------hhh-----hHHHHHHHHHHHHHHHH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-V-------IRAYA------VNK-----AWVIGFLMDIFGALLML   63 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~-~-------l~~ll------r~p-----~W~~G~~l~~~G~~~~~   63 (341)
                      +++++++.++++++...++.|+..++.+.....-. .       .....      .++     .++.|+...++++.++.
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999998887654333210000 0       00011      111     13577788889999999


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        64 ~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      .+++..|-+.+.++..++.+++.+++..+++|+++..+|+|.+++..|.+...
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988887765

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.54  E-value=0.021  Score=55.14  Aligned_cols=212  Identities=13%  Similarity=0.207  Sum_probs=116.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch--hh-hhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VI-QPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (341)
Q Consensus        37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~--lV-QPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl  112 (341)
                      +.+++..|||+=+....+...=...|..=+-.+|-.  +. ..++ -++.++..+++..++|||+++.+|+++.+..+|+
T Consensus        60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV  139 (293)
T COG2962          60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV  139 (293)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            456668888877777766666666677666666544  11 1222 3455588999999999999999999999999998


Q ss_pred             hhhc-cCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhh
Q 019390          113 IGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGNFRMASVIS  191 (341)
Q Consensus       113 ~~l~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~  191 (341)
                      .... ..+           ++||.++..+..    .+.|...|+.-.              +....|.+.=   +.-.+-
T Consensus       140 ~~~~~~~g-----------~lpwval~la~s----f~~Ygl~RK~~~--------------v~a~~g~~lE---~l~l~p  187 (293)
T COG2962         140 LIQTWLLG-----------SLPWVALALALS----FGLYGLLRKKLK--------------VDALTGLTLE---TLLLLP  187 (293)
T ss_pred             HHHHHHcC-----------CCcHHHHHHHHH----HHHHHHHHHhcC--------------CchHHhHHHH---HHHHhH
Confidence            7643 221           123444443332    222332333211              1112222211   111110


Q ss_pred             h-hhh--hhhccC-c---cchhhHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 019390          192 K-LGF--VFLEQG-F---PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA  264 (341)
Q Consensus       192 K-~~~--~~~~~g-~---~~~~~p~~l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~  264 (341)
                      - ...  -..+++ +   +...+...+......+..-+.+...|-++=|- ...-.....+|..=.++++.++||+.+.+
T Consensus       188 ~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpl-s~~G~lqYi~Ptl~fllav~i~~E~~~~~  266 (293)
T COG2962         188 VALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPL-STLGFLQYIEPTLMFLLAVLIFGEPFDSD  266 (293)
T ss_pred             HHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            0 000  011111 0   01111222222233345556777767676662 22222366788888999999999999665


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhh
Q 019390          265 PTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       265 ~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      -      ..+++.|-.++++.+.
T Consensus       267 ~------~~~F~~IW~aL~l~~~  283 (293)
T COG2962         267 Q------LVTFAFIWLALALFSI  283 (293)
T ss_pred             H------HHHHHHHHHHHHHHHH
Confidence            3      4566677776666554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.52  E-value=0.0017  Score=60.07  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--chh-HH--------HHHHhh-------hhhH--H--HHHHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FKL-KV--------IRAYAV-------NKAW--V--IGFLMDIFGA   59 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~--~~~-~~--------l~~llr-------~p~W--~--~G~~l~~~G~   59 (341)
                      +.++.++++++++++...+++|+..++.+...  ... +.        ...+..       ...|  +  .|......++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            35889999999999999999999876544211  100 00        001111       1123  2  4555567899


Q ss_pred             HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390           60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (341)
Q Consensus        60 ~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl  112 (341)
                      .++..++...|...+..+..++.+++.+++..++||+++..+|.|+.++..|+
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988775

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.48  E-value=0.00086  Score=54.00  Aligned_cols=84  Identities=20%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019390           10 AATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (341)
Q Consensus        10 ~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~   87 (341)
                      ++.++...++...|...               -.+++.|. ..+......+.+-..|++..|++++.|+. ..+.+.+.+
T Consensus         8 ~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~   72 (93)
T PF00893_consen    8 LAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTL   72 (93)
T ss_dssp             HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            44455566777777631               13344444 45558889999999999999999999997 599999999


