Citrus Sinensis ID: 019405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccccEEEEEEEcccccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEEccccEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEccccEEEEEccccccccccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEcccccccccEEEEEccccEEEEEEEccccccccHHEEcccccccHHcEEEEEEcccccccEEEEEEcccEEEEEEcccccEEEEEEEccccccccccccEEEEEEcccccccccccccEEEEEEcccEEEEEEEEEEcccccccccccEEEEcccccEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEcccccccccccccEEEccEEEEccccccEEEEEccccEEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEcEEEEEEcccccEEEEEccccEEEEEEccccHEEEEEcc
Coil and Loop (DISEMBL)
mprtttlecpgcpplraltfdSLGLIKVIEArgehggvpkvverwgdphssncvlaasiddsqndpLLAVARKNgltdilnplnGDLRVAIsnagdsgaqpeddgivGLHLFKrqreesssrsrtlltcttkgkasmrsIEVTKVSAESscstvkswnvcasgtiafskvdisekfslfggkgvevnvwdldkcekiwtakpppknslgiftptwftsaaflsiddhrkfvagtndhqvrlydtsaqrrpvmsfdfretpikavaeepdsfniyigngsgdlasvdirTGKLLGCfigkcsgsirsiarhptlpiiascgldsylrfwDIKTRQLLSAVCS
Flexible Loop (DISEMBL)
mprtttlecpgcpplralTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAgdsgaqpeddGIVGLHLFkrqreesssrsrtlltcttkgkasmrsievtkvsaesscstvkswnVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWtakpppknslGIFTPTWFTSAAFLSIDDHRKFVAGtndhqvrlydtsaqrrpvmsfDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Low Complexity Region (SEG)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKrqreesssrsrtlltcttKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Disordered region (IsUnstruct)
*******ECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI**************IVGLHL**************************************SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA***
Disordered Region (DISOPRED)
*****T*ECPGCPPLRALTFDSLGLIKVIEARGE**G**KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC*
Disordered Region (DISEMBL)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR************LTCTTKGKASMRSIE*************KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Disordered Region (DISPRO)
****TTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q58D06	385	WD repeat-containing prot	yes	no	0.439	0.389	0.406	1e-24
Q6RFH5	385	WD repeat-containing prot	yes	no	0.439	0.389	0.393	2e-23
Q8VCG3	384	WD repeat-containing prot	yes	no	0.434	0.385	0.398	4e-23
Q54FW9	508	WD repeat-containing prot	yes	no	0.466	0.312	0.292	7e-16
Q5A2T0	406	Ribosome biogenesis prote	N/A	no	0.425	0.357	0.285	8e-09
Q6BUJ2	430	Ribosome biogenesis prote	yes	no	0.416	0.330	0.301	1e-08
A5DX41	447	Ribosome biogenesis prote	N/A	no	0.413	0.315	0.275	1e-08
A3LVX0	430	Ribosome biogenesis prote	yes	no	0.442	0.351	0.288	5e-08
O94698	387	Ribosome biogenesis prote	yes	no	0.442	0.390	0.275	7e-08
A5DKC4	398	Ribosome biogenesis prote	N/A	no	0.633	0.542	0.249	7e-08

>sp|Q58D06|WDR74_BOVIN WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct: 149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
           G  +GS+R +  HP+ P++ASCGLD  LR   I+ 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRN 300

Bos taurus (taxid: 9913)

>sp|Q6RFH5|WDR74_HUMAN WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct: 149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
           G  +GS+R +  HP+ P++ASCGLD  LR   I+ 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQN 300

Homo sapiens (taxid: 9606)

>sp|Q8VCG3|WDR74_MOUSE WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 86/153 (56%), Gaps = 5/153 (3%)

Query: 181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct: 150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query: 240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct: 208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query: 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct: 268 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 299

Mus musculus (taxid: 10090)

>sp|Q54FW9|Y0555_DICDI WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum GN=DDB_G0290555 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 95/171 (55%), Gaps = 12/171 (7%)

Query: 173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA 232
           ++KF+ FGGK V + +WDL+K  K ++AK    + L +  P       +++ D   K + 
Sbjct: 173 NDKFA-FGGKDVNLTIWDLEKQVKTYSAKFK-HDFLNLQEPVSINVVKYMNDD---KILI 227

Query: 233 GTNDHQVRLYD--TSAQRRPVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIR 288
           G+ D +++ YD  +   R   +   F + PI+++    + + +  Y  +  G +   D+R
Sbjct: 228 GS-DFRIKAYDLRSKTNRSSFLDVSFSKHPIQSIQYTNQKEHY-FYASDSIGKVFCYDVR 285

Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           T + +G F    +GS++ IA HPTLP++A+ GLD +LR +++  R++L  +
Sbjct: 286 TSRQVGSF-KDSAGSVKDIAIHPTLPLLATVGLDRHLRVYNLDNRKMLHKI 335

Dictyostelium discoideum (taxid: 44689)

>sp|Q5A2T0|NSA1_CANAL Ribosome biogenesis protein NSA1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NSA1 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252
           K + I+ AK    + L +  P W T+  F       K V  T   Q+RLYDT+  R+P  
Sbjct: 192 KPQIIFKAKNVRNDHLELRVPIWITNILFAKAAKGYKLVTSTRYGQIRLYDTAEGRKPRK 251

Query: 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS------VDIR---------------TGK 291
            +   E PI  +    D     I   +  L +      VD +                 K
Sbjct: 252 DYKVTEKPIVTLTFANDEQTEIIVTDTHSLIAKYSLTQVDEKAFKTISASAGEIVKPVPK 311

Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           LLG F G  +G+  +   H    I+A  GLD YLR +D+++R++L+ V
Sbjct: 312 LLGKFTGGNTGA--TFGVHAYERIVAFAGLDRYLRVFDLESREILAKV 357

Involved in the biogenesis of the 60S ribosomal subunit.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6BUJ2|NSA1_DEBHA Ribosome biogenesis protein NSA1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NSA1 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254
           I+TA+    + L +  P W +S  F      D  KF+  T   QVR+YDT+  +RP+  +
Sbjct: 193 IFTARNVKNDHLDLRPPIWISSILFFEEKPKDGYKFLTSTRYGQVRIYDTTHGKRPIQDY 252

Query: 255 DFRETPIKAV----AEEP----DSFNIYIGNGSGDLASVDIRT------------GKLLG 294
              E PI  +    +EE     D+ N+        + S   +T             KLLG
Sbjct: 253 KVCEKPIVTLNFADSEEEVIVSDTHNLVAKYSLAQIDSKAFKTHSASAGEITKPVSKLLG 312

Query: 295 CF-IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
            F  G  +G+I  +       II++ GLD YLR +DI +R++L+ V
Sbjct: 313 KFSAGGNTGAIVGVNIFDD-EIISTGGLDRYLRTYDISSREILAKV 357

Involved in the biogenesis of the 60S ribosomal subunit.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A5DX41|NSA1_LODEL Ribosome biogenesis protein NSA1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=NSA1 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 26/167 (15%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253
           ++ AK    + L +  P W T+  F +    +   K +  T   Q+R+YDT   R+PV  
Sbjct: 237 LFKAKNVSNDHLNLRVPIWITNILFFTNNVTNGQYKLITSTRYGQLRIYDTKHGRKPVKD 296

Query: 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLA---SVDI------RTG------------KL 292
           +    TPI  +    D     +   + +L    S+DI      +T             KL
Sbjct: 297 YPVSTTPILTLLFGNDKETEVVLTDTQNLMAKYSLDIIDDKAFKTNSASAGDIIKPVPKL 356

Query: 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           LG + G  +G+  ++A+     I+A  GLD YLR +D+++RQ+L+ V
Sbjct: 357 LGKYTGGNTGA--TLAQQVYEGIVAFAGLDRYLRVFDVESRQILAKV 401

Involved in the biogenesis of the 60S ribosomal subunit.

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (taxid: 379508)

>sp|A3LVX0|NSA1_PICST Ribosome biogenesis protein NSA1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=NSA1 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 36/187 (19%)

Query: 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFVAGT 234
            +F  + VE N     K E ++TAK    + L +  P W T   F +    +  KF+  T
Sbjct: 185 EIFDTENVENNF----KSEVVFTAKNVKNDHLDLRVPVWITKIRFFTEQPEKGYKFITAT 240

Query: 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVA---EEP------DSFNIYIGNGSGDLASV 285
           +  Q+R+YDT+  RRPV  F   + PI  +    EE       DS N+ I   S  L  V
Sbjct: 241 HYGQIRVYDTNHGRRPVRDFTVCQKPILTLTFANEEESEVIISDSHNL-IAKHS--LIQV 297

Query: 286 DIR---------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330
           D +                 KLLG F+ +  G+   +     L  + + GLD YLR +D+
Sbjct: 298 DDKASKTHSASAGDIIKPVAKLLGRFVDQF-GATYGVEVGEGL--LVTGGLDRYLRVFDL 354

Query: 331 KTRQLLS 337
            +R++++
Sbjct: 355 ASREIVA 361

Involved in the biogenesis of the 60S ribosomal subunit.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|O94698|NSA1_SCHPO Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa1 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL----------SIDDHR---KFV 231
           E+ +W  +   K++  K    +SL +    W T   F           S DD      F 
Sbjct: 167 ELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHFA 226

Query: 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291
             T+  Q+R YDT   RRPV +FD   +P+  V   P    +Y  +    ++  D    K
Sbjct: 227 TITHYGQLRFYDTKHGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHSKKK 286

Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338
           ++G F G   G+  SI  H    ++A  GLD  +R +D   + L +A
Sbjct: 287 VIGRFQG-VKGAPSSI--HCLGNVVAITGLDRNVRIFDADRKPLANA 330

Involved in the biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A5DKC4|NSA1_PICGU Ribosome biogenesis protein NSA1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=NSA1 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 53/269 (19%)

Query: 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV--------KSWN 158
           V LH+F        S    L+     GKA++  +   K + E  C  V        +++ 
Sbjct: 98  VSLHVF--------SEFDALVMGLDSGKAAL--VGFHKNTLEKECQIVDLPGGKPIEAFE 147

Query: 159 VCAS--GTIAF----SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212
            C S  G  A+    + + I + F +  GK V++    L+  E ++ AK    + L +  
Sbjct: 148 ACPSQPGVFAYGGKENDLRIVKMFEV--GKKVKL----LESVEVLFAAKNVKNDHLDLRV 201

Query: 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA-EEPDSF 271
           P W T   F+S  +  K +  T   Q+R+YDT+  R+P   +     PI  +     +S 
Sbjct: 202 PIWITKIRFISSKNSYKLITATRYGQLRIYDTNHGRKPAHDYQVCTNPIITLNFAGSNSD 261

Query: 272 NIYIGNGSG-----DLASVDIRTGK---------------LLGCFI-GKCSGSIRSIARH 310
            + I +         L S+D +  K               LLG +  G  +G+I  ++  
Sbjct: 262 EVIITDNRNMVARHSLVSIDKKAFKTNSATVGDIIKPVPRLLGKYQEGGNTGAIFGVSCF 321

Query: 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
                +A+ GLD YLR +D++TR+++S V
Sbjct: 322 KD-TFVATGGLDRYLRVYDLETREMVSKV 349

Involved in the biogenesis of the 60S ribosomal subunit.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
225427147	421	PREDICTED: WD repeat-containing protein	0.994	0.805	0.747	1e-148
224133888	365	predicted protein [Populus trichocarpa]	0.982	0.917	0.755	1e-145
307136107	422	WD-repeat protein [Cucumis melo subsp. m	0.994	0.803	0.711	1e-140
356560339	550	PREDICTED: WD repeat-containing protein	0.994	0.616	0.697	1e-139
224119618	355	predicted protein [Populus trichocarpa]	0.953	0.915	0.726	1e-137
356520388	445	PREDICTED: WD repeat-containing protein	0.988	0.757	0.693	1e-136
255540311	406	WD-repeat protein, putative [Ricinus com	0.982	0.825	0.695	1e-136
15218889	468	WD40 domain-containing protein [Arabidop	0.994	0.724	0.629	1e-122
297845852	471	transducin family protein [Arabidopsis l	0.994	0.719	0.629	1e-121
242050324	478	hypothetical protein SORBIDRAFT_02g03423	0.982	0.700	0.600	1e-116

>gi|225427147|ref|XP_002277288.1| PREDICTED: WD repeat-containing protein 74 [Vitis vinifera] gi|297742065|emb|CBI33852.3| unnamed protein product [Vitis vinifera]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/340 (74%), Positives = 295/340 (86%), Gaps = 1/340 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLECPGCPP+RALTFD LGL+KV EAR + GG+PKVV+RWG+P SS C+LAASID
Sbjct: 1   MPRTSTLECPGCPPIRALTFDVLGLVKVTEARSKEGGIPKVVDRWGEPDSSKCILAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLA+AR+ GL +ILNPLNG   ++ISN  D+G +P DD IVGLHLFK+Q  + S
Sbjct: 61  DRKSGPLLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLS 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCASGTIAFSKVDISEKFSLF 179
           SRS TLLTCTTKG ASMRS+E+T   A+S+ S + ++WNVCASG I  S+VD +E ++LF
Sbjct: 121 SRSHTLLTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVNVWDL++  KIWTAK PPKNSLG+FTPTWFTSA FLS DDHRKFVAGTN HQV
Sbjct: 181 GGKGVEVNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKAVAE+ D + IYIGNGSGDLASVD+RTGKLLGCF+GK
Sbjct: 241 RLYDISAQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRSIARHP LP+IASCGLDSYLRFWDIKTR++LSAV
Sbjct: 301 CSGSIRSIARHPELPVIASCGLDSYLRFWDIKTRKVLSAV 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133888|ref|XP_002321685.1| predicted protein [Populus trichocarpa] gi|222868681|gb|EEF05812.1| predicted protein [Populus trichocarpa]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/340 (75%), Positives = 283/340 (83%), Gaps = 5/340 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G +P+VVERWGDP SS CVLAASID
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-IPQVVERWGDPDSSKCVLAASID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNG  ++LNPLNG++RV  SN  + G QPEDD I GLHLFKR+R   S
Sbjct: 60  DRKKDPLLAVARKNGEVEVLNPLNGEIRVVFSNVVEDGVQPEDDAIAGLHLFKRER---S 116

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAE-SSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           + S  LLTCTTKG ASMRSI V K  A+ ++ S  K+W VC SG +  SKVD SE +++F
Sbjct: 117 TGSCALLTCTTKGNASMRSIGVDKSMADVANTSVTKTWKVCGSGNVLCSKVDGSENYAVF 176

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDHRKF AGTN HQV
Sbjct: 177 GGKGVEVNLWDLESSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHRKFAAGTNIHQV 236

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 237 RLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 296

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRS+ARHP LP+IASCGLDSYLR WDIKTRQLLSAV
Sbjct: 297 CSGSIRSMARHPELPVIASCGLDSYLRLWDIKTRQLLSAV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136107|gb|ADN33953.1| WD-repeat protein [Cucumis melo subsp. melo]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/340 (71%), Positives = 282/340 (82%), Gaps = 1/340 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTL+CPGCPPLRALTFD LGL+KVIEARG+ G +PKVVERWG+P  S  VLAAS+ 
Sbjct: 1   MPRTTTLDCPGCPPLRALTFDVLGLVKVIEARGKEGEIPKVVERWGEPDFSKSVLAASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNGL ++LNPLNG+L VAIS+  D+   P+D+ IVG+HLF +   E  
Sbjct: 61  DRKFDPLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVE 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLL+CTTKG ASMRSIE +  S+ ++S + VK+W VC SG +  SKVD SE  +LF
Sbjct: 121 SRRCTLLSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+W+L++C KIWTAK P KN+LGIFTPTWFTSA FLS DDHRKF AGTN HQV
Sbjct: 181 GGKGVEVNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQ+RPV+SFDFRETPIK++AE+ D   I++GN SGDLAS DIR GKLLGCF+GK
Sbjct: 241 RLYDISAQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRSIARHP LP+IASCGLDSY+RFWDI TRQLLSAV
Sbjct: 301 CSGSIRSIARHPELPVIASCGLDSYVRFWDINTRQLLSAV 340

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560339|ref|XP_003548450.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/340 (69%), Positives = 278/340 (81%), Gaps = 1/340 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLEC GCPPLRALTFD+LGLIKV+EAR +  G P+VVERWGD  SS CV+A S+ 
Sbjct: 105 MPRTSTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPQVVERWGDLESSKCVMAVSMI 164

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  I++A D   Q E + IVGLHLF +Q  E +
Sbjct: 165 DRESHPLLAVARKNNQIEVLSPVNGDIQATITDANDLDVQSEVNNIVGLHLFAKQNSELA 224

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLLTCTTKG AS+RSIE+   S  SSC  + K WNVC+ G I   KVD +EKF+LF
Sbjct: 225 SRDCTLLTCTTKGNASIRSIELVDSSTVSSCIDSPKIWNVCSGGNILCCKVDGNEKFALF 284

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVE+N+WDL+   KIW +KPPPK++LGIFTPTWFTSA FL  DDHRKFVAGTN HQV
Sbjct: 285 GGKGVEMNIWDLNNFTKIWNSKPPPKDNLGIFTPTWFTSATFLMKDDHRKFVAGTNSHQV 344

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GK
Sbjct: 345 RLYDMSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGK 404

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRSI RHP LP+IASCGLDSYLR WD KTRQLLSAV
Sbjct: 405 CSGSIRSIVRHPELPVIASCGLDSYLRLWDTKTRQLLSAV 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119618|ref|XP_002318118.1| predicted protein [Populus trichocarpa] gi|222858791|gb|EEE96338.1| predicted protein [Populus trichocarpa]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/340 (72%), Positives = 275/340 (80%), Gaps = 15/340 (4%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G  P+VVERWGDP SS CVLAAS D
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-TPQVVERWGDPVSSKCVLAASFD 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DP+          +++NPLNG++ V  SN G+ G QPEDD I GLHLF+R+R   S
Sbjct: 60  DRKKDPV----------EVVNPLNGEIHVVFSNVGEDGVQPEDDAISGLHLFRRER---S 106

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           S S TLLTCT+KG AS+RSI V K++A+S S S  K+W VC SG +  SKVD SE +++F
Sbjct: 107 SGSCTLLTCTSKGNASVRSIGVDKLTADSASISVTKTWKVCGSGNVLCSKVDGSENYAVF 166

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDH KFVAGTN HQV
Sbjct: 167 GGKGVEVNLWDLENSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHHKFVAGTNSHQV 226

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
            LYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 227 HLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 286

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRSIARHP LP+IASCGLDSYLR WDIKTRQLLSAV
Sbjct: 287 CSGSIRSIARHPELPVIASCGLDSYLRLWDIKTRQLLSAV 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520388|ref|XP_003528844.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/339 (69%), Positives = 276/339 (81%), Gaps = 2/339 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLEC GCPPLRALTFD+LGLIKV+EAR +  G P VVERWGDP SS CV+A S+ 
Sbjct: 1   MPRTTTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPLVVERWGDPESSKCVMAVSMI 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  IS+A D   Q E++ IVGLHLF +Q  E +
Sbjct: 61  DRKSHPLLAVARKNNQIEVLSPVNGDIQATISDANDLDVQSEENNIVGLHLFAKQNSELA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180
            R  TLLTCTTKG AS+RSIE+   S  SSC  +K+WNVC+ G I   KVD +EKF+LFG
Sbjct: 121 FRDCTLLTCTTKGNASIRSIELADSSKGSSC--IKTWNVCSGGNILCCKVDGNEKFALFG 178

Query: 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240
           GK VE+N+WDL+   KIW +KPP K++LGIFTPT FTSA FL  DDHRKFVAGTN HQVR
Sbjct: 179 GKCVEMNIWDLNNFTKIWNSKPPTKDNLGIFTPTCFTSATFLMKDDHRKFVAGTNSHQVR 238

Query: 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300
           LYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GKC
Sbjct: 239 LYDVSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGKC 298

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           SGSIRSI +HP LP+IASCGLDSYLR WD KTRQLLSAV
Sbjct: 299 SGSIRSIVKHPELPVIASCGLDSYLRLWDTKTRQLLSAV 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540311|ref|XP_002511220.1| WD-repeat protein, putative [Ricinus communis] gi|223550335|gb|EEF51822.1| WD-repeat protein, putative [Ricinus communis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/341 (69%), Positives = 279/341 (81%), Gaps = 6/341 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTT+E PGCP LRALTFD+LG  KVIE+RG+ G +P+VV+RWGDP  S CVLA SID
Sbjct: 1   MPRTTTVETPGCPQLRALTFDALGFTKVIESRGDRG-IPQVVQRWGDPDPSKCVLAVSID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-QPEDDGIVGLHLFKRQREES 119
           D + DPLLAV RK+G+ +++N LNG ++ +ISN GD+ A +P+DD + GLHLF+RQR   
Sbjct: 60  DHKQDPLLAVGRKDGVIEVMNTLNGQIQASISNVGDADAVKPQDDAVAGLHLFRRQRLSG 119

Query: 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCASGTIAFSKVDISEKFSL 178
           S     LLTCT KG AS+R +E    SA+++ S  +++W VCASG I  SKVD SE ++L
Sbjct: 120 SC---NLLTCTMKGNASIRPLEFNGSSADNASSDGLRNWKVCASGNIFCSKVDGSENYAL 176

Query: 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           FGGK VE+N+WDL+KC +IW AK PPKNSLGIFTPTWFTSA FLS DDHRKF AGT++HQ
Sbjct: 177 FGGKSVELNLWDLEKCSRIWNAKSPPKNSLGIFTPTWFTSATFLSNDDHRKFAAGTSNHQ 236

Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           VRLYDTSA RRPV+SFDFRE PIKAV E+ D + IYIGNGSGDLASVDIRTGKLLGCF+G
Sbjct: 237 VRLYDTSALRRPVISFDFREAPIKAVTEDQDGYTIYIGNGSGDLASVDIRTGKLLGCFLG 296

Query: 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           KCSGSIRSIARHP LP+I SCGLDSYLR WDIKTRQLLSAV
Sbjct: 297 KCSGSIRSIARHPELPLIGSCGLDSYLRLWDIKTRQLLSAV 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218889|ref|NP_174226.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|111074196|gb|ABH04471.1| At1g29320 [Arabidopsis thaliana] gi|332192951|gb|AEE31072.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/340 (62%), Positives = 255/340 (75%), Gaps = 1/340 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRS+ RHP   +IASCGLD YLR +D+KTRQL+SAV
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAV 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845852|ref|XP_002890807.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336649|gb|EFH67066.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/340 (62%), Positives = 255/340 (75%), Gaps = 1/340 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP+RALTFDSLGLIKV EARG+  G P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPIRALTFDSLGLIKVTEARGKERGTPTVVNTWGEMNASRTVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  ++LNP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVLNPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++      +S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDSHGDSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPK++LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKSPPKDNLGIFTPTWFTSATFLSNDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I A+AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITAIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           CSGSIRS+ RHP   +IASCGLD YLR +D+KTR L+SAV
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGLDRYLRVFDVKTRHLISAV 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050324|ref|XP_002462906.1| hypothetical protein SORBIDRAFT_02g034230 [Sorghum bicolor] gi|241926283|gb|EER99427.1| hypothetical protein SORBIDRAFT_02g034230 [Sorghum bicolor]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/343 (60%), Positives = 248/343 (72%), Gaps = 8/343 (2%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTT +E PGCPPLRALT D +GL+KV+EA  +  G  KVVE WGDP +S  ++AAS+ 
Sbjct: 1   MPRTTVVESPGCPPLRALTTDIIGLVKVVEAHTKPAGAAKVVETWGDPDASRAIVAASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG----DSGAQPEDDGIVGLHLFKRQR 116
           D   DP+LAVARKNG+ ++LNPLNGD   A+   G    D GA  E D +  LHLF RQ 
Sbjct: 61  DRAADPVLAVARKNGVVELLNPLNGDALAAVKTVGPSPNDGGA--EGDPLAALHLFTRQ- 117

Query: 117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF 176
             S S   T L CT +GKAS+RSI     ++ S      +W+VC+   + F  VD  E +
Sbjct: 118 -ASDSILGTFLACTEQGKASIRSITKENAASGSDVGPSATWDVCSGANVQFCSVDHGESY 176

Query: 177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND 236
           ++FGGKG+EVN+WD+  C KIW+AK P  NSLGIFT  WFT+  FL  DDHRK VA TND
Sbjct: 177 AMFGGKGIEVNLWDITSCSKIWSAKSPRANSLGIFTRPWFTAGTFLCKDDHRKIVACTND 236

Query: 237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF 296
           HQVRLYDT+ QRRP +S DFRE+PIKAVA +P+  ++YIG G+GDLAS D+RTGKLLGC+
Sbjct: 237 HQVRLYDTALQRRPAISVDFRESPIKAVAADPNGHDVYIGTGTGDLASFDMRTGKLLGCY 296

Query: 297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           IGKCSGSIRSI RHP LP+IASCGLDSYLR WD  TRQLLSAV
Sbjct: 297 IGKCSGSIRSIVRHPELPLIASCGLDSYLRIWDTNTRQLLSAV 339

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2013678	468	AT1G29320 "AT1G29320" [Arabido	0.994	0.724	0.605	3.9e-108
ZFIN|ZDB-GENE-060929-1138	375	wdr74 "WD repeat domain 74" [D	0.545	0.496	0.384	6.8e-30
UNIPROTKB|Q58D06	385	WDR74 "WD repeat-containing pr	0.436	0.387	0.409	4.6e-25
UNIPROTKB|I3LD53	385	WDR74 "Uncharacterized protein	0.436	0.387	0.402	1.2e-24
UNIPROTKB|E2R2B7	383	WDR74 "Uncharacterized protein	0.436	0.389	0.402	2e-24
UNIPROTKB|E9PS41	328	WDR74 "WD repeat-containing pr	0.436	0.454	0.396	6.8e-24
UNIPROTKB|Q6RFH5	385	WDR74 "WD repeat-containing pr	0.436	0.387	0.396	6.8e-24
MGI|MGI:2147427	384	Wdr74 "WD repeat domain 74" [M	0.434	0.385	0.398	1.1e-23
RGD|1582881	366	Wdr74 "WD repeat domain 74" [R	0.434	0.404	0.398	1.1e-23
WB|WBGene00011538	431	T06E6.1 [Caenorhabditis elegan	0.460	0.364	0.366	1.1e-21

TAIR|locus:2013678 AT1G29320 "AT1G29320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
 Identities = 206/340 (60%), Positives = 242/340 (71%)

Query:     1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
             MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct:     1 MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query:    61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKXXXXXXX 120
             D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+       
Sbjct:    61 DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query:   121 XXXXXXXXXXXKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
                        KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct:   121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct:   181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
             RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct:   241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query:   300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
             CSGSIRS+ RHP   +IASCGLD YLR +D+KTRQL+SAV
Sbjct:   301 CSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAV 340

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-060929-1138 wdr74 "WD repeat domain 74" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 75/195 (38%), Positives = 112/195 (57%)

Query:   144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK-IWTAK 201
             KV  E S  TV+  NV     I   + + S++  +  GGK   + VWDL+K +K I+TAK
Sbjct:   110 KVWKEGSTDTVEV-NV--GKDICKMRQNQSQRHHVATGGKENPLKVWDLEKPDKPIFTAK 166

Query:   202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETP 260
                 + L +  P W    +F++  D  K V  T  H+VR+YD S  QRRPV+  DF E P
Sbjct:   167 NVAHDWLEMRVPVWVRDISFIADSD--KIVTCTGHHKVRVYDPSTPQRRPVLEADFGEYP 224

Query:   261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
             + A++       + +GN  G+LA +D+R G + GCF G  +G++R +  HP+LP++ASCG
Sbjct:   225 LTALSLPASQDAVVVGNTHGELAILDLRKGLVRGCFKG-LAGAVRGLQCHPSLPLVASCG 283

Query:   321 LDSYLRFWDIKTRQL 335
             LD +LR   ++ R L
Sbjct:   284 LDRFLRVHSLEDRSL 298

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58D06 WDR74 "WD repeat-containing protein 74" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 63/154 (40%), Positives = 89/154 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             G  +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 299

GO:0005730 "nucleolus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|I3LD53 WDR74 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/154 (40%), Positives = 89/154 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPVFKAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             G  +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRVHRIR 299

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E2R2B7 WDR74 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 62/154 (40%), Positives = 88/154 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   150 GGKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 207

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   208 VRVYDPASPQRRPVLEVTYGEYPLMAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 267

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             G  +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   268 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQ 300

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E9PS41 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 61/154 (39%), Positives = 87/154 (56%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:    92 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 149

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   150 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 209

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             G  +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   210 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQ 242

GO:0001825 "blastocyst formation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q6RFH5 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 61/154 (39%), Positives = 87/154 (56%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:   149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
             G  +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQ 299

GO:0001825 "blastocyst formation" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2147427 Wdr74 "WD repeat domain 74" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 61/153 (39%), Positives = 86/153 (56%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
               +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   268 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 299

GO:0001825 "blastocyst formation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0016070 "RNA metabolic process" evidence=IMP

RGD|1582881 Wdr74 "WD repeat domain 74" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 61/153 (39%), Positives = 86/153 (56%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   151 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQV 208

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   209 RIYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 268

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
               +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   269 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 300

GO:0001825 "blastocyst formation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA;ISO

WB|WBGene00011538 T06E6.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 59/161 (36%), Positives = 87/161 (54%)

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GG    +  W+L+  ++ W+AK  P + LG+  P   T A F  I      +  T  H++
Sbjct:   136 GGMKNLLKTWNLETGQQTWSAKNVPPDMLGLEIPIMITDARF--IPGQNTILEATKLHEM 193

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIG 298
             RLYD  AQRRPV    F E PI   +    +  I   N  G++   D+R+     C F G
Sbjct:   194 RLYDPRAQRRPVKKIPFMENPIMCTSLTYKTNQILAANSIGEMGLFDLRSKVHPMCKFKG 253

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
             + +GSIRSI  HPTLP+ AS G+D +LR  D+++R+L+  +
Sbjct:   254 Q-AGSIRSITAHPTLPLAASVGIDRFLRVHDLQSRKLIHKI 293

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 222 LSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
           ++      FVA  + D  ++L+D    +  V +       + +VA  PD   +   +  G
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
            +   D+ TGK LG   G     + S+A  P   ++AS   D  +R WD++T + +
Sbjct: 200 TIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 19/213 (8%)

Query: 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           S     L + ++ G     +I +  + + SS     S +  +  ++AFS      K    
Sbjct: 250 SPDGSLLASGSSDG-----TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP---DGKLLAS 301

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           G     V +WDL+  + + +                 +S +F S D       G++D  +
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEG-------PVSSLSF-SPDGSLLVSGGSDDGTI 353

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RL+D    +   +      + + +V+  PD   +  G+  G +   D+ TG LL    G 
Sbjct: 354 RLWDLRTGK--PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
            +  + S+   P    +AS   D+ +R WD+KT
Sbjct: 412 -TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + +WDL+  E + T               + +S AF    D R   + + D  ++++D  
Sbjct: 75  IRLWDLETGECVRTLTGHTS---------YVSSVAFS--PDGRILSSSSRDKTIKVWDV- 122

Query: 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASV-DIRTGKLLGCFIGKCSGS 303
              + + +       + +VA        ++ + S D    + D+RTGK +    G  +G 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGE 179

Query: 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
           + S+A  P    + S   D  ++ WD+ T + L
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF 221
             +I         +  L G     + +WDLD  EK+         SL     +  +  A 
Sbjct: 65  EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-------SLEGLHDSSVSKLAL 117

Query: 222 LSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS 279
            S D +   +A ++ D  V+L+D S   + + + +     + ++A  PD        +  
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177

Query: 280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA 338
           G +   D+RTGK L    G  +  + S+A  P    +IAS   D  +R WD+ T +LL +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236

Query: 339 VCS 341
             S
Sbjct: 237 TLS 239

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + +WDL   + + T                  S AF    D  K ++ ++D  ++L+D S
Sbjct: 159 IKLWDLRTGKCVATLTGHTG---------EVNSVAFS--PDGEKLLSSSSDGTIKLWDLS 207

Query: 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305
             +  + +    E  + +VA  PD + +  G+  G +   D+RTG+ +    G  + S+ 
Sbjct: 208 TGK-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVT 265

Query: 306 SIARHPTLPIIASCGLDSYLRFWD 329
           S+A  P    +AS   D  +R WD
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 26/206 (12%)

Query: 145 VSAESSCSTVKSWNVCASGTIAF--------SKVDISEKFSLF---GGKGVEVNVWDLDK 193
            S  S   T+K W++     ++         S +  S    L    G     + +WDL  
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 194 CEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252
            + + +       + +  F+P            D     +G++D  +RL+D  +    + 
Sbjct: 231 GKLLRSTLSGHSDSVVSSFSP------------DGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHP 311
           +     + + +VA  PD   +  G+  G +   D+ TGKLL     K   G + S++  P
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 312 TLPIIA-SCGLDSYLRFWDIKTRQLL 336
              ++      D  +R WD++T + L
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEEPDS 270
             T  AF    D +    G+ D  ++++D                    P++ VA   D 
Sbjct: 11  GVTCVAFS--PDGKLLATGSGDGTIKVWDLE-----TGELLRTLKGHTGPVRDVAASADG 63

Query: 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330
             +  G+    +   D+ TG+ +    G  S  + S+A  P   I++S   D  ++ WD+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSY-VSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 331 KTRQLLSA 338
           +T + L+ 
Sbjct: 123 ETGKCLTT 130

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 22/222 (9%)

Query: 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178
           SS    ++L  ++    +++  +++            S +V        + +  S    L
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV--------TSLAFSPDGKL 169

Query: 179 F---GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235
                     + +WDL   + + T                 +S AF S D      +G++
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTD---------PVSSLAF-SPDGGLLIASGSS 219

Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295
           D  +RL+D S  +    +       + +    PD   +  G+  G +   D+R+   L  
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
            +   S S+ S+A  P   ++AS   D  +R WD++T +LLS
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
KOG4227	609	consensus WD40 repeat protein [General function pr	99.51
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
PRK02889	427	tolB translocation protein TolB; Provisional	99.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.42
KOG1334	559	consensus WD40 repeat protein [General function pr	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.38
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.3
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.3
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.29
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
PRK01029	428	tolB translocation protein TolB; Provisional	99.27
KOG2695	425	consensus WD40 repeat protein [General function pr	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
KOG2315	566	consensus Predicted translation initiation factor	99.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.22
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.21
PRK04792	448	tolB translocation protein TolB; Provisional	99.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.17
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.15
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.14
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.11
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
COG4946	668	Uncharacterized protein related to the periplasmic	99.09
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.08
COG4946	668	Uncharacterized protein related to the periplasmic	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.06
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.02
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.0
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.94
KOG2314	698	consensus Translation initiation factor 3, subunit	98.93
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.9
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.85
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.84
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.83
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.81
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
KOG2314	698	consensus Translation initiation factor 3, subunit	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.71
PRK04043	419	tolB translocation protein TolB; Provisional	98.71
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.69
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.64
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.63
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.61
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.55
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.53
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.47
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.41
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.34
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.28
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.19
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.18
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.17
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.14
KOG3621	726	consensus WD40 repeat-containing protein [General	98.11
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.03
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.03
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.01
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.99
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.98
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.93
KOG3621	726	consensus WD40 repeat-containing protein [General	97.92
KOG2444	238	consensus WD40 repeat protein [General function pr	97.87
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.59
COG3391	381	Uncharacterized conserved protein [Function unknow	97.57
KOG2395	644	consensus Protein involved in vacuole import and d	97.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.48
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.36
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.35
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.33
KOG2395	644	consensus Protein involved in vacuole import and d	97.32
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.32
COG3391	381	Uncharacterized conserved protein [Function unknow	97.3
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.21
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.11
PRK13616	591	lipoprotein LpqB; Provisional	97.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.04
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.0
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.97
KOG2444	238	consensus WD40 repeat protein [General function pr	96.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.68
PHA02713	557	hypothetical protein; Provisional	96.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.46
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.41
PRK13616	591	lipoprotein LpqB; Provisional	96.31
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.25
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.22
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.13
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.96
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.81
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	95.78
PHA02713	557	hypothetical protein; Provisional	95.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.76
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.65
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.53
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.15
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.08
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.01
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.96
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.63
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.62
COG5167	776	VID27 Protein involved in vacuole import and degra	94.54
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.18
PHA03098	534	kelch-like protein; Provisional	94.14
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.09
PHA03098	534	kelch-like protein; Provisional	94.02
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.84
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.56
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.04
PRK13684	334	Ycf48-like protein; Provisional	93.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.83
COG5167	776	VID27 Protein involved in vacuole import and degra	92.73
PHA02790	480	Kelch-like protein; Provisional	92.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.19
COG4590	733	ABC-type uncharacterized transport system, permeas	92.15
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.09
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.73
KOG2247	615	consensus WD40 repeat-containing protein [General	91.66
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.63
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.54
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.42
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.33
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.28
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.2
PRK10115	686	protease 2; Provisional	90.97
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.9
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.87
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.41
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.36
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.19
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.77
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.67
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.24
PRK05560	805	DNA gyrase subunit A; Validated	89.21
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.09
PHA02790	480	Kelch-like protein; Provisional	88.66
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.48
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	88.01
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.93
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.66
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.52
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.4
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.06
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.6
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.47
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.23
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.93
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	85.92
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.82
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.36
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.85
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.23
PRK13684	334	Ycf48-like protein; Provisional	84.21
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.38
KOG2247	615	consensus WD40 repeat-containing protein [General	83.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.92
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	82.76
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.56
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.87
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	81.3
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	81.24
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	80.97
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	80.49
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.16

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.8e-46  Score=289.60  Aligned_cols=286  Identities=17%  Similarity=0.238  Sum_probs=243.9

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-eee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AIS   92 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~   92 (341)
                      .-++++|+.|-++++|++..+     .+..+.++|..-|.+++++||++    .||+|+.||.|++||.++|+++. .+.
T Consensus       127 g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk----~iASG~~dg~I~lwdpktg~~~g~~l~  197 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGK----KIASGSKDGSIRLWDPKTGQQIGRALR  197 (480)
T ss_pred             CceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcc----hhhccccCCeEEEecCCCCCccccccc
Confidence            357888999999999999987     67778899999999999998887    89999999999999999987754 344