Q ss_pred             HHHHHhccccchhhHHHHHHH
Q 019390           88 FSHFYLKEVMNAVDWMGITLA  108 (341)
Q Consensus        88 ls~~~l~~rl~~~~w~gv~~~  108 (341)
                      .+..++||++|..+|.|+.++
T Consensus        73 ~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   73 VGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHH--------HHHHHHH
T ss_pred             HHHHHhCCCCCHHHHhheeeC
Confidence            999999999999999998763

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.42  E-value=0.0024  Score=53.27  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 019390            7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI   84 (341)
Q Consensus         7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~-W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~   84 (341)
                      +=+++.++--.++...|.+..               .+++. ++..++..++.|.+-..|+...|+++..|+- ..+.+.
T Consensus         6 ~L~~a~~~Ev~~~~~lK~s~g---------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~   70 (110)
T PRK09541          6 YLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVL   70 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            334556676777777776521               23333 3577888899999999999999999999995 689999


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        85 t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      +.+.+.++++|+++..++.|+.++..|++++-
T Consensus        71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998874

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.41  E-value=0.0025  Score=61.07  Aligned_cols=112  Identities=10%  Similarity=0.048  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----h-hHHHH-HHh-------hhh-hHH----HHHHHHHHHHHHHHH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K-LKVIR-AYA-------VNK-AWV----IGFLMDIFGALLMLR   64 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~-~~~l~-~ll-------r~p-~W~----~G~~l~~~G~~~~~~   64 (341)
                      .+..+++.+++|++.+++++||-.++.+....    . .-... ...       -++ .|+    .| ...++++.++..
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            37789999999999999999997654332210    0 00000 000       111 121    23 245667888999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        65 AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      +++..|.+.+.++.-...+++.+++..+++|+++..+|+|++++..|+.+.
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999999998887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.39  E-value=0.056  Score=52.03  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        47 ~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      .|+.=..++.++..++-.||.+.|...-+=+=.+.++.+.+++..++|+|.+++||.++.++++|+....
T Consensus        66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            3555557788888999999999999887777799999999999999999999999999999999998876

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.35  E-value=0.0015  Score=61.96  Aligned_cols=111  Identities=18%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCc----c-hhH-----H---HHHH--------hhhhhH----HHHHHHHHHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-KLK-----V---IRAY--------AVNKAW----VIGFLMDIFG   58 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~-~~~-----~---l~~l--------lr~p~W----~~G~~l~~~G   58 (341)
                      ++.+++++++|++..+++.|+...+.++..    . .-.     .   ....        ..++.|    +.+.....++
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            566789999999999999888654333211    0 000     0   0000        001122    2445566778


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (341)
Q Consensus        59 ~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~  114 (341)
                      +.+...+++..|.+.+.++.-.+.+++.+++.+++||+++..+|+|.+++..|+..
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            88999999999999999999999999999999999999999999999999998765

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.26  E-value=0.0068  Score=58.11  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-chh----HH-------HHHHh-------------hhhh-HH----HH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS-FKL----KV-------IRAYA-------------VNKA-WV----IG   51 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~~----~~-------l~~ll-------------r~p~-W~----~G   51 (341)
                      +.++.+++.++++++...++|||-.++.++.. ...    ..       ...+.             .++. |+    .|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            35889999999999999999999654322211 000    00       00000             0112 22    35


Q ss_pred             HHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        52 ~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      +...++++.++..++...+-.-+.++.....+++.+++..+++|+++..+|+|.++++.|+.+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            5666788888888887777777888888888899999999999999999999999888887654

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.25  E-value=0.00076  Score=54.59  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        49 ~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      ..|.+....++.+...++...|.+.+.++..++.+++.+++..++||+++.++|.|+.+++.|+..+
T Consensus        58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3555556888999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.19  E-value=0.0071  Score=57.77  Aligned_cols=114  Identities=11%  Similarity=0.133  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh----H-H---HHHHh------h--h-hhHH----HHHHHHHHHHHH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K-V---IRAYA------V--N-KAWV----IGFLMDIFGALL   61 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~----~-~---l~~ll------r--~-p~W~----~G~~l~~~G~~~   61 (341)
                      .+..+++++++|++..++.+||..+..+.....-    . .   .....      .  + ..|+    .|+...++++.+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999654322110000    0 0   00000      0  1 1232    455567788899