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      +        |.+.|++++|-+.+...   ..+.|++++.||.++||++....        .++.. ..|..+|+|+.|-.
T Consensus       198 g--------H~K~It~Lawep~hl~p---~~r~las~skDg~vrIWd~~~~~--------~~~~l-sgHT~~VTCvrwGG  257 (480)
T KOG0271|consen  198 G--------HKKWITALAWEPLHLVP---PCRRLASSSKDGSVRIWDTKLGT--------CVRTL-SGHTASVTCVRWGG  257 (480)
T ss_pred             C--------cccceeEEeecccccCC---CccceecccCCCCEEEEEccCce--------EEEEe-ccCccceEEEEEcC
Confidence            4        67999999997765431   23389999999999999986432        33333 35788999999975


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe---------cCC-----------------
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---------IDD-----------------  226 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~-----------------  226 (341)
                      + .+|++|+.|++|++|+...|...+.+++|.         .+|+.++...         .|.                 
T Consensus       258 ~-gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  258 E-GLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             C-ceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            4 589999999999999999999999888865         5666666510         122                 


Q ss_pred             --------CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405          227 --------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       227 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  298 (341)
                              +..+++|+.|.++.+|+....++|+..+.+|..-|+.+.||||++++|+++.|..|++||-++|+.+.+|++
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence                    245999999999999999887888999999999999999999999999999999999999999999999999


Q ss_pred             cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      | -++|+.++|+.|.++|++||.|.++++||+++.++...+
T Consensus       408 H-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  408 H-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL  447 (480)
T ss_pred             c-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence            9 899999999999999999999999999999998776543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.2e-45  Score=287.36  Aligned_cols=273  Identities=16%  Similarity=0.154  Sum_probs=245.2

Q ss_pred             CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      .....+++|+-+|.+|+|+....     ..+.+|.+|...+.++.|.|..+  +.-+|+++.||++++|++++..++..+
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~~--~~~lat~s~Dgtvklw~~~~e~~l~~l  257 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVDS--DLNLATASADGTVKLWKLSQETPLQDL  257 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCCC--ccceeeeccCCceeeeccCCCcchhhh
Confidence            34567899999999999998876     57778999999999999999852  335999999999999999988899998


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .+|        ...+..++|.+...        .|.+++.|.+-++||+.....         .+..-.|...|.+++|+
T Consensus       258 ~gH--------~~RVs~VafHPsG~--------~L~TasfD~tWRlWD~~tk~E---------lL~QEGHs~~v~~iaf~  312 (459)
T KOG0272|consen  258 EGH--------LARVSRVAFHPSGK--------FLGTASFDSTWRLWDLETKSE---------LLLQEGHSKGVFSIAFQ  312 (459)
T ss_pred             hcc--------hhhheeeeecCCCc--------eeeecccccchhhcccccchh---------hHhhcccccccceeEec
Confidence            884        46777777777776        999999999999999976542         23334577899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  251 (341)
                      +||.++++|+.|..-+|||+++++++..+.+|.         ..|.+++|  +|+|..|++|+.|++++|||++.... +
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r~~-l  380 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAF--SPNGYHLATGSSDNTCKVWDLRMRSE-L  380 (459)
T ss_pred             CCCceeeccCccchhheeecccCcEEEEecccc---------cceeeEeE--CCCceEEeecCCCCcEEEeeeccccc-c
Confidence            999999999999999999999999999999876         55999999  99999999999999999999998654 8


Q ss_pred             EEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          252 MSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      .++..|..-|+.++|+| .|.+|++++.|++++||..+++.+++++.+| ++.|.++..+++++.+++++.|.++++|.
T Consensus       381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence            89999999999999999 7899999999999999999999999999999 99999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.3e-43  Score=275.73  Aligned_cols=252  Identities=16%  Similarity=0.183  Sum_probs=225.8

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecc-ccccccccce
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESSSRSRT  125 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  125 (341)
                      +.+.++..+.||.++.    .|+||+.+|.++||+..+...+.++.+|        ...+.++.|.+.. ..       .
T Consensus       173 gd~rPis~~~fS~ds~----~laT~swsG~~kvW~~~~~~~~~~l~gH--------~~~v~~~~fhP~~~~~-------~  233 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK----HLATGSWSGLVKVWSVPQCNLLQTLRGH--------TSRVGAAVFHPVDSDL-------N  233 (459)
T ss_pred             cCCCcceeeEeecCCC----eEEEeecCCceeEeecCCcceeEEEecc--------ccceeeEEEccCCCcc-------c
Confidence            4567888889998887    8999999999999999999888899884        4778888888874 32       8


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      +++++.||++++|+++...        .+..+. .|...|..++|+|+|++|++++.|.+-++||++++..+....+|. 
T Consensus       234 lat~s~Dgtvklw~~~~e~--------~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs-  303 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQET--------PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS-  303 (459)
T ss_pred             eeeeccCCceeeeccCCCc--------chhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc-
Confidence            9999999999999987543        233232 356789999999999999999999999999999999888777765 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw  285 (341)
                              ..|.+++|  .++|.++++|+.|..-+|||++++.+ +..+.+|..+|.+++|+|+|..||+|+.|++++||
T Consensus       304 --------~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW  372 (459)
T KOG0272|consen  304 --------KGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW  372 (459)
T ss_pred             --------cccceeEe--cCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence                    55999999  89999999999999999999999887 88999999999999999999999999999999999


Q ss_pred             ECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          286 DIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       286 d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |++..+.++.+.+| .+-|+.+.|+| .|.+|+|++.|++++||...+.++++++
T Consensus       373 DLR~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  373 DLRMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL  426 (459)
T ss_pred             eecccccceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence            99999999999998 99999999999 6789999999999999999999998765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-41  Score=262.50  Aligned_cols=257  Identities=11%  Similarity=0.082  Sum_probs=221.8

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      ....+.+|.++|.+++|+++++    .|++|+.|.++|+||+.+..++.+.++|        ...+.|+.|.+..+    
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------~~WVlcvawsPDgk----  170 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGS----RLVTGSGDTTVRLWDLDTETPLFTCKGH--------KNWVLCVAWSPDGK----  170 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCc----eEEecCCCceEEeeccCCCCcceeecCC--------ccEEEEEEECCCcc----
Confidence            3456778999999999998777    8999999999999999999999999884        57788888888777    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCc
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                          .+++|+.||+|.+|+...+..       ..+.+ ..|...|.+++|.|     ..+++++++.||.|+|||+..++
T Consensus       171 ----~iASG~~dg~I~lwdpktg~~-------~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~  238 (480)
T KOG0271|consen  171 ----KIASGSKDGSIRLWDPKTGQQ-------IGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT  238 (480)
T ss_pred             ----hhhccccCCeEEEecCCCCCc-------ccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence                999999999999999765442       11222 24778999999976     56899999999999999999999


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc--------
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE--------  267 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--------  267 (341)
                      .+..+.+|.         ..|+|+.|  . ...++++|+.|++|++|+...+.. .+.+++|...|+.++.+        
T Consensus       239 ~~~~lsgHT---------~~VTCvrw--G-G~gliySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtg  305 (480)
T KOG0271|consen  239 CVRTLSGHT---------ASVTCVRW--G-GEGLIYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTG  305 (480)
T ss_pred             EEEEeccCc---------cceEEEEE--c-CCceEEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhcc
Confidence            999998876         66999999  3 345999999999999999998765 88999999999998877        


Q ss_pred             ---CCCc-------------------------eEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          268 ---PDSF-------------------------NIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       268 ---~~~~-------------------------~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                         |.++                         .|++|+.|.++.+|+... .+++..+.+| ...|+.+.|+||++++|+
T Consensus       306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEEE
Confidence               2233                         499999999999999764 4588889998 899999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeeee
Q 019405          319 CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|.|..|++||.++|+.+.++
T Consensus       385 aSFDkSVkLW~g~tGk~lasf  405 (480)
T KOG0271|consen  385 ASFDKSVKLWDGRTGKFLASF  405 (480)
T ss_pred             eecccceeeeeCCCcchhhhh
Confidence            999999999999999988765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.4e-39  Score=237.39  Aligned_cols=280  Identities=14%  Similarity=0.150  Sum_probs=237.9

Q ss_pred             CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hh
Q 019405           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RV   89 (341)
Q Consensus        12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~   89 (341)
                      .+++-+++++-|-+||.|++..+     .+..+++..+..|+.+...++.+    +||+|+ ...||+||+.++..  +.
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~S~np~Pv~   77 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLNSNNPNPVA   77 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEccCCCCCcee
Confidence            37788999999999999999987     77888888889999998887777    677776 77999999998765  55


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  169 (341)
                      ++.+        +.+.+..+.|-....        .+.++++||+++||+++.-.        .-+.++  +..+|.++.
T Consensus        78 t~e~--------h~kNVtaVgF~~dgr--------WMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~vv  131 (311)
T KOG0315|consen   78 TFEG--------HTKNVTAVGFQCDGR--------WMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNTVV  131 (311)
T ss_pred             EEec--------cCCceEEEEEeecCe--------EEEecCCCceEEEEeccCcc--------cchhcc--CCCCcceEE
Confidence            5555        447787777766666        99999999999999997522        334444  458999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-  248 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-  248 (341)
                      .+|+...|++|..+|.|++||+.+......+.....        ..|.++..  .|+|.+++.+...|+.++|++-... 
T Consensus       132 lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--------~~i~sl~v--~~dgsml~a~nnkG~cyvW~l~~~~~  201 (311)
T KOG0315|consen  132 LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--------TSIQSLTV--MPDGSMLAAANNKGNCYVWRLLNHQT  201 (311)
T ss_pred             ecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--------cceeeEEE--cCCCcEEEEecCCccEEEEEccCCCc
Confidence            999999999999999999999988766655544322        45899999  8999999999999999999987632 


Q ss_pred             ----ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          249 ----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       249 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                          .|+.+++.|+.-+..+.+||++++|++++.|.+++||+.++. +....+.+| ...++..+||.||++|+|++.|+
T Consensus       202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC
Confidence                367888999999999999999999999999999999999988 667778888 89999999999999999999999


Q ss_pred             cEEEEEcCCCceeee
Q 019405          324 YLRFWDIKTRQLLSA  338 (341)
Q Consensus       324 ~v~iwd~~~~~~~~~  338 (341)
                      .+++|++..++.+..
T Consensus       281 ~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  281 TARLWDLSAGKEVRQ  295 (311)
T ss_pred             ceeecccccCceeee
Confidence            999999999987654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=238.03  Aligned_cols=276  Identities=11%  Similarity=0.107  Sum_probs=228.5

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      +-.++.++.|-.+.+|++.......-.++.+|.+|...+.-++.+++++    +.++++.|+++++||+.+++..+.+.+
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----~alS~swD~~lrlWDl~~g~~t~~f~G  103 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----FALSASWDGTLRLWDLATGESTRRFVG  103 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----eEEeccccceEEEEEecCCcEEEEEEe
Confidence            3448889999999999998874333356779999999999999888887    899999999999999999988888888


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      |        ..-+.++++.+.+.        .+++++.|.++.+|++-..-        ...+-+..+...|.|+.|+|+
T Consensus       104 H--------~~dVlsva~s~dn~--------qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen  104 H--------TKDVLSVAFSTDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             c--------CCceEEEEecCCCc--------eeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcCC
Confidence            5        46688888877766        99999999999999975332        233333333568999999997


Q ss_pred             --CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405          174 --EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       174 --~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  251 (341)
                        ..+|++++.|++|++||+++.+....+.+|.         ..++.+++  +|||.+.++|+.||.+.+||++.++. +
T Consensus       160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~v--SpDGslcasGgkdg~~~LwdL~~~k~-l  227 (315)
T KOG0279|consen  160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTV--SPDGSLCASGGKDGEAMLWDLNEGKN-L  227 (315)
T ss_pred             CCCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEE--CCCCCEEecCCCCceEEEEEccCCce-e
Confidence              6899999999999999999988888777754         67999999  99999999999999999999998775 6


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc--------cCceeEEEecCCCCEEEEEeCCC
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      ..+. |...|.+++|+|+...|+.+. +..|+|||+.++..+..++...        .....+++|+++|..|+++-.|+
T Consensus       228 ysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  228 YSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             Eecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence            5554 778999999999987666654 4569999999988876664321        12356789999999999999999


Q ss_pred             cEEEEEcC
Q 019405          324 YLRFWDIK  331 (341)
Q Consensus       324 ~v~iwd~~  331 (341)
                      .|++|.+.
T Consensus       306 ~irv~qv~  313 (315)
T KOG0279|consen  306 VIRVWQVA  313 (315)
T ss_pred             cEEEEEee
Confidence            99999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-38  Score=238.39  Aligned_cols=269  Identities=17%  Similarity=0.222  Sum_probs=229.5

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------   86 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------   86 (341)
                      ..-++++++.||.+.+|+.+..     ..++.+.-...-|...||+|.+.    ++|.|+-|+...||++.+.+      
T Consensus        66 Dsr~ivSaSqDGklIvWDs~Tt-----nK~haipl~s~WVMtCA~sPSg~----~VAcGGLdN~Csiy~ls~~d~~g~~~  136 (343)
T KOG0286|consen   66 DSRRIVSASQDGKLIVWDSFTT-----NKVHAIPLPSSWVMTCAYSPSGN----FVACGGLDNKCSIYPLSTRDAEGNVR  136 (343)
T ss_pred             CcCeEEeeccCCeEEEEEcccc-----cceeEEecCceeEEEEEECCCCC----eEEecCcCceeEEEecccccccccce
Confidence            3467999999999999999986     23334544566677778877666    89999999999999998552      


Q ss_pred             chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      ..+++.+        |.+.+.|..+.+ +.        .+++++.|.+..+||++...        .+..|. .|.+.|.
T Consensus       137 v~r~l~g--------HtgylScC~f~d-D~--------~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~  190 (343)
T KOG0286|consen  137 VSRELAG--------HTGYLSCCRFLD-DN--------HILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVM  190 (343)
T ss_pred             eeeeecC--------ccceeEEEEEcC-CC--------ceEecCCCceEEEEEcccce--------EEEEec-CCcccEE
Confidence            2223333        556677777766 55        89999999999999998665        566666 5789999


Q ss_pred             EEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          167 FSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       167 ~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      +++++| +++.+++|+-|+..++||++.+...+.|.+|.         .-|++++|  .|+|.-+++|+.|++.|+||++
T Consensus       191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~f--fP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRF--FPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             EEecCCCCCCeEEecccccceeeeeccCcceeEeecccc---------cccceEEE--ccCCCeeeecCCCceeEEEeec
Confidence            999999 99999999999999999999999999999976         45999999  7899999999999999999999


Q ss_pred             CCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          246 AQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       246 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      ..++ +..+..  -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+| ++.|.++..+|||.-+++||.|.
T Consensus       260 aD~~-~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  260 ADQE-LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             CCcE-EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhH
Confidence            8665 666653  2457999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             cEEEEE
Q 019405          324 YLRFWD  329 (341)
Q Consensus       324 ~v~iwd  329 (341)
                      .+|||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=233.26  Aligned_cols=259  Identities=13%  Similarity=0.202  Sum_probs=213.1

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCCCCCCCCCCceeeEeeeecc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ  115 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (341)
                      +..++.+|...|+.++......   +.|++++.|.++.+|++..     |..++.+.+|        ...+..+...+..
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~---~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------sH~v~dv~~s~dg   75 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNS---DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------SHFVSDVVLSSDG   75 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCC---ceEEEcccceEEEEEEeccCccccCceeeeeecc--------ceEecceEEccCC
Confidence            4457888999999999887744   3799999999999998753     4455666654        4555556655555


Q ss_pred             ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                      .        +.++++.|+.+++||+..+.        +.+.|. .|...|.+++|++|...+++|+.|.+|++||.....
T Consensus        76 ~--------~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c  138 (315)
T KOG0279|consen   76 N--------FALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC  138 (315)
T ss_pred             c--------eEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence            5        99999999999999997543        445554 478899999999999999999999999999986544


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      . .++....       +.+||.|++|.|+++..+|++++.|++|++||+++.+. ...+.+|+..++.+++||||.++++
T Consensus       139 k-~t~~~~~-------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcas  209 (315)
T KOG0279|consen  139 K-YTIHEDS-------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCAS  209 (315)
T ss_pred             E-EEEecCC-------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEec
Confidence            3 3333332       13899999996555588999999999999999998664 7888999999999999999999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+.||.+.+||++.++.++.+..  ...|.+++|+|+...|+.+ .+..|+|||+.++.++.++
T Consensus       210 Ggkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  210 GGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             CCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhc
Confidence            99999999999999999988874  6899999999998777766 4456999999999988765

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.1e-39  Score=254.56  Aligned_cols=270  Identities=16%  Similarity=0.200  Sum_probs=229.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -|+++|+..|...+|+...-   .++.  .+.+|+.+|.++.++.++.    ++++|+.+|.|++|+.. ...++.+..|
T Consensus       109 RRLltgs~SGEFtLWNg~~f---nFEt--ilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpn-mnnVk~~~ah  178 (464)
T KOG0284|consen  109 RRLLTGSQSGEFTLWNGTSF---NFET--ILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPN-MNNVKIIQAH  178 (464)
T ss_pred             ceeEeecccccEEEecCcee---eHHH--HhhhhcccceeEEEccCCC----EEEEcCCCceEEecccc-hhhhHHhhHh
Confidence            57889999999998887443   1122  4678999999999998877    99999999999999985 4455556653


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...|.++++.+.+.        .+++++.||+++||+.......        ++. ..|+-.|.+++|+|..
T Consensus       179 -------h~eaIRdlafSpnDs--------kF~t~SdDg~ikiWdf~~~kee--------~vL-~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  179 -------HAEAIRDLAFSPNDS--------KFLTCSDDGTIKIWDFRMPKEE--------RVL-RGHGWDVKSVDWHPTK  234 (464)
T ss_pred             -------hhhhhheeccCCCCc--------eeEEecCCCeEEEEeccCCchh--------hee-ccCCCCcceeccCCcc
Confidence                   447788888877655        9999999999999997654421        222 3577789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      .+++++++|+.|++||.++++++..+..|+         ..|..+.|  ++++++|++++.|..++++|+++.+. ++.+
T Consensus       235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~  302 (464)
T KOG0284|consen  235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKE-LFTY  302 (464)
T ss_pred             ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHH-HHHh
Confidence            999999999999999999999999998876         55999999  89999999999999999999997665 8999


Q ss_pred             EecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          255 DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ++|+..++++.|+|- ..+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-
T Consensus       303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999999999999994 4688899999999999998667777776555999999999999999999999999999964

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-38  Score=268.70  Aligned_cols=258  Identities=17%  Similarity=0.234  Sum_probs=222.0

Q ss_pred             eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc-----------------CCC-------
Q 019405           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA-----------------GDS-------   97 (341)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~-------   97 (341)
                      .+++......++|..|+.|.+    +||.|..|..|++|.+...+ ++.++..                 .+.       
T Consensus       371 ~YT~~nt~~~v~ca~fSddss----mlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSS----MLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcc----hhhccccccEEEEEecchhh-hccccchhhhccccccccchhhhhccccCCceeE
Confidence            345555667788888888888    89999999999999987432 1111110                 000       


Q ss_pred             CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (341)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l  177 (341)
                      .-.+|.+++.+..+.+...        .|+++++|+++++|++....        .+-.+. .|..+|+.+.|+|.|-++
T Consensus       446 ~L~GH~GPVyg~sFsPd~r--------fLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYF  508 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRR--------FLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYF  508 (707)
T ss_pred             EeecCCCceeeeeeccccc--------ceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEE
Confidence            0125788999998888877        99999999999999997654        455555 678899999999999999


Q ss_pred             EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec
Q 019405          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR  257 (341)
Q Consensus       178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  257 (341)
                      |+++.|++-++|.....++++.+.+|-         +-|.|+.|  +|+.+++++|+.|.+||+||+.++.. ++.|.+|
T Consensus       509 atas~D~tArLWs~d~~~PlRifaghl---------sDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH  576 (707)
T KOG0263|consen  509 ATASHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGH  576 (707)
T ss_pred             EecCCCceeeeeecccCCchhhhcccc---------cccceEEE--CCcccccccCCCCceEEEEEcCCCcE-EEEecCC
Confidence            999999999999999988888888875         44999999  88999999999999999999999886 9999999


Q ss_pred             CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .++|.+++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|+++.|+.+|..||+++.|.+|++||+..-.
T Consensus       577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999987543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-38  Score=243.71  Aligned_cols=280  Identities=18%  Similarity=0.248  Sum_probs=234.0

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      ++.|.+.|..+....|-.   -+.+.+++.+|..+++.+-|-++..    ++++++.|++|++||..++++...+++|  
T Consensus        79 l~~g~pt~~~~~~~~wip---Rp~l~~~l~g~r~~vt~v~~hp~~~----~v~~as~d~tikv~D~~tg~~e~~LrGH--  149 (406)
T KOG0295|consen   79 LIAGDPTGSKRTPALWIP---RPNLVQKLAGHRSSVTRVIFHPSEA----LVVSASEDATIKVFDTETGELERSLRGH--  149 (406)
T ss_pred             cccCCCCcCccChhhcCC---CCCchhhhhccccceeeeeeccCce----EEEEecCCceEEEEEccchhhhhhhhcc--
Confidence            556666676665555433   1124455667888888888865555    7888999999999999999999999985  


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                            .+.+..+.+-....        .+++++.|-.+.+|+.+..-.       .++. ...|...|.++.|-|.|.+
T Consensus       150 ------t~sv~di~~~a~Gk--------~l~tcSsDl~~~LWd~~~~~~-------c~ks-~~gh~h~vS~V~f~P~gd~  207 (406)
T KOG0295|consen  150 ------TDSVFDISFDASGK--------YLATCSSDLSAKLWDFDTFFR-------CIKS-LIGHEHGVSSVFFLPLGDH  207 (406)
T ss_pred             ------ccceeEEEEecCcc--------EEEecCCccchhheeHHHHHH-------HHHH-hcCcccceeeEEEEecCCe
Confidence                  35566666655555        999999999999999764211       1221 2345667899999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      +++++.|.+|+.|++.++..+..+..|.         .||..++.  ..||.++++++.|.+|++|-+.+.++ ...++.
T Consensus       208 ilS~srD~tik~We~~tg~cv~t~~~h~---------ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~-k~~lR~  275 (406)
T KOG0295|consen  208 ILSCSRDNTIKAWECDTGYCVKTFPGHS---------EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQC-KAELRE  275 (406)
T ss_pred             eeecccccceeEEecccceeEEeccCch---------HhEEEEEe--cCCeeEEEecCCCceEEEEEeccchh-hhhhhc
Confidence            9999999999999999999999999865         78999998  89999999999999999999998654 778889


Q ss_pred             cCCCeEEEEEcCC---------------CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          257 RETPIKAVAEEPD---------------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       257 ~~~~v~~~~~~~~---------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      |+.+|-+++|.|.               ++++.+++.|++|++||+.++.++.++.+| .+.|..++|+|.|++|+++.+
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEec
Confidence            9999999999663               368999999999999999999999999999 999999999999999999999


Q ss_pred             CCcEEEEEcCCCceeeeec
Q 019405          322 DSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       322 dg~v~iwd~~~~~~~~~~~  340 (341)
                      |+++++||+++++|+.+++
T Consensus       355 Dktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  355 DKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             CCcEEEEEeccceeeeccC
Confidence            9999999999999998764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-36  Score=243.48  Aligned_cols=268  Identities=14%  Similarity=0.219  Sum_probs=232.0

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .-.+++|+.+|.+++|+....      ++.++..|.++|..+.++..+.    ||++++.|+++.+||..++.....+..
T Consensus       247 G~~LatG~~~G~~riw~~~G~------l~~tl~~HkgPI~slKWnk~G~----yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGN------LISTLGQHKGPIFSLKWNKKGT----YILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             CCeEEEeecCcEEEEEecCch------hhhhhhccCCceEEEEEcCCCC----EEEeccCCccEEEEeccCceEEEeeee
Confidence            456788999999999998764      5668889999999888877666    999999999999999999988888877


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      |.        .+...+.|.+..         .+++++.|+.++++.+.        .++++..+.- |.++|.++.|+|.
T Consensus       317 ~s--------~~~lDVdW~~~~---------~F~ts~td~~i~V~kv~--------~~~P~~t~~G-H~g~V~alk~n~t  370 (524)
T KOG0273|consen  317 HS--------APALDVDWQSND---------EFATSSTDGCIHVCKVG--------EDRPVKTFIG-HHGEVNALKWNPT  370 (524)
T ss_pred             cc--------CCccceEEecCc---------eEeecCCCceEEEEEec--------CCCcceeeec-ccCceEEEEECCC
Confidence            42        333445554433         79999999999999987        4557777776 8899999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---------CCEEEEEeCCCeEEEEEc
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---------HRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~l~~~~~d~~i~iwd~  244 (341)
                      +.+|++++.|++++||..........+..|.+         .|..+.|  +|.         +..+++++.|++|++||+
T Consensus       371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk---------ei~t~~w--sp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK---------EIYTIKW--SPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             CceEEEecCCCeeEeeecCCCcchhhhhhhcc---------ceeeEee--cCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            99999999999999999988888877877663         4777788  443         357899999999999999


Q ss_pred             CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      ..+. +++.|..|..+|.+++|+|+|+++|+|+.||.|.||+++++++.+.+.+  .+.|..++|+.+|.+|..+-.|+.
T Consensus       440 ~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  440 ESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGS  516 (524)
T ss_pred             cCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCC
Confidence            9977 4999999999999999999999999999999999999999999999987  577999999999999999999999


Q ss_pred             EEEEEcC
Q 019405          325 LRFWDIK  331 (341)
Q Consensus       325 v~iwd~~  331 (341)
                      +++-|++
T Consensus       517 vcvldlr  523 (524)
T KOG0273|consen  517 VCVLDLR  523 (524)
T ss_pred             ceEEEec
Confidence            9999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-37  Score=238.33  Aligned_cols=269  Identities=12%  Similarity=0.163  Sum_probs=231.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~   95 (341)
                      .+++++|++|++|+..+.     ++...+++|..++..++|...+.    +|++++.|-.+++||.++ .++++...+  
T Consensus       123 v~~as~d~tikv~D~~tg-----~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~g--  191 (406)
T KOG0295|consen  123 VVSASEDATIKVFDTETG-----ELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLIG--  191 (406)
T ss_pred             EEEecCCceEEEEEccch-----hhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhcC--
Confidence            356678999999999987     56678899999988888877665    899999999999999976 445555554  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            ++..+.++.+++.+.        .+++++.|.++++|++..+-        .++.+.. +...|..++.+.||.
T Consensus       192 ------h~h~vS~V~f~P~gd--------~ilS~srD~tik~We~~tg~--------cv~t~~~-h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  192 ------HEHGVSSVFFLPLGD--------HILSCSRDNTIKAWECDTGY--------CVKTFPG-HSEWVRMVRVNQDGT  248 (406)
T ss_pred             ------cccceeeEEEEecCC--------eeeecccccceeEEecccce--------eEEeccC-chHhEEEEEecCCee
Confidence                  456677788888776        99999999999999987554        5666654 566899999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec-------------CCCCEEEEEeCCCeEEEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-------------DDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~l~~~~~d~~i~iw  242 (341)
                      ++++++.|.+|++|-+.+++....+..|.         .+|.+++|.|-             ..+.++.+++.|++|++|
T Consensus       249 i~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  249 IIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             EEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence            99999999999999999998777777754         55888888541             123589999999999999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      |+.++.+ +.++.+|...|..++|+|.|++|+++..|+++++||++++++...+..| ..-++++.|+.+..++++|+-|
T Consensus       320 dv~tg~c-L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  320 DVSTGMC-LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             eccCCeE-EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEecccc
Confidence            9999876 9999999999999999999999999999999999999999999999988 9999999999999999999999


Q ss_pred             CcEEEEEc
Q 019405          323 SYLRFWDI  330 (341)
Q Consensus       323 g~v~iwd~  330 (341)
                      ..+++|.-
T Consensus       398 qt~KvwEc  405 (406)
T KOG0295|consen  398 QTVKVWEC  405 (406)
T ss_pred             ceeeeeec
Confidence            99999964

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=250.87  Aligned_cols=277  Identities=18%  Similarity=0.260  Sum_probs=236.5

Q ss_pred             eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCC
Q 019405           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (341)
Q Consensus        18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   97 (341)
                      +.+++-|++-||+...+     ..+.+.++|-..++++++|+|+.    ++|+|+.||+|+|||...+-|..++..|   
T Consensus       324 ~g~~klgQLlVweWqsE-----sYVlKQQgH~~~i~~l~YSpDgq----~iaTG~eDgKVKvWn~~SgfC~vTFteH---  391 (893)
T KOG0291|consen  324 FGCSKLGQLLVWEWQSE-----SYVLKQQGHSDRITSLAYSPDGQ----LIATGAEDGKVKVWNTQSGFCFVTFTEH---  391 (893)
T ss_pred             EcCCccceEEEEEeecc-----ceeeeccccccceeeEEECCCCc----EEEeccCCCcEEEEeccCceEEEEeccC---
Confidence            34456689999999887     56677888999999999988777    9999999999999999999999988874   


Q ss_pred             CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (341)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l  177 (341)
                           ...++.+.+.....        .+++.+-||+++.||+....        ..+.|....+....|++.+|.|.++
T Consensus       392 -----ts~Vt~v~f~~~g~--------~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  392 -----TSGVTAVQFTARGN--------VLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             -----CCceEEEEEEecCC--------EEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEE
Confidence                 46788888877766        99999999999999997443        5666666666677899999999999


Q ss_pred             EEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          178 LFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       178 ~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      ++|+.|. .|++|++++|+.+-.+.+|.         ++|.+++|  +|.++.|++++.|.+||+||+-.....+..+. 
T Consensus       451 ~AG~~d~F~IfvWS~qTGqllDiLsGHE---------gPVs~l~f--~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-  518 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTGQLLDILSGHE---------GPVSGLSF--SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-  518 (893)
T ss_pred             EeeccceEEEEEEEeecCeeeehhcCCC---------CcceeeEE--ccccCeEEeccccceEEEEEeeccCceeeeEe-
Confidence            9999885 59999999999999998865         77999999  89999999999999999999987655456665 


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------------------ccCceeEEEecCCCCEEE
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------CSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l~  317 (341)
                      +...+..++|+|+|+.|+++..||.|.+||...+..+..+.+.                   ....++.+++++||..++
T Consensus       519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il  598 (893)
T KOG0291|consen  519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL  598 (893)
T ss_pred             eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE
Confidence            5567999999999999999999999999999876555443321                   135799999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeee
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|+....|++||+.++-.++++
T Consensus       599 AgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  599 AGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             ecCCcccEEEEECchhheeeeE
Confidence            9999999999999999888765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=222.14  Aligned_cols=260  Identities=15%  Similarity=0.160  Sum_probs=219.8

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..+++|...|+++-|+.|..    +|++++.||.+.|||.-+...+..+...        ...+...++.|...      
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVMtCA~sPSg~------  110 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVMTCAYSPSGN------  110 (343)
T ss_pred             EEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecC--------ceeEEEEEECCCCC------
Confidence            36889999999999888877    8999999999999999887766666552        24455555555544      


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEE--EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                        .++.|+-|+.-.||++.+..     .++.+++-  -..|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..|
T Consensus       111 --~VAcGGLdN~Csiy~ls~~d-----~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  111 --FVACGGLDNKCSIYPLSTRD-----AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             --eEEecCcCceeEEEeccccc-----ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEe
Confidence              88999999999999997543     22233322  335678899999976 667899999999999999999999999


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .+|.         +-|.++.+  +| +++.+++|+-|+..++||++.+.. ++.|.+|+..|++++|.|+|.-+++|+.|
T Consensus       183 ~GH~---------gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  183 HGHT---------GDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             cCCc---------ccEEEEec--CCCCCCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCCeeeecCCC
Confidence            9876         44999999  66 999999999999999999999865 99999999999999999999999999999


Q ss_pred             CCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ++.++||++..+.+..+... ...+|++++|+..|++|++|..|.++.+||.-.++.+..|+
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence            99999999999888877632 14589999999999999999999999999998888877765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.3e-35  Score=237.30  Aligned_cols=298  Identities=17%  Similarity=0.178  Sum_probs=235.2

Q ss_pred             CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      .-|+|++++++|+.+.+++-..-     +...++++|..-|.++.|+||++    ++++++.||+|.|||-.+|+.+..+
T Consensus       158 sRPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRysPDG~----~Fat~gsDgki~iyDGktge~vg~l  228 (603)
T KOG0318|consen  158 SRPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRYSPDGS----RFATAGSDGKIYIYDGKTGEKVGEL  228 (603)
T ss_pred             CCceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEECCCCC----eEEEecCCccEEEEcCCCccEEEEe
Confidence            34799999999999998875554     66668889999999999998877    8999999999999999999999888


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc------------------------c
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------A  147 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~------------------------~  147 (341)
                      ..     ..+|.+.|..+.|.+...        .+++++.|.+++||++...+..                        +
T Consensus       229 ~~-----~~aHkGsIfalsWsPDs~--------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt  295 (603)
T KOG0318|consen  229 ED-----SDAHKGSIFALSWSPDST--------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT  295 (603)
T ss_pred             cC-----CCCccccEEEEEECCCCc--------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence            75     125779999999988887        9999999999999999876542                        1


Q ss_pred             ccCCceEEEEEee----------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-----------cCCCC--
Q 019405          148 ESSCSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-----------AKPPP--  204 (341)
Q Consensus       148 ~~~~~~v~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----------~~~~~--  204 (341)
                      -+..|.+..++..          |...|+++..++++++|++|+.||.|.-|+..++..-+.           +....  
T Consensus       296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence            1222333333322          346799999999999999999999999999976532110           00000  


Q ss_pred             ----------------------CC--------c-----------------------------cCccCCeeeeEEEEEecC
Q 019405          205 ----------------------KN--------S-----------------------------LGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       205 ----------------------~~--------~-----------------------------~~~~~~~~v~~~~~~~~~  225 (341)
                                            ..        +                             ..+.-.-...++++  +|
T Consensus       376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv--~~  453 (603)
T KOG0318|consen  376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV--SP  453 (603)
T ss_pred             cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE--cC
Confidence                                  00        0                             00000112456666  78


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCce
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i  304 (341)
                      +++.+++|+.|+.|++|.+.... .....+..|..+|+++++||++.+||+|...+.+.+||+.+.+.....-..|.+.|
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI  533 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI  533 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence            99999999999999999998755 33445667999999999999999999999999999999998877544444349999


Q ss_pred             eEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          305 RSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .+++|+|+..++||||.|..|.||+++..
T Consensus       534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             EEEEeCCCceEEEeccccceEEEEEccCh
Confidence            99999999999999999999999999753

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-36  Score=250.93  Aligned_cols=306  Identities=15%  Similarity=0.143  Sum_probs=219.3

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~   93 (341)
                      .-+.+|+.||.++||++...     .+.+.|++|.+.|..+.|.++...  .+|++|..|+++++||+.+.. ++..+..
T Consensus       118 ~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~~~tcl~~~~~  190 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLNDKRTCLHTMIL  190 (775)
T ss_pred             ceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEcccCchHHHHHHh
Confidence            44678899999999999987     788899999999999999988874  478999999999999998544 3566555


Q ss_pred             cCCCCCCCCCCceeeEeeeeccc--------------------------------------cccccccceeEEEccccee
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQR--------------------------------------EESSSRSRTLLTCTTKGKA  135 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~l~~~~~~g~~  135 (341)
                      |.        ..++++.+.+...                                      ++.+.....+++++.+|.+
T Consensus       191 H~--------S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~  262 (775)
T KOG0319|consen  191 HK--------SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV  262 (775)
T ss_pred             hh--------hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence            43        2222222222211                                      0001112256666666777


Q ss_pred             EEEEeeecccc------------------------cccCCc---------------------------------------
Q 019405          136 SMRSIEVTKVS------------------------AESSCS---------------------------------------  152 (341)
Q Consensus       136 ~i~~~~~~~~~------------------------~~~~~~---------------------------------------  152 (341)
                      ++|+.+.....                        ....++                                       
T Consensus       263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA  342 (775)
T KOG0319|consen  263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA  342 (775)
T ss_pred             EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence            77765433210                        000111                                       


Q ss_pred             ----eEEEEEee---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc------------------------
Q 019405          153 ----TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE------------------------  195 (341)
Q Consensus       153 ----~v~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~------------------------  195 (341)
                          .+++++..         |...|.+++...+|.+|++|+.|+++++|.++++.                        
T Consensus       343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~  422 (775)
T KOG0319|consen  343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL  422 (775)
T ss_pred             eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence                11111111         01234455544455677777777777777653211                        


Q ss_pred             --------------eeeecCCCC---------CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          196 --------------KIWTAKPPP---------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       196 --------------~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                                    .++.+....         .......|...|+++++  +|+.++++||+.|.+.+||++.... ...
T Consensus       423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~~-l~~  499 (775)
T KOG0319|consen  423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQLR-LLG  499 (775)
T ss_pred             CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCce-EEE
Confidence                          011111100         00123346678999999  8999999999999999999999654 588


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .+.+|...|.++.|+|..+.+++++.|++|+||.+.++.++.+|.+| ...|..+.|-.++.+|++++.||.+++|++++
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             Cceeeee
Q 019405          333 RQLLSAV  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      +.|+.++
T Consensus       579 ~eC~~tl  585 (775)
T KOG0319|consen  579 NECEMTL  585 (775)
T ss_pred             hhhhhhh
Confidence            9998765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.4e-38  Score=242.48  Aligned_cols=268  Identities=14%  Similarity=0.212  Sum_probs=222.8

Q ss_pred             CCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        11 ~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      +-..-.+++|..|.+|++|+..+-     ..+..+.+|.++|.|+.|..      ..+++|+.|.+|+|||+++++++++
T Consensus       204 QYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  204 QYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             EecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCCchhhH
Confidence            334456788999999999998887     56677889999999998763      2699999999999999999999999


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      +-.|        .+.+..+.+.+.          .+++++.|+++.+|++......      +++-.-..|...|..+.|
T Consensus       273 lihH--------ceaVLhlrf~ng----------~mvtcSkDrsiaVWdm~sps~i------t~rrVLvGHrAaVNvVdf  328 (499)
T KOG0281|consen  273 LIHH--------CEAVLHLRFSNG----------YMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF  328 (499)
T ss_pred             Hhhh--------cceeEEEEEeCC----------EEEEecCCceeEEEeccCchHH------HHHHHHhhhhhheeeecc
Confidence            8874        366777766432          9999999999999998654322      222222356678888888