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ...++...|.+.+..+..++.+++.+++..++||+++..+|+|+.++..|+..+.
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.09  E-value=0.007  Score=60.20  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-ch---------hHHHHHHhhh----hhHH-------HHHH----HHHH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK---------LKVIRAYAVN----KAWV-------IGFL----MDIF   57 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~---------~~~l~~llr~----p~W~-------~G~~----l~~~   57 (341)
                      ++..+++.+++|+++..++|+|-.++-|+.. ..         +-.+..+...    +.|+       ..++    ...+
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l  268 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence            4788999999999999999999877655421 00         0001111211    1121       1122    1234


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        58 G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ++.++..+++..+-+.+-...-+..+|+++++..+++|+++..+++|.+++..|+....
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            77778888888888888888888999999999999999999999999999999997765

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.91  E-value=0.32  Score=46.75  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHhhhc
Q 019390           54 MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG  116 (341)
Q Consensus        54 l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~----gv~~~~~Gl~~l~  116 (341)
                      +-.+|-.+|+.++...-++..-|+. ...|+.+.+.+.+++||.-+..+|+    +++++++|...-+
T Consensus        54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            4567888899999999999999997 8899999999999999999998885    4445556655444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.87  E-value=0.022  Score=47.45  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=61.7

Q ss_pred             hhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           43 AVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        43 lr~p~W~-~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      .++|.|. .-.+.....|.+...|++..|+.+..++- ..+.+.+.+.+.+++||+++..+|.|++++..|++++
T Consensus        32 f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         32 FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444444 34556677888889999999999999996 6899999999999999999999999999999998775

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.85  E-value=0.019  Score=47.52  Aligned_cols=68  Identities=24%  Similarity=0.265  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        48 W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      +..-++.....|.+...|+...|+.+..++- ..+.+.+.+.+.+++||+++..+|.|+.++..|++++
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            4466778888899999999999999999996 5999999999999999999999999999999998876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.022  Score=47.26  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        47 ~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      +.+...+.+.+.|.+...|+...|+.+..++- ..+.+.+++.+..+++|+++..+|+|+.+...|++++
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            34467788899999999999999999999994 8899999999999999999999999999999998876

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.65  E-value=0.67  Score=44.36  Aligned_cols=171  Identities=17%  Similarity=0.252  Sum_probs=87.2

Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHH
Q 019390           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI  141 (341)
Q Consensus        62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a~~~~~~~~~~~~~~~~~~~~~~~~  141 (341)
                      ...++...|+-+.-.+=-.+-+.-+.++    .|  +.+|..++++.++|+..+.-.+++.++  .|..   +..+. ..
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sR--r~~d~vwvaLAvlGi~lL~p~~~~~~~--lDp~---Gv~~A-l~  155 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SR--RLRDFVWVALAVLGIWLLLPLGQSVWS--LDPV---GVALA-LG  155 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHh----cc--chhhHHHHHHHHHHHHhheeccCCcCc--CCHH---HHHHH-HH
Confidence            4568888899887666322322222222    22  235655666677777666532222211  1111   11111 11


Q ss_pred             HHHHHHHHHHHhhccch-hhhhHHHHHHHHHHHHHHHHhhhcchhhhHHhhh-hhhhhhccCccchhhH----HHHHHHH
Q 019390          142 LFVLLNGWLRICKHQRR-EQEMIEFEVVEEIIYGLESGILFGNFRMASVISK-LGFVFLEQGFPTMLVP----VCISISI  215 (341)
Q Consensus       142 ~~~~l~~~~~~~~~~r~-~~~~~~~~~~~a~~~g~aaG~~fG~~~~~a~l~K-~~~~~~~~g~~~~~~p----~~l~~~v  215 (341)
                      ..++...+....+|..| .+.          --|++.|..     +.++.+- ++...  .| ..+++|    ..+.+.+
T Consensus       156 AG~~Wa~YIv~G~r~g~~~~g----------~~g~a~gm~-----vAaviv~Pig~~~--ag-~~l~~p~ll~laLgvav  217 (292)
T COG5006         156 AGACWALYIVLGQRAGRAEHG----------TAGVAVGML-----VAALIVLPIGAAQ--AG-PALFSPSLLPLALGVAV  217 (292)
T ss_pred             HhHHHHHHHHHcchhcccCCC----------chHHHHHHH-----HHHHHHhhhhhhh--cc-hhhcChHHHHHHHHHHH
Confidence            12233333333444332 211          113334443     3344433 33322  12 233444    3344445


Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019390          216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  263 (341)
Q Consensus       216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~  263 (341)
                      ..++.=+.+.|.|+++=+.-.-++. .--||..+.+.|.++|||+...
T Consensus       218 lSSalPYsLEmiAL~rlp~~~F~~L-lSLePa~aAl~G~i~L~e~ls~  264 (292)
T COG5006         218 LSSALPYSLEMIALRRLPARTFGTL-LSLEPALAALSGLIFLGETLTL  264 (292)
T ss_pred             HhcccchHHHHHHHhhCChhHHHHH-HHhhHHHHHHHHHHHhcCCCCH
Confidence            5556667899999998885333333 4569999999999999999833

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.47  Score=47.05  Aligned_cols=63  Identities=22%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           54 MDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        54 l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ++.+=--+|.++++..|-..=|...-.-..-|++++..+|+||+++++|.+..+...|+..+-
T Consensus       101 iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  101 IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            444444589999999999999999999999999999999999999999999999999987764

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.57  E-value=0.88  Score=45.30  Aligned_cols=115  Identities=17%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCC-C-----Cc-------------chhHHHHHHhhh---hhHHHHH---HHH
Q 019390            1 MWELICLTLAATAGNNIGKVLQKKGTVILP-P-----LS-------------FKLKVIRAYAVN---KAWVIGF---LMD   55 (341)
Q Consensus         1 ~~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p-~-----~~-------------~~~~~l~~llr~---p~W~~G~---~l~   55 (341)
                      +.+++...+++++|++.=.+-||+ .+.=+ +     .+             ...+.+..++++   .-|..++   ++=
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W   83 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW   83 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence            357899999999999999999999 33211 0     00             011223334442   2344443   355


Q ss_pred             HHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhcccc---chhhH----HHHHHHHHHHhhhc
Q 019390           56 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVDW----MGITLAGIGTIGVG  116 (341)
Q Consensus        56 ~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl---~~~~w----~gv~~~~~Gl~~l~  116 (341)
                      .+|-+.|..+.+..-+++-+|+. ...++++.++...+++|--   +..++    +|++++++|+.+.+
T Consensus        84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s  152 (345)
T PRK13499         84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG  152 (345)
T ss_pred             HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            66778899999999999999995 8899999999999998654   44444    57778888887765

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.47  E-value=0.081  Score=43.94  Aligned_cols=66  Identities=18%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019390          216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  288 (341)
Q Consensus       216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  288 (341)
                      ++....+++.+.++|.-|...+....+ .+++....+|..+|||+.+..      ..+|..++++|++.++.+
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~  110 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST  110 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence            344567888888999988544433334 788999999999999998443      357888999999988754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.41  E-value=0.054  Score=51.88  Aligned_cols=109  Identities=12%  Similarity=0.028  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCcc------hh-HHHH--HH--------hhhhh-HHH----HHHHHHHHHHHHHH
Q 019390            7 LTLAATAGNNIGKVLQKKGTVILPPLSF------KL-KVIR--AY--------AVNKA-WVI----GFLMDIFGALLMLR   64 (341)
Q Consensus         7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~------~~-~~l~--~l--------lr~p~-W~~----G~~l~~~G~~~~~~   64 (341)
                      +.+.++++|+...+++||...+......      .+ ....  .+        ..+|. |+.    +.+...+++.+...
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999997432211100      00 0000  00        01222 111    11134477888999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        65 AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      +++..|.+.+.++.-.+.+++.+++..+++|+++..+|.|++++..++.++
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987766554