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      +  .+++++++.|.+|++|++.+++.++.+.+|.         ..|-|+.+    .++++++|+.|.+|++||+..+.+ 
T Consensus       329 d--~kyIVsASgDRTikvW~~st~efvRtl~gHk---------RGIAClQY----r~rlvVSGSSDntIRlwdi~~G~c-  392 (499)
T KOG0281|consen  329 D--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGAC-  392 (499)
T ss_pred             c--cceEEEecCCceEEEEeccceeeehhhhccc---------ccceehhc----cCeEEEecCCCceEEEEeccccHH-
Confidence            5  5699999999999999999999999999876         44888877    789999999999999999999886 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      ++.+.+|+.-|.++.|  +.+.+++|.+||+|++||+..+.         ++..+..| .+.|..+.|  |...+++++.
T Consensus       393 LRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssH  467 (499)
T KOG0281|consen  393 LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSH  467 (499)
T ss_pred             HHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccC
Confidence            8999999999999999  45689999999999999998753         34445555 889999999  5678999999


Q ss_pred             CCcEEEEEcCCCc
Q 019405          322 DSYLRFWDIKTRQ  334 (341)
Q Consensus       322 dg~v~iwd~~~~~  334 (341)
                      |.+|.|||..++-
T Consensus       468 ddtILiWdFl~~~  480 (499)
T KOG0281|consen  468 DDTILIWDFLNGP  480 (499)
T ss_pred             CCeEEEEEcCCCC
Confidence            9999999987764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.7e-35  Score=235.00  Aligned_cols=277  Identities=16%  Similarity=0.167  Sum_probs=225.0

Q ss_pred             eecCCCCeEEEEEecC-ccCcccee----eeccC----CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405           19 TFDSLGLIKVIEARGE-HGGVPKVV----ERWGD----PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (341)
Q Consensus        19 ~~~~~g~i~~~~~~~~-~~g~~~~~----~~~~~----~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~   89 (341)
                      +++.+-.-++|++... -.+...++    ..+++    ....|++++|+.++.    +||+|..||.++||+. +|..+.
T Consensus       196 sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~----~LatG~~~G~~riw~~-~G~l~~  270 (524)
T KOG0273|consen  196 SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT----LLATGSEDGEARIWNK-DGNLIS  270 (524)
T ss_pred             ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC----eEEEeecCcEEEEEec-Cchhhh
Confidence            4555556688988862 11111111    11222    335688888887777    8999999999999998 577777


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  169 (341)
                      ++..        |.++|.++.|.....        ++++++.|+++.+||...+         +++.-...+..+-..+.
T Consensus       271 tl~~--------HkgPI~slKWnk~G~--------yilS~~vD~ttilwd~~~g---------~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  271 TLGQ--------HKGPIFSLKWNKKGT--------YILSGGVDGTTILWDAHTG---------TVKQQFEFHSAPALDVD  325 (524)
T ss_pred             hhhc--------cCCceEEEEEcCCCC--------EEEeccCCccEEEEeccCc---------eEEEeeeeccCCccceE
Confidence            7776        558899999987777        9999999999999997432         33332223444445566


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  249 (341)
                      |- +...+++++.|+.|+++.+....+..++.+|.         +.|.++.|  +|.+.+|++++.|++++||.+.....
T Consensus       326 W~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  326 WQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             Ee-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEE--CCCCceEEEecCCCeeEeeecCCCcc
Confidence            64 34578999999999999999888888888865         66999999  89999999999999999999887654


Q ss_pred             eeEEEEecCCCeEEEEEcCCC---------ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          250 PVMSFDFRETPIKAVAEEPDS---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~~~---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                       ...+..|...|..+.|+|.|         ..+++++.|++|++||+..+.+++.|..| ..+|++++|+|+|+++|+|+
T Consensus       394 -~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsGs  471 (524)
T KOG0273|consen  394 -VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASGS  471 (524)
T ss_pred             -hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEecC
Confidence             88899999999999999964         47899999999999999999999999998 99999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeee
Q 019405          321 LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       321 ~dg~v~iwd~~~~~~~~~~  339 (341)
                      .||.|.+|++++++.++.+
T Consensus       472 ~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  472 LDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             CCCeeEeccccchheeEee
Confidence            9999999999999988765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-36  Score=232.96  Aligned_cols=257  Identities=14%  Similarity=0.256  Sum_probs=223.3

Q ss_pred             cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      |++...+.+|.+-|.++++-|...    +|++|+.|++|+|||+.+|+...++.+|        -..+..+++.+.+.  
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~----wf~tgs~DrtikIwDlatg~LkltltGh--------i~~vr~vavS~rHp--  206 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNE----WFATGSADRTIKIWDLATGQLKLTLTGH--------IETVRGVAVSKRHP--  206 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCce----eEEecCCCceeEEEEcccCeEEEeecch--------hheeeeeeecccCc--
Confidence            344445667889999999877655    9999999999999999999999998874        35566777777666  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                            ++++++.|+.++.||++..+        .|+-|. .|-..|.|++.+|.-..|++|+.|.++++||+++...+.
T Consensus       207 ------YlFs~gedk~VKCwDLe~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  207 ------YLFSAGEDKQVKCWDLEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             ------eEEEecCCCeeEEEechhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence                  99999999999999998655        455554 356789999999999999999999999999999999999


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      .+.+|.         ..|.++.+  .|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|....+|+++.
T Consensus       272 ~l~GH~---------~~V~~V~~--~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  272 VLSGHT---------NPVASVMC--QPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             EecCCC---------CcceeEEe--ecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCC
Confidence            999876         56888888  67788999999999999999999876 8888889999999999999988888887


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      | .|+-|++..|..+..+.+| .+-|++++.+.|+ ++++|++.|.+.+||.++|...+.+
T Consensus       340 d-nik~w~~p~g~f~~nlsgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  340 D-NIKQWKLPEGEFLQNLSGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             c-cceeccCCccchhhccccc-cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence            6 6999999999999999998 8999999998776 7889999999999999998776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=224.39  Aligned_cols=278  Identities=16%  Similarity=0.130  Sum_probs=225.2

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++|+.|..--+|++.+.     .....+.+|..+|+++.||.++.    +||||+.+|.|+||...++.....+..  
T Consensus        78 l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~Fshdgt----lLATGdmsG~v~v~~~stg~~~~~~~~--  146 (399)
T KOG0296|consen   78 LVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSHDGT----LLATGDMSGKVLVFKVSTGGEQWKLDQ--  146 (399)
T ss_pred             eEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEccCce----EEEecCCCccEEEEEcccCceEEEeec--
Confidence            3568889999999999987     45667889999999999999888    999999999999999999887777652  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            ....+.-+.|.+...        .|++|+.||.+.+|.+...        +..+++.- |..++.+=.|.|+|+
T Consensus       147 ------e~~dieWl~WHp~a~--------illAG~~DGsvWmw~ip~~--------~~~kv~~G-h~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  147 ------EVEDIEWLKWHPRAH--------ILLAGSTDGSVWMWQIPSQ--------ALCKVMSG-HNSPCTCGEFIPDGK  203 (399)
T ss_pred             ------ccCceEEEEeccccc--------EEEeecCCCcEEEEECCCc--------ceeeEecC-CCCCcccccccCCCc
Confidence                  125566666666544        9999999999999998643        35666664 778899999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCc------------------------------------------cCccCC
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS------------------------------------------LGIFTP  213 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~  213 (341)
                      .++++..||+|++||+.+++++..+.......                                          +...+.
T Consensus       204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e  283 (399)
T KOG0296|consen  204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE  283 (399)
T ss_pred             eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence            99999999999999999998877665211000                                          000111


Q ss_pred             eeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          214 TWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       214 ~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                      ..+.++.+.| +..-.+.|+|+.||+|.|||+....  ++..-.|..+|..+.|-+ ..+|++++.+|.|+.||.++|++
T Consensus       284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL  360 (399)
T ss_pred             hhhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence            2233333321 2334678899999999999999744  555566999999999998 67999999999999999999999


Q ss_pred             EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +..+.+| ...|.+++++|+.++++|+|.|+..+||++.
T Consensus       361 ~~~y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  361 KFTYTGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999 9999999999999999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.4e-34  Score=211.34  Aligned_cols=255  Identities=11%  Similarity=0.100  Sum_probs=203.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      .++....-.||++++...   .+.++.+|.+|...|+++.|-.+++    ++++|+.||+++|||++...+.+.++..  
T Consensus        54 ~LAaa~~qhvRlyD~~S~---np~Pv~t~e~h~kNVtaVgF~~dgr----WMyTgseDgt~kIWdlR~~~~qR~~~~~--  124 (311)
T KOG0315|consen   54 DLAAAGNQHVRLYDLNSN---NPNPVATFEGHTKNVTAVGFQCDGR----WMYTGSEDGTVKIWDLRSLSCQRNYQHN--  124 (311)
T ss_pred             hhhhccCCeeEEEEccCC---CCCceeEEeccCCceEEEEEeecCe----EEEecCCCceEEEEeccCcccchhccCC--
Confidence            344444556789998876   2236779999999999999988877    9999999999999999987766666642  


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                             .++.++...+...        .|+++..+|.|++||+....        ..+..-.+....|.++.+.|||.+
T Consensus       125 -------spVn~vvlhpnQt--------eLis~dqsg~irvWDl~~~~--------c~~~liPe~~~~i~sl~v~~dgsm  181 (311)
T KOG0315|consen  125 -------SPVNTVVLHPNQT--------ELISGDQSGNIRVWDLGENS--------CTHELIPEDDTSIQSLTVMPDGSM  181 (311)
T ss_pred             -------CCcceEEecCCcc--------eEEeecCCCcEEEEEccCCc--------cccccCCCCCcceeeEEEcCCCcE
Confidence                   6788888888777        99999999999999997543        112222233467999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      ++.+...|..++|++-+.+....+....+  + ..|...+..+.+  +|++++|++++.|.+++||+..+.-+....+++
T Consensus       182 l~a~nnkG~cyvW~l~~~~~~s~l~P~~k--~-~ah~~~il~C~l--SPd~k~lat~ssdktv~iwn~~~~~kle~~l~g  256 (311)
T KOG0315|consen  182 LAAANNKGNCYVWRLLNHQTASELEPVHK--F-QAHNGHILRCLL--SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG  256 (311)
T ss_pred             EEEecCCccEEEEEccCCCccccceEhhh--e-ecccceEEEEEE--CCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence            99999999999999976543333322211  1 114567888899  999999999999999999999987344677889


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      |+..++.++||.+|++|++|+.|+.+++||+..++.+..+.+|+. ...+++.
T Consensus       257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~l  308 (311)
T KOG0315|consen  257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVAL  308 (311)
T ss_pred             CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEe
Confidence            999999999999999999999999999999999999999999954 4445544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-34  Score=241.66  Aligned_cols=275  Identities=11%  Similarity=0.113  Sum_probs=227.0

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hhee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAI   91 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~   91 (341)
                      .+..++..+.+|+++....      -..-+.+|...+.++.....+    .+|++|+.|.++++|.++++..    +...
T Consensus       338 ~laVATNs~~lr~y~~~~~------~c~ii~GH~e~vlSL~~~~~g----~llat~sKD~svilWr~~~~~~~~~~~a~~  407 (775)
T KOG0319|consen  338 HLAVATNSPELRLYTLPTS------YCQIIPGHTEAVLSLDVWSSG----DLLATGSKDKSVILWRLNNNCSKSLCVAQA  407 (775)
T ss_pred             eEEEEeCCCceEEEecCCC------ceEEEeCchhheeeeeecccC----cEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence            3455667788899866654      122578899999888744333    4899999999999998854432    2222


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE----EEeecCCceEE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS----WNVCASGTIAF  167 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~----~~~~~~~~i~~  167 (341)
                      .        .|...+.+++.....       ...|++++.|.++++|++...+...    .++.+    -...|...|.+
T Consensus       408 ~--------gH~~svgava~~~~~-------asffvsvS~D~tlK~W~l~~s~~~~----~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  408 N--------GHTNSVGAVAGSKLG-------ASFFVSVSQDCTLKLWDLPKSKETA----FPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             c--------ccccccceeeecccC-------ccEEEEecCCceEEEecCCCccccc----ccceehhhHHHHhhcccccc
Confidence            3        355667777663322       2399999999999999997733211    12222    23457889999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ++++|+.+++|+||.|.+.++|++++.+....+.+|.         ..|.++.|  ++....+++++.|++|+||.+.+.
T Consensus       469 Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~---------RGvw~V~F--s~~dq~laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  469 VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT---------RGVWCVSF--SKNDQLLATCSGDKTVKIWSISTF  537 (775)
T ss_pred             eEecCCCceEEecccccceeeecccCceEEEEeeCCc---------cceEEEEe--ccccceeEeccCCceEEEEEeccc
Confidence            9999999999999999999999999999999999876         55999999  889999999999999999999998


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      .+ ++++.+|...|..+.|-.++..|++++.||.|++|++.+++++.++..| ++.|++++-+|....++||+.||.|.+
T Consensus       538 SC-lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~  615 (775)
T KOG0319|consen  538 SC-LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH-NDRVWALSVSPLLDMFVTGGGDGRIIF  615 (775)
T ss_pred             ee-eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc-cceeEEEeecCccceeEecCCCeEEEE
Confidence            76 9999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             EEcCC
Q 019405          328 WDIKT  332 (341)
Q Consensus       328 wd~~~  332 (341)
                      |.=.|
T Consensus       616 wkD~T  620 (775)
T KOG0319|consen  616 WKDVT  620 (775)
T ss_pred             eecCc
Confidence            96443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=238.76  Aligned_cols=255  Identities=17%  Similarity=0.236  Sum_probs=220.1

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ++..+...|.++.    .+|..++++++-.+|.|.|||.++...++.+..        .+.++....+....+       
T Consensus         8 k~~~rSdRVKsVd----~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------~~~PvRa~kfiaRkn-------   68 (794)
T KOG0276|consen    8 KFQSRSDRVKSVD----FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------SEVPVRAAKFIARKN-------   68 (794)
T ss_pred             HhhccCCceeeee----cCCCCceEEEeeecCeeEEEecccceeeeeeee--------cccchhhheeeeccc-------
Confidence            3444566666554    566677999999999999999999988888876        346677777777666       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~  202 (341)
                       .+++|+.|..++|++.+...        .++.|.+ |..-|.+++.+|...++++++.|-+|++||.+.. .+.+.+.+
T Consensus        69 -Wiv~GsDD~~IrVfnynt~e--------kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG  138 (794)
T KOG0276|consen   69 -WIVTGSDDMQIRVFNYNTGE--------KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG  138 (794)
T ss_pred             -eEEEecCCceEEEEecccce--------eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence             99999999999999988655        7888886 7889999999999999999999999999999864 55666777


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC--ceEEEEeCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSG  280 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg  280 (341)
                      |.         ..|.+++|. +.|.+.+++++-|++|++|.+.... +..++.+|+..|+++.+-+.|  .+|++|+.|.
T Consensus       139 H~---------HyVMqv~fn-PkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  139 HE---------HYVMQVAFN-PKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             cc---------eEEEEEEec-CCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence            54         789999996 4577899999999999999998754 689999999999999998754  7999999999


Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|+|||.++..+++++.+| ...|..+.|+|.-+++++||.||++|||+..|-+...++
T Consensus       208 tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  208 TIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             eEEEeecchHHHHHHhhcc-cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            9999999999999999999 999999999999999999999999999999887665443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=234.63  Aligned_cols=247  Identities=15%  Similarity=0.179  Sum_probs=211.9

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      .+|..+.+.    |+|..|++|+..|.+.+|+...-.....++.        |+.+|.++.|.....        .++++
T Consensus        97 c~V~~v~Wt----PeGRRLltgs~SGEFtLWNg~~fnFEtilQa--------HDs~Vr~m~ws~~g~--------wmiSg  156 (464)
T KOG0284|consen   97 CPVNVVRWT----PEGRRLLTGSQSGEFTLWNGTSFNFETILQA--------HDSPVRTMKWSHNGT--------WMISG  156 (464)
T ss_pred             cceeeEEEc----CCCceeEeecccccEEEecCceeeHHHHhhh--------hcccceeEEEccCCC--------EEEEc
Confidence            345555555    4455899999999999999855444333333        678888999888777        99999


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  209 (341)
                      ..+|.|++|+.+..         .++.....+...|.+++|+|+...+++++.||+|+|||....++...+.+|.     
T Consensus       157 D~gG~iKyWqpnmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-----  222 (464)
T KOG0284|consen  157 DKGGMIKYWQPNMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-----  222 (464)
T ss_pred             CCCceEEecccchh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-----
Confidence            99999999997544         4566677777899999999999999999999999999999888877777765     


Q ss_pred             ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                          --|.++.|  +|...+|++++.|..|++||.+++++ +.++..|+..|..+.|+|++.+|++++.|..++++|+++
T Consensus       223 ----wdVksvdW--HP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  223 ----WDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             ----CCcceecc--CCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence                34899999  78899999999999999999999886 899999999999999999999999999999999999999


Q ss_pred             CeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCceeee
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .+.++++++| ...|+++.|+|-. .+|.+|+.||.|..|.+...+++..
T Consensus       296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~  344 (464)
T KOG0284|consen  296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE  344 (464)
T ss_pred             hHHHHHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence            9999999998 9999999999954 5889999999999999885555443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.9e-35  Score=235.61  Aligned_cols=270  Identities=15%  Similarity=0.188  Sum_probs=224.2

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      -+++++.||.|++|++++.  +  .++.+|.+|..+|..++|+.++.    .+++++.|+.|++||+++|+++..+..- 
T Consensus       229 LlLS~gmD~~vklW~vy~~--~--~~lrtf~gH~k~Vrd~~~s~~g~----~fLS~sfD~~lKlwDtETG~~~~~f~~~-  299 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDD--R--RCLRTFKGHRKPVRDASFNNCGT----SFLSASFDRFLKLWDTETGQVLSRFHLD-  299 (503)
T ss_pred             EEEecCCCceEEEEEEecC--c--ceehhhhcchhhhhhhhccccCC----eeeeeecceeeeeeccccceEEEEEecC-
Confidence            3688999999999999995  3  68889999999999999998887    7999999999999999999999888762 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                              ..+.|+.+.+.+.+       .+++|..|+.|..||++.++        .+..++ .|-+.|..+.|-+++.
T Consensus       300 --------~~~~cvkf~pd~~n-------~fl~G~sd~ki~~wDiRs~k--------vvqeYd-~hLg~i~~i~F~~~g~  355 (503)
T KOG0282|consen  300 --------KVPTCVKFHPDNQN-------IFLVGGSDKKIRQWDIRSGK--------VVQEYD-RHLGAILDITFVDEGR  355 (503)
T ss_pred             --------CCceeeecCCCCCc-------EEEEecCCCcEEEEeccchH--------HHHHHH-hhhhheeeeEEccCCc
Confidence                    44555555555433       99999999999999998665        333444 3567899999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--ceeEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMS  253 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~  253 (341)
                      ++++.+.|+.++||+.+....+.....+..        ....++..  +|++++++.-+.|+.|.+|.+...-  ...+.
T Consensus       356 rFissSDdks~riWe~~~~v~ik~i~~~~~--------hsmP~~~~--~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~  425 (503)
T KOG0282|consen  356 RFISSSDDKSVRIWENRIPVPIKNIADPEM--------HTMPCLTL--HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR  425 (503)
T ss_pred             eEeeeccCccEEEEEcCCCccchhhcchhh--------ccCcceec--CCCCCeehhhccCceEEEEecccccccCHhhh
Confidence            999999999999999988766655444322        22556777  8899999999999999999865421  12455


Q ss_pred             EEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEE
Q 019405          254 FDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWD  329 (341)
Q Consensus       254 ~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd  329 (341)
                      +.+|..  .-..+.|||||.+|++|+.||.+.+||.++-+++..++.| ..++..+.|+|... .+|+++.||.|++||
T Consensus       426 feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  426 FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence            667643  3456899999999999999999999999999999999998 99999999999664 899999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-32  Score=225.24  Aligned_cols=268  Identities=19%  Similarity=0.260  Sum_probs=222.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.+|.+++|++...     +....+..|...+..+.++++..    +|++++.||.|++|++.+++....+.. 
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~----~l~~~~~~~~i~i~~~~~~~~~~~~~~-   91 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPVRDVAASADGT----YLASGSSDKTIRLWDLETGECVRTLTG-   91 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCC-----CcEEEEecCCcceeEEEECCCCC----EEEEEcCCCeEEEEEcCcccceEEEec-
Confidence            45777888999999999876     34556667888887888887664    799999999999999998777666664 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+.++.+.+...        .+++++.+|.+.+|++....        .+..+. .+...+.++.++|++
T Consensus        92 -------~~~~i~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~  147 (289)
T cd00200          92 -------HTSYVSSVAFSPDGR--------ILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG  147 (289)
T ss_pred             -------cCCcEEEEEEcCCCC--------EEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence                   345788888776643        77777779999999986322        334444 356789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      .++++++.++.|++||+++++....+..+.         ..+.++.|  .|+++.+++++.|+.|++||++.++ ++..+
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~  215 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL  215 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEE--CCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence            999988889999999999887777666432         46899999  8899899999999999999999755 37777


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ..|...+.++.|+|++.++++++.++.|++||+.+++.+..+..| ...|.+++|+|++++|++++.|+.|++|+
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            778889999999999888888888999999999999999989877 88999999999999999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.1e-34  Score=224.53  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=226.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +.+++.|.+..+|.+...  +..++..++-+|..+|..+.||||+.    +|++++.|..+++||+.+|.....+..   
T Consensus       239 LAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~~e~~~lwDv~tgd~~~~y~~---  309 (519)
T KOG0293|consen  239 LASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQPVSYIMWSPDDR----YLLACGFDEVLSLWDVDTGDLRHLYPS---  309 (519)
T ss_pred             EeeccCCceEEEEEEecC--cceeeeeeeecccCceEEEEECCCCC----eEEecCchHheeeccCCcchhhhhccc---
Confidence            445555666688888876  44677889999999999999999888    899999999999999999999888776   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                          ..+..+.+.+|++...        .+++|+.|+.+..|+++..         .+..|.-.....|.++++.+||++
T Consensus       310 ----~~~~S~~sc~W~pDg~--------~~V~Gs~dr~i~~wdlDgn---------~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  310 ----GLGFSVSSCAWCPDGF--------RFVTGSPDRTIIMWDLDGN---------ILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             ----CcCCCcceeEEccCCc--------eeEecCCCCcEEEecCCcc---------hhhcccccccceeEEEEEcCCCcE
Confidence                2346788888888877        8999999999999998543         355677666677999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      +++.+.|..|++|+.++.........+          .+|++...  +.+++++++.-.+..+++||+.... .++.+.+
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lise~----------~~its~~i--S~d~k~~LvnL~~qei~LWDl~e~~-lv~kY~G  435 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLISEE----------QPITSFSI--SKDGKLALVNLQDQEIHLWDLEENK-LVRKYFG  435 (519)
T ss_pred             EEEEecccceeeechhhhhhhcccccc----------CceeEEEE--cCCCcEEEEEcccCeeEEeecchhh-HHHHhhc
Confidence            999999999999999875544333332          44888888  8999999999999999999999654 4788888


Q ss_pred             cCCC--eEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405          257 RETP--IKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       257 ~~~~--v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                      |...  +-.-+|.. +..++++|+.|+.|+||+..+++++..+.|| ...|++++|+|..+ .+|++|.||+||||....
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            7654  33345644 4489999999999999999999999999999 99999999999765 799999999999998764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-33  Score=208.13  Aligned_cols=251  Identities=17%  Similarity=0.220  Sum_probs=211.1

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..+..++++|.++.|+.+++    |.++++.|.+|++|++..+.+++++.+|        ..++..++....+.      
T Consensus        11 ~~l~~~qgaV~avryN~dGn----Y~ltcGsdrtvrLWNp~rg~liktYsgh--------G~EVlD~~~s~Dns------   72 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGN----YCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHEVLDAALSSDNS------   72 (307)
T ss_pred             eeecccccceEEEEEccCCC----EEEEcCCCceEEeecccccceeeeecCC--------Cceeeecccccccc------
Confidence            45677899999999998887    9999999999999999999999999984        46666666655555      


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC--Cceeeec
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTA  200 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~  200 (341)
                        .+++++.|..+.+||++.++        .++.|.. |.+.|..++|+.+...+++|+.|.++++||.++  .++++.+
T Consensus        73 --kf~s~GgDk~v~vwDV~TGk--------v~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil  141 (307)
T KOG0316|consen   73 --KFASCGGDKAVQVWDVNTGK--------VDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL  141 (307)
T ss_pred             --ccccCCCCceEEEEEcccCe--------eeeeccc-ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence              89999999999999998766        6778874 788999999999999999999999999999985  3455555


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      ....         ..|.++..    .+..+++|+.||++|.||++.+.. ...+  -..+|++++|+++++..++++.|+
T Consensus       142 dea~---------D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l-~sDy--~g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  142 DEAK---------DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             hhhc---------CceeEEEe----cccEEEeeccCCcEEEEEeeccee-ehhh--cCCcceeEEecCCCCEEEEeeccc
Confidence            4433         45888887    567899999999999999998764 3333  345899999999999999999999


Q ss_pred             CEEEEECCCCeEEeEEeccccCcee--EEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++++.|-.+|+++..+++| .+.=+  ..+++....++++||+||.|++||+.....+..+
T Consensus       206 tlrLlDk~tGklL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  206 TLRLLDKETGKLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             eeeecccchhHHHHHhccc-ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeee
Confidence            9999999999999999998 44333  3456667779999999999999999988776654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.5e-33  Score=211.24  Aligned_cols=268  Identities=17%  Similarity=0.177  Sum_probs=221.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++++.|..|-+|+...+....+    .+.+|.++|.-+.|..|++    .|++++.|.+|+.||.++|+.....+.|.
T Consensus        61 ~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~d~s----~i~S~gtDk~v~~wD~~tG~~~rk~k~h~  132 (338)
T KOG0265|consen   61 CFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMRDGS----HILSCGTDKTVRGWDAETGKRIRKHKGHT  132 (338)
T ss_pred             eEeecCCcceEEEEecccccccee----eeccccceeEeeeeccCCC----EEEEecCCceEEEEecccceeeehhcccc
Confidence            367888888999999887643333    4568999999999988888    89999999999999999999999988863


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                              +-+..+.-...+.       ..+.+++.|+++++||++...        .++.+.  ..-.++++.|..++.
T Consensus       133 --------~~vNs~~p~rrg~-------~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  133 --------SFVNSLDPSRRGP-------QLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTSD  187 (338)
T ss_pred             --------ceeeecCccccCC-------eEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEeccccc
Confidence                    2233333111111       278889999999999997544        444442  234788999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---CceeE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRPVM  252 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~  252 (341)
                      .+.+|+-|+.|++||++.......+.+|.         ..|+.+..  +++|.++.+-+.|.++++||++..   ++.+.
T Consensus       188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsl--s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  188 QVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSL--SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             ceeeccccCceeeeccccCcceEEeeccc---------CceeeEEe--ccCCCccccccccceEEEEEecccCCCCceEE
Confidence            99999999999999999999999988865         66999999  899999999999999999999853   33467


Q ss_pred             EEEecCC----CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          253 SFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       253 ~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      .+.+|..    ....++|+|++..+.+|+.|..+++||......++.+++| .+.|++++|+|..++|.+++.|.+|++=
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCceeEee
Confidence            7776532    3456789999999999999999999999999999999999 9999999999999999999999998863

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.8e-32  Score=221.98  Aligned_cols=291  Identities=16%  Similarity=0.150  Sum_probs=227.5

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeecc---CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWG---DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      .-++++.+.||++.+++-.+.     +.+..+.   +|.+.++.++|+||..    .+++++.|.+++|||+.+++++++
T Consensus       202 G~~Fat~gsDgki~iyDGktg-----e~vg~l~~~~aHkGsIfalsWsPDs~----~~~T~SaDkt~KIWdVs~~slv~t  272 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTG-----EKVGELEDSDAHKGSIFALSWSPDST----QFLTVSADKTIKIWDVSTNSLVST  272 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCc-----cEEEEecCCCCccccEEEEEECCCCc----eEEEecCCceEEEEEeeccceEEE
Confidence            356778888888888776655     5566676   6999999999998888    799999999999999998877776


Q ss_pred             eeccC-----------------------------------CCCCCCCCCceeeEeeeeccccccccccceeEEEccccee
Q 019405           91 ISNAG-----------------------------------DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (341)
Q Consensus        91 ~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  135 (341)
                      +..-.                                   ....++|.+.|+++...+...        .+++++.||.+
T Consensus       273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--------~i~SgsyDG~I  344 (603)
T KOG0318|consen  273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--------TIYSGSYDGHI  344 (603)
T ss_pred             eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC--------EEEeeccCceE
Confidence            64311                                   111246788888888887776        99999999999


Q ss_pred             EEEEeeeccc-----------------------ccccCCceEEEEEeecC------------------------------
Q 019405          136 SMRSIEVTKV-----------------------SAESSCSTVKSWNVCAS------------------------------  162 (341)
Q Consensus       136 ~i~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~------------------------------  162 (341)
                      .-|+......                       .+.+.|.++++......                              
T Consensus       345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence            9999765422                       02233444444432110                              


Q ss_pred             -------------------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          163 -------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       163 -------------------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                                         -...+++++|+++.++.|+.|+.|++|.+.......+...       ..|...|++++|  
T Consensus       425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-------~~h~a~iT~vay--  495 (603)
T KOG0318|consen  425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-------LEHRAAITDVAY--  495 (603)
T ss_pred             cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-------ecccCCceEEEE--
Confidence                               1245779999999999999999999999986554332221       124577999999  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      +|++.+|+++...+.+.+||+.+.+.....+..|...|.+++|+|+..++|+|+.|..|.||++......-.+++.|...
T Consensus       496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~g  575 (603)
T KOG0318|consen  496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGG  575 (603)
T ss_pred             CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccC
Confidence            99999999999999999999998776566677799999999999999999999999999999998765545555545778


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      |+.+.|- +...+++.+.|..|++|++.
T Consensus       576 Vn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  576 VNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ceeEEEe-cCceEEeccCcceeEEeccc
Confidence            9999996 55688899999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.7e-33  Score=215.33  Aligned_cols=269  Identities=12%  Similarity=0.094  Sum_probs=232.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+.+++.|+++++|++..+     ++..++.+|-..+.-+++|....    ||.+++.|+.|+.||++.++.++.+.+ 
T Consensus       164 ~wf~tgs~DrtikIwDlatg-----~LkltltGhi~~vr~vavS~rHp----YlFs~gedk~VKCwDLe~nkvIR~YhG-  233 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLATG-----QLKLTLTGHIETVRGVAVSKRHP----YLFSAGEDKQVKCWDLEYNKVIRHYHG-  233 (460)
T ss_pred             eeEEecCCCceeEEEEcccC-----eEEEeecchhheeeeeeecccCc----eEEEecCCCeeEEEechhhhhHHHhcc-
Confidence            45788999999999999987     67778999999999999987665    999999999999999999999999887 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             |-..+.|+...+..+        .+++++.|.++++||++...        .|.+.. .|..+|..+.+.|-.
T Consensus       234 -------HlS~V~~L~lhPTld--------vl~t~grDst~RvWDiRtr~--------~V~~l~-GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  234 -------HLSGVYCLDLHPTLD--------VLVTGGRDSTIRVWDIRTRA--------SVHVLS-GHTNPVASVMCQPTD  289 (460)
T ss_pred             -------ccceeEEEeccccce--------eEEecCCcceEEEeeecccc--------eEEEec-CCCCcceeEEeecCC
Confidence                   457799999988888        99999999999999997543        455544 377899999999988


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ..+++|+.|++|++||++.++....+..|.         ..+.+++.  +|....+++++.| .|+-|++..+.. ++.+
T Consensus       290 pqvit~S~D~tvrlWDl~agkt~~tlt~hk---------ksvral~l--hP~e~~fASas~d-nik~w~~p~g~f-~~nl  356 (460)
T KOG0285|consen  290 PQVITGSHDSTVRLWDLRAGKTMITLTHHK---------KSVRALCL--HPKENLFASASPD-NIKQWKLPEGEF-LQNL  356 (460)
T ss_pred             CceEEecCCceEEEeeeccCceeEeeeccc---------ceeeEEec--CCchhhhhccCCc-cceeccCCccch-hhcc
Confidence            899999999999999999999888888765         44889999  7889999999877 589999998876 7779


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe---cc----ccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---GK----CSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~----~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      .+|+.-|.+++.+.|+ ++++|+..|.+.+||.++|...+..+   ..    .+..|++.+|...|..|++|..|.+|++
T Consensus       357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence            9999999999998887 78899999999999999885544331   11    2467999999999999999999999999


Q ss_pred             EEcC
Q 019405          328 WDIK  331 (341)
Q Consensus       328 wd~~  331 (341)
                      |.-.
T Consensus       436 ~keD  439 (460)
T KOG0285|consen  436 YKED  439 (460)
T ss_pred             Eecc
Confidence            9754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=236.78  Aligned_cols=253  Identities=19%  Similarity=0.219  Sum_probs=215.0

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +...+.++.|++++.    +|++++.|+.+++|+..+.+  .+..+..        |...+..+.|.+...        .
T Consensus       158 ~~~sv~~~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~~l~~--------h~~~v~~~~fs~d~~--------~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLRELSG--------HTRGVSDVAFSPDGS--------Y  217 (456)
T ss_pred             ccCceEEEEEcCCCC----eEEEccCCCcEEEeecccccchhhccccc--------cccceeeeEECCCCc--------E
Confidence            467888888888777    89999999999999997776  4444433        557788888888777        9


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      +++++.|++++||++...       ...++... .|...|++++|+|+++++++|+.|++|++||+++++....+..|. 
T Consensus       218 l~s~s~D~tiriwd~~~~-------~~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-  288 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDD-------GRNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-  288 (456)
T ss_pred             EEEecCCceEEEeeccCC-------CeEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-
Confidence            999999999999998322       12556665 688899999999999999999999999999999999999999876 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCC--eEEEEEcCCCceEEEEeCCCCE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDL  282 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~l~~g~~dg~i  282 (341)
                              ..|++++|  ++++++|++++.|+.|++||+.++.. .+..+..+..+  ++++.|+|++.++++++.|+.+
T Consensus       289 --------~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  289 --------DGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             --------CceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence                    56999999  99999999999999999999998763 24566665555  9999999999999999999999


Q ss_pred             EEEECCCCeEEeEEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          283 ASVDIRTGKLLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++||+..+..+..+.+|...  .+.+...++.+.++++++.|+.|++||+.++..+..+
T Consensus       359 ~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l  417 (456)
T KOG0266|consen  359 KLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL  417 (456)
T ss_pred             EEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence            99999999999999998444  4555566789999999999999999999987765543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.9e-32  Score=213.47  Aligned_cols=285  Identities=14%  Similarity=0.119  Sum_probs=224.8

Q ss_pred             CCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        12 ~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      ..+-.+++++-||.+++|+....      ....+.+|.+++..+++-...... ..|++++.|.++++|.++.+......
T Consensus       113 ~~~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~-~~fvsas~Dqtl~Lw~~~~~~~~~~~  185 (423)
T KOG0313|consen  113 GASKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSS-CLFVSASMDQTLRLWKWNVGENKVKA  185 (423)
T ss_pred             ccCceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCcc-ceEEEecCCceEEEEEecCchhhhhH
Confidence            34577999999999999998864      566788999999866644333322 26999999999999999876543322


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc-----------------cccCCceE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-----------------AESSCSTV  154 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~-----------------~~~~~~~v  154 (341)
                      ...    ..+|...+.++...+...        .+++++.|..+.||+.+.....                 .+....++
T Consensus       186 ~~~----~~GHk~~V~sVsv~~sgt--------r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  186 LKV----CRGHKRSVDSVSVDSSGT--------RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             HhH----hcccccceeEEEecCCCC--------eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            211    014667787777766666        9999999999999994332210                 01111122


Q ss_pred             EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                       +--..|.++|..+.|++ ...+++++.|.+|+.||++++.....+...          ..+.++.+  .|..++|++|+
T Consensus       254 -vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~--~~~~~Ll~~gs  319 (423)
T KOG0313|consen  254 -VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISY--SPLSKLLASGS  319 (423)
T ss_pred             -EEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeec--ccccceeeecC
Confidence             22234678999999987 778999999999999999999888777654          44889999  78999999999


Q ss_pred             CCCeEEEEEcCCCC--ceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEec
Q 019405          235 NDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       235 ~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~  310 (341)
                      .|..|++||.+++.  ...+++.+|+..|.++.|+|.. .+|++|+.|+++++||+++.+ +++.+.+| .+.|.++.|+
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~  398 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN  398 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc
Confidence            99999999998753  4567888999999999999966 678899999999999999887 89999998 9999999996


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC
Q 019405          311 PTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       311 ~~~~~l~s~~~dg~v~iwd~~  331 (341)
                       ++..+++|+.|.+|+|+.-.
T Consensus       399 -~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 -EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             -CCceEEeccCcceEEEeccc
Confidence             56689999999999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.8e-33  Score=238.05  Aligned_cols=262  Identities=12%  Similarity=0.086  Sum_probs=213.0

Q ss_pred             eeeeecCCCCeEEEEEecCc--------------------------cCccceeeeccCCCCCceeEEEeccCCCCCceEE
Q 019405           16 RALTFDSLGLIKVIEARGEH--------------------------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLA   69 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~--------------------------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~   69 (341)
                      .+.+|-.|-.|++|.+....                          ........++-+|.++|+...|+|+.+    +|+
T Consensus       392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~r----fLl  467 (707)
T KOG0263|consen  392 MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRR----FLL  467 (707)
T ss_pred             hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccccc----cee
Confidence            35667788888888877310                          000012245678999999999999888    999


Q ss_pred             EEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc
Q 019405           70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES  149 (341)
Q Consensus        70 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~  149 (341)
                      +++.|++||+|.+.+..++-.+++|        ..++..+.+.+.+-        ++++++.|++.++|..+...     
T Consensus       468 ScSED~svRLWsl~t~s~~V~y~GH--------~~PVwdV~F~P~Gy--------YFatas~D~tArLWs~d~~~-----  526 (707)
T KOG0263|consen  468 SCSEDSSVRLWSLDTWSCLVIYKGH--------LAPVWDVQFAPRGY--------YFATASHDQTARLWSTDHNK-----  526 (707)
T ss_pred             eccCCcceeeeecccceeEEEecCC--------CcceeeEEecCCce--------EEEecCCCceeeeeecccCC-----
Confidence            9999999999999998888888874        45666666654444        99999999999999977543     