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.38  E-value=0.0077  Score=51.72  Aligned_cols=67  Identities=34%  Similarity=0.481  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      ...+++..++++.=+|+|.|++..+. |-.-.+|+..+++++++|||+....      ...|..+|++|+++++
T Consensus        72 lSGla~glswl~Yf~ALk~G~as~Vv-Pldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          72 LSGLAGGLSWLLYFRALKKGKASRVV-PLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcceEE-EcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            34456677888888999999965443 3345689999999999999997443      2467889999887765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.35  E-value=0.05  Score=50.21  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchh-------HHH--HHHh---------hhhhHH--HHHHHHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVI--RAYA---------VNKAWV--IGFLMDIFGALL   61 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-------~~l--~~ll---------r~p~W~--~G~~l~~~G~~~   61 (341)
                      +.++.++++++++++...+++++-. +.+......       ..+  ....         ++..++  .|+...+.++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999876 322211100       000  0001         111111  344444567888


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        62 ~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ...++...|...+.++.....+++..++..+++|+++.++|+|++++..|.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999999988888877654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.76  E-value=0.059  Score=51.80  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHH---------hhh--------hhHH-HHHHHHHHHHHHHHHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAY---------AVN--------KAWV-IGFLMDIFGALLMLRA   65 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~l---------lr~--------p~W~-~G~~l~~~G~~~~~~A   65 (341)
                      ++++.-++ ..++...++-++.....|..-...+.+.+.         .++        +.|+ +=-.+-..|..++.-|
T Consensus        39 gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya  117 (346)
T KOG4510|consen   39 GLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYA  117 (346)
T ss_pred             CceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHH
Confidence            44556666 888888888888776655332112222221         122        2243 1123445677778888


Q ss_pred             HhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           66 LSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        66 L~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      |...|++=..=+.-.+.+||.+++..+||||.+..|-++......|++++.
T Consensus       118 ~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  118 LMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             HhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            888888766666677889999999999999999999999999999998765

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.34  E-value=0.31  Score=46.57  Aligned_cols=114  Identities=14%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCC-cchhHHHH--------------HHhhhhhHH-HHHHHHH----HHHHHH
Q 019390            3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVIR--------------AYAVNKAWV-IGFLMDI----FGALLM   62 (341)
Q Consensus         3 ~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l~--------------~llr~p~W~-~G~~l~~----~G~~~~   62 (341)
                      .++.+|+.+..|.+.=-+.-||..+..+.. +...+...              .-+.+|.=+ .++...+    +=|.++
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence            478899999999998888888887644322 11111111              122333322 4444333    345679


Q ss_pred             HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        63 ~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ..||+-.|-.----++++.-.+.++.+..+|||++|..||.++.+++.+..+..
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999988877654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.23  E-value=0.23  Score=47.68  Aligned_cols=111  Identities=22%  Similarity=0.141  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----hh-----HHH--HHH-----hhhhhHH----HHHHHHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KVI--RAY-----AVNKAWV----IGFLMDIFGALL   61 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~~-----~~l--~~l-----lr~p~W~----~G~~l~~~G~~~   61 (341)
                      +.++..+++|+++|+.-.+.=|+. . .++...    .-     ..+  .-+     ..+..+|    .|+. -.+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF-G-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc-C-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            468999999999998888776654 2 222211    00     000  011     0111222    5555 5778888


Q ss_pred             HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhhh
Q 019390           62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGV  115 (341)
Q Consensus        62 ~~~AL~-~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w----~gv~~~~~Gl~~l  115 (341)
                      .+.++. ..+.+..-++...+.+++.+++.+++||+.+++|+    +|++++..|+.++
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~  286 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL  286 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence            888888 88999999999999999999999999999999999    9999988887665

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=94.32  E-value=0.088  Score=50.95  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhhhccCCCCcchh--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH
Q 019390           13 AGNNIGKVLQKKGTVILPPLSFKL--KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH   90 (341)
Q Consensus        13 ~~~~~g~vlQ~~aa~~~p~~~~~~--~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~   90 (341)
                      .|.++=.++..|+.++....+++.  .....-++...++.=.++|+.|--++.+.|-+-..+--|=+=..-++|+.+++.
T Consensus        52 lCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst  131 (372)
T KOG3912|consen   52 LCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFST  131 (372)
T ss_pred             HHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHH
Confidence            677777788888776533221110  000012333456677889999999999999999999999999999999999999