Q ss_pred             CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                         ++|++- .|-..|.|++|+|+.+++++||.|.+|++||+.+|..++.|.+|.         .+|.+++|  +|+|.+
T Consensus       527 ---PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~---------~~V~al~~--Sp~Gr~  591 (707)
T KOG0263|consen  527 ---PLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK---------GPVTALAF--SPCGRY  591 (707)
T ss_pred             ---chhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC---------CceEEEEE--cCCCce
Confidence               666665 467899999999999999999999999999999999999998865         67999999  899999


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe------------------
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------------------  291 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~------------------  291 (341)
                      |++|+.|+.|.+||+.+++. +..+.+|.+.|.++.|+.+|..||+|+.|++|++||+..-.                  
T Consensus       592 LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~  670 (707)
T KOG0263|consen  592 LASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQE  670 (707)
T ss_pred             EeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccccccccc
Confidence            99999999999999999775 88999999999999999999999999999999999986321                  


Q ss_pred             ------EEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          292 ------LLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       292 ------~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                            ++..+... ..+|..+.|....-.|+.|
T Consensus       671 ~~~~~~llgs~~tK-~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  671 NNASSLLLGSFYTK-NTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             CCCCcceeeeeeec-CceEEEEEEeccceeEEec
Confidence                  33444444 5577777776655444443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.6e-32  Score=234.50  Aligned_cols=273  Identities=17%  Similarity=0.234  Sum_probs=228.6

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC-CCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~   95 (341)
                      +++++.++.+++|.......   .+...+.+|...|..++|+++++    ++++++.|++|+|||+ ..+..++++.+  
T Consensus       174 l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiriwd~~~~~~~~~~l~g--  244 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRIWDLKDDGRNLKTLKG--  244 (456)
T ss_pred             EEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCc----EEEEecCCceEEEeeccCCCeEEEEecC--
Confidence            66677888889999855411   24556678999999999999888    8999999999999999 55578888887  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            |...+.++.+.+...        .+++|+.|++++||++....        .++.+.. |...|.+++|+++++
T Consensus       245 ------H~~~v~~~~f~p~g~--------~i~Sgs~D~tvriWd~~~~~--------~~~~l~~-hs~~is~~~f~~d~~  301 (456)
T KOG0266|consen  245 ------HSTYVTSVAFSPDGN--------LLVSGSDDGTVRIWDVRTGE--------CVRKLKG-HSDGISGLAFSPDGN  301 (456)
T ss_pred             ------CCCceEEEEecCCCC--------EEEEecCCCcEEEEeccCCe--------EEEeeec-cCCceEEEEECCCCC
Confidence                  457788888887775        99999999999999997533        6666664 677999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      +|++++.|+.|++||+.++.  ....+..+...      . +++++.|  +|++.++++++.|+.+++||++.+.. +..
T Consensus       302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------~-~~~~~~f--sp~~~~ll~~~~d~~~~~w~l~~~~~-~~~  371 (456)
T KOG0266|consen  302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------A-PVTSVQF--SPNGKYLLSASLDRTLKLWDLRSGKS-VGT  371 (456)
T ss_pred             EEEEcCCCccEEEEECCCCceeeeecccCCCCC------C-ceeEEEE--CCCCcEEEEecCCCeEEEEEccCCcc-eee
Confidence            99999999999999999988  34555544321      1 5899999  89999999999999999999998775 777


Q ss_pred             EEecCCC---eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEE
Q 019405          254 FDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFW  328 (341)
Q Consensus       254 ~~~~~~~---v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iw  328 (341)
                      +.+|...   +.+...++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.++|..+++++++  .|+.+++|
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w  451 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW  451 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence            8887764   334455788999999999999999999999999999887467889999999999999998  78999999


Q ss_pred             EcC
Q 019405          329 DIK  331 (341)
Q Consensus       329 d~~  331 (341)
                      ..+
T Consensus       452 ~~~  454 (456)
T KOG0266|consen  452 KYD  454 (456)
T ss_pred             cCC
Confidence            764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=225.96  Aligned_cols=275  Identities=14%  Similarity=0.145  Sum_probs=229.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-CeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~   95 (341)
                      ++++-..|...++++.+-     .+++.+.-.+.++..++|+..+.    +||.|+.. |.+-||++++...+.+.++  
T Consensus       280 lvvgFssG~f~LyelP~f-----~lih~LSis~~~I~t~~~N~tGD----WiA~g~~klgQLlVweWqsEsYVlKQQg--  348 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPDF-----NLIHSLSISDQKILTVSFNSTGD----WIAFGCSKLGQLLVWEWQSESYVLKQQG--  348 (893)
T ss_pred             EEEEecCCeeEEEecCCc-----eEEEEeecccceeeEEEecccCC----EEEEcCCccceEEEEEeeccceeeeccc--
Confidence            456667777788888776     67777766777888888776555    99998754 8999999998877766665  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            |-..+.++++.+...        .+++|++||.++||+...+-        .+..|. .|...|+.+.|+..++
T Consensus       349 ------H~~~i~~l~YSpDgq--------~iaTG~eDgKVKvWn~~Sgf--------C~vTFt-eHts~Vt~v~f~~~g~  405 (893)
T KOG0291|consen  349 ------HSDRITSLAYSPDGQ--------LIATGAEDGKVKVWNTQSGF--------CFVTFT-EHTSGVTAVQFTARGN  405 (893)
T ss_pred             ------cccceeeEEECCCCc--------EEEeccCCCcEEEEeccCce--------EEEEec-cCCCceEEEEEEecCC
Confidence                  457788998887777        99999999999999975432        444454 5788999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCceeEEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~  254 (341)
                      .+++.+.||+|+.||+...+..+++..+..        ....|++.  .|.|.++..|+.|. .|.+|++++++. +-.+
T Consensus       406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p--------~Qfscvav--D~sGelV~AG~~d~F~IfvWS~qTGql-lDiL  474 (893)
T KOG0291|consen  406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEP--------IQFSCVAV--DPSGELVCAGAQDSFEIFVWSVQTGQL-LDIL  474 (893)
T ss_pred             EEEEeecCCeEEeeeecccceeeeecCCCc--------eeeeEEEE--cCCCCEEEeeccceEEEEEEEeecCee-eehh
Confidence            999999999999999999998888887753        44678888  88999999998886 599999999875 8899


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .+|++||.+++|+|++..|++++.|.+|++||+-.. ..+.++..  ...+..++|+|+|+.|+.+..||.|.+||++.+
T Consensus       475 sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  475 SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             cCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            999999999999999999999999999999998654 33444543  568999999999999999999999999999988


Q ss_pred             ceeee
Q 019405          334 QLLSA  338 (341)
Q Consensus       334 ~~~~~  338 (341)
                      ..+..
T Consensus       553 ~q~~~  557 (893)
T KOG0291|consen  553 VQVGS  557 (893)
T ss_pred             eeecc
Confidence            76644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-32  Score=226.37  Aligned_cols=268  Identities=12%  Similarity=0.085  Sum_probs=231.5

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .++++--.|.+.+|+..+.     .++..+.-.+.+|....|-..-.    ++++|+.|..||||+..+++.+..+..  
T Consensus        27 w~la~LynG~V~IWnyetq-----tmVksfeV~~~PvRa~kfiaRkn----Wiv~GsDD~~IrVfnynt~ekV~~FeA--   95 (794)
T KOG0276|consen   27 WILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVRAAKFIARKN----WIVTGSDDMQIRVFNYNTGEKVKTFEA--   95 (794)
T ss_pred             eEEEeeecCeeEEEecccc-----eeeeeeeecccchhhheeeeccc----eEEEecCCceEEEEecccceeeEEeec--
Confidence            4677888999999999987     67778876777887776665444    999999999999999999999999887  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SE  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~  174 (341)
                            |.+.+.+++..+...        .+++++.|-.+++|+.+..=       .....|. .|..-|.+++|+| |.
T Consensus        96 ------H~DyIR~iavHPt~P--------~vLtsSDDm~iKlW~we~~w-------a~~qtfe-GH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   96 ------HSDYIRSIAVHPTLP--------YVLTSSDDMTIKLWDWENEW-------ACEQTFE-GHEHYVMQVAFNPKDP  153 (794)
T ss_pred             ------cccceeeeeecCCCC--------eEEecCCccEEEEeeccCce-------eeeeEEc-CcceEEEEEEecCCCc
Confidence                  568899999988877        99999999999999976432       1344555 3667899999999 56


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +.+++++.|++|++|.+.+..+..++++|.         ..|+|+.|.+.++..+|++|+.|.+|+|||.++..+ ++++
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-V~TL  223 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-VQTL  223 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceEEEeecchHHH-HHHh
Confidence            899999999999999999988888888865         559999998777888999999999999999999655 9999


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      .+|...|..+.|+|.-.++++|+.||+++||+..+-++..++... ...+++++-.+.++.++.|.+.|.|.+
T Consensus       224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999999999999999999999998888887765 789999999998888888887776543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.2e-31  Score=217.19  Aligned_cols=254  Identities=19%  Similarity=0.301  Sum_probs=212.8

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ++.+|..++.++++++++.    +|++++.||.|++|++.+++....+..        +...+..+.+.+...       
T Consensus         4 ~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~-------   64 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKG--------HTGPVRDVAASADGT-------   64 (289)
T ss_pred             HhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEec--------CCcceeEEEECCCCC-------
Confidence            5668999999999988755    899999999999999988776555554        335566777766654       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                       .+++++.+|.+.+|++....        .+..+. .+...+.++.|+++++++++++.++.|.+||+++++....+..+
T Consensus        65 -~l~~~~~~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  134 (289)
T cd00200          65 -YLASGSSDKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH  134 (289)
T ss_pred             -EEEEEcCCCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence             89999999999999986432        334444 34568999999999889998888999999999988877777643


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                      .         ..+.++.|  +|++.++++++.|+.|++||++..+. +..+..|...+.++.|+|+++.+++++.++.|+
T Consensus       135 ~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  202 (289)
T cd00200         135 T---------DWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK  202 (289)
T ss_pred             C---------CcEEEEEE--cCcCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence            3         56999999  77888888888899999999987654 777888888999999999999999999999999


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +||+++++.+..+..| ...+.+++|+|++.++++++.|+.|++||+.+++.+..+
T Consensus       203 i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         203 LWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             EEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence            9999999999888777 789999999999889998888999999999988777654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.2e-31  Score=243.71  Aligned_cols=275  Identities=14%  Similarity=0.141  Sum_probs=210.6

Q ss_pred             ceeeeecCCCCeEEEEEecCc-cC--ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           15 LRALTFDSLGLIKVIEARGEH-GG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      -.+++++.||.|++|+..... .+  .......+. +...+..++|++..   +.+|++++.||+|+|||+.+++.+..+
T Consensus       496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~---~~~las~~~Dg~v~lWd~~~~~~~~~~  571 (793)
T PLN00181        496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYI---KSQVASSNFEGVVQVWDVARSQLVTEM  571 (793)
T ss_pred             CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCC---CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            347788999999999975420 01  111122232 34567777776543   347999999999999999988877777


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ..        |.+.+.++.+.+.+..       .|++++.|+.+++|++....        .+..+.  ....+.++.|+
T Consensus       572 ~~--------H~~~V~~l~~~p~~~~-------~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~~  626 (793)
T PLN00181        572 KE--------HEKRVWSIDYSSADPT-------LLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQFP  626 (793)
T ss_pred             cC--------CCCCEEEEEEcCCCCC-------EEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEEe
Confidence            65        4577889988764432       89999999999999986432        333333  34578899995


Q ss_pred             -CCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--
Q 019405          172 -ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--  247 (341)
Q Consensus       172 -~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--  247 (341)
                       +++.++++|+.|+.|++||+++.+ ....+..|         ...|.++.|  . ++.+|++++.|++|++||++..  
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h---------~~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~~  694 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH---------SKTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSIS  694 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCccceEecCC---------CCCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCcc
Confidence             578999999999999999998754 34444443         356999999  4 6779999999999999999753  


Q ss_pred             ---CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe------------ccccCceeEEEecCC
Q 019405          248 ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------------GKCSGSIRSIARHPT  312 (341)
Q Consensus       248 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~~~~~~i~~~~~~~~  312 (341)
                         ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+.            .++...|.+++|+|+
T Consensus       695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence               23578888999999999999999999999999999999987665443221            112457999999999


Q ss_pred             CCEEEEEeCCCcEEEEEc
Q 019405          313 LPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~  330 (341)
                      +..|++++.||.|+||++
T Consensus       775 ~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCeEEEecCCCcEEEEec
Confidence            999999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.7e-31  Score=244.96  Aligned_cols=277  Identities=14%  Similarity=0.102  Sum_probs=209.3

Q ss_pred             CCCeEEEEEecCccCccce--eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  100 (341)
                      +|..++|+.....  ....  ...+..|...|.+++|++++.    +||+|+.|++|+||+......... ..+.+....
T Consensus       457 ~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~~~  529 (793)
T PLN00181        457 EGLCKYLSFSKLR--VKADLKQGDLLNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGR-DIHYPVVEL  529 (793)
T ss_pred             hhhhhhhcccceE--EEEeeccccccCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCccccccc-ccccceEEe
Confidence            5666777666541  0000  012334788899999987665    899999999999999754211000 000000000


Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEE
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLF  179 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~  179 (341)
                      .+...+.++.|.+....       .+++++.||.+++|++....        .+..+. .|...|.+++|+| ++.+|++
T Consensus       530 ~~~~~v~~l~~~~~~~~-------~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~~~~L~S  593 (793)
T PLN00181        530 ASRSKLSGICWNSYIKS-------QVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSADPTLLAS  593 (793)
T ss_pred             cccCceeeEEeccCCCC-------EEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCCCCEEEE
Confidence            12345667777654332       89999999999999986433        344443 4678899999996 7899999


Q ss_pred             eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 019405          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET  259 (341)
Q Consensus       180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  259 (341)
                      |+.|+.|++||++++..+..+..+          ..+.++.|. ++++.+|++|+.|+.|++||++..+.++..+.+|..
T Consensus       594 gs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        594 GSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             EcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence            999999999999988877766532          337888885 467899999999999999999986655778888999


Q ss_pred             CeEEEEEcCCCceEEEEeCCCCEEEEECCC------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .|.++.|. ++.+|++++.|+.|++||++.      .+++..+.+| ...+..++|+|++.+|++|+.|+.|++|+....
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999997 677999999999999999974      3577888888 889999999999999999999999999998755


Q ss_pred             ce
Q 019405          334 QL  335 (341)
Q Consensus       334 ~~  335 (341)
                      ..
T Consensus       741 ~~  742 (793)
T PLN00181        741 MP  742 (793)
T ss_pred             Cc
Confidence            43

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=203.48  Aligned_cols=258  Identities=14%  Similarity=0.203  Sum_probs=210.9

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      .+...+.+|.+.|+...|.|++.    +||+|+.|..|.+|++. +.+....+++        |.+.+..+.+.....  
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s--  103 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGS----CFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGS--  103 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCC----eEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCC--
Confidence            34456778999999999998666    89999999999999964 2233334444        568899999988777  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCcee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI  197 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~  197 (341)
                            .+++++.|.++..||++.++        .++.+.. |...+..+....-| .++.+++.|+++++||+++...+
T Consensus       104 ------~i~S~gtDk~v~~wD~~tG~--------~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~  168 (338)
T KOG0265|consen  104 ------HILSCGTDKTVRGWDAETGK--------RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI  168 (338)
T ss_pred             ------EEEEecCCceEEEEecccce--------eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence                  99999999999999998665        4555543 45667777754444 56778999999999999988877


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~  277 (341)
                      ..++..          ..++++.|  ...+..+.+|+-|+.|++||++.... ...+.+|.++|+.+..+|+|.++.+-+
T Consensus       169 ~t~~~k----------yqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  169 KTFENK----------YQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             hccccc----------eeEEEEEe--cccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCCcccccc
Confidence            776543          44899999  78899999999999999999998765 899999999999999999999999999


Q ss_pred             CCCCEEEEECCCC----eEEeEEeccc---cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          278 GSGDLASVDIRTG----KLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       278 ~dg~i~iwd~~~~----~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|.++++||++-.    +++..+.+|.   +......+|+|++..+.+++.|..+++||..+...+..+
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence            9999999999853    4577777761   234567889999999999999999999999887766554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=231.12  Aligned_cols=272  Identities=11%  Similarity=0.162  Sum_probs=229.4

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ...+++++.+.++++|+....     ..+.. +.+|.+.|..+++....    ++|++|+.|.+++|||..+|++...+.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd~~sg~C~~~l~  288 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWDCSTGECTHSLQ  288 (537)
T ss_pred             cCeEEecCCCceeEEeecccc-----eEEEeeccCCCCCceeEEEecCC----CEEEEEecCCcEEeEecCCCcEEEEec
Confidence            456788999999999998886     55555 99999999999987633    379999999999999999999999999


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      +|        ...+.++...+.          .+++|+.|.++++|++....        .+.+... |..+|.++..+ 
T Consensus       289 gh--------~stv~~~~~~~~----------~~~sgs~D~tVkVW~v~n~~--------~l~l~~~-h~~~V~~v~~~-  340 (537)
T KOG0274|consen  289 GH--------TSSVRCLTIDPF----------LLVSGSRDNTVKVWDVTNGA--------CLNLLRG-HTGPVNCVQLD-  340 (537)
T ss_pred             CC--------CceEEEEEccCc----------eEeeccCCceEEEEeccCcc--------eEEEecc-ccccEEEEEec-
Confidence            85        344555443221          77888999999999997444        5666665 88999999997 


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                       +.++++|+.|++|++||+.+++++..+.+|.         .+|.++.+  ... +.+++|+.|++|++||+++..+++.
T Consensus       341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~  407 (537)
T KOG0274|consen  341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIV--DSE-NRLLSGSLDTTIKVWDLRTKRKCIH  407 (537)
T ss_pred             -CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEe--cCc-ceEEeeeeccceEeecCCchhhhhh
Confidence             8899999999999999999999999999865         77999988  333 8999999999999999999724589


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .+.+|..-+..+.+  .++.|++++.|+.|++||..++++++.+.+++...|..+++.  ...+++++.|+.+++||+++
T Consensus       408 tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  408 TLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             hhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            99999888866655  567999999999999999999999999998436888888876  56889999999999999999


Q ss_pred             Cceeeee
Q 019405          333 RQLLSAV  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      +++.+++
T Consensus       484 ~~~~~~l  490 (537)
T KOG0274|consen  484 GTLIRTL  490 (537)
T ss_pred             Cchhhhh
Confidence            9988765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=197.34  Aligned_cols=265  Identities=13%  Similarity=0.117  Sum_probs=221.1

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      -+++++.|.++|+|+..+.     .++.++.+|...|.-++.+.|.+    .+++++.|..|.+||+.+|+..+.+.+| 
T Consensus        31 Y~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~vwDV~TGkv~Rr~rgH-  100 (307)
T KOG0316|consen   31 YCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQVWDVNTGKVDRRFRGH-  100 (307)
T ss_pred             EEEEcCCCceEEeeccccc-----ceeeeecCCCceeeecccccccc----ccccCCCCceEEEEEcccCeeeeecccc-
Confidence            3678888888899988887     78999999999999999998888    6999999999999999999999999984 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                             ..++..+.+.+...        .+++++.|..+++||.....      ..+|.+++. ....|.++.++  +.
T Consensus       101 -------~aqVNtV~fNeesS--------Vv~SgsfD~s~r~wDCRS~s------~ePiQilde-a~D~V~Si~v~--~h  156 (307)
T KOG0316|consen  101 -------LAQVNTVRFNEESS--------VVASGSFDSSVRLWDCRSRS------FEPIQILDE-AKDGVSSIDVA--EH  156 (307)
T ss_pred             -------cceeeEEEecCcce--------EEEeccccceeEEEEcccCC------CCccchhhh-hcCceeEEEec--cc
Confidence                   57777777766655        99999999999999986543      336777664 34567787775  56


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  255 (341)
                      .|++|+.||+++.||++.|+.....-.+           +|+++.|  +++++..+.++.|+++++.|-.+++. ++.++
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~sDy~g~-----------pit~vs~--s~d~nc~La~~l~stlrLlDk~tGkl-L~sYk  222 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLSSDYFGH-----------PITSVSF--SKDGNCSLASSLDSTLRLLDKETGKL-LKSYK  222 (307)
T ss_pred             EEEeeccCCcEEEEEeecceeehhhcCC-----------cceeEEe--cCCCCEEEEeeccceeeecccchhHH-HHHhc
Confidence            8999999999999999998877655553           4999999  99999999999999999999999875 88888


Q ss_pred             ecCCCeE--EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc-eeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          256 FRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       256 ~~~~~v~--~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +|...-.  .++++.....+++|+.||.|++||+.+...+..+..+ ... |.++.++|.-..|+++. ++.+..|--
T Consensus       223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEec-CCceeceee
Confidence            8865433  4566777789999999999999999999999999887 555 89999999988777774 345566643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-31  Score=223.71  Aligned_cols=271  Identities=14%  Similarity=0.137  Sum_probs=228.9

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  101 (341)
                      ..+.+++|+....     +.+.+++.  .-+.+..|.+.+.    ++++|..+|.+.+||+.+...+.+++.        
T Consensus       392 a~~SikiWn~~t~-----kciRTi~~--~y~l~~~Fvpgd~----~Iv~G~k~Gel~vfdlaS~~l~Eti~A--------  452 (888)
T KOG0306|consen  392 AGESIKIWNRDTL-----KCIRTITC--GYILASKFVPGDR----YIVLGTKNGELQVFDLASASLVETIRA--------  452 (888)
T ss_pred             CCCcEEEEEccCc-----ceeEEecc--ccEEEEEecCCCc----eEEEeccCCceEEEEeehhhhhhhhhc--------
Confidence            3467799998876     66667733  3555556766666    899999999999999999888888876        


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE---EeecCCceEEEEecCCCCEEE
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW---NVCASGTIAFSKVDISEKFSL  178 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~---~~~~~~~i~~~~~~~~~~~l~  178 (341)
                      |++.+-.+...+.+.        .+++++.|.++++|+........+.....+.+-   .+.-...|.|++++||+++|+
T Consensus       453 HdgaIWsi~~~pD~~--------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La  524 (888)
T KOG0306|consen  453 HDGAIWSISLSPDNK--------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA  524 (888)
T ss_pred             cccceeeeeecCCCC--------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence            567788888888777        899999999999999765543222222222211   111246899999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405          179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (341)
Q Consensus       179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  258 (341)
                      ++-.|++|++|-+++.+....+.+|.         -+|.|+..  +|++++++||+.|.+|++|-+.-+.+ -+++.+|.
T Consensus       525 VsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDI--S~DSklivTgSADKnVKiWGLdFGDC-HKS~fAHd  592 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDC-HKSFFAHD  592 (888)
T ss_pred             EEeccCeEEEEEecceeeeeeecccc---------cceeEEec--cCCcCeEEeccCCCceEEeccccchh-hhhhhccc
Confidence            99999999999999999988888876         56999999  99999999999999999999998776 78888999


Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +.|.++.|-|....+++++.|+.|+-||-...+.++.+.+| ...|++++.+|+|.+++++|.|.+||+|....
T Consensus       593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999999999999999999999999 78999999999999999999999999998754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-30  Score=196.25  Aligned_cols=270  Identities=14%  Similarity=0.128  Sum_probs=212.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAIS   92 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~   92 (341)
                      -+.+|+.|..|++|+....  ..+.+...+. +|...|..+|++|.++    +|++|+.|.++.||.-..+  +++.+++
T Consensus        29 ilAscg~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~----~La~aSFD~t~~Iw~k~~~efecv~~lE  102 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGR----YLASASFDATVVIWKKEDGEFECVATLE  102 (312)
T ss_pred             EEEeecCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCc----EEEEeeccceEEEeecCCCceeEEeeee
Confidence            4778999999999998863  2244444453 4999999999887766    9999999999999987654  4566666


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      +        |+..+-|++|.....        +|++++.|..+.||.+....     +...+-+.+ .|...|..+.|+|
T Consensus       103 G--------HEnEVK~Vaws~sG~--------~LATCSRDKSVWiWe~dedd-----Efec~aVL~-~HtqDVK~V~WHP  160 (312)
T KOG0645|consen  103 G--------HENEVKCVAWSASGN--------YLATCSRDKSVWIWEIDEDD-----EFECIAVLQ-EHTQDVKHVIWHP  160 (312)
T ss_pred             c--------cccceeEEEEcCCCC--------EEEEeeCCCeEEEEEecCCC-----cEEEEeeec-cccccccEEEEcC
Confidence            6        668888998887777        99999999999999987433     222344444 4778999999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405          173 SEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  249 (341)
                      ...+|++++.|++|++|+-..   -+....+..+.         +.|.+++|  ++.|..|++++.|++++||-....- 
T Consensus       161 t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~---------~TVW~~~F--~~~G~rl~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  161 TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE---------NTVWSLAF--DNIGSRLVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             CcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc---------ceEEEEEe--cCCCceEEEecCCcceEeeeeccCc-
Confidence            999999999999999998762   34566777654         45999999  8899999999999999999866421 


Q ss_pred             eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC------eEEeEEeccccCceeEEEecCC-CCEEEEEeCC
Q 019405          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHPT-LPIIASCGLD  322 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d  322 (341)
                        .  ..|..++..+.|.  ...|++++.|+.|++|--...      +++......|...|++++|+|. ..+|++++.|
T Consensus       229 --~--~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  229 --S--GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             --c--hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence              1  2267789999998  448999999999999965532      2233233334889999999995 6799999999


Q ss_pred             CcEEEEEcC
Q 019405          323 SYLRFWDIK  331 (341)
Q Consensus       323 g~v~iwd~~  331 (341)
                      |.|++|.+.
T Consensus       303 G~v~~W~l~  311 (312)
T KOG0645|consen  303 GIVNFWELE  311 (312)
T ss_pred             ceEEEEEec
Confidence            999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-31  Score=198.88  Aligned_cols=267  Identities=13%  Similarity=0.154  Sum_probs=211.0

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQP  101 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~  101 (341)
                      .|.+-+.++.+. .|+. .+..| .-+....-+++|....   +.+++++.||+++|||... ..++..++.        
T Consensus        37 ~G~L~ile~~~~-~gi~-e~~s~-d~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------  102 (311)
T KOG0277|consen   37 NGRLFILEVTDP-KGIQ-ECQSY-DTEDGLFDVAWSENHE---NQVIAASGDGSLRLFDLTMPSKPIHKFKE--------  102 (311)
T ss_pred             CceEEEEecCCC-CCeE-EEEee-ecccceeEeeecCCCc---ceEEEEecCceEEEeccCCCCcchhHHHh--------
Confidence            456666666543 3443 33445 3566778888887665   3588999999999999643 345666665        


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEe
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG  180 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~  180 (341)
                      |..++.++.|......       .+++++-|+++++|+.....        .++.+.- |...|...+|+| ..+.++++
T Consensus       103 H~~EV~Svdwn~~~r~-------~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRR-------IFLTSSWDGTIKLWDPNRPN--------SVQTFNG-HNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             hhhheEEeccccccce-------eEEeeccCCceEeecCCCCc--------ceEeecC-CccEEEEEecCCCCCCeEEEc
Confidence            4577888888766553       78888999999999976544        6667664 778999999999 56899999


Q ss_pred             eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (341)
Q Consensus       181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (341)
                      +.|+++++||++..-....++.|.         ..+.++.|. ..+.+.|++|+.|+.|+.||++..+.|+..+.+|.-.
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEecc---------ceeEeeccc-ccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999999999998644434455543         458999996 5678899999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEc
Q 019405          261 IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       261 v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~  330 (341)
                      |+.++|||.. ..|+++++|-+++|||...+. .+.+.. ||..-+..+.|++ +..++|+++.|+.++||+.
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999965 688999999999999998554 344444 4588999999998 4559999999999999985

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3e-33  Score=217.05  Aligned_cols=233  Identities=13%  Similarity=0.218  Sum_probs=195.3

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ....|+|+.+-      .+.+++|..|++|+|||..+..++..+.+        |.+.+.|+.+-+.          .++
T Consensus       196 ~skgVYClQYD------D~kiVSGlrDnTikiWD~n~~~c~~~L~G--------HtGSVLCLqyd~r----------vii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYD------DEKIVSGLRDNTIKIWDKNSLECLKILTG--------HTGSVLCLQYDER----------VIV  251 (499)
T ss_pred             cCCceEEEEec------chhhhcccccCceEEeccccHHHHHhhhc--------CCCcEEeeeccce----------EEE
Confidence            44567766642      23599999999999999999999988887        4588999887443          899


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPP  204 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~  204 (341)
                      +|+.|.++++||++...        .++.+ ..|...|..+.|+  ..++++++.|.++.+||+.....   .+.+.+  
T Consensus       252 sGSSDsTvrvWDv~tge--------~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG--  318 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGE--------PLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG--  318 (499)
T ss_pred             ecCCCceEEEEeccCCc--------hhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh--
Confidence            99999999999998665        33333 2466788899986  57999999999999999976432   223334  


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                             |...|+.+.|    +.+++++++.|++|++|++.+.+. ++++.+|...|-|+.+  .++++++|+.|.+|++
T Consensus       319 -------HrAaVNvVdf----d~kyIVsASgDRTikvW~~st~ef-vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  319 -------HRAAVNVVDF----DDKYIVSASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL  384 (499)
T ss_pred             -------hhhheeeecc----ccceEEEecCCceEEEEeccceee-ehhhhcccccceehhc--cCeEEEecCCCceEEE
Confidence                   3466899988    677999999999999999999876 9999999999998887  6889999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ||+..|++++.+++| +.-|.++.|  +.+.+++|+.||+|++||+.++.
T Consensus       385 wdi~~G~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  385 WDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             EeccccHHHHHHhch-HHhhhheee--cCceeeeccccceEEEEeccccc
Confidence            999999999999999 999999999  56789999999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-30  Score=193.69  Aligned_cols=248  Identities=19%  Similarity=0.252  Sum_probs=209.8

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .+.+|+++++-+.++.++.    +|.+++.|.+..||-..+|+.+.++.+|        .+.+-|+..-....       
T Consensus         5 ~l~GHERplTqiKyN~eGD----LlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW~~Did~~s~-------   65 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD----LLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVWCCDIDWDSK-------   65 (327)
T ss_pred             ccccCccccceEEecCCCc----EEEEecCCCCceEEEecCCceeeeecCC--------CceEEEEEecCCcc-------
Confidence            3668999999999887776    9999999999999999999999999985        47787777765555       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-----CCeEEEEECCC-----
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK-----  193 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~-----  193 (341)
                       .+++++.|.++++||+..++        .+..|.  .+.+|..+.|+++|++++.+..     .+.|.++|++.     
T Consensus        66 -~liTGSAD~t~kLWDv~tGk--------~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   66 -HLITGSADQTAKLWDVETGK--------QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             -eeeeccccceeEEEEcCCCc--------EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence             99999999999999998766        566666  4678999999999999887643     46799999983     


Q ss_pred             --CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc
Q 019405          194 --CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF  271 (341)
Q Consensus       194 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  271 (341)
                        .++...+..+.         ..++.+-|  .|-+..|++|..||.|.+||.++++..+...+.|...|+.++++|+..
T Consensus       135 ~s~ep~~kI~t~~---------skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T  203 (327)
T KOG0643|consen  135 DSEEPYLKIPTPD---------SKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT  203 (327)
T ss_pred             cccCceEEecCCc---------cceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc
Confidence              34455555543         45888899  899999999999999999999998877888888999999999999999


Q ss_pred             eEEEEeCCCCEEEEECCCCeEEeEE-------------------------------------------------------
Q 019405          272 NIYIGNGSGDLASVDIRTGKLLGCF-------------------------------------------------------  296 (341)
Q Consensus       272 ~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------------------------------------  296 (341)
                      ++++++.|.+-++||.++.+.+.++                                                       
T Consensus       204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            9999999999999998765444332                                                       


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      ++| -++|++++|||+|+..++|+.||.||+......
T Consensus       284 kGH-FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  284 KGH-FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             ccc-ccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence            344 789999999999999999999999999877653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.1e-32  Score=219.52  Aligned_cols=258  Identities=14%  Similarity=0.195  Sum_probs=210.9

Q ss_pred             ceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeecccc
Q 019405           40 KVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (341)
                      +++..|.+|...|.++.|.+ ..+    +|++++.|+.|+||++.. +++++++.+|        ..++..+.|.+... 
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~h----LlLS~gmD~~vklW~vy~~~~~lrtf~gH--------~k~Vrd~~~s~~g~-  271 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGH----LLLSGGMDGLVKLWNVYDDRRCLRTFKGH--------RKPVRDASFNNCGT-  271 (503)
T ss_pred             hheeeccCCccccchhhhccceee----EEEecCCCceEEEEEEecCcceehhhhcc--------hhhhhhhhccccCC-
Confidence            45678999999999999887 555    899999999999999876 8899999885        46677777766666 


Q ss_pred             ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce
Q 019405          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~  196 (341)
                             .+++++.|+.+++||++.+.        .+..  ...+..+.|+.|+|++ +.+++|+.|+.|+.||+++++.
T Consensus       272 -------~fLS~sfD~~lKlwDtETG~--------~~~~--f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv  334 (503)
T KOG0282|consen  272 -------SFLSASFDRFLKLWDTETGQ--------VLSR--FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV  334 (503)
T ss_pred             -------eeeeeecceeeeeeccccce--------EEEE--EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence                   99999999999999997655        2333  3456788999999998 8899999999999999999998


Q ss_pred             eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEE
Q 019405          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ++++..+-         +.|..+.|  -+++.++++.+.|++++||+.+..-. ++ ....+.....++..+|++.++++
T Consensus       335 vqeYd~hL---------g~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  335 VQEYDRHL---------GAILDITF--VDEGRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             HHHHHhhh---------hheeeeEE--ccCCceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCCCCeehh
Confidence            88877654         66999999  68999999999999999999987542 32 22223345678999999999999


Q ss_pred             EeCCCCEEEEECCCC---eEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          276 GNGSGDLASVDIRTG---KLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~dg~i~iwd~~~~---~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      -+.|+.|.+|.+...   .....|.+|. .+--..+.|||||.+|++|+.||.+.+||.++-+++..+
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL  470 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence            999999999987543   2234566662 234556899999999999999999999999987766543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-29  Score=192.97  Aligned_cols=258  Identities=16%  Similarity=0.201  Sum_probs=205.0

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++...|++....+.++.|+.++.    +|++++.|.+++|||..+++.++++....        -.+-...+.....   
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~----~litss~dDsl~LYd~~~g~~~~ti~skk--------yG~~~~~Fth~~~---   69 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGL----LLITSSEDDSLRLYDSLSGKQVKTINSKK--------YGVDLACFTHHSN---   69 (311)
T ss_pred             ccccccccCCCceeEEEecCCCC----EEEEecCCCeEEEEEcCCCceeeEeeccc--------ccccEEEEecCCc---
Confidence            34455767778888888887776    89999999999999999999999887631        1222333333333   


Q ss_pred             ccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405          120 SSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (341)
Q Consensus       120 ~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  197 (341)
                           .++.++.  |.+|+..++...+        .+|.|. .|...|..++.+|-+..+++++.|++|++||++..++.
T Consensus        70 -----~~i~sStk~d~tIryLsl~dNk--------ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   70 -----TVIHSSTKEDDTIRYLSLHDNK--------YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             -----eEEEccCCCCCceEEEEeecCc--------eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence                 5666665  7788888886444        677776 57899999999999999999999999999999976655


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC-CceeEEEEec---CCCeEEEEEcCCCceE
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNI  273 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~l  273 (341)
                      ..+....           -..++|  +|+|-++|++.....|++||++.. +.|..++...   ....+.+.|||+|++|
T Consensus       136 g~l~~~~-----------~pi~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~i  202 (311)
T KOG1446|consen  136 GLLNLSG-----------RPIAAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSI  202 (311)
T ss_pred             eEEecCC-----------CcceeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEE
Confidence            4444322           234688  999999999988889999999975 5566666544   5678999999999999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEEeccccCc--eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+...+.+++.|.-+|..+.++..+....  -....|+||++++++|+.||+|.+|++++|+.+..+
T Consensus       203 LlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  203 LLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             EEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence            999999999999999999999988762211  246789999999999999999999999999988764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-30  Score=218.95  Aligned_cols=292  Identities=16%  Similarity=0.184  Sum_probs=233.8

Q ss_pred             ecCCCCCceeeeecCCCCeEEEEEecCccCc-cce----eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405            8 ECPGCPPLRALTFDSLGLIKVIEARGEHGGV-PKV----VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (341)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~-~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~   82 (341)
                      ++++.+ ..++. -.+..+..+.+... .+. ++.    ...+++|...|..+++|.+..    .+++| ..+.|+||+.
T Consensus       330 ~~~~~~-~~lv~-l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~----~~~Sg-a~~SikiWn~  401 (888)
T KOG0306|consen  330 PSGGTE-NTLVL-LANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI----LLASG-AGESIKIWNR  401 (888)
T ss_pred             ecCCcc-eeEEE-eecCceEEEEeccC-CCCCccccccceeeeccchhheeEEEeecCce----eeeec-CCCcEEEEEc
Confidence            444444 22333 45666766666652 111 111    135678999999999998877    44444 4889999999


Q ss_pred             CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (341)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~  162 (341)
                      .+.++++++..          +.+.+..+.+.+.        .++.|...|.+.++++.....        +...+ .|.
T Consensus       402 ~t~kciRTi~~----------~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l--------~Eti~-AHd  454 (888)
T KOG0306|consen  402 DTLKCIRTITC----------GYILASKFVPGDR--------YIVLGTKNGELQVFDLASASL--------VETIR-AHD  454 (888)
T ss_pred             cCcceeEEecc----------ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhhh--------hhhhh-ccc
Confidence            99999999987          6777888888777        999999999999999976552        22333 578


Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  237 (341)
                      +.|+.++.+||+..+++|+.|.+|++||..-     +.....+.-.....+.+  +..|.|+.+  +||+++|+++--|+
T Consensus       455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~--Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSV--SPDGKLLAVSLLDN  530 (888)
T ss_pred             cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEE--cCCCcEEEEEeccC
Confidence            8999999999999999999999999999752     11111122222222222  356999999  99999999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      ++++|-+.+.+- ..++.+|.-||.|+..+||++++++|+.|..|+||-++-|.+-..+-+| .+.|.++.|.|....+.
T Consensus       531 TVkVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FF  608 (888)
T KOG0306|consen  531 TVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFF  608 (888)
T ss_pred             eEEEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEE
Confidence            999999998764 7788999999999999999999999999999999999999999999998 99999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeeec
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ++|.|+.|+-||-..-+++++++
T Consensus       609 t~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             EecCcceEEeechhhhhhheeec
Confidence            99999999999999888888875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-30  Score=223.21  Aligned_cols=280  Identities=15%  Similarity=0.145  Sum_probs=227.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.++++--.|.|.+|+..-.     .++.+|.+|+++|..+.|-+    .++++++|+.|-+|+||+..+.+++.++.+|
T Consensus        22 PwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~FH~----~qplFVSGGDDykIkVWnYk~rrclftL~GH   92 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVDFHP----TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH   92 (1202)
T ss_pred             CEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceeeecC----CCCeEEecCCccEEEEEecccceehhhhccc
Confidence            45788889999999998876     78899999999999888654    4559999999999999999999999999884


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                              .+.+..+.+.....        .+++++.|-+|+||+....+        .|.+.. .|...|.|..|+|..
T Consensus        93 --------lDYVRt~~FHheyP--------WIlSASDDQTIrIWNwqsr~--------~iavlt-GHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   93 --------LDYVRTVFFHHEYP--------WILSASDDQTIRIWNWQSRK--------CIAVLT-GHNHYVMCAQFHPTE  147 (1202)
T ss_pred             --------cceeEEeeccCCCc--------eEEEccCCCeEEEEeccCCc--------eEEEEe-cCceEEEeeccCCcc
Confidence                    46666666655555        99999999999999987544        444443 467789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCC--------CCC------------CccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      ..++++|.|.+|++||+...+.....+.        ...            ...-.+|...|+-++|  +|.-.++++|+
T Consensus       148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf--hpTlpliVSG~  225 (1202)
T KOG0292|consen  148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF--HPTLPLIVSGA  225 (1202)
T ss_pred             ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe--cCCcceEEecC
Confidence            9999999999999999964322111111        000            0122346677999999  78889999999


Q ss_pred             CCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          235 NDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       235 ~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .|+.|++|.+...+. .+-+..+|...|.++-|+|...++++.+.|++|++||+...+.+++|+-. .+..+.++-+|..
T Consensus       226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~l  304 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPEL  304 (1202)
T ss_pred             CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCc
Confidence            999999999886432 35667889999999999999999999999999999999999999999876 7899999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCC
Q 019405          314 PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       314 ~~l~s~~~dg~v~iwd~~~  332 (341)
                      +++++| .|+-+.+|.++.
T Consensus       305 NLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  305 NLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             ceeeee-cCCceEEEEEcc
Confidence            988877 566677777763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=5.9e-30  Score=191.22  Aligned_cols=255  Identities=12%  Similarity=0.098  Sum_probs=213.4

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .+++|...+..++|+.++.    .|++|+.|+++++|+++..+.......      ..|.+.+..++|.+.+..      
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~----~lasgs~dktv~v~n~e~~r~~~~~~~------~gh~~svdql~w~~~~~d------   78 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT----KLASGSFDKTVSVWNLERDRFRKELVY------RGHTDSVDQLCWDPKHPD------   78 (313)
T ss_pred             HhhhhhhcceEEEEcccCc----eeeecccCCceEEEEecchhhhhhhcc------cCCCcchhhheeCCCCCc------
Confidence            4567888999999998888    899999999999999987755544433      246678888999887765      


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                       .+++++.|.++++|++...+        .+...  ...+.=.-+.|+|+|++++.++.|..|.+.|.++.+.....+..
T Consensus        79 -~~atas~dk~ir~wd~r~~k--------~~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~  147 (313)
T KOG1407|consen   79 -LFATASGDKTIRIWDIRSGK--------CTARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK  147 (313)
T ss_pred             -ceEEecCCceEEEEEeccCc--------EEEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence             89999999999999997655        33322  33444556789999999999999999999999987766544432


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                                ..+..++|  +.++++++.....|+|.|......+ |+..++.|.....|+.|+|+|+++|+|+.|..+.
T Consensus       148 ----------~e~ne~~w--~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA~GsADAlvS  214 (313)
T KOG1407|consen  148 ----------FEVNEISW--NNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFATGSADALVS  214 (313)
T ss_pred             ----------ceeeeeee--cCCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEeeccccceee
Confidence                      33677888  5566677766778999999988755 6999999999999999999999999999999999


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +||++..-+++.+..+ .-+|..+.|+.+|++||++|+|..|-|=++++|..+.++
T Consensus       215 LWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  215 LWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             ccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence            9999998888888887 889999999999999999999999999999999888775

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.5e-31  Score=208.41  Aligned_cols=271  Identities=13%  Similarity=0.142  Sum_probs=212.6

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+.+|+-||.|++|++...     ....++..|.+.|.-+++.. .     .+++++.|.+|+.|.++ +..+.++.+. 
T Consensus        81 ~~aSGs~DG~VkiWnlsqR-----~~~~~f~AH~G~V~Gi~v~~-~-----~~~tvgdDKtvK~wk~~-~~p~~tilg~-  147 (433)
T KOG0268|consen   81 TVASGSCDGEVKIWNLSQR-----ECIRTFKAHEGLVRGICVTQ-T-----SFFTVGDDKTVKQWKID-GPPLHTILGK-  147 (433)
T ss_pred             hhhccccCceEEEEehhhh-----hhhheeecccCceeeEEecc-c-----ceEEecCCcceeeeecc-CCcceeeecc-
Confidence            4778999999999999987     56668889999999888776 2     48888899999999985 4555555542 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-  174 (341)
                              ..+..+.......        .++++++  .+.|||.....        ++..+... -..|.++.|+|.. 
T Consensus       148 --------s~~~gIdh~~~~~--------~FaTcGe--~i~IWD~~R~~--------Pv~smswG-~Dti~svkfNpvET  200 (433)
T KOG0268|consen  148 --------SVYLGIDHHRKNS--------VFATCGE--QIDIWDEQRDN--------PVSSMSWG-ADSISSVKFNPVET  200 (433)
T ss_pred             --------ccccccccccccc--------cccccCc--eeeecccccCC--------ccceeecC-CCceeEEecCCCcc
Confidence                    2233333322222        5666553  68899976433        55544432 2468899999965 


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ..|++|+.|+.|.+||++++.++..+...          -.-+.++|  +|+...++++++|..++.||++....|+...
T Consensus       201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~Isw--nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICW--NPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             hheeeeccCCceEEEecccCCccceeeee----------ccccceec--Cccccceeeccccccceehhhhhhcccchhh
Confidence            56778889999999999999887765432          22567899  7888889999999999999999988899999


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .+|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+.......|.++.|+.|.+++++||.|+.|++|.....+
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            99999999999999999999999999999999988765544433224579999999999999999999999999987655


Q ss_pred             eeee
Q 019405          335 LLSA  338 (341)
Q Consensus       335 ~~~~  338 (341)
                      .+..
T Consensus       349 klgv  352 (433)
T KOG0268|consen  349 KLGV  352 (433)
T ss_pred             hcCC
Confidence            5443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=7.3e-32  Score=207.74  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=213.9

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      ...+.|..||||+.    ||++|+.||-|.+||..+|+..+.++.-....+.-.++++.|+.+.....        .+++
T Consensus       213 KSh~EcA~FSPDgq----yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------MlAs  280 (508)
T KOG0275|consen  213 KSHVECARFSPDGQ----YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------MLAS  280 (508)
T ss_pred             ccchhheeeCCCCc----eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------Hhhc
Confidence            34455677776666    99999999999999999999888777655555666789999999877766        9999


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  208 (341)
                      |+.||.+++|.+..+.        .++.|+-.|...|+|+.|+.|+..+++++.|.++++.-+++|+.+.++.+|.    
T Consensus       281 GsqDGkIKvWri~tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs----  348 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS----  348 (508)
T ss_pred             cCcCCcEEEEEEecch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc----
Confidence            9999999999998665        7888998899999999999999999999999999999999999999999875    


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE----------------------------------
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF----------------------------------  254 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------------------------------  254 (341)
                           ..|+...|  .++|..+++++.||+|++|+..+.++ +.++                                  
T Consensus       349 -----Syvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  349 -----SYVNEATF--TDDGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             -----ccccceEE--cCCCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence                 77999999  89999999999999999999876432 1111                                  


Q ss_pred             ----------Ee---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          255 ----------DF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       255 ----------~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                                ..   ..+...+.+.+|.|.++++.+.|+.++.|...+|++..++..| +..+..++-+|..+.||+=+.
T Consensus       421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHPHqNllAsYsE  499 (508)
T KOG0275|consen  421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHPHQNLLASYSE  499 (508)
T ss_pred             eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCcccchhhhhcc
Confidence                      10   1123456678999999999999999999999999999999998 888999999999999999999


Q ss_pred             CCcEEEEE
Q 019405          322 DSYLRFWD  329 (341)
Q Consensus       322 dg~v~iwd  329 (341)
                      ||.+++|.
T Consensus       500 DgllKLWk  507 (508)
T KOG0275|consen  500 DGLLKLWK  507 (508)
T ss_pred             cchhhhcC
Confidence            99999995

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=5.9e-30  Score=200.60  Aligned_cols=250  Identities=14%  Similarity=0.192  Sum_probs=194.1

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      ++++++|++||.++|||. .|+....+.+|        .+++..+.+...+.     ..+.|++++.|.++.+|.++...
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Gh--------t~~ik~v~~v~~n~-----~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGH--------TGPIKSVAWVIKNS-----SSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecC--------CcceeeeEEEecCC-----ccceEEEecCCceEEEEEecCch
Confidence            347999999999999998 58888888874        57787777776655     23379999999999999987654


Q ss_pred             cccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC--ceeeecCC--------------CCCCcc
Q 019405          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKP--------------PPKNSL  208 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~--------------~~~~~~  208 (341)
                      ..    ...+..-. .|...|.+++..+++..+++|+.|..|++|+..+.  ..+.....              ...-..
T Consensus       181 ~~----~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  181 NK----VKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             hh----hhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            32    11111111 67889999999999999999999999999993321  00000000              001112


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      -.+|..+|.++.|  ++ ...+++++.|.+|+.||+.++.. ...+. ...++.++.++|..++|++|+.|..|++||.+
T Consensus       256 l~GHt~~Vs~V~w--~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  256 LEGHTEPVSSVVW--SD-ATVIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             ecccccceeeEEE--cC-CCceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeecCCC
Confidence            3457788999999  44 77899999999999999999775 55555 34689999999999999999999999999999


Q ss_pred             CCe---EEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc-eeeee
Q 019405          289 TGK---LLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ-LLSAV  339 (341)
Q Consensus       289 ~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~-~~~~~  339 (341)
                      ++.   ..++|.+| .+.|.++.|+|... +|++++.|+++++||+++.+ ++..|
T Consensus       331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI  385 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI  385 (423)
T ss_pred             CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence            763   46778898 88999999999776 78999999999999999876 55544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=197.98  Aligned_cols=253  Identities=15%  Similarity=0.202  Sum_probs=204.7

Q ss_pred             eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      +..|..|..++.+++..|+..    +++||+.|..-.||+..++....++.+        |.+.++++.|.....     
T Consensus        57 ~~tF~~H~~svFavsl~P~~~----l~aTGGgDD~AflW~~~~ge~~~eltg--------HKDSVt~~~Fshdgt-----  119 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNN----LVATGGGDDLAFLWDISTGEFAGELTG--------HKDSVTCCSFSHDGT-----  119 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCc----eEEecCCCceEEEEEccCCcceeEecC--------CCCceEEEEEccCce-----
Confidence            457889999999888777444    899999999999999999998777776        568899999877777     


Q ss_pred             ccceeEEEcccceeEEEEeeecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                         +|++|..+|.+.||.+.....          .|.+ .....+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+
T Consensus       120 ---lLATGdmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~  186 (399)
T KOG0296|consen  120 ---LLATGDMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM  186 (399)
T ss_pred             ---EEEecCCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe
Confidence               999999999999999865441          2222 24567889999999999999999999999999987777777


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------------------------
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------------------  256 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------  256 (341)
                      .+|.         .++++=.|  .|+|++++++..||+|++||..+++ |+..+..                        
T Consensus       187 ~Gh~---------~~ct~G~f--~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  187 SGHN---------SPCTCGEF--IPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             cCCC---------CCcccccc--cCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCC
Confidence            7754         55888889  7899999999999999999999865 3444431                        


Q ss_pred             ---------------------------cCCCeEEEEE---cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          257 ---------------------------RETPIKAVAE---EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       257 ---------------------------~~~~v~~~~~---~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                                                 ++..+.++.+   +..-.+.|+|+.||+|.|||+...++.+.+. | ..+|..
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~  332 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTK  332 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEE
Confidence                                       0011122222   2233577899999999999998877776665 3 788999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|-+ ..+|++++.||.|+.||.++|+++.++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence            99998 789999999999999999999998875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-30  Score=221.44  Aligned_cols=250  Identities=15%  Similarity=0.193  Sum_probs=212.9

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ....+..++    .+|..++++++-..|.|++||.+-+.++..+..        |++++.++.+.+...        .++
T Consensus         8 kSsRvKgls----FHP~rPwILtslHsG~IQlWDYRM~tli~rFde--------HdGpVRgv~FH~~qp--------lFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLS----FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--------HDGPVRGVDFHPTQP--------LFV   67 (1202)
T ss_pred             cccccccee----cCCCCCEEEEeecCceeeeehhhhhhHHhhhhc--------cCCccceeeecCCCC--------eEE
Confidence            344444444    456667999999999999999999999988887        679999999988887        999


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      +|+.|-.|++|+.....          .++. ..|-..|..+.|++.-.+|+++|.|.+|+||+..+++++..+.+|.  
T Consensus        68 SGGDDykIkVWnYk~rr----------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn--  135 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRR----------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN--  135 (1202)
T ss_pred             ecCCccEEEEEecccce----------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc--
Confidence            99999999999976433          1222 2455679999999999999999999999999999999999998864  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc----------------------------eeEEEEecC
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----------------------------PVMSFDFRE  258 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------~~~~~~~~~  258 (341)
                             ..|.|..|  +|...++++++-|.+||+||+...+.                            ..+.+.+|.
T Consensus       136 -------HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD  206 (1202)
T KOG0292|consen  136 -------HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD  206 (1202)
T ss_pred             -------eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence                   78999999  78889999999999999999864110                            124567899


Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      ..|+-++|+|.-.+|++|+.|..|++|....-+  .+.+..+| .+.|.++-|+|...++++.|.|++|++||+...+.+
T Consensus       207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence            999999999999999999999999999886443  36677888 899999999999999999999999999999999888


Q ss_pred             eee
Q 019405          337 SAV  339 (341)
Q Consensus       337 ~~~  339 (341)
                      +++
T Consensus       286 ~tf  288 (1202)
T KOG0292|consen  286 QTF  288 (1202)
T ss_pred             eee
Confidence            876

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.5e-29  Score=208.63  Aligned_cols=264  Identities=16%  Similarity=0.157  Sum_probs=213.4

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  101 (341)
                      ..-.+.+|+....     ++..-..-+...++++.++.++.    +|++|..+|.|.|||..+.+.+..+..+       
T Consensus       195 lg~~vylW~~~s~-----~v~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~~~~-------  258 (484)
T KOG0305|consen  195 LGQSVYLWSASSG-----SVTELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTLRGS-------  258 (484)
T ss_pred             ecceEEEEecCCC-----ceEEeEecCCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccccCC-------
Confidence            3334566766665     22222222378899999887777    8999999999999999988888888772       


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      |...+-+++|.  ..        .+.+|+.++.+.++++......       +.. ...|...|..++|++|++++|+|+
T Consensus       259 h~~rvg~laW~--~~--------~lssGsr~~~I~~~dvR~~~~~-------~~~-~~~H~qeVCgLkws~d~~~lASGg  320 (484)
T KOG0305|consen  259 HASRVGSLAWN--SS--------VLSSGSRDGKILNHDVRISQHV-------VST-LQGHRQEVCGLKWSPDGNQLASGG  320 (484)
T ss_pred             cCceeEEEecc--Cc--------eEEEecCCCcEEEEEEecchhh-------hhh-hhcccceeeeeEECCCCCeeccCC
Confidence            45777777775  22        8999999999999999866532       121 234788999999999999999999


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCC
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRET  259 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~  259 (341)
                      .|+.+.|||....++...+..|.         ..|.+++|+| -...+||+|+  .|+.|++||..+++. +..... ..
T Consensus       321 nDN~~~Iwd~~~~~p~~~~~~H~---------aAVKA~awcP-~q~~lLAsGGGs~D~~i~fwn~~~g~~-i~~vdt-gs  388 (484)
T KOG0305|consen  321 NDNVVFIWDGLSPEPKFTFTEHT---------AAVKALAWCP-WQSGLLATGGGSADRCIKFWNTNTGAR-IDSVDT-GS  388 (484)
T ss_pred             CccceEeccCCCccccEEEeccc---------eeeeEeeeCC-CccCceEEcCCCcccEEEEEEcCCCcE-eccccc-CC
Confidence            99999999998777777777765         6799999974 3556888854  699999999998775 666553 46


Q ss_pred             CeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          260 PIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .|.++.|++..+.|++  |..++.|.||+..+.+++..+.+| ...|..++++|||..+++|+.|.++++|++-.
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            8999999999876665  446788999999999999999999 99999999999999999999999999999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.7e-30  Score=191.98  Aligned_cols=270  Identities=16%  Similarity=0.189  Sum_probs=217.1

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +++++.||.--   +....+|.|  +.+|.+|.+.|-..+...+..    +-|+++.|=+-+|||.-+|..+..+..   
T Consensus        32 lisa~kd~~pm---lr~g~tgdw--igtfeghkgavw~~~l~~na~----~aasaaadftakvw~a~tgdelhsf~h---   99 (334)
T KOG0278|consen   32 LISASKDGKPM---LRNGDTGDW--IGTFEGHKGAVWSATLNKNAT----RAASAAADFTAKVWDAVTGDELHSFEH---   99 (334)
T ss_pred             EEEeccCCCch---hccCCCCCc--EEeeeccCcceeeeecCchhh----hhhhhcccchhhhhhhhhhhhhhhhhh---
Confidence            45556665433   233446755  668999999987666555444    688899999999999999999988876   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                             +.|+..+.|..+.+       .|++++.+..++|++++...       .+...+. .|.+.|..+.|....+.
T Consensus       100 -------khivk~~af~~ds~-------~lltgg~ekllrvfdln~p~-------App~E~~-ghtg~Ir~v~wc~eD~~  157 (334)
T KOG0278|consen  100 -------KHIVKAVAFSQDSN-------YLLTGGQEKLLRVFDLNRPK-------APPKEIS-GHTGGIRTVLWCHEDKC  157 (334)
T ss_pred             -------hheeeeEEecccch-------hhhccchHHHhhhhhccCCC-------CCchhhc-CCCCcceeEEEeccCce
Confidence                   66777777776664       99999999999999987543       2333333 35678889999888889


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      |++.+.|++|++||.+++..+..+...          ..|+++.+  +++|.+|.++ ..+.|++||..+... ++.++-
T Consensus       158 iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEv--s~dG~ilTia-~gssV~Fwdaksf~~-lKs~k~  223 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEV--SQDGRILTIA-YGSSVKFWDAKSFGL-LKSYKM  223 (334)
T ss_pred             EEeeccCCceEEEEeccCcEEEEEecC----------CCCcceee--ccCCCEEEEe-cCceeEEeccccccc-eeeccC
Confidence            999999999999999999999887754          44888999  7888776665 567899999998653 555543


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                       ...|.+..++|+...+++|+.|..++.||..+++.+..+ ++| .++|.++.|+|+|...++||.||+|++|.+..++.
T Consensus       224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             346888999999999999999999999999999999886 777 89999999999999999999999999999887664


Q ss_pred             e
Q 019405          336 L  336 (341)
Q Consensus       336 ~  336 (341)
                      .
T Consensus       302 ~  302 (334)
T KOG0278|consen  302 Y  302 (334)
T ss_pred             h
Confidence            3

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.8e-29  Score=214.71  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=193.9

Q ss_pred             eecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh---------------------------eeec-
Q 019405           43 ERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV---------------------------AISN-   93 (341)
Q Consensus        43 ~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------------------~~~~-   93 (341)
                      +.+. +|.++|.++.||+|++    |||+|+.|+.|+||.+...+...                           .... 
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGK----yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGK----YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eccccccCCcEEEEEeCCCCc----eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            4455 7999999999999888    99999999999999886511000                           0000 


Q ss_pred             -------cC-------CC----------CCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc
Q 019405           94 -------AG-------DS----------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES  149 (341)
Q Consensus        94 -------~~-------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~  149 (341)
                             ..       ..          .+.+|.+.|..+.|..         ++.|++++.|.++++|.+...      
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---------n~fLLSSSMDKTVRLWh~~~~------  400 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---------NNFLLSSSMDKTVRLWHPGRK------  400 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheeccccc---------CCeeEeccccccEEeecCCCc------
Confidence                   00       00          0123455565665532         238999999999999998743      


Q ss_pred             CCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          150 SCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       150 ~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                        ..+++|.  |...|+|++|+| |.+++++|+.|+.|+||++...+...-...+          .-|++++|  .|+|+
T Consensus       401 --~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy--~PdGk  464 (712)
T KOG0283|consen  401 --ECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCY--SPDGK  464 (712)
T ss_pred             --ceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh----------hhheeEEe--ccCCc
Confidence              3778875  678999999999 7899999999999999999877665444333          34999999  89999


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEe--c------CCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDF--R------ETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~------~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      ..++|+.+|.+++|+....+. .....-  |      ...|+.+.|.|.. ..+++.+.|..|+|||.++.+++..|+++
T Consensus       465 ~avIGt~~G~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~  543 (712)
T KOG0283|consen  465 GAVIGTFNGYCRFYDTEGLKL-VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF  543 (712)
T ss_pred             eEEEEEeccEEEEEEccCCeE-EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc
Confidence            999999999999999887442 322221  1      2379999999854 35778889999999999999999999976


Q ss_pred             ccC-ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          300 CSG-SIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       300 ~~~-~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +.. .=....|+.||++|+++++|..|++|++..
T Consensus       544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            433 335678999999999999999999999854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-29  Score=187.86  Aligned_cols=248  Identities=17%  Similarity=0.206  Sum_probs=198.3

Q ss_pred             CceeEEEeccCCCCCceEEEEc-------cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           51 SNCVLAASIDDSQNDPLLAVAR-------KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .-+.+.|||-...   +||++.       ..|++.|.++...+-+.+....      .-.+..-.++|.+...+      
T Consensus        10 ~GysvqfSPf~~n---rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~------d~~D~LfdV~Wse~~e~------   74 (311)
T KOG0277|consen   10 HGYSVQFSPFVEN---RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY------DTEDGLFDVAWSENHEN------   74 (311)
T ss_pred             ccceeEecccccc---hhheeehhhcccccCceEEEEecCCCCCeEEEEee------ecccceeEeeecCCCcc------
Confidence            3456677776553   244432       2689999999766666655543      12367778888777665      


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                       .+++++.||++++|++..       ..++|+.|. +|..+|.++.|++. ...+++++.|++|++|+...++.+.++.+
T Consensus        75 -~~~~a~GDGSLrl~d~~~-------~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g  145 (311)
T KOG0277|consen   75 -QVIAASGDGSLRLFDLTM-------PSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG  145 (311)
T ss_pred             -eEEEEecCceEEEeccCC-------CCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence             899999999999999643       334788887 57889999999984 56677889999999999998888888887


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGD  281 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~  281 (341)
                      +.         ..|....|. +...+++++++.|+++++||++...+ ...+..|...|.++.|+. +...|++|+.|+.
T Consensus       146 h~---------~~Iy~a~~s-p~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  146 HN---------SCIYQAAFS-PHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             Cc---------cEEEEEecC-CCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCce
Confidence            54         779999995 33678999999999999999997655 444888999999999987 5578899999999


Q ss_pred             EEEEECCCC-eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405          282 LASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       282 i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~  334 (341)
                      |+.||+++- .++..+.+| .-.|+.+.|||... +|++++.|-++||||...+.
T Consensus       215 vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  215 VRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             EEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence            999999875 468888888 89999999999654 89999999999999988544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.3e-28  Score=181.91  Aligned_cols=273  Identities=13%  Similarity=0.111  Sum_probs=222.1

Q ss_pred             CCCCCceeeeecCCCCeEEEEEecCccCcccee--eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (341)
Q Consensus        10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   87 (341)
                      -.|..-++.+++.|+++++|++...     +..  ..+.+|...|.-+++.+...+   +|++++.|.+|++||...+++
T Consensus        28 wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d---~~atas~dk~ir~wd~r~~k~   99 (313)
T KOG1407|consen   28 WNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPD---LFATASGDKTIRIWDIRSGKC   99 (313)
T ss_pred             EcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCc---ceEEecCCceEEEEEeccCcE
Confidence            3456678899999999999999986     222  245668888887777765553   699999999999999999999


Q ss_pred             hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (341)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~  167 (341)
                      ...+...         ..-..+.|.+.+.        +++++..|..+.+.+....+        .+....  ..-.+..
T Consensus       100 ~~~i~~~---------~eni~i~wsp~g~--------~~~~~~kdD~it~id~r~~~--------~~~~~~--~~~e~ne  152 (313)
T KOG1407|consen  100 TARIETK---------GENINITWSPDGE--------YIAVGNKDDRITFIDARTYK--------IVNEEQ--FKFEVNE  152 (313)
T ss_pred             EEEeecc---------CcceEEEEcCCCC--------EEEEecCcccEEEEEecccc--------eeehhc--ccceeee
Confidence            8877652         4444567777776        99999999999999876543        111111  2345677


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      +.|+.++.+++.-...|.|.|......+++..++.|.         ....|+.|  +|+|++||+|+.|..+.+||+...
T Consensus       153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~---------snCicI~f--~p~GryfA~GsADAlvSLWD~~EL  221 (313)
T KOG1407|consen  153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP---------SNCICIEF--DPDGRYFATGSADALVSLWDVDEL  221 (313)
T ss_pred             eeecCCCCEEEEecCCceEEEEeccccccccccccCC---------cceEEEEE--CCCCceEeeccccceeeccChhHh
Confidence            8888778887777777899999998888888888865         44788889  999999999999999999999986


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-----
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----  322 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----  322 (341)
                      -+ ++.+..+.-+|+.+.|+.+|++||+|+.|-.|-|=++++|..+..++.  .++-+.++|+|...+||-++.|     
T Consensus       222 iC-~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk~~d~  298 (313)
T KOG1407|consen  222 IC-ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDKDGDS  298 (313)
T ss_pred             hh-heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCCCCcc
Confidence            54 788888999999999999999999999999999999999999998874  7899999999999999988755     


Q ss_pred             ----CcEEEEEcC
Q 019405          323 ----SYLRFWDIK  331 (341)
Q Consensus       323 ----g~v~iwd~~  331 (341)
                          |.|++|-+.
T Consensus       299 ~reag~vKiFG~~  311 (313)
T KOG1407|consen  299 NREAGTVKIFGLS  311 (313)
T ss_pred             ccccceeEEecCC
Confidence                466776544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=6.7e-30  Score=202.34  Aligned_cols=266  Identities=15%  Similarity=0.161  Sum_probs=214.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -++.+++.|..|++|+.....   .....++.+..++++.+.|-.+.+    ++++++.|+.+++|++.+.+...++.+|
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~TLsGH  260 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHTLSGH  260 (459)
T ss_pred             chhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhhhccc
Confidence            456778888889999988761   235567777788899888887777    7999999999999999999999999884


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                              .+.++++.+.....        .+++++.|.+++.|++....        ..+...  ....+..+..+  .
T Consensus       261 --------tdkVt~ak~~~~~~--------~vVsgs~DRtiK~WDl~k~~--------C~kt~l--~~S~cnDI~~~--~  312 (459)
T KOG0288|consen  261 --------TDKVTAAKFKLSHS--------RVVSGSADRTIKLWDLQKAY--------CSKTVL--PGSQCNDIVCS--I  312 (459)
T ss_pred             --------ccceeeehhhcccc--------ceeeccccchhhhhhhhhhh--------eecccc--ccccccceEec--c
Confidence                    57888888876665        79999999999999986532        111111  11223333333  5


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ..+++|-.|++|++||++........+.+          +.|+++..  ++++..|++++.|.++.++|+++.+. .+.+
T Consensus       313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~eI-~~~~  379 (459)
T KOG0288|consen  313 SDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKEI-RQTF  379 (459)
T ss_pred             eeeeecccccceEEEeccCCceeeEeecC----------cceeeEee--ccCCeEEeeecCCCceeeeecccccE-EEEe
Confidence            67888999999999999999988887765          44999999  88999999999999999999998653 5555


Q ss_pred             Eec----CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccC-ceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          255 DFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       255 ~~~----~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      ...    ....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            431    234788999999999999999999999999999999888876333 69999999999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5.5e-28  Score=192.76  Aligned_cols=270  Identities=11%  Similarity=0.117  Sum_probs=225.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -..++|+.|...-+++...+     +++..|.+|...++.+.+.++..    .+++++.|-.|+||............. 
T Consensus       232 ~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kki~~v~~~~~~~----~v~~aSad~~i~vws~~~~s~~~~~~~-  301 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSN-----QILATLKGHTKKITSVKFHKDLD----TVITASADEIIRVWSVPLSSEPTSSRP-  301 (506)
T ss_pred             CcceecCCCCceEEEecchh-----hhhhhccCcceEEEEEEeccchh----heeecCCcceEEeeccccccCcccccc-
Confidence            44778888888888888877     77888999999999999988777    699999999999999977665444443 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDIS  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~  173 (341)
                             |+.++..+...+...        +|++++.|+...+.+++...        .+.+.... ..-.+.+.+|+||
T Consensus       302 -------h~~~V~~ls~h~tge--------YllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  302 -------HEEPVTGLSLHPTGE--------YLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPD  358 (506)
T ss_pred             -------ccccceeeeeccCCc--------EEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCC
Confidence                   678888888887777        99999999999999987544        33333332 2346899999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      |.++.+|..|+.|+|||+..+.....|.+|.         ++|..+.|  +.+|.+|+++++|+.|++||+|..+. .++
T Consensus       359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n-~kt  426 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISF--SENGYWLATAADDGSVKLWDLRKLKN-FKT  426 (506)
T ss_pred             ceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEe--ccCceEEEEEecCCeEEEEEehhhcc-cce
Confidence            9999999999999999999998888888865         77999999  99999999999999999999998664 666


Q ss_pred             EEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECC--CCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          254 FDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       254 ~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +... ..++.++.|.+.|.+|+.++.|=.|++++-.  +..++..+..| .+..+.+.|....++++++|.|..++++.+
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence            6543 2479999999999999999887677777643  55677778777 788999999999999999999999988764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-28  Score=184.85  Aligned_cols=273  Identities=15%  Similarity=0.231  Sum_probs=212.2

Q ss_pred             ceeeeecCCCCeEEEEEecCcc-----Cccce--eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405           15 LRALTFDSLGLIKVIEARGEHG-----GVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   87 (341)
                      |++++|+-...|--+.+...+.     ..+.+  ...+..|.++++++|.+      ++++|+|+.|-+|+|||+...+.
T Consensus         2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs------~~~~aSGssDetI~IYDm~k~~q   75 (362)
T KOG0294|consen    2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS------GPYVASGSSDETIHIYDMRKRKQ   75 (362)
T ss_pred             eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec------ceeEeccCCCCcEEEEeccchhh
Confidence            5778887777776565554421     11222  34567799999999965      45899999999999999999888


Q ss_pred             hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (341)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~  167 (341)
                      +..+..|        .+.++++.+..+....      .|++|+.||.+.+|++..-.        .+.... .|.+.|+.
T Consensus        76 lg~ll~H--------agsitaL~F~~~~S~s------hLlS~sdDG~i~iw~~~~W~--------~~~slK-~H~~~Vt~  132 (362)
T KOG0294|consen   76 LGILLSH--------AGSITALKFYPPLSKS------HLLSGSDDGHIIIWRVGSWE--------LLKSLK-AHKGQVTD  132 (362)
T ss_pred             hcceecc--------ccceEEEEecCCcchh------heeeecCCCcEEEEEcCCeE--------Eeeeec-ccccccce
Confidence            8888764        5889999998776532      89999999999999986443        344444 35667999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ++++|.+++.++.+.|+.++.||+-+|+.-..+.-...          .+.+.|  .|.|.+++.+..+ .|-+|.+.+.
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~----------at~v~w--~~~Gd~F~v~~~~-~i~i~q~d~A  199 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK----------ATLVSW--SPQGDHFVVSGRN-KIDIYQLDNA  199 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc----------ceeeEE--cCCCCEEEEEecc-EEEEEecccH
Confidence            99999999999999999999999998877665543321          344889  8899988888765 6899988874


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcE
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYL  325 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v  325 (341)
                      +. ...+. ....+.++.|- ++..|++|..|+.|.+||..+..+...+.+| ...|-++.+  .|++.+|+|+|.||.|
T Consensus       200 ~v-~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I  275 (362)
T KOG0294|consen  200 SV-FREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI  275 (362)
T ss_pred             hH-hhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence            42 22222 22456677775 4568999999999999999999999999998 999999984  4677899999999999


Q ss_pred             EEEEcCCC
Q 019405          326 RFWDIKTR  333 (341)
Q Consensus       326 ~iwd~~~~  333 (341)
                      ++||++..
T Consensus       276 ~vWd~~~~  283 (362)
T KOG0294|consen  276 KVWDIDME  283 (362)
T ss_pred             EEEEcccc
Confidence            99999875

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=5.4e-29  Score=190.66  Aligned_cols=259  Identities=18%  Similarity=0.252  Sum_probs=202.8

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC----cchheeeccC----CCC--CCCCCCceeeEeeeec
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAG----DSG--AQPEDDGIVGLHLFKR  114 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~  114 (341)
                      +..|..++.+.+|++|++    ++|+|+.|..|+|.|++.-    +......+..    +..  .-.|-+++.++.+.+.
T Consensus       108 lt~HK~~cR~aafs~DG~----lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGS----LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EeecccceeeeeeCCCCc----EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            456889999999998888    8999999999999998721    1111111100    000  0125688889998888


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                      ..        .|++++.|++++++|+......     ...+++.  ...+|.++.|+|.|.+++.|..-.++++||+++-
T Consensus       184 e~--------ILiS~srD~tvKlFDfsK~saK-----rA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  184 ET--------ILISGSRDNTVKLFDFSKTSAK-----RAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             hh--------eEEeccCCCeEEEEecccHHHH-----HHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence            77        9999999999999998654321     1223332  2468999999999999999999999999999998


Q ss_pred             ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecC-CCeEEEEEcCCCce
Q 019405          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRE-TPIKAVAEEPDSFN  272 (341)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~  272 (341)
                      ++........      .|...|+++.+  ++.+++.++++.||.|++||--+.++ +.++. .|. ..|.+..|..++++
T Consensus       249 QcfvsanPd~------qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  249 QCFVSANPDD------QHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKY  319 (430)
T ss_pred             eEeeecCccc------ccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeE
Confidence            7765544222      25678999999  89999999999999999999887665 55553 343 47899999999999


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEEecc------------------------------------------------ccCce
Q 019405          273 IYIGNGSGDLASVDIRTGKLLGCFIGK------------------------------------------------CSGSI  304 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~~~~~~~~~------------------------------------------------~~~~i  304 (341)
                      +++.+.|..+++|.+.+++++..+.+.                                                |++.+
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~  399 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAV  399 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCc
Confidence            999999999999999988877665432                                                57788


Q ss_pred             eEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          305 RSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..+.-+|.++.+++++.|-.+|+|--+
T Consensus       400 R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  400 RWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             eEEEeCCCCCceeeecccceeeeeeec
Confidence            999999999999999999999999644

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.5e-27  Score=204.86  Aligned_cols=262  Identities=11%  Similarity=0.056  Sum_probs=189.1

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-----cCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      +.+.+.+++..    .++++..+.....|+...+..+..+..     .......+|.+.+.++.|.+.+..       .|
T Consensus        23 i~~~~~~~d~~----~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-------~L   91 (493)
T PTZ00421         23 VTPSTALWDCS----NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-------KL   91 (493)
T ss_pred             cccccccCCCC----CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-------EE
Confidence            44445555544    367777777777777644322111110     001123357788999998773332       89


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      ++++.|+++++|++....... .....+..+. .|...|.+++|+|++ ++|++++.|++|++||+++++....+..+. 
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~-~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-  168 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQ-NISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-  168 (493)
T ss_pred             EEEeCCCEEEEEecCCCcccc-ccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-
Confidence            999999999999986532110 0112334443 367889999999975 799999999999999999998887776643 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-eEEEEEcCCCceEEEEe----CCC
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSG  280 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~----~dg  280 (341)
                              ..|.+++|  +|++.+|++++.|++|++||+++++. +..+..|... ...+.|.+++..+++++    .|+
T Consensus       169 --------~~V~sla~--spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        169 --------DQITSLEW--NLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             --------CceEEEEE--ECCCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence                    56999999  88999999999999999999998764 7788888764 44678898877777654    478


Q ss_pred             CEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 019405          281 DLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       281 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~  338 (341)
                      .|++||+++.. ++.....+....+....|++++.+|++++ .|+.|++||+.+++++..
T Consensus       238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            99999998764 34334333245566678999999998887 499999999999887654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.1e-27  Score=178.55  Aligned_cols=248  Identities=12%  Similarity=0.139  Sum_probs=193.8

Q ss_pred             eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      .+++.+|.+.+-.+++.+..   |..||+++.|..||||+...+..   ...+..       .|...+.+++|.+...  
T Consensus         7 ~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~--   74 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGR--   74 (312)
T ss_pred             EEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCc--
Confidence            34566777878777776652   44899999999999999975322   222222       3667788888877766  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc---
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---  195 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~---  195 (341)
                            +|++++.|.++.||.-...      +-..+...+ .|...|.|++|+++|++||+++.|..|-||.+..+.   
T Consensus        75 ------~La~aSFD~t~~Iw~k~~~------efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfe  141 (312)
T KOG0645|consen   75 ------YLASASFDATVVIWKKEDG------EFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFE  141 (312)
T ss_pred             ------EEEEeeccceEEEeecCCC------ceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence                  9999999999999974321      112333333 467889999999999999999999999999987543   