Q ss_pred             HHhccccchhhHHHHHHHHHHHhhhc
Q 019390           91 FYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        91 ~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      -+|+++++.++|.|+..+.+|++.++
T Consensus       132 ~~Ln~ti~~~qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen  132 MFLNRTITGRQWLGILFVSLGLVIVG  157 (372)
T ss_pred             HHHhcccchhhHHHHHHHHhhhheee
Confidence            99999999999999999999998876

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=94.05  E-value=0.56  Score=38.41  Aligned_cols=63  Identities=29%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019390          219 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS  289 (341)
Q Consensus       219 ~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~  289 (341)
                      ..++.++..|++..+. .++ ...-.+|+...++|...|+|+.+..      ...+.+++..|++++...+
T Consensus        46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhhhh
Confidence            3667788889998884 333 4455699999999999999988554      2457778888998887543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=93.61  E-value=0.77  Score=43.83  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCcchh-----HH----HHHHhh-----------h--------hhHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYAV-----------N--------KAWVIG   51 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~--~~p~~~~~~-----~~----l~~llr-----------~--------p~W~~G   51 (341)
                      +.|.+++++++++++..++++||..+  +.++.....     ..    ......           +        ..|..+
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            35889999999999999999999765  322211100     00    000000           0        012112


Q ss_pred             HHHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           52 FLMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        52 ~~l~~~G~----~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      .......+    .+.+.++...+-.-..-.+...-+++.+++..+++|+++..+++|.+++..|+....
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            11111111    223345656666666666667777899999999999999999999999999987654

specificities overlap.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=93.50  E-value=0.27  Score=39.40  Aligned_cols=64  Identities=33%  Similarity=0.396  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390          215 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  285 (341)
Q Consensus       215 v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l  285 (341)
                      +++...++.+.++++|..++..++.. ...+|+.+.++|..+++|+.+.  .    ...|..+++.|++.+
T Consensus        61 ~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~i~~~~~~~e~~~~--~----~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   61 LLGTALAYLLYFYALKYISASIVSIL-QYLSPVFAAILGWLFLGERPSW--R----QIIGIILIIIGVVLI  124 (126)
T ss_pred             ccceehHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHcCCCCCH--H----HHHHHHHHHHHHHHH
Confidence            34457788889999999886555544 4579999999999999998733  2    345667777777665

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=92.23  E-value=0.85  Score=38.98  Aligned_cols=70  Identities=17%  Similarity=0.093  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHH--HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          211 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       211 l~~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv--~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      ++..+++...+++++..+++.-+...+.. .....++...+.+.  .+|||+....      ...|.+++++|++.+..
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp-~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAYP-LLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhcc
Confidence            45567788899999999999988544432 22233333444444  4899988332      45788999999999864

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=90.52  E-value=1.7  Score=43.06  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-h-hHH---H----------HHHhhhhhHHHHHHHHHHHHHH-HHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K-LKV---I----------RAYAVNKAWVIGFLMDIFGALL-MLRA   65 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~-~~~---l----------~~llr~p~W~~G~~l~~~G~~~-~~~A   65 (341)
                      .+|-+++++||.+||+.+++|++-.++.|.... . .+.   +          +.-+++-.|=.......+|+.+ ++.-
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence            457789999999999999999999887653210 0 000   0          0112222233333444444443 5666


Q ss_pred             HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        66 L~~~Pl~l-------VQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      +.+.|+.+       +.-=+-++-..+++...++.|++++..-++|.+++.+|+++..
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            66666544       2222345566778889999999999999999999999998875

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=90.08  E-value=2.9  Score=34.78  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          215 ICCSGTGFYYQTRGLKHGRAIVVSTCA-AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       215 v~~~~~g~~l~q~Alq~G~a~~vs~~~-tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      +++-...|++..++++.=|..++ -+. +-...+...++|+.+|||+.  ++.    ...|..+++.|++.+-.
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iA-Yavw~GlG~v~~~l~g~~~f~e~~--~~~----~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIA-YAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHHHhc
Confidence            44556788888889998773211 111 22355566889999999988  433    35688899999998843