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceE
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                      ....++.|.         .-|..+.|  +|...+|++++.|++|++|+-...  -..++++.+|+..|.+++|+|.|..|
T Consensus       142 c~aVL~~Ht---------qDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl  210 (312)
T KOG0645|consen  142 CIAVLQEHT---------QDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRL  210 (312)
T ss_pred             EEeeecccc---------ccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceE
Confidence            345556654         34888999  788899999999999999987632  23588999999999999999999999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ++++.|++++||-..     ..+...|..+++.+.|.  ...|++++.|+.|++|.-..
T Consensus       211 ~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             EEecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            999999999999765     23333347899999998  55899999999999997654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7e-28  Score=194.80  Aligned_cols=245  Identities=10%  Similarity=0.113  Sum_probs=195.8

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .++......++.+.|..|+.    +||.|+..|.|+|+|..+...+..+..|        ..++....+.+.++.     
T Consensus        62 k~~srFk~~v~s~~fR~DG~----LlaaGD~sG~V~vfD~k~r~iLR~~~ah--------~apv~~~~f~~~d~t-----  124 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGR----LLAAGDESGHVKVFDMKSRVILRQLYAH--------QAPVHVTKFSPQDNT-----  124 (487)
T ss_pred             hhHHhhccceeEEEeecCCe----EEEccCCcCcEEEeccccHHHHHHHhhc--------cCceeEEEecccCCe-----
Confidence            34545567788888887777    8999999999999998776677888775        344444444443332     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCC-ceeeec
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKC-EKIWTA  200 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~-~~~~~~  200 (341)
                        .+++|+.|+.+++|++...         .+...-..|...|.|.+++|. +.++++|+.||.|++||++.. ..+.++
T Consensus       125 --~l~s~sDd~v~k~~d~s~a---------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  125 --MLVSGSDDKVVKYWDLSTA---------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             --EEEecCCCceEEEEEcCCc---------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence              8889999999999998543         343333456788999999985 458999999999999999876 455554


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      .          |..+|..+.+  -|.|.++++++. ..|++||+.++.+.+..+..|...|+|+++..++..|++|+-|+
T Consensus       194 n----------hg~pVe~vl~--lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  194 N----------HGCPVESVLA--LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             c----------CCCceeeEEE--cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence            4          3356899999  578889998864 58999999977765666666999999999999999999999999


Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      .+++||+.+.+.++.+..  .++|.+++.+|+++.++.|-.||.+.+=+.
T Consensus       261 ~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  261 HVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEecccceeeeehh
Confidence            999999999999999986  589999999999999999999998876543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.9e-29  Score=207.11  Aligned_cols=290  Identities=15%  Similarity=0.193  Sum_probs=229.0

Q ss_pred             cCCCCCce-eeeecCCCCeEEEEEecCccCcc-ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-
Q 019405            9 CPGCPPLR-ALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-   85 (341)
Q Consensus         9 ~~~~~~~~-~~~~~~~g~i~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-   85 (341)
                      -+..|.-+ +++++.||.|++|+.....+..- ....++..|..-+.-++.+.++.    -|++++.|-+|++|+...+ 
T Consensus        31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             cccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecccCc
Confidence            35566667 99999999999999887632211 12456777888898888777775    5999999999999999876 


Q ss_pred             -cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe--ecC
Q 019405           86 -DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CAS  162 (341)
Q Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~  162 (341)
                       -++.++..        |.+.+.|+++......       .+++|+-|+.|.+|+++......-.....+..-+.  .+.
T Consensus       107 ~~c~stir~--------H~DYVkcla~~ak~~~-------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen  107 TFCMSTIRT--------HKDYVKCLAYIAKNNE-------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             chhHhhhhc--------ccchheeeeecccCce-------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence             56666766        5688999988433332       89999999999999998653200001111111111  345


Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..|++++.++.+..+++|+..+.+++||.++++.+..+.+|.         ..|.++..  +++|..+++++.||+|++|
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT---------dNVr~ll~--~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT---------DNVRVLLV--NDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc---------cceEEEEE--cCCCCeEeecCCCceEEee
Confidence            679999999999999999999999999999999999999876         55899988  8999999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      |+...++ +.++..|...|+++..+|+=..+++|+.||.|+.=|+++.. +...++.  ..+|..+..+...+-+-.++.
T Consensus       241 dLgqQrC-l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTt  317 (735)
T KOG0308|consen  241 DLGQQRC-LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTT  317 (735)
T ss_pred             eccccce-eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeec
Confidence            9998665 89999999999999999999999999999999999999853 3333332  568888888865555577788


Q ss_pred             CCcEEEEEcC
Q 019405          322 DSYLRFWDIK  331 (341)
Q Consensus       322 dg~v~iwd~~  331 (341)
                      |+.|+-|..+
T Consensus       318 ds~I~rW~~~  327 (735)
T KOG0308|consen  318 DSSIKRWKLE  327 (735)
T ss_pred             cccceecCCc
Confidence            9999999765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.6e-28  Score=199.86  Aligned_cols=288  Identities=15%  Similarity=0.100  Sum_probs=214.5

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeec-cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERW-GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      +..|+++|+-|-.|+.|+......... ....+ ......+.++.|++.+.    .|++.+.....+|+|....+.....
T Consensus       178 ~GaR~~sGs~Dy~v~~wDf~gMdas~~-~fr~l~P~E~h~i~sl~ys~Tg~----~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  178 SGARFVSGSLDYTVKFWDFQGMDASMR-SFRQLQPCETHQINSLQYSVTGD----QILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             CCceeeeccccceEEEEecccccccch-hhhccCcccccccceeeecCCCC----eEEEEecCcceeEEccCCceeeeee
Confidence            447999999999999999987632211 11112 12445677778776544    6777777889999998654444444


Q ss_pred             eccC---CCC-CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CC
Q 019405           92 SNAG---DSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SG  163 (341)
Q Consensus        92 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~  163 (341)
                      ++-.   +.. ..+|...++|-+|.+....       .+++++.||+++||+++..+.       ...++....    .-
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-------~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKE-------EFLTCSYDGTLRIWDVNNTKS-------QLQVIKTKPAGGKRV  318 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCccc-------ceEEecCCCcEEEEecCCchh-------heeEEeeccCCCccc
Confidence            3311   111 1245567778888777665       899999999999999987652       333333221    23


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--eeecC-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      +++.++|++++++||+|..||.|.+|+......  ...+. .|..       ...|+|+.|  +++|++|++-+.|++++
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------g~~Itsi~F--S~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------GQDITSISF--SYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------CCceeEEEe--ccccchhhhccCCCcee
Confidence            578999999999999999999999999754221  11111 1211       135999999  99999999999999999


Q ss_pred             EEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeC------CCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          241 LYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      +||++..++++....+  ...+-+.++|||+.++|++|..      .|.+.+||..+.+.++++.-. ...|..+.|||.
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~Whpk  468 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPK  468 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecch
Confidence            9999998888877665  2345678999999999999864      477999999999999998876 788999999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 019405          313 LPIIASCGLDSYLRFWD  329 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd  329 (341)
                      -+.|..++.||.+++|=
T Consensus       469 LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             hhheeeecCCCceEEEE
Confidence            99999999999998874

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.1e-29  Score=206.41  Aligned_cols=246  Identities=14%  Similarity=0.235  Sum_probs=201.8

Q ss_pred             CCCCCceEEEEccCCeEEEeeCCCCc------chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405           61 DSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (341)
Q Consensus        61 ~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  134 (341)
                      .-|.+++|.+|+.||.|++|+.....      ....++.        |.+.+..+......+        .|++++.|-+
T Consensus        33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--------HsDWVNDiiL~~~~~--------tlIS~SsDtT   96 (735)
T KOG0308|consen   33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--------HSDWVNDIILCGNGK--------TLISASSDTT   96 (735)
T ss_pred             cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--------hHhHHhhHHhhcCCC--------ceEEecCCce
Confidence            34556789999999999999986422      2333443        446666666555555        8999999999


Q ss_pred             eEEEEeeecccccccCCceEEEEEeecCCceEEEEe-cCCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCcc
Q 019405          135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~  211 (341)
                      +++|+......      ..+.... .|...|.|+++ .++...+|+||.|+.|++||+.++  +.+..+.......+..+
T Consensus        97 VK~W~~~~~~~------~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG  169 (735)
T KOG0308|consen   97 VKVWNAHKDNT------FCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG  169 (735)
T ss_pred             EEEeecccCcc------hhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence            99999864420      0111111 35678999999 788899999999999999999987  45555555554555545


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      +...|++++.  ++.+..+++|+..+.+++||.++.++ +..+++|...|..+..+++|..+++++.||+|++||+...+
T Consensus       170 ~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  170 PKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             Cccceeeeec--CCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence            6788999999  88899999999999999999999876 88899999999999999999999999999999999999999


Q ss_pred             EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      ++.++..| ...|+++..+|+-.++.+|+.||.|..=|+++.
T Consensus       247 Cl~T~~vH-~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  247 CLATYIVH-KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeeeEEec-cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999998 778999999999999999999999999999874

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.8e-27  Score=204.17  Aligned_cols=261  Identities=13%  Similarity=0.069  Sum_probs=180.8

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-hheeeccCCCCCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISNAGDSGAQ  100 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~  100 (341)
                      .+|.+++|+....     ..+..+.+|...|..++|+++..   .+|++|+.|++|+|||+.++.. ...+.. ......
T Consensus        52 ~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~---~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~  122 (568)
T PTZ00420         52 LIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFS---EILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILK  122 (568)
T ss_pred             ceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCC---CEEEEEeCCCeEEEEECCCCCcccccccc-ceEEee
Confidence            3455566655443     45667889999999999988632   3799999999999999976432 111100 000012


Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~  180 (341)
                      .|...+.++.|.+....       .+++++.|+.+++||+....        .+..  ..+...|.+++|+|+|.+|+++
T Consensus       123 gH~~~V~sVaf~P~g~~-------iLaSgS~DgtIrIWDl~tg~--------~~~~--i~~~~~V~SlswspdG~lLat~  185 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYY-------IMCSSGFDSFVNIWDIENEK--------RAFQ--INMPKKLSSLKWNIKGNLLSGT  185 (568)
T ss_pred             cCCCcEEEEEECCCCCe-------EEEEEeCCCeEEEEECCCCc--------EEEE--EecCCcEEEEEECCCCCEEEEE
Confidence            35677888888765441       56789999999999986433        2222  3345789999999999999999


Q ss_pred             eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----eEEEEEcCCCCceeEEEEe
Q 019405          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~  256 (341)
                      +.|+.|++||+++++.+..+..|.....    ...+....|  ++++.+|++++.|+    +|++||++....++..+..
T Consensus       186 s~D~~IrIwD~Rsg~~i~tl~gH~g~~~----s~~v~~~~f--s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l  259 (568)
T PTZ00420        186 CVGKHMHIIDPRKQEIASSFHIHDGGKN----TKNIWIDGL--GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI  259 (568)
T ss_pred             ecCCEEEEEECCCCcEEEEEecccCCce----eEEEEeeeE--cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence            9999999999999998888877653210    011233345  57888999887774    7999999975556665543


Q ss_pred             cC--CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          257 RE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       257 ~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      +.  ..+......+++.++++|+.|+.|++|++..+.....-...+..++.+++|.|...
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            32  23333334556889999999999999999877532222222367889999999753

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.9e-27  Score=202.58  Aligned_cols=232  Identities=14%  Similarity=0.146  Sum_probs=177.7

Q ss_pred             eccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcc-------hheeeccCCCCCCCCCCceeeEeeeecc
Q 019405           44 RWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHLFKRQ  115 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (341)
                      .+.+|.+.|..++|++ ++.    +|++|+.|++|+|||+.++..       +..+.        .|...+.++.|.+..
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~----~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--------gH~~~V~~l~f~P~~  137 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQ----KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--------GHTKKVGIVSFHPSA  137 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCC----EEEEEeCCCEEEEEecCCCccccccCcceEEec--------CCCCcEEEEEeCcCC
Confidence            3567999999999998 444    799999999999999976532       22233        356778888887654


Q ss_pred             ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                      .+       .|++++.|+.++|||++...        .+..+. .|...|.+++|+|++.+|++++.|+.|++||+++++
T Consensus       138 ~~-------iLaSgs~DgtVrIWDl~tg~--------~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        138 MN-------VLASAGADMVVNVWDVERGK--------AVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             CC-------EEEEEeCCCEEEEEECCCCe--------EEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            32       89999999999999986433        333433 356789999999999999999999999999999998


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe----CCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCC
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----NDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDS  270 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~  270 (341)
                      .+..+..+..        .....+.|  .+++..+++++    .|+.|++||+++...++.....+. ..+....|++++
T Consensus       202 ~v~tl~~H~~--------~~~~~~~w--~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~  271 (493)
T PTZ00421        202 IVSSVEAHAS--------AKSQRCLW--AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT  271 (493)
T ss_pred             EEEEEecCCC--------CcceEEEE--cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence            8887766542        12345567  56666776654    478999999998666565554443 345566789999


Q ss_pred             ceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          271 FNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       271 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .+|++++ .|+.|++||+.+++++.........++..++|.|.-
T Consensus       272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            9998887 599999999999998877665446678899999854

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=2.7e-27  Score=202.85  Aligned_cols=290  Identities=17%  Similarity=0.203  Sum_probs=233.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      .+++.|+.+|.+++|++...     +++++|+++...|+++.-+|.-.    .+|.|..+|+|.|+|++.++.+.+++. 
T Consensus       173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~s~IT~ieqsPaLD----VVaiG~~~G~ViifNlK~dkil~sFk~-  242 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFFSRITAIEQSPALD----VVAIGLENGTVIIFNLKFDKILMSFKQ-  242 (910)
T ss_pred             eeEEEeecCCcEEEEEeccC-----cEEEEecccccceeEeccCCcce----EEEEeccCceEEEEEcccCcEEEEEEc-
Confidence            56889999999999999998     89999999999999887666555    799999999999999999999988886 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc------------------------cccC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS------------------------AESS  150 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~------------------------~~~~  150 (341)
                             ..++++.+.+-..+..       .++++...|.+.+||++..+..                        +.+.
T Consensus       243 -------d~g~VtslSFrtDG~p-------~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~  308 (910)
T KOG1539|consen  243 -------DWGRVTSLSFRTDGNP-------LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA  308 (910)
T ss_pred             -------cccceeEEEeccCCCe-------eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC
Confidence                   2366777666544332       6777777788888887655430                        1223


Q ss_pred             CceEEEEEee----------------------------------------------------------------------
Q 019405          151 CSTVKSWNVC----------------------------------------------------------------------  160 (341)
Q Consensus       151 ~~~v~~~~~~----------------------------------------------------------------------  160 (341)
                      |+.+++|-..                                                                      
T Consensus       309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~  388 (910)
T KOG1539|consen  309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF  388 (910)
T ss_pred             CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence            3333333221                                                                      


Q ss_pred             ------------------------------------------cC----------------CceEEEEecCCCCEEEEeeC
Q 019405          161 ------------------------------------------AS----------------GTIAFSKVDISEKFSLFGGK  182 (341)
Q Consensus       161 ------------------------------------------~~----------------~~i~~~~~~~~~~~l~~~~~  182 (341)
                                                                ..                ..+.+++.++-|++.+.|+.
T Consensus       389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S  468 (910)
T KOG1539|consen  389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS  468 (910)
T ss_pred             chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence                                                      00                13667788888999999999


Q ss_pred             CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK  262 (341)
Q Consensus       183 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  262 (341)
                      .|.|-+|++.+|-....+....      .|...|+.++.  ..-++.+++++.+|.+++||..+.. ++..+.. ..++.
T Consensus       469 ~G~Id~fNmQSGi~r~sf~~~~------ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~  538 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHRKSFGDSP------AHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSIT  538 (910)
T ss_pred             CCeEEEEEcccCeeecccccCc------cccCceeEEEe--cCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcc
Confidence            9999999999988777663111      13467999999  7778889999999999999999744 4566653 35788


Q ss_pred             EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+..+.....++++..|-.|+++|..+.+.++.|.+| .+.|++++|||||++|++++.|++||+||+.+++++..+
T Consensus       539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence            8899888889999999999999999999999999998 999999999999999999999999999999999988754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=190.95  Aligned_cols=230  Identities=14%  Similarity=0.159  Sum_probs=197.2

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~  145 (341)
                      +.+++|+.|..+.++|...++.+..+++|        ...+..+.+.+...        .+++++.|-.++||.+.....
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------~kki~~v~~~~~~~--------~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGH--------TKKITSVKFHKDLD--------TVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCc--------ceEEEEEEeccchh--------heeecCCcceEEeeccccccC
Confidence            46999999999999999999999999984        46677777776666        899999999999999765431


Q ss_pred             ccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       146 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                              .... ..|.++|+.+..+|.|.||++++.|++..+.|++++..+........       ...+++.+|  +|
T Consensus       296 --------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s-------~v~~ts~~f--Hp  357 (506)
T KOG0289|consen  296 --------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS-------DVEYTSAAF--HP  357 (506)
T ss_pred             --------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc-------cceeEEeeE--cC
Confidence                    1122 24678999999999999999999999999999999988876654321       134889999  89


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      ||.+|.+|..|+.|+|||+..+.. +..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.-....++.
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~-~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTN-VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccc-cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence            999999999999999999998774 8999999999999999999999999999999999999988888777765455799


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ++.|.+.|.+|+.++.|=.|++++-
T Consensus       437 s~~fD~SGt~L~~~g~~l~Vy~~~k  461 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSDLQVYICKK  461 (506)
T ss_pred             eEEEcCCCCeEEeecceeEEEEEec
Confidence            9999999999999988877777763

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.1e-27  Score=192.19  Aligned_cols=261  Identities=16%  Similarity=0.175  Sum_probs=190.7

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-cC-CCCCCCCCCceeeEeeeeccccccccccce
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-AG-DSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      |.+.|+-+..-|-..   .++|+++..+.|.|||..+-.......+ .. .....+|.+.-.++.|.....       +.
T Consensus       123 h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-------g~  192 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-------GT  192 (422)
T ss_pred             CCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-------ee
Confidence            556665555444333   3678888999999999865322221110 00 000112334344466655443       29


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC--CceeeecCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK--CEKIWTAKP  202 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~  202 (341)
                      +++++.|+.+.+|++....... ... ..+.+...|...|..++|++ +..++++++.|+.+.|||+++  .+.......
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~-~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKED-KVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             EeeccCCCcEEEEeccccccCC-ccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            9999999999999997665421 111 22344446788999999998 457888999999999999995  333333333


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGD  281 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~  281 (341)
                               |...+.|++|. +-++..||+|+.|++|++||+|+.+.++.++.+|+..|..+.|+|.. ..|++++.|+.
T Consensus       271 ---------h~~~vn~~~fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  271 ---------HSAEVNCVAFN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             ---------cCCceeEEEeC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence                     45779999995 34677899999999999999999888899999999999999999965 67888999999


Q ss_pred             EEEEECCCC--------------eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405          282 LASVDIRTG--------------KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK  331 (341)
Q Consensus       282 i~iwd~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~  331 (341)
                      +.+||+..-              +++..-.|| ...|..+.|+|+.+ .+++.+.|+.+.||++.
T Consensus       341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999998631              334555566 89999999999988 57888999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.1e-27  Score=207.39  Aligned_cols=241  Identities=15%  Similarity=0.232  Sum_probs=203.3

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ...+.+..+. +     .++++++.|++|++|+..++..+.. +.+        |.+.+.++++.....        .++
T Consensus       208 ~~~~~~~q~~-~-----~~~~~~s~~~tl~~~~~~~~~~i~~~l~G--------H~g~V~~l~~~~~~~--------~lv  265 (537)
T KOG0274|consen  208 DHVVLCLQLH-D-----GFFKSGSDDSTLHLWDLNNGYLILTRLVG--------HFGGVWGLAFPSGGD--------KLV  265 (537)
T ss_pred             cchhhhheee-c-----CeEEecCCCceeEEeecccceEEEeeccC--------CCCCceeEEEecCCC--------EEE
Confidence            4444444444 2     2599999999999999999888777 766        557888888876444        999


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      +|+.|.++++|++..+.        .+.++. .|...+.++...  ...+++|+.|.+|++|++.++..+..+.+|.   
T Consensus       266 sgS~D~t~rvWd~~sg~--------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---  331 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGE--------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---  331 (537)
T ss_pred             EEecCCcEEeEecCCCc--------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---
Confidence            99999999999976443        666665 366777777764  5678889999999999999999998888754   


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                            .+|.++..    ++.++++|+.|++|++||..+++. +..+.+|..+|.++.+.+. ..+++|+.|+.|++||+
T Consensus       332 ------~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl  399 (537)
T KOG0274|consen  332 ------GPVNCVQL----DEPLLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL  399 (537)
T ss_pred             ------ccEEEEEe----cCCEEEEEecCceEEEEEhhhcee-eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence                  67999998    588999999999999999998775 9999999999999988765 79999999999999999


Q ss_pred             CCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          288 RTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       288 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ++. +++..+.+| ..-+..+.+  .+++|++++.|+.|++||..+++++++++
T Consensus       400 ~~~~~c~~tl~~h-~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  400 RTKRKCIHTLQGH-TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             CchhhhhhhhcCC-ccccccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence            999 999999998 777765554  67899999999999999999999998875

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.8e-26  Score=199.39  Aligned_cols=235  Identities=13%  Similarity=0.079  Sum_probs=173.5

Q ss_pred             EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (341)
Q Consensus        71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~  150 (341)
                      |+.++.|++|+......+..+.+        |.+.+.++.|.+....       .|++++.|+.+++|++..........
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~g--------H~~~V~~lafsP~~~~-------lLASgS~DgtIrIWDi~t~~~~~~~i  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKG--------HTSSILDLQFNPCFSE-------ILASGSEDLTIRVWEIPHNDESVKEI  114 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcC--------CCCCEEEEEEcCCCCC-------EEEEEeCCCeEEEEECCCCCcccccc
Confidence            56788999999876655555554        5578999988765332       89999999999999986432100000


Q ss_pred             CceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          151 CSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       151 ~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                      ...+..+. .|...|.+++|+|++.. +++++.|++|++||+++++....+..+          ..|.+++|  ++++.+
T Consensus       115 ~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~Slsw--spdG~l  181 (568)
T PTZ00420        115 KDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKW--NIKGNL  181 (568)
T ss_pred             ccceEEee-cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEE--CCCCCE
Confidence            11222333 46788999999998875 578999999999999998876665421          44899999  899999


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-----EEEcCCCceEEEEeCCC----CEEEEECCC-CeEEeEEecc
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGK  299 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~g~~dg----~i~iwd~~~-~~~~~~~~~~  299 (341)
                      |++++.|+.|++||+++++. +..+.+|.+.+..     ..|++++.+|++++.|+    .|+|||+++ .+++..+..+
T Consensus       182 Lat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        182 LSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             EEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence            99999999999999998764 7888889876543     23468888999877764    699999995 5566555432


Q ss_pred             c-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          300 C-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       300 ~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      . .+.+.-....+++.++++|+.|+.|++|++..+.
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence            1 2333333345568899999999999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=191.48  Aligned_cols=250  Identities=16%  Similarity=0.250  Sum_probs=194.1

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ...+|..++||+...-+   +|+++ .-.+.||+..+....+++..+.        +.+.+..+-....        .++
T Consensus        25 e~~~vssl~fsp~~P~d---~aVt~-S~rvqly~~~~~~~~k~~srFk--------~~v~s~~fR~DG~--------Lla   84 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYD---FAVTS-SVRVQLYSSVTRSVRKTFSRFK--------DVVYSVDFRSDGR--------LLA   84 (487)
T ss_pred             ccCcceeEecCCCCCCc---eEEec-ccEEEEEecchhhhhhhHHhhc--------cceeEEEeecCCe--------EEE
Confidence            45778889998865532   55554 4789999998887777776541        3344444443433        888


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      +|...|.++|+|+....        .++.++ .|..++..+.|+|++ ..+++|+.|+.+++||+.+......+..|+  
T Consensus        85 aGD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht--  153 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT--  153 (487)
T ss_pred             ccCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc--
Confidence            88899999999954311        344444 367899999999965 567788899999999999988755666654  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                             .+|.|.+|. +.++..+++|+.||.|++||.+.....+..+. |..+|-.+.+-|.|..|++++. +.+++||
T Consensus       154 -------DYVR~g~~~-~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWD  223 (487)
T KOG0310|consen  154 -------DYVRCGDIS-PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWD  223 (487)
T ss_pred             -------ceeEeeccc-cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence                   889999995 34556899999999999999998644466665 8899999999999999988764 5899999


Q ss_pred             CCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       287 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +-+| +++..+..| ...|+|+++..++..|++++.|+.|++||+.+.+.+..+
T Consensus       224 l~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  224 LTTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             ecCCceehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            9955 555555556 889999999999999999999999999998888877654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=182.10  Aligned_cols=265  Identities=16%  Similarity=0.186  Sum_probs=210.8

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      +++..|.+|...+-.++.....    +.+.+++.|.+-+||.+++++++.++.+|        .+.+.++.+.+...   
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tq----pi~gtASADhTA~iWs~Esg~CL~~Y~GH--------~GSVNsikfh~s~~---  203 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQ----PICGTASADHTARIWSLESGACLATYTGH--------TGSVNSIKFHNSGL---  203 (481)
T ss_pred             eehhhhcccccceeeehhhcCC----cceeecccccceeEEeeccccceeeeccc--------ccceeeEEeccccc---
Confidence            4556677888888777644322    37999999999999999999999999984        58888998888776   


Q ss_pred             ccccceeEEEcccceeEEEEeeec----cc-c----------------------cccCC-ceEEEE--E-eecCCceEEE
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVT----KV-S----------------------AESSC-STVKSW--N-VCASGTIAFS  168 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~----~~-~----------------------~~~~~-~~v~~~--~-~~~~~~i~~~  168 (341)
                           .+++++.|++..||.....    .. +                      +...| .++++-  . ..|...|.+.
T Consensus       204 -----L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  204 -----LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             -----eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence                 8999999999999973211    00 0                      00111 122221  1 1245677888


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      .|-..++.+++++.|.+-.+||+++++.+..+.+|..         ..+.++-  +|..+++++++.|-+.++||++..-
T Consensus       279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~---------ELtHcst--HptQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS---------ELTHCST--HPTQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             hhhcCcceeeeeeccccceeeeeccCceeccccCcch---------hcccccc--CCcceEEEEeccCceeEeccchhhc
Confidence            8888999999999999999999999999999888763         3555566  7889999999999999999999765


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      ..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++..  ..+++.++.+..++.++.--.+..|++
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRl  424 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRL  424 (481)
T ss_pred             ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec--CCccceeEeecCCceEEeccCCceEEE
Confidence            6688999999999999998765 68899999999999999764 5677765  679999999999999999999999999


Q ss_pred             EEcCCCceeeee
Q 019405          328 WDIKTRQLLSAV  339 (341)
Q Consensus       328 wd~~~~~~~~~~  339 (341)
                      ||++ |..+.++
T Consensus       425 fDln-G~RlaRl  435 (481)
T KOG0300|consen  425 FDLN-GNRLARL  435 (481)
T ss_pred             EecC-CCccccC
Confidence            9997 5555544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=7.5e-27  Score=178.16  Aligned_cols=250  Identities=19%  Similarity=0.196  Sum_probs=193.8

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      ..+..|..++||+...   .+++.++.||+||+|+++. |....+...       .+.+++.+++|.+...        .
T Consensus        25 pP~DsIS~l~FSP~~~---~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~Wsddgs--------k   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQAD---NLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGS--------K   86 (347)
T ss_pred             CcccchheeEeccccC---ceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCc--------e
Confidence            4678899999999333   3677999999999999987 444443222       3678999999988776        8


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC--EEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      +++++.|+.+++||+..+         .+.... .|.++|.++.|-+...  .|++|+.|.+|+.||.+...++..+..+
T Consensus        87 Vf~g~~Dk~~k~wDL~S~---------Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP  156 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASG---------QVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP  156 (347)
T ss_pred             EEeeccCCceEEEEccCC---------Ceeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence            999999999999999654         334443 3678899999876554  8999999999999999998888877765


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDL  282 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i  282 (341)
                                +.++++..    ...+++++..++.|.+|+++++....+.... -+-.+++++..++....+.|+-+|.+
T Consensus       157 ----------eRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv  222 (347)
T KOG0647|consen  157 ----------ERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV  222 (347)
T ss_pred             ----------ceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence                      44676665    4568899999999999999875432222111 12357889988888888999999999


Q ss_pred             EEEECCCC--eEEeEEecccc--------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          283 ASVDIRTG--KLLGCFIGKCS--------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       283 ~iwd~~~~--~~~~~~~~~~~--------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .|..+..+  +.-..|+.|..        -.|++++|+|.-..|+|++.||+..+||-+....|.+
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence            99988876  44556666631        2578899999999999999999999999877665554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-26  Score=198.58  Aligned_cols=290  Identities=17%  Similarity=0.201  Sum_probs=217.5

Q ss_pred             CCCceee-eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           12 CPPLRAL-TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        12 ~~~~~~~-~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      .|.+.++ .|..+|.|.++++..+     +.+.+|+...+.|+.++|.-|++|   ++++|+..|.+.+||++..+....
T Consensus       211 sPaLDVVaiG~~~G~ViifNlK~d-----kil~sFk~d~g~VtslSFrtDG~p---~las~~~~G~m~~wDLe~kkl~~v  282 (910)
T KOG1539|consen  211 SPALDVVAIGLENGTVIIFNLKFD-----KILMSFKQDWGRVTSLSFRTDGNP---LLASGRSNGDMAFWDLEKKKLINV  282 (910)
T ss_pred             CCcceEEEEeccCceEEEEEcccC-----cEEEEEEccccceeEEEeccCCCe---eEEeccCCceEEEEEcCCCeeeee
Confidence            3444444 5779999999999998     788889666799999999999997   699999999999999998777666


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccc--------------------c-----------c--------cccccceeEEEcc
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQR--------------------E-----------E--------SSSRSRTLLTCTT  131 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-----------~--------~~~~~~~l~~~~~  131 (341)
                      ....       |.+.+....+.+...                    .           .        .++....+++++.
T Consensus       283 ~~na-------h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  283 TRNA-------HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             eecc-------ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence            6531       222222222222222                    0           0        0001113444444


Q ss_pred             cceeEEEEeeeccc------------------------------------------------------------------
Q 019405          132 KGKASMRSIEVTKV------------------------------------------------------------------  145 (341)
Q Consensus       132 ~g~~~i~~~~~~~~------------------------------------------------------------------  145 (341)
                      |++.+.+++.....                                                                  
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G  435 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG  435 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence            44443333211000                                                                  


Q ss_pred             ----------------------------ccccCCceEEEEEeec-------------CCceEEEEecCCCCEEEEeeCCC
Q 019405          146 ----------------------------SAESSCSTVKSWNVCA-------------SGTIAFSKVDISEKFSLFGGKGV  184 (341)
Q Consensus       146 ----------------------------~~~~~~~~v~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d~  184 (341)
                                                  .-+...|.|.+|+++.             .++|..++.+.-++.+++++.+|
T Consensus       436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G  515 (910)
T KOG1539|consen  436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG  515 (910)
T ss_pred             cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence                                        0123456666776543             36799999999899999999999


Q ss_pred             eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV  264 (341)
Q Consensus       185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  264 (341)
                      .+++||..+...+..+...          ..+.++.+  +.....++.+..|-.|+++|..+.+. ++.+.+|...|+++
T Consensus       516 ilkfw~f~~k~l~~~l~l~----------~~~~~iv~--hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~  582 (910)
T KOG1539|consen  516 ILKFWDFKKKVLKKSLRLG----------SSITGIVY--HRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDM  582 (910)
T ss_pred             eEEEEecCCcceeeeeccC----------CCcceeee--eehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeee
Confidence            9999999988766655543          33677777  56777899999999999999998664 89999999999999


Q ss_pred             EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-CcEEEEEcC
Q 019405          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-SYLRFWDIK  331 (341)
Q Consensus       265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~v~iwd~~  331 (341)
                      +|||||++|++++.|++|++||+.++.++-.+..  ..++.++.|+|+|.+|||...| .-|++|--+
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            9999999999999999999999999999988875  6899999999999999999998 579999654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.5e-27  Score=187.93  Aligned_cols=256  Identities=17%  Similarity=0.150  Sum_probs=204.0

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      +.+.+|...|-.+.||.++.    |||+|+.|.+..||.+.....   .+++.+        |..++.-+.|.+.+.   
T Consensus       218 qil~~htdEVWfl~FS~nGk----yLAsaSkD~Taiiw~v~~d~~~kl~~tlvg--------h~~~V~yi~wSPDdr---  282 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGK----YLASASKDSTAIIWIVVYDVHFKLKKTLVG--------HSQPVSYIMWSPDDR---  282 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCe----eEeeccCCceEEEEEEecCcceeeeeeeec--------ccCceEEEEECCCCC---
Confidence            34677999999999998877    999999999999998865433   344444        457787788777776   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           ++++++.+..+.+||+..+.        ..+.+...++-.+.+++|.|||..+++|+.|+++..||++. .....
T Consensus       283 -----yLlaCg~~e~~~lwDv~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~  348 (519)
T KOG0293|consen  283 -----YLLACGFDEVLSLWDVDTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGN  348 (519)
T ss_pred             -----eEEecCchHheeeccCCcch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhc
Confidence                 99999999999999987655        34445444467889999999999999999999999999964 33333


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .+...        ...|.+++.  .+||+++++.+.|..|++|+..+... +.... ...+|++++.|.+++++++--.+
T Consensus       349 W~gvr--------~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  349 WEGVR--------DPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGLIS-EEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             ccccc--------cceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hcccc-ccCceeEEEEcCCCcEEEEEccc
Confidence            33222        133889999  89999999999999999999887432 33333 44689999999999999999999


Q ss_pred             CCEEEEECCCCeEEeEEeccccC-ceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSG-SIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..+++||++..+.+..+.||..+ -|-.-+|-- +..++++||+|+.|+||+..+|+++.++
T Consensus       417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L  478 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL  478 (519)
T ss_pred             CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence            99999999999999999988322 344445644 4479999999999999999999999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.2e-25  Score=169.85  Aligned_cols=272  Identities=14%  Similarity=0.163  Sum_probs=212.1

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchhee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~   91 (341)
                      ...+++++.|..+++++..+.     +.+.+...+.-.+..+.|.....    .++.++.  |.+||..++.+.+.++.+
T Consensus        26 G~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~~~~~Fth~~~----~~i~sStk~d~tIryLsl~dNkylRYF   96 (311)
T KOG1446|consen   26 GLLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGVDLACFTHHSN----TVIHSSTKEDDTIRYLSLHDNKYLRYF   96 (311)
T ss_pred             CCEEEEecCCCeEEEEEcCCC-----ceeeEeecccccccEEEEecCCc----eEEEccCCCCCceEEEEeecCceEEEc
Confidence            356777888888899888876     55556656666777777776555    3555555  889999999999999999


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .+        |.+.|+.+...+.++        .+++++.|.++++||++..+        ..-....   ..-..++++
T Consensus        97 ~G--------H~~~V~sL~~sP~~d--------~FlS~S~D~tvrLWDlR~~~--------cqg~l~~---~~~pi~AfD  149 (311)
T KOG1446|consen   97 PG--------HKKRVNSLSVSPKDD--------TFLSSSLDKTVRLWDLRVKK--------CQGLLNL---SGRPIAAFD  149 (311)
T ss_pred             CC--------CCceEEEEEecCCCC--------eEEecccCCeEEeeEecCCC--------CceEEec---CCCcceeEC
Confidence            88        558899999888887        99999999999999997443        2222222   122367899


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  249 (341)
                      |+|-++|++...+.|++||++.-  .+...+.....      .....+.+.|  +|+|+.++.+...+.+++.|.-++..
T Consensus       150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------~~~ew~~l~F--S~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------DEAEWTDLEF--SPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------CccceeeeEE--cCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            99999999988889999999853  23333322211      1245789999  99999999999999999999998874


Q ss_pred             eeEEEEecCCCe---EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          250 PVMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       250 ~~~~~~~~~~~v---~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                       ..++..+...-   -..+|+||++++++|+.||+|.+|++++++.+..+++.+.+++.++.|+|.-..+++++  ..+.
T Consensus       222 -~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~  298 (311)
T KOG1446|consen  222 -KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLV  298 (311)
T ss_pred             -eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEE
Confidence             77777654332   46789999999999999999999999999999999995588999999999987777765  4577


Q ss_pred             EEEcCC
Q 019405          327 FWDIKT  332 (341)
Q Consensus       327 iwd~~~  332 (341)
                      +|=...
T Consensus       299 fw~p~~  304 (311)
T KOG1446|consen  299 FWLPDE  304 (311)
T ss_pred             EEeccc
Confidence            886543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.7e-27  Score=197.22  Aligned_cols=287  Identities=15%  Similarity=0.129  Sum_probs=218.2

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCcc-----------ceee------e--------c-------cCCCCCceeEEEecc
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVP-----------KVVE------R--------W-------GDPHSSNCVLAASID   60 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~-----------~~~~------~--------~-------~~~~~~~~~~~~s~~   60 (341)
                      |+..+++|++||+|++|++.....+..           +..+      .        |       -+....+.+++.|++
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            556699999999999999886211100           0000      0        0       012234566676655


Q ss_pred             CCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEe
Q 019405           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (341)
Q Consensus        61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~  140 (341)
                      +.    +||+|..-|+++||++.+.+.+..++.        |+.+|.|+.+..+.-     ....|++++.|..|+|+|+
T Consensus       471 gq----hLAsGDr~GnlrVy~Lq~l~~~~~~eA--------HesEilcLeyS~p~~-----~~kLLASasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  471 GQ----HLASGDRGGNLRVYDLQELEYTCFMEA--------HESEILCLEYSFPVL-----TNKLLASASRDRLIHVYDV  533 (1080)
T ss_pred             cc----eecccCccCceEEEEehhhhhhhheec--------ccceeEEEeecCchh-----hhHhhhhccCCceEEEEec
Confidence            55    999999999999999998888888776        568899998865543     2238999999999999998


Q ss_pred             eecccccccCCceEEEEEeecCCceEEEEecCCC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      ..+-.       .+...+ .|...|++++|...|  ..+++++.|..|.+--.........+..+....    ....++.
T Consensus       534 ~rny~-------l~qtld-~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~----~ktTlYD  601 (1080)
T KOG1408|consen  534 KRNYD-------LVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL----SKTTLYD  601 (1080)
T ss_pred             ccccc-------hhhhhc-ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc----ccceEEE
Confidence            65432       222222 356789999998776  678999999877643332211122222222110    1245888


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  295 (341)
                      ++.  .|..+++++++.|+.|+|||+.++++ ++.|++   |++....+...|.|.||++.+.|.++.++|..+|+++..
T Consensus       602 m~V--dp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  602 MAV--DPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             eee--CCCcceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            898  88999999999999999999999886 777875   566778899999999999999999999999999999999


Q ss_pred             EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       296 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +.+| ...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus       679 m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence            9999 89999999999999999999999999999875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5.7e-29  Score=191.83  Aligned_cols=174  Identities=15%  Similarity=0.222  Sum_probs=157.3

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ...+.|..|+|||+++++|+.||-|.+||..+|+....++-.....+.+ +...|.|+.|  +.|...+++|+.||.|++
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~F--SRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISF--SRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceee-cccceEEEee--cccHHHhhccCcCCcEEE
Confidence            3567899999999999999999999999999998877666554444333 4577999999  899999999999999999


Q ss_pred             EEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       242 wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      |.++++.+ ++.+. .|...|+++.|+.|+..+++++.|.++++--+.+|+++..|++| .+-|+...|.++|..+++++
T Consensus       290 Wri~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  290 WRIETGQC-LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEEecchH-HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCCCeEEEec
Confidence            99999887 66665 79999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeec
Q 019405          321 LDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       321 ~dg~v~iwd~~~~~~~~~~~  340 (341)
                      .||+|++|+.++++|+.++.
T Consensus       368 sDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             CCccEEEecCcchhhhhhcc
Confidence            99999999999999998764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.1e-26  Score=201.11  Aligned_cols=291  Identities=14%  Similarity=0.107  Sum_probs=221.6

Q ss_pred             ceeeeec--CCCCeEEEEEecCc-------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405           15 LRALTFD--SLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (341)
Q Consensus        15 ~~~~~~~--~~g~i~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~   85 (341)
                      .++.+|+  .||.+.+|+...-.       .-.++.+-+...|.+.+.|+.|++|++    +||+|+.|+.|.||.....
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~----~lAsGSDD~~v~iW~~~~~  101 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS----YLASGSDDRLVMIWERAEI  101 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC----eEeeccCcceEEEeeeccc
Confidence            6677888  78888899865421       113455566778999999999998888    9999999999999998731


Q ss_pred             cchheeec----cCC-------CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405           86 DLRVAISN----AGD-------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (341)
Q Consensus        86 ~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v  154 (341)
                       .....-+    +..       .....|+..+..+.|-+.+.        .+++++.|+++.||+.....        .+
T Consensus       102 -~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--------~lvS~s~DnsViiwn~~tF~--------~~  164 (942)
T KOG0973|consen  102 -GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--------LLVSVSLDNSVIIWNAKTFE--------LL  164 (942)
T ss_pred             -CCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--------EEEEecccceEEEEccccce--------ee
Confidence             0000000    000       00123667788888877655        99999999999999976443        56


Q ss_pred             EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      ++.+. |...|..+.|+|-|++||+-+.|++|++|++.+-.....+..+..+...   ...+..+.|  +|||.+|++..
T Consensus       165 ~vl~~-H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~---~T~f~RlSW--SPDG~~las~n  238 (942)
T KOG0973|consen  165 KVLRG-HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL---TTFFLRLSW--SPDGHHLASPN  238 (942)
T ss_pred             eeeec-ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC---cceeeeccc--CCCcCeecchh
Confidence            66664 6788999999999999999999999999997765555555554332221   255888999  99999999864


Q ss_pred             C----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-----Cc------------eEEEEeCCCCEEEEECCCCeEE
Q 019405          235 N----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----SF------------NIYIGNGSGDLASVDIRTGKLL  293 (341)
Q Consensus       235 ~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~g~~dg~i~iwd~~~~~~~  293 (341)
                      .    -.++.|.+..+.+. -..+-+|..++.+++|+|.     ..            .+|+|+.|++|.||.....+++
T Consensus       239 A~n~~~~~~~IieR~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             hccCCcceeEEEecCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            3    24688888766554 6778899999999999882     11            6789999999999999888887


Q ss_pred             eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .....-....|..++|+|||-.|+.+|.||+|.++.++..
T Consensus       318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            6655444679999999999999999999999999998764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.2e-27  Score=187.27  Aligned_cols=251  Identities=14%  Similarity=0.243  Sum_probs=201.3

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      .+..|.+.+..+-|-.+..    .|++|+.|..|++|+...++  ...++.+        ..+++..+.+-.++.     
T Consensus       170 ~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~~~~~tLaG--------s~g~it~~d~d~~~~-----  232 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKSELISTLAG--------SLGNITSIDFDSDNK-----  232 (459)
T ss_pred             hhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchhhhhhhhhc--------cCCCcceeeecCCCc-----
Confidence            4556888999888887744    59999999999999997665  3333333        446788888777666     


Q ss_pred             ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  201 (341)
                         .+++++.|+..++|+++....        ...... |...|+++.|......+++|+.|.+|++||+....+..++-
T Consensus       233 ---~~iAas~d~~~r~Wnvd~~r~--------~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l  300 (459)
T KOG0288|consen  233 ---HVIAASNDKNLRLWNVDSLRL--------RHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL  300 (459)
T ss_pred             ---eEEeecCCCceeeeeccchhh--------hhhhcc-cccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence               899999999999999975542        222232 67889999998777779999999999999999877766544


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCC
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD  281 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~  281 (341)
                      ..          ..+..+..    ....+++|..|++|++||.+.... +.....+. .|+++..++++..|.+.+.|..
T Consensus       301 ~~----------S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~~~-~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt  364 (459)
T KOG0288|consen  301 PG----------SQCNDIVC----SISDVISGHFDKKVRFWDIRSADK-TRSVPLGG-RVTSLDLSMDGLELLSSSRDDT  364 (459)
T ss_pred             cc----------ccccceEe----cceeeeecccccceEEEeccCCce-eeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence            32          22555555    256788999999999999998664 77777664 9999999999999999999999


Q ss_pred             EEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          282 LASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       282 i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+.|+++.+....+...   .....+.+.|||++.|+++||.||.|+||++.++++...+
T Consensus       365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l  425 (459)
T KOG0288|consen  365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL  425 (459)
T ss_pred             eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence            999999999888777642   1235888999999999999999999999999999987765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.9e-25  Score=167.82  Aligned_cols=211  Identities=16%  Similarity=0.244  Sum_probs=181.9

Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~  179 (341)
                      .+|+.+++.+.+....+        .|++++.|....+|--..++        .+-.++ .|.+.|+|++++.+.+.+++
T Consensus         7 ~GHERplTqiKyN~eGD--------LlFscaKD~~~~vw~s~nGe--------rlGty~-GHtGavW~~Did~~s~~liT   69 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGD--------LLFSCAKDSTPTVWYSLNGE--------RLGTYD-GHTGAVWCCDIDWDSKHLIT   69 (327)
T ss_pred             ccCccccceEEecCCCc--------EEEEecCCCCceEEEecCCc--------eeeeec-CCCceEEEEEecCCcceeee
Confidence            45788899998887777        99999999999999754333        455565 47889999999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCC------C
Q 019405          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQ------R  248 (341)
Q Consensus       180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~------~  248 (341)
                      |+.|.++++||+++|+++..++..          ..|..+.|  ++++++++....+     +.|.++|++..      +
T Consensus        70 GSAD~t~kLWDv~tGk~la~~k~~----------~~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLATWKTN----------SPVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             ccccceeEEEEcCCCcEEEEeecC----------CeeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            999999999999999999988865          55899999  8899988876543     67999999842      3


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      .|+..+..+.+.++.+-|+|-++.|++|..||.|.+||+++|+. +..-+.| ...|+.|+++|+..+++++|.|.+-++
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccCCcceEEecccCcccee
Confidence            46788888889999999999999999999999999999999855 5555666 889999999999999999999999999


Q ss_pred             EEcCCCceeeeec
Q 019405          328 WDIKTRQLLSAVC  340 (341)
Q Consensus       328 wd~~~~~~~~~~~  340 (341)
                      ||+.+-++++++.
T Consensus       217 ~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  217 VDVRTLEVLKTYT  229 (327)
T ss_pred             eeccceeeEEEee
Confidence            9999998888763

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.7e-26  Score=183.32  Aligned_cols=269  Identities=17%  Similarity=0.195  Sum_probs=199.4

Q ss_pred             CCeEEEEEecCccCccceeeeccCC-CCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCCCC
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQP  101 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~  101 (341)
                      ..+.+|++..+     ..+.+|++. ...-..+. ...    .++++++.. ...|.+|.+...........        
T Consensus        18 ~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~-~l~----~~yllsaq~~rp~l~vw~i~k~~~~~q~~v--------   79 (476)
T KOG0646|consen   18 INCIVWDLRTG-----TSLLQYKGSYLAQAASLT-ALN----NEYLLSAQLKRPLLHVWEILKKDQVVQYIV--------   79 (476)
T ss_pred             cceeEEecCCC-----ceeEEecCcccccchhhh-hhc----hhheeeecccCccccccccCchhhhhhhcc--------
Confidence            45789999886     444466543 11111111 011    135666653 45799999865443331111        


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      -.+++.++...+...        +++.++..|.+.+|.+..+.        .+.+|. .|-..|+|+.|+.|+.+|++|+
T Consensus        80 ~Pg~v~al~s~n~G~--------~l~ag~i~g~lYlWelssG~--------LL~v~~-aHYQ~ITcL~fs~dgs~iiTgs  142 (476)
T KOG0646|consen   80 LPGPVHALASSNLGY--------FLLAGTISGNLYLWELSSGI--------LLNVLS-AHYQSITCLKFSDDGSHIITGS  142 (476)
T ss_pred             cccceeeeecCCCce--------EEEeecccCcEEEEEecccc--------HHHHHH-hhccceeEEEEeCCCcEEEecC
Confidence            236788888777665        77777799999999998665        455663 5778999999999999999999


Q ss_pred             CCCeEEEEECCC---------CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          182 KGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       182 ~d~~v~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      .||.|.+|.+..         -++...+..|         .-+|+.+..-+.+...+|++++.|.++++||+..+.. +.
T Consensus       143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-Ll  212 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-LL  212 (476)
T ss_pred             CCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEecccee-eE
Confidence            999999998743         2233444443         3568888774344567899999999999999999864 55


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----------------eEEeEEeccccC--ceeEEEecCCCC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHPTLP  314 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~~~~~~~~--~i~~~~~~~~~~  314 (341)
                      ++. ...++.+++.+|-++.+++|+.+|.|.+.++...                ..+..+.+| .+  +|++++.+-||.
T Consensus       213 ti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  213 TIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAISTDGT  290 (476)
T ss_pred             EEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEecCcc
Confidence            554 3468999999999999999999999999886532                345667787 66  999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          315 IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|++|+.||.|+|||+.+.++++++
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHH
Confidence            9999999999999999999998875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.2e-26  Score=181.37  Aligned_cols=269  Identities=18%  Similarity=0.191  Sum_probs=204.0

Q ss_pred             ceeeeecCCCCeEEEEEecCcc--Cccce-----------eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405           15 LRALTFDSLGLIKVIEARGEHG--GVPKV-----------VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~--g~~~~-----------~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~   81 (341)
                      -+.++++++|+|..|++.....  .+++-           ......|...+.+++.|+|++    |||+|+.|..|.||+
T Consensus       155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk----ylatgg~d~~v~Iw~  230 (479)
T KOG0299|consen  155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK----YLATGGRDRHVQIWD  230 (479)
T ss_pred             cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc----EEEecCCCceEEEec
Confidence            3688999999998888776521  11111           011135777888889888877    999999999999999


Q ss_pred             CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec
Q 019405           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (341)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~  161 (341)
                      .++.+.++.+..        |.+.|.++++.....        .+.+++.|..+++|+++...        .+... ..|
T Consensus       231 ~~t~ehv~~~~g--------hr~~V~~L~fr~gt~--------~lys~s~Drsvkvw~~~~~s--------~vetl-yGH  285 (479)
T KOG0299|consen  231 CDTLEHVKVFKG--------HRGAVSSLAFRKGTS--------ELYSASADRSVKVWSIDQLS--------YVETL-YGH  285 (479)
T ss_pred             Ccccchhhcccc--------cccceeeeeeecCcc--------ceeeeecCCceEEEehhHhH--------HHHHH-hCC
Confidence            999999888776        568899999887776        89999999999999986443        22221 235


Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ...|..+....-++.+-+|+.|.++++|++....+ ..+..+.         +.+.|++|.   +...+++|+.||.|.+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~---------~sidcv~~I---n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGE---------GSIDCVAFI---NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCC---------CCeeeEEEe---cccceeeccCCceEEE
Confidence            67788888877777777888999999999954322 2233332         558999995   6678999999999999


Q ss_pred             EEcCCCCceeEEEEe-c-----------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----eEEeEEeccccCcee
Q 019405          242 YDTSAQRRPVMSFDF-R-----------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR  305 (341)
Q Consensus       242 wd~~~~~~~~~~~~~-~-----------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~i~  305 (341)
                      |++.+.+ |+.+... |           ..+|++++..|...++++|+.+|.|++|-+..+    +++..+..  .+.|+
T Consensus       353 Ws~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--~GfVN  429 (479)
T KOG0299|consen  353 WSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--VGFVN  429 (479)
T ss_pred             eeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc--ccEEE
Confidence            9998743 5655432 2           238999999999999999999999999998877    45666663  68999


Q ss_pred             EEEecCCCCEE-EEEeCCCcEEEE
Q 019405          306 SIARHPTLPII-ASCGLDSYLRFW  328 (341)
Q Consensus       306 ~~~~~~~~~~l-~s~~~dg~v~iw  328 (341)
                      +++|+++|+.+ +..+....+--|
T Consensus       430 sl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEEccCCCEEEEeccccccccee
Confidence            99999999954 444555555444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.8e-25  Score=170.15  Aligned_cols=256  Identities=12%  Similarity=0.102  Sum_probs=197.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++-||.+++++....     .+...+ .|..++...+|..+.+     +++|+.||.|+.+|+.++.... +.. 
T Consensus        26 ~~LLvssWDgslrlYdv~~~-----~l~~~~-~~~~plL~c~F~d~~~-----~~~G~~dg~vr~~Dln~~~~~~-igt-   92 (323)
T KOG1036|consen   26 SDLLVSSWDGSLRLYDVPAN-----SLKLKF-KHGAPLLDCAFADEST-----IVTGGLDGQVRRYDLNTGNEDQ-IGT-   92 (323)
T ss_pred             CcEEEEeccCcEEEEeccch-----hhhhhe-ecCCceeeeeccCCce-----EEEeccCceEEEEEecCCccee-ecc-
Confidence            34677788999999998876     343345 5788999888887666     9999999999999998775533 222 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             |.+++.|+......+        .+++|+.|+++++||.....          .......++.|.++...  +
T Consensus        93 -------h~~~i~ci~~~~~~~--------~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v~--g  145 (323)
T KOG1036|consen   93 -------HDEGIRCIEYSYEVG--------CVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDVS--G  145 (323)
T ss_pred             -------CCCceEEEEeeccCC--------eEEEcccCccEEEEeccccc----------cccccccCceEEEEecc--C
Confidence                   568899999886666        99999999999999976421          11222334577777764  7


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---cee
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV  251 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~  251 (341)
                      +.|++|+.+..+.+||+++...........-       .-.+.|+++.  |++.=+++++-||.|.+=.+....   ...
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------kyqtR~v~~~--pn~eGy~~sSieGRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------KYQTRCVALV--PNGEGYVVSSIEGRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccc-------eeEEEEEEEe--cCCCceEEEeecceEEEEccCCchHHhhhc
Confidence            7899999999999999998765543332221       1458899994  566667888999999887666541   113


Q ss_pred             EEEEecC---------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       252 ~~~~~~~---------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ..|+.|.         .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||.++
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEe
Confidence            4555553         37999999999889999999999999999999999999876 78899999999999999987

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=4.3e-24  Score=177.74  Aligned_cols=271  Identities=13%  Similarity=0.143  Sum_probs=191.1

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      +++.+.||.+++|++...     +.+..+..+.. +..+++++++.    .+ ++++.++.|++||..+++.+..+..+ 
T Consensus         4 ~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~-~~~l~~~~dg~----~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-   72 (300)
T TIGR03866         4 YVSNEKDNTISVIDTATL-----EVTRTFPVGQR-PRGITLSKDGK----LLYVCASDSDTIQVIDLATGEVIGTLPSG-   72 (300)
T ss_pred             EEEecCCCEEEEEECCCC-----ceEEEEECCCC-CCceEECCCCC----EEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence            567889999999998765     45556654433 45677776654    55 56778999999999988776555432 


Q ss_pred             CCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                              .....+.+.+...        .+ +++..++.+.+|++....        .+..+.  ....+..++++|++
T Consensus        73 --------~~~~~~~~~~~g~--------~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~dg  126 (300)
T TIGR03866        73 --------PDPELFALHPNGK--------ILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPDG  126 (300)
T ss_pred             --------CCccEEEECCCCC--------EEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCCC
Confidence                    1223344443333        44 455668999999986432        333332  23456789999999


Q ss_pred             CEEEEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeE
Q 019405          175 KFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       175 ~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  252 (341)
                      ++++++..++ .+.+||.++++........          ....++.|  ++++.+|+++ ..++.|++||+.+++. +.
T Consensus       127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~  193 (300)
T TIGR03866       127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEF--TADGKELWVSSEIGGTVSVIDVATRKV-IK  193 (300)
T ss_pred             CEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcCccee-ee
Confidence            9999888764 5778899887665543221          12456788  8899888654 4689999999998654 44


Q ss_pred             EEEecC-----C--CeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-eCCC
Q 019405          253 SFDFRE-----T--PIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDS  323 (341)
Q Consensus       253 ~~~~~~-----~--~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg  323 (341)
                      .+..+.     .  ....++|+|++++++++ ..++.+.+||+++++.+..+..  ...+.+++|+|++++|+++ +.++
T Consensus       194 ~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~  271 (300)
T TIGR03866       194 KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSN  271 (300)
T ss_pred             eeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCC
Confidence            444321     1  23468899999886554 4567899999999888766542  4578999999999998876 4689


Q ss_pred             cEEEEEcCCCceeeee
Q 019405          324 YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       324 ~v~iwd~~~~~~~~~~  339 (341)
                      .|++||+++++++.++
T Consensus       272 ~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       272 DVSVIDVAALKVIKSI  287 (300)
T ss_pred             eEEEEECCCCcEEEEE
Confidence            9999999999988776

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.3e-25  Score=180.48  Aligned_cols=256  Identities=20%  Similarity=0.177  Sum_probs=208.9

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-eeec------cC-CCCCC--CCCCceeeEeee
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AISN------AG-DSGAQ--PEDDGIVGLHLF  112 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~------~~-~~~~~--~~~~~~~~~~~~  112 (341)
                      ..++.|..++++++++++.+    +.++++.||+|.=|++.+++... .++.      |. +...+  .|.+.+.+++..
T Consensus       136 ~~~~~H~~s~~~vals~d~~----~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDK----RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeecccc----ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            45778999999999999888    89999999999999999887542 1111      11 11112  567888888888


Q ss_pred             eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405          113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD  192 (341)
Q Consensus       113 ~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~  192 (341)
                      +...        +|+++..|..+.||+.+..+        .++.|. .|.+.|.+++|-.....+++++.|..|++|+++
T Consensus       212 ~Dgk--------ylatgg~d~~v~Iw~~~t~e--------hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  212 SDGK--------YLATGGRDRHVQIWDCDTLE--------HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSID  274 (479)
T ss_pred             CCCc--------EEEecCCCceEEEecCcccc--------hhhccc-ccccceeeeeeecCccceeeeecCCceEEEehh
Confidence            8777        99999999999999987554        555555 478899999999888899999999999999999


Q ss_pred             CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce
Q 019405          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (341)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  272 (341)
                      ....+..+.+|.         ..|.++..  ..-++.+-+|+.|+++++|++....  ...+.++...+-|++|-.+ ..
T Consensus       275 ~~s~vetlyGHq---------d~v~~Ida--L~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~-~H  340 (479)
T KOG0299|consen  275 QLSYVETLYGHQ---------DGVLGIDA--LSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND-EH  340 (479)
T ss_pred             HhHHHHHHhCCc---------cceeeech--hcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-cc
Confidence            888888887764         55777777  4456667777799999999996533  5567888889999999654 47


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEEeccc-----------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          273 IYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      +++|+.+|.|.+|++...+++.+.+..|           ..+|++++..|...++++|+.+|.|++|.+..|
T Consensus       341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            8999999999999999998887765322           128999999999999999999999999999987

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.4e-25  Score=170.49  Aligned_cols=246  Identities=16%  Similarity=0.181  Sum_probs=191.3

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ....+..+.|++...    .|++++.||.+++|+.........+.         +..++.+.++.+ ..        .++
T Consensus        12 P~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~l~~~~~---------~~~plL~c~F~d-~~--------~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANSLKLKFK---------HGAPLLDCAFAD-ES--------TIV   69 (323)
T ss_pred             ChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchhhhhhee---------cCCceeeeeccC-Cc--------eEE
Confidence            456678888884444    68888899999999998876555554         347788777766 33        799


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      +++.||.++.+|++..+.        ..  -..|...|.|+...+....+++|+.|++|++||.++......+...    
T Consensus        70 ~G~~dg~vr~~Dln~~~~--------~~--igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~----  135 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNE--------DQ--IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG----  135 (323)
T ss_pred             EeccCceEEEEEecCCcc--------ee--eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC----
Confidence            999999999999976542        11  1246789999999998899999999999999999875554444433    


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                            ..|.++..    .++.|++|+.|..+.+||+++...+.+.-. .-+..++++++-|++.=.++++-||.|.+=.
T Consensus       136 ------kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~  205 (323)
T KOG1036|consen  136 ------KKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY  205 (323)
T ss_pred             ------ceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence                  34888776    688999999999999999998765442221 1235689999999888899999999988765


Q ss_pred             CCCC----eEEeEEeccc--------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          287 IRTG----KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       287 ~~~~----~~~~~~~~~~--------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +...    +....|+.|.        --+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+
T Consensus       206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence            5544    4456666662        137999999999999999999999999999998877654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=2.2e-25  Score=187.68  Aligned_cols=265  Identities=13%  Similarity=0.103  Sum_probs=207.4

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCcee-EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV-LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      ++..+++++.||++++|.-..+   .+...+.+.+|.+-+.. +++-.   .++-.|++|+.|.+|.+|......++..+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~---~~l~~~~~~~~~g~i~~~i~y~e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~L   97 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGK---QYLETHAFEGPKGFIANSICYAE---SDKGRLVVGGMDTTIIVFKLSQAEPLYTL   97 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCc---ccccceecccCcceeeccceecc---ccCcceEeecccceEEEEecCCCCchhhh
Confidence            3456889999999999987665   12222345556555554 44443   22235999999999999999999999999


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .+|        ...+.++..... .        .+++++.|.++++|.+..          ....+. .|...|+.++.-
T Consensus        98 kgH--------~snVC~ls~~~~-~--------~~iSgSWD~TakvW~~~~----------l~~~l~-gH~asVWAv~~l  149 (745)
T KOG0301|consen   98 KGH--------KSNVCSLSIGED-G--------TLISGSWDSTAKVWRIGE----------LVYSLQ-GHTASVWAVASL  149 (745)
T ss_pred             hcc--------ccceeeeecCCc-C--------ceEecccccceEEecchh----------hhcccC-Ccchheeeeeec
Confidence            985        466666665432 1        689999999999998643          223344 477889999888


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  251 (341)
                      |++ .+++|+.|.+|++|.-  ++.+..+.+|.         ..|+.+++.   +...+++++.||.|++|++. ++. +
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl---~~~~flScsNDg~Ir~w~~~-ge~-l  212 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVL---DDSHFLSCSNDGSIRLWDLD-GEV-L  212 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEe---cCCCeEeecCCceEEEEecc-Cce-e
Confidence            877 8899999999999986  66777777754         679999995   34578999999999999995 465 8


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..+.+|+.-+.++...+++..+++++.|++++||+..  ++.+.+.-+ ...|+++.+-++|. +++|+.||.||||...
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            8899999999999988888899999999999999986  777777655 66899999988885 5678899999999876


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      .
T Consensus       289 k  289 (745)
T KOG0301|consen  289 K  289 (745)
T ss_pred             c
Confidence            4

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.1e-26  Score=167.66  Aligned_cols=241  Identities=15%  Similarity=0.140  Sum_probs=179.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      .|+.+++.|++||++.....  +-.+++.++.+|.+++.-++|..  ...|.+||+++.||+|.||.-++++..+.... 
T Consensus        24 krlATcsSD~tVkIf~v~~n--~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-   98 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNN--GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENGRWTKAYEH-   98 (299)
T ss_pred             ceeeeecCCccEEEEEEcCC--CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCCchhhhhhh-
Confidence            58999999999999999987  33367789999999999888774  23467999999999999999887754332221 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-  173 (341)
                                                                                      ..|...|.+++|.|. 
T Consensus        99 ----------------------------------------------------------------~~h~~SVNsV~waphe  114 (299)
T KOG1332|consen   99 ----------------------------------------------------------------AAHSASVNSVAWAPHE  114 (299)
T ss_pred             ----------------------------------------------------------------hhhcccceeecccccc
Confidence                                                                            024456677777664 


Q ss_pred             -CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CC-----------CEEEEEeCCCeEE
Q 019405          174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DH-----------RKFVAGTNDHQVR  240 (341)
Q Consensus       174 -~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-----------~~l~~~~~d~~i~  240 (341)
                       |-.|++++.||.|.+.+.+....-.      .......|+-.|++++|.|.. .|           +.|++|+.|..|+
T Consensus       115 ygl~LacasSDG~vsvl~~~~~g~w~------t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk  188 (299)
T KOG1332|consen  115 YGLLLACASSDGKVSVLTYDSSGGWT------TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK  188 (299)
T ss_pred             cceEEEEeeCCCcEEEEEEcCCCCcc------chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence             5678899999999999887531100      001112244568899995421 12           5799999999999


Q ss_pred             EEEcCCCC-ceeEEEEecCCCeEEEEEcCCC----ceEEEEeCCCCEEEEECCCC--eE-EeEEeccccCceeEEEecCC
Q 019405          241 LYDTSAQR-RPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG--KL-LGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       241 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~--~~-~~~~~~~~~~~i~~~~~~~~  312 (341)
                      ||+...++ ...+.+.+|.+.|+.++|.|.-    .+|++++.||++.||..+.-  .. ...+... ...++++.|+..
T Consensus       189 iW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~s  267 (299)
T KOG1332|consen  189 IWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSLS  267 (299)
T ss_pred             eeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEEEEecc
Confidence            99998753 2234588999999999999954    68999999999999976521  11 1112222 678999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 019405          313 LPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~~  331 (341)
                      |++|+.++.|+.|.+|.-+
T Consensus       268 Gn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  268 GNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccEEEEecCCcEEEEEEeC
Confidence            9999999999999999754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.9e-26  Score=194.44  Aligned_cols=212  Identities=15%  Similarity=0.105  Sum_probs=169.5

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..|.+|...|..++||.++-     |++++.|.+||+|++...++++.+..         .+-++|+++.+.++.     
T Consensus       363 ~ef~GHt~DILDlSWSKn~f-----LLSSSMDKTVRLWh~~~~~CL~~F~H---------ndfVTcVaFnPvDDr-----  423 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSKNNF-----LLSSSMDKTVRLWHPGRKECLKVFSH---------NDFVTCVAFNPVDDR-----  423 (712)
T ss_pred             hhhhccchhheecccccCCe-----eEeccccccEEeecCCCcceeeEEec---------CCeeEEEEecccCCC-----
Confidence            44567888888888887654     99999999999999999999988874         488999999998875     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                        ++++|+-||.++||++         .+..|-.|.-. ..-|+++++.|+|+..++|+.+|.+++|+....+.......
T Consensus       424 --yFiSGSLD~KvRiWsI---------~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  424 --YFISGSLDGKVRLWSI---------SDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             --cEeecccccceEEeec---------CcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence              9999999999999998         45577778753 47899999999999999999999999999988776655443


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      .....-...+. .|+.+.|+| .+...+++.+.|..|||||.++.. ++..+++...  .-....|+.+|++|++++.|.
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p-~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFP-GDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeccCccccCc-eeeeeEecC-CCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            32222222233 699999963 334467777899999999998744 4777776432  234568999999999999999


Q ss_pred             CEEEEECC
Q 019405          281 DLASVDIR  288 (341)
Q Consensus       281 ~i~iwd~~  288 (341)
                      .|++|+..
T Consensus       569 ~VYiW~~~  576 (712)
T KOG0283|consen  569 WVYIWKND  576 (712)
T ss_pred             eEEEEeCC
Confidence            99999974

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.8e-26  Score=176.91  Aligned_cols=205  Identities=16%  Similarity=0.151  Sum_probs=164.6

Q ss_pred             eeEEEcccceeEEEEeeecc------c-cccc---CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTK------V-SAES---SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~------~-~~~~---~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                      .+++|+.|-.|+|.+++..-      . ..+.   .--.|+.+- .|-.+|.++.|+|....|++++.|++|++||+...
T Consensus       126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~  204 (430)
T KOG0640|consen  126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT  204 (430)
T ss_pred             EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEEeccCCCeEEEEecccH
Confidence            89999999999999987321      1 0111   111233322 35688999999999999999999999999999764


Q ss_pred             ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE--EEecCCCeEEEEEcCCCce
Q 019405          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFN  272 (341)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~  272 (341)
                      ...+.++.-.       ....|.++.|  +|.|.+|+.|..-.++++||+.+.++-+..  -..|.+.|+++.+++.+++
T Consensus       205 saKrA~K~~q-------d~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l  275 (430)
T KOG0640|consen  205 SAKRAFKVFQ-------DTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL  275 (430)
T ss_pred             HHHHHHHHhh-------ccceeeeEee--cCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence            3333222211       1255999999  789999999999999999999986642221  2348899999999999999


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          273 IYIGNGSGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .++|+.||.|+|||--+++++.++. .|....|.+..|..+++++++.+.|..|++|.+.+++++.++
T Consensus       276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999999999999999999998886 454568999999999999999999999999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-26  Score=172.95  Aligned_cols=228  Identities=18%  Similarity=0.192  Sum_probs=183.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~   93 (341)
                      .++.+++.|=+-|+|+.-..     ..++.| +|..-|..++|+.|.+    +|++|+.+..+||||++..+ +..++.+
T Consensus        72 ~~aasaaadftakvw~a~tg-----delhsf-~hkhivk~~af~~ds~----~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTG-----DELHSF-EHKHIVKAVAFSQDSN----YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             hhhhhhcccchhhhhhhhhh-----hhhhhh-hhhheeeeEEecccch----hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            44555556666688887765     455566 6788899999999888    89999999999999997533 3344444


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                              |.+.|..+.|...+.        .+++.+.|+++++||.....        .+..  +....+|.++.++++
T Consensus       142 --------htg~Ir~v~wc~eD~--------~iLSSadd~tVRLWD~rTgt--------~v~s--L~~~s~VtSlEvs~d  195 (334)
T KOG0278|consen  142 --------HTGGIRTVLWCHEDK--------CILSSADDKTVRLWDHRTGT--------EVQS--LEFNSPVTSLEVSQD  195 (334)
T ss_pred             --------CCCcceeEEEeccCc--------eEEeeccCCceEEEEeccCc--------EEEE--EecCCCCcceeeccC
Confidence                    567888888887777        89999999999999987544        3333  345678999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      |.+|.++. .+.|++||..+...+..++.+.          .|.+...  +|+...+++|++|..++.||..+++. +..
T Consensus       196 G~ilTia~-gssV~Fwdaksf~~lKs~k~P~----------nV~SASL--~P~k~~fVaGged~~~~kfDy~TgeE-i~~  261 (334)
T KOG0278|consen  196 GRILTIAY-GSSVKFWDAKSFGLLKSYKMPC----------NVESASL--HPKKEFFVAGGEDFKVYKFDYNTGEE-IGS  261 (334)
T ss_pred             CCEEEEec-CceeEEeccccccceeeccCcc----------ccccccc--cCCCceEEecCcceEEEEEeccCCce-eee
Confidence            98877654 4589999999988888777653          3777788  78889999999999999999999886 555


Q ss_pred             E-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          254 F-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       254 ~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                      + ++|-++|.|+.|+|+|...++|+.||+|+||....++.
T Consensus       262 ~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  262 YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            4 88999999999999999999999999999998765543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=3.4e-25  Score=174.83  Aligned_cols=305  Identities=34%  Similarity=0.517  Sum_probs=222.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCc-cc---eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGV-PK---VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      +.+..+...|..+-..+.....+. .+   .+..--.....+..++|..++.  .+.|.....|..+.....+.......
T Consensus        17 ~~~~Vg~~tG~lkgi~~~~~t~~~~~~nls~~~s~~~~~~ris~l~~~~d~~--tevl~~r~~~~~~~~~~~~E~~~~s~   94 (412)
T KOG3881|consen   17 MPLYVGTHTGQLKGIYLKRNTVISEDENLSALNSGVDELDRISSLLFGVDGE--TEVLNARSADDDLPKFVIEEFEISSS   94 (412)
T ss_pred             cceEEeccccccccceEeeccccccchhhhhhhcccchhhhhhhheeecCCc--eeEeeccccCcccccccccCCccccc
Confidence            345566666666555554431000 00   0000112334455666665544  22333333666666666665554444


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      .....  ..+...++|..+...          ++.|++|..+|.+.+|.+.....-    +..+..|.  .+..+..+.-
T Consensus        95 ~~~~~--~~~l~~~~I~gl~~~----------dg~Litc~~sG~l~~~~~k~~d~h----ss~l~~la--~g~g~~~~r~  156 (412)
T KOG3881|consen   95 LDDAK--TVSLGTKSIKGLKLA----------DGTLITCVSSGNLQVRHDKSGDLH----SSKLIKLA--TGPGLYDVRQ  156 (412)
T ss_pred             ccccc--ccccccccccchhhc----------CCEEEEEecCCcEEEEeccCCccc----cccceeee--cCCceeeecc
Confidence            31100  011233555555542          338999999999999998754321    22333333  3456667766


Q ss_pred             cCCC-CEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          171 DISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       171 ~~~~-~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ++.. .++++|+..  +.+++||+++.++++..++..+..+++..|.|++++.|.+......|++++.-+++++||.+.+
T Consensus       157 ~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q  236 (412)
T KOG3881|consen  157 TDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ  236 (412)
T ss_pred             CCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc
Confidence            6644 556669998  8899999999999999999999999999999999999964333789999999999999999999


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      .+|+..+...+.+++++...|.+++|++|..-+.+..||++.++.+.. +++. .+.|.++..+|.+++|+++|.|..||
T Consensus       237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvR  315 (412)
T KOG3881|consen  237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVR  315 (412)
T ss_pred             CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCCceEEeeccceeEE
Confidence            999999999999999999999999999999999999999999999877 7776 89999999999999999999999999


Q ss_pred             EEEcCCCceeeeec
Q 019405          327 FWDIKTRQLLSAVC  340 (341)
Q Consensus       327 iwd~~~~~~~~~~~  340 (341)
                      |+|+++.+++..+|
T Consensus       316 IhD~ktrkll~kvY  329 (412)
T KOG3881|consen  316 IHDIKTRKLLHKVY  329 (412)
T ss_pred             Eeecccchhhhhhh
Confidence            99999999988877

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-24  Score=166.32  Aligned_cols=259  Identities=12%  Similarity=0.101  Sum_probs=197.2

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +.+++-||+||+|++.+.  |.... .....|++++.+++|+.|++    .+++|+.|+.+++||+.+++. ..+..   
T Consensus        43 ~~A~SWD~tVR~wevq~~--g~~~~-ka~~~~~~PvL~v~Wsddgs----kVf~g~~Dk~~k~wDL~S~Q~-~~v~~---  111 (347)
T KOG0647|consen   43 LAAGSWDGTVRIWEVQNS--GQLVP-KAQQSHDGPVLDVCWSDDGS----KVFSGGCDKQAKLWDLASGQV-SQVAA---  111 (347)
T ss_pred             EEecccCCceEEEEEecC--Ccccc-hhhhccCCCeEEEEEccCCc----eEEeeccCCceEEEEccCCCe-eeeee---
Confidence            457788999999999996  32222 23556899999999999887    799999999999999999854 44444   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                           |+.++..+.|++...-.      .|++|+.|.+++.||.+...        ++...+  -.+.+++++.  ...+
T Consensus       112 -----Hd~pvkt~~wv~~~~~~------cl~TGSWDKTlKfWD~R~~~--------pv~t~~--LPeRvYa~Dv--~~pm  168 (347)
T KOG0647|consen  112 -----HDAPVKTCHWVPGMNYQ------CLVTGSWDKTLKFWDTRSSN--------PVATLQ--LPERVYAADV--LYPM  168 (347)
T ss_pred             -----cccceeEEEEecCCCcc------eeEecccccceeecccCCCC--------eeeeee--ccceeeehhc--cCce
Confidence                 56888899998765522      88999999999999987433        333333  3456666654  3457


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEE
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFD  255 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~  255 (341)
                      ++++..+..|.+|+++++...........       .-.++|++.+  .+....+.|+-+|.+-+..+..+. ..-..++
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpL-------k~Q~R~va~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPL-------KWQTRCVACF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcc-------cceeeEEEEE--ecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence            88888999999999987544332221111       1347888884  566666999999999999888742 1244566


Q ss_pred             ecCC---------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          256 FRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       256 ~~~~---------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      .|..         +|++++|+|.-..|++.+.||+..+||-+....+.+.+.| ..+|++..|+.+|.+++-+
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEE
Confidence            6652         5788999999899999999999999999888888888887 8999999999999987754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.1e-26  Score=181.46  Aligned_cols=247  Identities=13%  Similarity=0.166  Sum_probs=195.8