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=89.88  E-value=3.1  Score=34.70  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019390          214 SICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  285 (341)
Q Consensus       214 ~v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l  285 (341)
                      .++.-...|++..+++|.=|.- + .++  +-...+..+++|+.+|||+.  ++.    ...|..+++.|++.+
T Consensus        41 ~~~~~~~sf~~Ls~al~~lpvg-v-AYAvW~GiG~v~~~~ig~~~f~e~~--~~~----~~~gi~lIi~GVi~l  106 (109)
T PRK10650         41 SLAAVLAAFSALSQAVKGIDLS-V-AYALWGGFGIAATLAAGWILFGQRL--NRK----GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHhhCchH-H-HHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHh
Confidence            3445567899999999976621 1 122  33344555889999999988  433    456788999999876

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=89.86  E-value=1.3  Score=36.93  Aligned_cols=76  Identities=26%  Similarity=0.450  Sum_probs=64.2

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHh
Q 019390           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNA-VDWMGITLAGIGTI  113 (341)
Q Consensus        37 ~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl~-a~~lv~t~~ls~~~l~~rl~~-~~w~gv~~~~~Gl~  113 (341)
                      +.++.++.+..+|.=++++-.|..+.+.-|+-.|+++.-|+- +++..||+..+. .++|+... +...|..+++.|+.
T Consensus        44 qe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~-~LGE~~~g~~a~lGt~liv~Gi~  121 (125)
T KOG4831|consen   44 QEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGK-ALGEETQGGLALLGTSLIVFGIW  121 (125)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHH-HhccccccceeehhhhHHhhhhh
Confidence            356678899999999999999999999999999999999996 789999999884 56777765 45568877777763

>PRK11431 multidrug efflux system protein; Provisional

Probab=89.65  E-value=3.3  Score=34.20  Aligned_cols=64  Identities=22%  Similarity=0.271  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          215 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       215 v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      +++-...|++..+++|.=|.- + .++  +-...+..+++|+.+|||+.  ++.    ...|..++++|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~g-v-aYAvW~GiG~v~~~lig~~~f~e~~--~~~----~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVG-T-AYAVWTGIGAVGAAITGIVLLGESA--SPA----RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcH-h-HHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHhhh
Confidence            455678899999999976621 1 222  33455666889999999988  433    3567889999998874

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=88.47  E-value=10  Score=31.84  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccC----CCCc-c----------------------hhH---HHHHHhh-----h-hh
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVIL----PPLS-F----------------------KLK---VIRAYAV-----N-KA   47 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~----p~~~-~----------------------~~~---~l~~llr-----~-p~   47 (341)
                      |.++++.|.++.+.=.+++|+.-++.    ...+ .                      +++   ......+     . ..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            46789999999999999988877653    1110 0                      000   0000111     2 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019390           48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (341)
Q Consensus        48 W~~G~~l~~~G~~~~~~AL~~~---Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~  114 (341)
                      |+.-+..-..++..|.......   .-..-+=++...-+++.+++..+++|+++..++.|+.++..|...
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3333344455666665554332   222334445667788999999999999999999999999988754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=87.86  E-value=4.8  Score=34.12  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019390          215 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  286 (341)
Q Consensus       215 v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  286 (341)
                      +++-...|++..+++|.=|..++=..-+-...+...++|+.+|||+....      ..+|..+++.|++.+-
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            44556789999999997763222111122344555889999999988332      3568889999998884

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=87.69  E-value=12  Score=31.20  Aligned_cols=65  Identities=34%  Similarity=0.385  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          215 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       215 v~~~~~g~~l~q~Alq~G~a~~vs~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      +++-...|++...|+|+=|.-  ..++  +-...+..+++|+.+|||+.  ++.    ...+..++++|++.+-.
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvg--vAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLG--VAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHHHHHHHHHhhh
Confidence            344567788888899986621  1222  33445555889999999988  433    34677899999988743

>TIGR00803 nst UDP-galactose transporter

Probab=86.25  E-value=19  Score=32.63  Aligned_cols=46  Identities=9%  Similarity=0.049  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 019390          216 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLP  262 (341)
Q Consensus       216 ~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~  262 (341)
                      .....|-.+-.--++..+.... ...+..+++...++++.+|||+..
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~-~~~~~~~~~~s~lls~~~f~~~ls  205 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTK-SFVTALSIILSTLASVRLFDAKIS  205 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCcc
Confidence            3344443333334454443322 223677999999999999999863

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00803 nst UDP-galactose transporter

Probab=83.50  E-value=5.6  Score=36.20  Aligned_cols=111  Identities=14%  Similarity=0.065  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc----chhH---H---HHHH-------hh--------hhhHHHHHHHHH
Q 019390            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKLK---V---IRAY-------AV--------NKAWVIGFLMDI   56 (341)
Q Consensus         2 ~~~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~~~~---~---l~~l-------lr--------~p~W~~G~~l~~   56 (341)
                      +.++...+.+..+.+.+.+.|++.-+..+..-    ....   .   ....       ..        .+.+|.-.....
T Consensus        84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  163 (222)
T TIGR00803        84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV  163 (222)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence            34555666777778899999999865422110    0000   0   0000       00        122333334445


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019390           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (341)
Q Consensus        57 ~G~~~~~~AL~~~Pl~lVQPl~a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl  112 (341)
                      .|..+-...+...+-...-=...++.+++.+++.++++++++...|.|+.++..|+
T Consensus       164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~  219 (222)
T TIGR00803       164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT  219 (222)
T ss_pred             hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence            55555555555555556667778899999999999999999999999999887665

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=82.88  E-value=22  Score=35.04  Aligned_cols=37  Identities=11%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019390           79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (341)
Q Consensus        79 a~~lv~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l  115 (341)
                      ...-+++.+++..++||+++..+++|.+++..|+...
T Consensus       310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            3455678888999999999999999999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.79
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.55
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.36
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.83

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.79  E-value=7.2e-08  Score=78.85  Aligned_cols=100  Identities=17%  Similarity=0.217  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019390            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (341)
Q Consensus         4 ~v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl-~a~~l   82 (341)
                      ..++-+++.++...++.+.|++.      +        ..|.++++.+.+...+++.+...|++..|++.+.|+ ...+.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~------~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~   68 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc------C--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence            45566778888899999999863      1        113466788999999999999999999999999999 69999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhcc
Q 019390           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (341)
Q Consensus        83 v~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~a  117 (341)
                      +++.+++.+++||+++..+|.|+.+++.|++++..
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988864

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.55  E-value=1.4e-07  Score=80.29  Aligned_cols=98  Identities=17%  Similarity=0.233  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHH
Q 019390            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLA   83 (341)
Q Consensus         5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~l~~~G~~~~~~AL~~~Pl~lVQPl-~a~~lv   83 (341)
                      .++-+++.++...++.+.|++.      +        ..+.++++.|++..++++.+...|++..|++.+.|+ ..++.+
T Consensus         4 ~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv   69 (137)
T 2i68_A            4 YIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence            4455678888888999998863      1        123466779999999999999999999999999999 799999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019390           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (341)
Q Consensus        84 ~t~~ls~~~l~~rl~~~~w~gv~~~~~Gl~~l~  116 (341)
                      ++.+++.++++|+++..+|+|+++++.|++++.
T Consensus        70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998875

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.36  E-value=0.00094  Score=56.54  Aligned_cols=69  Identities=20%  Similarity=0.239  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      ..+++...++++.+++++..+...+....+...|+...++|+.+|||+....      ..+|.++++.|++++..
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            3455677889999999999996555444356789999999999999998543      35788899999998864

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.83  E-value=0.014  Score=47.19  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019390          213 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  287 (341)
Q Consensus       213 ~~v~~~~~g~~l~q~Alq~G~a~~vs~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  287 (341)
                      ..+++...++++.++++|..|...+....+-..|+...++|+.+|||+...  .    ..+|..+++.|++.+..
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~--~----~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhc
Confidence            334556778899999999999655544335678999999999999998833  3    35788899999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00