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      .+..+.+|...|.+++-.+..-   ..+++|+.||.|+|||+.+..+..++..        |.+.+.++.+-.  .    
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~l---s~~aSGs~DG~VkiWnlsqR~~~~~f~A--------H~G~V~Gi~v~~--~----  120 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKL---STVASGSCDGEVKIWNLSQRECIRTFKA--------HEGLVRGICVTQ--T----  120 (433)
T ss_pred             chhhccccccccchhhcCcchh---hhhhccccCceEEEEehhhhhhhheeec--------ccCceeeEEecc--c----
Confidence            3456678999999888555442   2599999999999999999999999887        456777777755  3    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                          .+++++.|.+++.|.++..         .++.+..  ...+..++-+..+..++++|.+  |.|||.....++..+
T Consensus       121 ----~~~tvgdDKtvK~wk~~~~---------p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sm  183 (433)
T KOG0268|consen  121 ----SFFTVGDDKTVKQWKIDGP---------PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSM  183 (433)
T ss_pred             ----ceEEecCCcceeeeeccCC---------cceeeec--cccccccccccccccccccCce--eeecccccCCcccee
Confidence                8999999999999997642         3344332  3456666666677888988864  999999877777666


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .-..         ..|.++.|  +|. ...|+++..|+.|.+||+++.. |++.+.. ...-+.++|+|++-.+++|+.|
T Consensus       184 swG~---------Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~ED  250 (433)
T KOG0268|consen  184 SWGA---------DSISSVKF--NPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAANED  250 (433)
T ss_pred             ecCC---------CceeEEec--CCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeecccc
Confidence            5533         44899999  554 4567777799999999999865 5665543 2456789999988889999999


Q ss_pred             CCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          280 GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       280 g~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      ..++.||++.. +++...++| .+.|.+++|+|.|+-+++||.|.+|+||.++.+..
T Consensus       251 ~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  251 HNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             ccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence            99999999875 457778888 89999999999999999999999999999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1e-23  Score=155.06  Aligned_cols=257  Identities=15%  Similarity=0.167  Sum_probs=187.7

Q ss_pred             cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +.|.++++|++||+.+.    +|++|+.|.+|++.-+....+..  .+ .+..+.-|++.+..+++.+...    +.. .
T Consensus        86 khhkgsiyc~~ws~~ge----liatgsndk~ik~l~fn~dt~~~--~g-~dle~nmhdgtirdl~fld~~~----s~~-~  153 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGE----LIATGSNDKTIKVLPFNADTCNA--TG-HDLEFNMHDGTIRDLAFLDDPE----SGG-A  153 (350)
T ss_pred             cccCccEEEEEecCccC----eEEecCCCceEEEEecccccccc--cC-cceeeeecCCceeeeEEecCCC----cCc-e
Confidence            45889999999887766    99999999999998665432211  11 1122334778899999987654    122 4


Q ss_pred             eEEEcccceeEEE--EeeecccccccCCceEEEEEeecCCceEEE-EecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          126 LLTCTTKGKASMR--SIEVTKVSAESSCSTVKSWNVCASGTIAFS-KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       126 l~~~~~~g~~~i~--~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      ++.....|.-.||  +...+.        ....+.- |.+.|..+ .|  ++-++++|+.|.+|++||++-...+..+.+
T Consensus       154 il~s~gagdc~iy~tdc~~g~--------~~~a~sg-htghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~  222 (350)
T KOG0641|consen  154 ILASAGAGDCKIYITDCGRGQ--------GFHALSG-HTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN  222 (350)
T ss_pred             EEEecCCCcceEEEeecCCCC--------cceeecC-CcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC
Confidence            4433334444444  432221        2333332 34445444 34  478999999999999999998877776654


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i  282 (341)
                      ..... .+ ....|.+++.  .|.|++|++|-.|....+||++.+. +++.+..|...|.++.|+|...++++++.|..|
T Consensus       223 ~~~~~-gl-essavaav~v--dpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~i  297 (350)
T KOG0641|consen  223 DFHDG-GL-ESSAVAAVAV--DPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI  297 (350)
T ss_pred             cccCC-Cc-ccceeEEEEE--CCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence            32211 00 1256888999  8999999999999999999999765 699999999999999999999999999999999


Q ss_pred             EEEECCCC---e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          283 ASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       283 ~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ++-|++..   + .+.....| .+.+..+.|+|..--+++.+.|.++.+|-++
T Consensus       298 kltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  298 KLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEeecccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99998732   2 23334455 8888899999999999999999999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=182.26  Aligned_cols=274  Identities=14%  Similarity=0.094  Sum_probs=188.9

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .+.+|...|..+++-+.+.    .|++|+.|.+|+.||+..-. ..+.++...+    .....+.++.|....+      
T Consensus       162 ~l~hgtk~Vsal~~Dp~Ga----R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~Tg~------  227 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGA----RFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSVTGD------  227 (641)
T ss_pred             eccCCceEEEEeeecCCCc----eeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecCCCC------
Confidence            5667788888888776666    89999999999999996421 1222322211    1234555666655555      


Q ss_pred             cceeEEEcccceeEEEEeeeccccc-ccCCceEEEEEe--ecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCc-ee
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNV--CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE-KI  197 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~-~~~~~~v~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~-~~  197 (341)
                        .+++.+.....+++|-+...... ...|..|+-...  .|-..++|.+|+|.. +.+++++.||++++||+.+.+ ++
T Consensus       228 --~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  228 --QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             --eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence              78888878888888743222110 112222221111  123467889999965 678999999999999998643 33


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ce-eEEEEecCC--CeEEEEEcCCCceE
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RP-VMSFDFRET--PIKAVAEEPDSFNI  273 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~-~~~~~~~~~--~v~~~~~~~~~~~l  273 (341)
                      ..++.....    .....++.++|  ++++++||+|+.||.|.+|+..... .+ ...-..|..  .|+++.||++|++|
T Consensus       306 qVik~k~~~----g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L  379 (641)
T KOG0772|consen  306 QVIKTKPAG----GKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL  379 (641)
T ss_pred             eEEeeccCC----CcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence            333322111    12245889999  9999999999999999999975432 22 233345766  89999999999999


Q ss_pred             EEEeCCCCEEEEECCCCe-EEeEEecc-ccCceeEEEecCCCCEEEEEe------CCCcEEEEEcCCCceeeee
Q 019405          274 YIGNGSGDLASVDIRTGK-LLGCFIGK-CSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++-+.|+++++||+++.+ ++....+- ..-+-+.++|||+.++|++|.      ..|.+.+||..+-..+++|
T Consensus       380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence            999999999999999764 45544432 123567899999999999986      4568999999887777765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8e-25  Score=168.51  Aligned_cols=255  Identities=15%  Similarity=0.134  Sum_probs=183.1

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      ..+++|...|++++|+.|++    +|++++.|++|+||++++...  .+.++..      -.-+..+.+.+-+....   
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK----~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n------ve~dhpT~V~FapDc~s---  146 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGK----KLATISGDRSIRLWDVRDFENKEHRCIRQN------VEYDHPTRVVFAPDCKS---  146 (420)
T ss_pred             hhhhccCCceeeeEEcCCCc----eeEEEeCCceEEEEecchhhhhhhhHhhcc------ccCCCceEEEECCCcce---
Confidence            35678999999999999888    899999999999999986321  1222211      12234455555555442   


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEE-----eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                          .+++......+.+|.+....+..  ..-...-|+     -.|...+..+-....+++|++++.|..|.+|+++ |+
T Consensus       147 ----~vv~~~~g~~l~vyk~~K~~dG~--~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  147 ----VVVSVKRGNKLCVYKLVKKTDGS--GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             ----EEEEEccCCEEEEEEeeecccCC--CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence                66667777789999887665432  111222233     2234556677777788999999999999999998 88


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCeEEEEEcC
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~  268 (341)
                      .+..+......         -+..+.  +|+|+++++++.---|++|..--++       ..+..+++|...|..++|++
T Consensus       220 ~L~~idtnq~~---------n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn  288 (420)
T KOG2096|consen  220 LLQSIDTNQSS---------NYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN  288 (420)
T ss_pred             eeeeecccccc---------ccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC
Confidence            87776654321         334456  8999999999999999999863211       12677899999999999999


Q ss_pred             CCceEEEEeCCCCEEEEECCC-------------C---------eEE-------------------eEE-----------
Q 019405          269 DSFNIYIGNGSGDLASVDIRT-------------G---------KLL-------------------GCF-----------  296 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~-------------~---------~~~-------------------~~~-----------  296 (341)
                      +...+++.+.||+++|||+.-             +         +++                   +.+           
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~  368 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL  368 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhH
Confidence            999999999999999998641             1         000                   000           


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ..-|...|.+++|+++|+++++++ |..++++.
T Consensus       369 e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  369 EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            011467899999999999999985 66788876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.2e-25  Score=177.91  Aligned_cols=251  Identities=15%  Similarity=0.131  Sum_probs=200.5

Q ss_pred             CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405           25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD  104 (341)
Q Consensus        25 ~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  104 (341)
                      .+.+|.+.+..    .+ +.+---.+++.+++-++.+.    +|+.|+-.|.|++|.+.+|..+..+..        |-.
T Consensus        62 ~l~vw~i~k~~----~~-~q~~v~Pg~v~al~s~n~G~----~l~ag~i~g~lYlWelssG~LL~v~~a--------HYQ  124 (476)
T KOG0646|consen   62 LLHVWEILKKD----QV-VQYIVLPGPVHALASSNLGY----FLLAGTISGNLYLWELSSGILLNVLSA--------HYQ  124 (476)
T ss_pred             cccccccCchh----hh-hhhcccccceeeeecCCCce----EEEeecccCcEEEEEeccccHHHHHHh--------hcc
Confidence            45677766652    11 11223457788888666666    788887999999999999999998876        447


Q ss_pred             ceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEecCC--CCEEEEee
Q 019405          105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGG  181 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~  181 (341)
                      .++|+.+..++.        .+++++.||.+.+|.+..--.+... ...+++.|. .|.-+|+.+...+.  ..++++++
T Consensus       125 ~ITcL~fs~dgs--------~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS  195 (476)
T KOG0646|consen  125 SITCLKFSDDGS--------HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTAS  195 (476)
T ss_pred             ceeEEEEeCCCc--------EEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccceEEEec
Confidence            899999988777        9999999999999998654332211 345677887 47788999988764  46899999


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-------------
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------------  248 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------  248 (341)
                      .|.++++||+..+..+..+..+          ..+.+++.  +|.+..+..|+.+|.|.+.++....             
T Consensus       196 ~D~t~k~wdlS~g~LLlti~fp----------~si~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~  263 (476)
T KOG0646|consen  196 EDRTIKLWDLSLGVLLLTITFP----------SSIKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE  263 (476)
T ss_pred             CCceEEEEEeccceeeEEEecC----------CcceeEEE--cccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence            9999999999999988887764          45899999  8999999999999999988875422             


Q ss_pred             --ceeEEEEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          249 --RPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       249 --~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                        ..+..+.+|..  +|+|++++-||.+|++|+.||.+.|||+.+.++++++... .++|+.+.+.|-.+
T Consensus       264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLER  332 (476)
T ss_pred             ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeecccc
Confidence              12556777877  9999999999999999999999999999999999888754 78999999976543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=4e-25  Score=186.08  Aligned_cols=250  Identities=14%  Similarity=0.200  Sum_probs=195.3

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceee-Eeeeeccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQREE  118 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  118 (341)
                      ++...+.+|...+..+++....     .+++++.||++++|+...++.+......      .+.+-+.+ +++.+.++  
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~------~~~g~i~~~i~y~e~~~--   71 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFE------GPKGFIANSICYAESDK--   71 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecc------cCcceeeccceeccccC--
Confidence            4555678898888877755433     5999999999999998776665533221      12344444 55554332  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                           ..+++++.|+.+.+|.+....        ++.... .|...|.+++...++. +++|+.|.++++|...  +...
T Consensus        72 -----~~l~~g~~D~~i~v~~~~~~~--------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~  134 (745)
T KOG0301|consen   72 -----GRLVVGGMDTTIIVFKLSQAE--------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVY  134 (745)
T ss_pred             -----cceEeecccceEEEEecCCCC--------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhhc
Confidence                 179999999999999876443        344433 4778899999887777 9999999999999874  3444


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      .+++|         +..|.++...  |++ .+++|+.|.+|++|.-.  + .++++.+|.+-|+.+++-+++ .+++++.
T Consensus       135 ~l~gH---------~asVWAv~~l--~e~-~~vTgsaDKtIklWk~~--~-~l~tf~gHtD~VRgL~vl~~~-~flScsN  198 (745)
T KOG0301|consen  135 SLQGH---------TASVWAVASL--PEN-TYVTGSADKTIKLWKGG--T-LLKTFSGHTDCVRGLAVLDDS-HFLSCSN  198 (745)
T ss_pred             ccCCc---------chheeeeeec--CCC-cEEeccCcceeeeccCC--c-hhhhhccchhheeeeEEecCC-CeEeecC
Confidence            45554         4668898884  455 88999999999999753  3 488999999999999998876 5778999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||.|++|++ +|+.+.++.+| .+-|+++...+++..++++++|++++||+..  ++.+.|
T Consensus       199 Dg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  199 DGSIRLWDL-DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             CceEEEEec-cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence            999999999 79999999998 9999999988888899999999999999987  566554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-24  Score=187.07  Aligned_cols=243  Identities=12%  Similarity=0.102  Sum_probs=193.1

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .|...-+.+++.+++.    +|++++.||.|++|+..+- +.-.++..        +...+.++....          +.
T Consensus        11 aht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~s----------~~   68 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACYS----------NH   68 (933)
T ss_pred             hccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeecc----------cc
Confidence            3666677777776666    8999999999999987654 22222221        224454444322          28


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      |++++.++++..+.+....     .++.+..+..    ++.+++++.+|+++|.|+.|-.|++-++.+......+..+. 
T Consensus        69 f~~~s~~~tv~~y~fps~~-----~~~iL~Rftl----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-  138 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGE-----EDTILARFTL----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-  138 (933)
T ss_pred             eEEeeccceEEEeeCCCCC-----ccceeeeeec----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-
Confidence            9999999999999876544     4445555443    78999999999999999999999999999988888888865 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------c-CCCeEEEEEcCCCceEEEEe
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------R-ETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~l~~g~  277 (341)
                              .+|.++.|  +|++++||+.+.||.|++||+.++.. .+.+.+       - ...+..++|+|++..+++..
T Consensus       139 --------apVl~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  139 --------APVLQLSY--DPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             --------CceeeeeE--cCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence                    66999999  89999999999999999999998653 333322       1 34567799999988899999


Q ss_pred             CCCCEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          278 GSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .|+.|++|+..+++....+...+ ...+..+.|+|+|.|||+++.||.|.|||+++
T Consensus       208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99999999999999888876532 34599999999999999999999999999996

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=191.47  Aligned_cols=192  Identities=15%  Similarity=0.230  Sum_probs=159.3

Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      +.+++++..|.+.+||+....     ....+.+|+ +|...+.+++|++ ..++|++|+.||.|++||++..+....+..
T Consensus       101 NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~  174 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKSI-----RNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS  174 (839)
T ss_pred             hhheeecCCCcEEEEecCccc-----cchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence            389999999999999997632     233555665 5788999999987 457899999999999999998766665555


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i  282 (341)
                      ..         ..|..|.|.|. .++.++++...|.+++||++...++...+..|.++|.++.|+|++.+||+|+.|+.|
T Consensus       175 nS---------ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  175 NS---------ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             cc---------hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence            22         55999999744 478999999999999999999888889999999999999999999999999999999


Q ss_pred             EEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEEe--CCCcEEEEEcCCC
Q 019405          283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCG--LDSYLRFWDIKTR  333 (341)
Q Consensus       283 ~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--~dg~v~iwd~~~~  333 (341)
                      +|||..+.+.  +.++.  ...+|.++.|-|..+ +|++++  .|-.|+|||++..
T Consensus       245 kiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             EEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999986654  44443  367999999999877 577766  5779999999753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=2e-23  Score=169.98  Aligned_cols=273  Identities=14%  Similarity=0.138  Sum_probs=203.4

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      ++.....|.+..|.....  +..+....|+.++ ..|.+++|..++.     +++|..+|.|.||+..+.+..+....  
T Consensus       215 liit~Gk~H~~Fw~~~~~--~l~k~~~~fek~ekk~Vl~v~F~engd-----viTgDS~G~i~Iw~~~~~~~~k~~~a--  285 (626)
T KOG2106|consen  215 LIITCGKGHLYFWTLRGG--SLVKRQGIFEKREKKFVLCVTFLENGD-----VITGDSGGNILIWSKGTNRISKQVHA--  285 (626)
T ss_pred             EEEEeCCceEEEEEccCC--ceEEEeeccccccceEEEEEEEcCCCC-----EEeecCCceEEEEeCCCceEEeEeee--
Confidence            334446788899977765  4334444454432 5678888888888     99999999999999977666555543  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc---cccCCceEEEE---------------
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---AESSCSTVKSW---------------  157 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~---~~~~~~~v~~~---------------  157 (341)
                            |++.+-+++.....         .|++|..|..+..|+-+..+..   -..+.|.+|..               
T Consensus       286 ------H~ggv~~L~~lr~G---------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~  350 (626)
T KOG2106|consen  286 ------HDGGVFSLCMLRDG---------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF  350 (626)
T ss_pred             ------cCCceEEEEEecCc---------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence                  66888888876543         6788999999999994433221   00111222211               


Q ss_pred             -------------EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405          158 -------------NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (341)
Q Consensus       158 -------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (341)
                                   -..|......++.+|+.+.+++++.|+.+++|+  ..+..+.....          .++.|+.|  +
T Consensus       351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~f--h  416 (626)
T KOG2106|consen  351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADF--H  416 (626)
T ss_pred             EEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeec--c
Confidence                         112335678889999999999999999999999  44444443322          44889999  7


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCc
Q 019405          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS  303 (341)
Q Consensus       225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~  303 (341)
                      |.+ .++.|...|...+.|.++ +..+. +...+.++++++|+|+|.+||.|+.|+.|+||-+.. +........++..+
T Consensus       417 psg-~va~Gt~~G~w~V~d~e~-~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~  493 (626)
T KOG2106|consen  417 PSG-VVAVGTATGRWFVLDTET-QDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP  493 (626)
T ss_pred             Ccc-eEEEeeccceEEEEeccc-ceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence            788 999999999999999998 33344 443488999999999999999999999999998864 44444454444689


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      |+.+.|++|+++|.+-+-|-.|..|..
T Consensus       494 ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             eEEeeecCCCceEEeccCceEEEEEcc
Confidence            999999999999999999999999943

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1e-24  Score=184.57  Aligned_cols=258  Identities=16%  Similarity=0.207  Sum_probs=195.6

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCC----C--------C---CCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDS----G--------A---QPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      ++++.|+.+|+|+|++.++-..+.++......    +        +   ++..-+-.-...|++...       .+....
T Consensus       271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~-------klscVY  343 (1080)
T KOG1408|consen  271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD-------KLSCVY  343 (1080)
T ss_pred             ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc-------eEEEEE
Confidence            48999999999999999987777666531100    0        0   000001111122332222       777788


Q ss_pred             ccceeEEEEeeeccc-------------------------------------ccccCCceEEEEEeecC-----------
Q 019405          131 TKGKASMRSIEVTKV-------------------------------------SAESSCSTVKSWNVCAS-----------  162 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~-----------  162 (341)
                      .|+.+.|||++.-+.                                     .+++.|++|++|+....           
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            888899998765432                                     14678899999987541           


Q ss_pred             ------------------------------------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          163 ------------------------------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       163 ------------------------------------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                                                          -.+.+++++|++++||+|...|.+++|++...+....++.|.  
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe--  501 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE--  501 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc--
Confidence                                                147899999999999999999999999998887777776654  


Q ss_pred             ccCccCCeeeeEEEEEecC--CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEE------------------
Q 019405          207 SLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------------------  266 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------------------  266 (341)
                             ..|.|+.|. .|  ..++|++++.|+.|.+||....-.+++++.+|...|+++.|                  
T Consensus       502 -------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  502 -------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             -------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence                   669999994 22  34789999999999999987654456666666655555555                  


Q ss_pred             -------------------------------cCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCC
Q 019405          267 -------------------------------EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTL  313 (341)
Q Consensus       267 -------------------------------~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~  313 (341)
                                                     .|..+++++++.|..|+|||+++++..+.|++.  +++....+...|.|
T Consensus       574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg  653 (1080)
T KOG1408|consen  574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG  653 (1080)
T ss_pred             heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc
Confidence                                           444558899999999999999999999999864  25678889999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          314 PIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       314 ~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      .+|++.+.|.++.++|..+|+|+.++|
T Consensus       654 iY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  654 IYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             cEEEEeecCCceEEEEeccchhhhhhc
Confidence            999999999999999999999999876

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.1e-24  Score=164.19  Aligned_cols=277  Identities=14%  Similarity=0.200  Sum_probs=210.1

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC----CCc--c---
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL----NGD--L---   87 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~----~~~--~---   87 (341)
                      +-+++.|.+-++|.++..     +++.+|.+|.++|+++.|.+.+.    ++++++.|++-.||...    ..+  .   
T Consensus       163 ~gtASADhTA~iWs~Esg-----~CL~~Y~GH~GSVNsikfh~s~~----L~lTaSGD~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  163 CGTASADHTARIWSLESG-----ACLATYTGHTGSVNSIKFHNSGL----LLLTASGDETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             eeecccccceeEEeeccc-----cceeeecccccceeeEEeccccc----eEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence            334566667789998887     77889999999999999987555    89999999999999721    100  0   


Q ss_pred             ---hheee---ccCC-----------------CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           88 ---RVAIS---NAGD-----------------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        88 ---~~~~~---~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                         ..+..   .+..                 ..+.+|...+.+..|+....        .+++++.|.+..+||++.+.
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~--------Q~vTaSWDRTAnlwDVEtge  305 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ--------QMVTASWDRTANLWDVETGE  305 (481)
T ss_pred             CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc--------eeeeeeccccceeeeeccCc
Confidence               00000   0000                 01123455666667776666        89999999999999998665


Q ss_pred             cccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                              .+.... .|....+.+.-+|..+++++.+.|.+.++||++.. ..+..|++|.         ..|+++.|  
T Consensus       306 --------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF--  365 (481)
T KOG0300|consen  306 --------VVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVF--  365 (481)
T ss_pred             --------eecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEE--
Confidence                    333332 45667888888999999999999999999999843 3345566654         66999999  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-----Eec
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FIG  298 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~~  298 (341)
                      . .+..+++|+.|.+|++||+++...|+.++.. .++++.++.+..+..|+.--.+..|++||+...+ +..     -++
T Consensus       366 ~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqg  442 (481)
T KOG0300|consen  366 N-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQG  442 (481)
T ss_pred             e-cCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCcccccc
Confidence            4 4568899999999999999998888888874 4689999999888899988888899999996433 333     346


Q ss_pred             cccCceeEEEecCCCC--EEEEEeCCCcEEEEEcCCCc
Q 019405          299 KCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~  334 (341)
                      | ..-|.+++|..+.+  -|++++.|..+.=|++....
T Consensus       443 H-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  443 H-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             c-ceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            6 78899999987665  58899999999999987643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.6e-23  Score=159.39  Aligned_cols=262  Identities=10%  Similarity=0.120  Sum_probs=184.5

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      +|..-+.++.|.+.+.    ++|+++.|++|+|||..+.........++    ..|++.+..+.|.++.-.      ..+
T Consensus        11 ~h~DlihdVs~D~~GR----RmAtCSsDq~vkI~d~~~~s~~W~~Ts~W----rah~~Si~rV~WAhPEfG------qvv   76 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGR----RMATCSSDQTVKIWDSTSDSGTWSCTSSW----RAHDGSIWRVVWAHPEFG------QVV   76 (361)
T ss_pred             CCcceeeeeeecccCc----eeeeccCCCcEEEEeccCCCCceEEeeeE----EecCCcEEEEEecCcccc------ceE
Confidence            4777788888776665    89999999999999975543332222211    136788999999877643      389


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEe-----ecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCce---
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEK---  196 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~---  196 (341)
                      ++++.|+++.||.=.....     +..-+.|..     .....|+.+.|.|  -|-.+|+++.||.|+||+.-..-.   
T Consensus        77 A~cS~Drtv~iWEE~~~~~-----~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   77 ATCSYDRTVSIWEEQEKSE-----EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             EEEecCCceeeeeeccccc-----ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            9999999999997432221     111122322     2356899999988  467899999999999998754221   


Q ss_pred             ---eeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC-----CeEEEEEcCCCCc---eeEEEEecCCCeEEE
Q 019405          197 ---IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND-----HQVRLYDTSAQRR---PVMSFDFRETPIKAV  264 (341)
Q Consensus       197 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d-----~~i~iwd~~~~~~---~~~~~~~~~~~v~~~  264 (341)
                         ..++......  .-.+.....|+.|+|+. ...+|+.|+.+     +.++||......+   .+..+..|..+|+++
T Consensus       152 W~Lq~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di  229 (361)
T KOG2445|consen  152 WTLQHEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI  229 (361)
T ss_pred             chhhhhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence               1222210000  00123457788995432 23567777765     4789998765431   255667899999999


Q ss_pred             EEcCCC----ceEEEEeCCCCEEEEECCCC--------------------eEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          265 AEEPDS----FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       265 ~~~~~~----~~l~~g~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      +|.|+-    .+||+++.|| |+||.++..                    +.+..+..| .+.|+.+.|+-.|..|++.|
T Consensus       230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStG  307 (361)
T KOG2445|consen  230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTG  307 (361)
T ss_pred             eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecC
Confidence            999953    6799999999 999998731                    345556777 89999999999999999999


Q ss_pred             CCCcEEEEEcC
Q 019405          321 LDSYLRFWDIK  331 (341)
Q Consensus       321 ~dg~v~iwd~~  331 (341)
                      .||.||+|...
T Consensus       308 dDG~VRLWkan  318 (361)
T KOG2445|consen  308 DDGCVRLWKAN  318 (361)
T ss_pred             CCceeeehhhh
Confidence            99999999754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=6.9e-24  Score=187.23  Aligned_cols=271  Identities=13%  Similarity=0.124  Sum_probs=202.8

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEc--cCCeEEEeeCCCCc-chheee--ccCCC-CCCCCCCceeeEeeeecccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGD-LRVAIS--NAGDS-GAQPEDDGIVGLHLFKRQRE  117 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~--~dg~i~iw~~~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~  117 (341)
                      .|-.|....   .|+.|-+|+|..++||+  .|+.++||+.+.-- ......  ..... ....|.+.+.|+.|.+... 
T Consensus         7 ~wv~H~~~~---IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-   82 (942)
T KOG0973|consen    7 TWVNHNEKS---IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-   82 (942)
T ss_pred             cccccCCee---EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-
Confidence            455555544   57777788888999999  89999999875310 000000  00001 1124667888888777766 


Q ss_pred             ccccccceeEEEcccceeEEEEeeecccc----cccCCceEEEEE-----eecCCceEEEEecCCCCEEEEeeCCCeEEE
Q 019405          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVS----AESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFGGKGVEVNV  188 (341)
Q Consensus       118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~----~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i  188 (341)
                             +|++|++|..+.||........    +......+.-|.     ..|...|..+.|+|++.++++++.|++|.+
T Consensus        83 -------~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   83 -------YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII  155 (942)
T ss_pred             -------eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence                   9999999999999998751111    111122222232     247889999999999999999999999999


Q ss_pred             EECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec------CCCeE
Q 019405          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIK  262 (341)
Q Consensus       189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~  262 (341)
                      ||..+.+.+..+..|.         ..|..+.|  .|-|++|++-+.|++|++|+..+... .+.+..+      ..-..
T Consensus       156 wn~~tF~~~~vl~~H~---------s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  156 WNAKTFELLKVLRGHQ---------SLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGI-EKSITKPFEESPLTTFFL  223 (942)
T ss_pred             Eccccceeeeeeeccc---------ccccceEE--CCccCeeeeecCCceEEEEEccccee-eEeeccchhhCCCcceee
Confidence            9999998888888865         56899999  99999999999999999999776432 4444433      23467


Q ss_pred             EEEEcCCCceEEEEeC----CCCEEEEECCCCeEEeEEeccccCceeEEEecCC------C-------C----EEEEEeC
Q 019405          263 AVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT------L-------P----IIASCGL  321 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~------~-------~----~l~s~~~  321 (341)
                      .+.|||||++|++...    -..+.|.+-.+.+.-..|-+| .+++.++.|+|.      .       .    .+|+||.
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            8999999999998653    345889998888888899999 889999999982      1       1    6889999


Q ss_pred             CCcEEEEEcCCCceeee
Q 019405          322 DSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       322 dg~v~iwd~~~~~~~~~  338 (341)
                      |++|.||.....+++..
T Consensus       303 DrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFV  319 (942)
T ss_pred             CccEEEEecCCCCchhh
Confidence            99999999987777654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=161.76  Aligned_cols=255  Identities=15%  Similarity=0.169  Sum_probs=200.0

Q ss_pred             eeecCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405            6 TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (341)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~   85 (341)
                      .+.+.++....+++|+.|.+|+++++...     +-+..+-.|.+.++++.|.+..+..  .|++|+.||.|.+|+....
T Consensus        45 sitavAVs~~~~aSGssDetI~IYDm~k~-----~qlg~ll~HagsitaL~F~~~~S~s--hLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   45 SITALAVSGPYVASGSSDETIHIYDMRKR-----KQLGILLSHAGSITALKFYPPLSKS--HLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ceeEEEecceeEeccCCCCcEEEEeccch-----hhhcceeccccceEEEEecCCcchh--heeeecCCCcEEEEEcCCe
Confidence            34555666677889999999999999987     3334455689999999999877532  6999999999999999998


Q ss_pred             cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (341)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i  165 (341)
                      .++..++.|        .+.++.+...+..+        .-++.+.|+.++.|++-.+..+        .+.++.+  .-
T Consensus       118 ~~~~slK~H--------~~~Vt~lsiHPS~K--------LALsVg~D~~lr~WNLV~Gr~a--------~v~~L~~--~a  171 (362)
T KOG0294|consen  118 ELLKSLKAH--------KGQVTDLSIHPSGK--------LALSVGGDQVLRTWNLVRGRVA--------FVLNLKN--KA  171 (362)
T ss_pred             EEeeeeccc--------ccccceeEecCCCc--------eEEEEcCCceeeeehhhcCccc--------eeeccCC--cc
Confidence            888888874        46688888888877        8899999999999998766532        2333332  23


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      ..+.|+|.|.+++.++.+ .|-+|.+++......+..+          ..+.++.|.   ++..|++|..|+.|++||..
T Consensus       172 t~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~----------~r~l~~~~l---~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP----------KRILCATFL---DGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             eeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc----------ccceeeeec---CCceEEEecCCceEEEeccC
Confidence            348999999999988877 6999999887776666554          336777773   67899999999999999998


Q ss_pred             CCCceeEEEEecCCCeEEEEE--cCCCceEEEEeCCCCEEEEECCCC-----eEEeEEeccccCceeEEEec
Q 019405          246 AQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTG-----KLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ... +...+.+|...|.++.+  .|++.+|++++.||.|++||++..     +++..+..  ...++|+...
T Consensus       238 s~~-~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~--~~RltCl~~~  306 (362)
T KOG0294|consen  238 SDT-PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT--NVRLTCLRVK  306 (362)
T ss_pred             CCc-cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec--CCccceeeeh
Confidence            744 68999999999999884  578899999999999999999865     34444433  4556666543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=8.2e-24  Score=177.27  Aligned_cols=232  Identities=14%  Similarity=0.165  Sum_probs=189.9

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .|++|. ...|++|+..+++.......        +++.++++.|.....        .|++|..+|.+.|||+...+  
T Consensus       190 ~laVal-g~~vylW~~~s~~v~~l~~~--------~~~~vtSv~ws~~G~--------~LavG~~~g~v~iwD~~~~k--  250 (484)
T KOG0305|consen  190 VLAVAL-GQSVYLWSASSGSVTELCSF--------GEELVTSVKWSPDGS--------HLAVGTSDGTVQIWDVKEQK--  250 (484)
T ss_pred             eEEEEe-cceEEEEecCCCceEEeEec--------CCCceEEEEECCCCC--------EEEEeecCCeEEEEehhhcc--
Confidence            477776 56899999998886555444        247788888877766        99999999999999987655  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                            .++.....|...|-+++|+  +..+.+|+.|+.|..+|++..+.... +..|         ...|..+.|  ++
T Consensus       251 ------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H---------~qeVCgLkw--s~  311 (484)
T KOG0305|consen  251 ------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGH---------RQEVCGLKW--SP  311 (484)
T ss_pred             ------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcc---------cceeeeeEE--CC
Confidence                  4455555577899999998  67899999999999999998766555 4443         356999999  89


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-CceEEEEe--CCCCEEEEECCCCeEEeEEeccccC
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      ++.++|+|+.|+.+.|||... ..+...+..|...|.+++|+|- ..+||+|+  .|+.|++||..+++.+..+..  .+
T Consensus       312 d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gs  388 (484)
T KOG0305|consen  312 DGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GS  388 (484)
T ss_pred             CCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CC
Confidence            999999999999999999965 4468889999999999999994 46788765  589999999999999998876  57


Q ss_pred             ceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|.+|.|++..+-|+++.  .++.|.||+..+.+.+..+
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l  427 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL  427 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence            899999999987665543  5678999999987776654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=184.02  Aligned_cols=270  Identities=14%  Similarity=0.160  Sum_probs=195.1

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCce---eEEEeccCCCCCceEEEEccCCeEEEeeCCC---CcchheeeccCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNC---VLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGD   96 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~   96 (341)
                      .-.++++.+.... -..++...++..+..-+   -|.+.   .-..++|||++.+|.|.+||+..   .+.+..+..   
T Consensus        59 rs~lklyai~~~~-~~~~~~~~~k~kqn~~~S~~DVkW~---~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E---  131 (839)
T KOG0269|consen   59 RSLLKLYAINPND-FSEKCNHRFKTKQNKFYSAADVKWG---QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE---  131 (839)
T ss_pred             ccceeeEeeCccc-CCcceeeecccccceeeehhhcccc---cchhhhheeecCCCcEEEEecCccccchhhhHhhh---
Confidence            3344666666552 22234444443332222   23343   22345899999999999999976   444455555   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCC
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEK  175 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~  175 (341)
                           |...+.++.|......       .|++|+.||.+++||+...+        ....+.- ....|..++|+| .+.
T Consensus       132 -----H~Rs~~~ldfh~tep~-------iliSGSQDg~vK~~DlR~~~--------S~~t~~~-nSESiRDV~fsp~~~~  190 (839)
T KOG0269|consen  132 -----HERSANKLDFHSTEPN-------ILISGSQDGTVKCWDLRSKK--------SKSTFRS-NSESIRDVKFSPGYGN  190 (839)
T ss_pred             -----hccceeeeeeccCCcc-------EEEecCCCceEEEEeeeccc--------ccccccc-cchhhhceeeccCCCc
Confidence                 5577888888877665       99999999999999998654        2222222 457899999998 467


Q ss_pred             EEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS  253 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~  253 (341)
                      .++++...|.+.+||++... ....+..|         .++|.|+.|  +|+..+||+|+.|+.|+|||+.+.+ .++.+
T Consensus       191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH---------~GpV~c~nw--hPnr~~lATGGRDK~vkiWd~t~~~~~~~~t  259 (839)
T KOG0269|consen  191 KFASIHDSGYLQLWDLRQPDRCEKKLTAH---------NGPVLCLNW--HPNREWLATGGRDKMVKIWDMTDSRAKPKHT  259 (839)
T ss_pred             eEEEecCCceEEEeeccCchhHHHHhhcc---------cCceEEEee--cCCCceeeecCCCccEEEEeccCCCccceeE
Confidence            89999999999999998643 34445543         477999999  7899999999999999999998643 23444


Q ss_pred             EEecCCCeEEEEEcCCCc-eEEEEe--CCCCEEEEECCCCe-EEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEE
Q 019405          254 FDFRETPIKAVAEEPDSF-NIYIGN--GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFW  328 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~-~l~~g~--~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iw  328 (341)
                      +. ...++.+++|-|..+ +|++++  .|-.|+|||++..- +..++..| ...++.++|.. |...|.+++.||.|...
T Consensus       260 In-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  260 IN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             Ee-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccHHHHh
Confidence            44 347899999999774 455555  47789999998653 45667777 89999999966 44589999999998766


Q ss_pred             EcCCC
Q 019405          329 DIKTR  333 (341)
Q Consensus       329 d~~~~  333 (341)
                      .++++
T Consensus       338 ~~kna  342 (839)
T KOG0269|consen  338 LFKNA  342 (839)
T ss_pred             hhhcc
Confidence            65543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.7e-22  Score=147.62  Aligned_cols=252  Identities=15%  Similarity=0.147  Sum_probs=189.3

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCC---------CCCCCCceeeEeeeeccccc
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG---------AQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  118 (341)
                      ....+..++|-+.+.    +.++|+...++||-....-..  ....|....         ...|.+.|.|.+|.+...  
T Consensus        31 dsqairav~fhp~g~----lyavgsnskt~ric~yp~l~~--~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--  102 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGG----LYAVGSNSKTFRICAYPALID--LRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--  102 (350)
T ss_pred             chhheeeEEecCCCc----eEEeccCCceEEEEccccccC--cccccccccCCCeEEeeeccccCccEEEEEecCccC--
Confidence            445677777665554    899999999999976542111  111111111         123678899998887777  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC----CCCEEEEee-CCCeEEEEECCC
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGG-KGVEVNVWDLDK  193 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~d~~v~i~d~~~  193 (341)
                            .+++++.|..+++...+.....   ..+.-..+++ |.+.|..++|-.    .+.+|++++ .|..|++-|..+
T Consensus       103 ------liatgsndk~ik~l~fn~dt~~---~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen  103 ------LIATGSNDKTIKVLPFNADTCN---ATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             ------eEEecCCCceEEEEeccccccc---ccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence                  9999999999998876543221   2223334454 567888888843    345677655 466788888889


Q ss_pred             CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--c-----CCCeEEEEE
Q 019405          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R-----ETPIKAVAE  266 (341)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~-----~~~v~~~~~  266 (341)
                      ++....+.+|...         |.++-   +-++-.+++|+.|.+|++||++-..+ +..+..  |     .+.|.+++.
T Consensus       173 g~~~~a~sghtgh---------ilaly---swn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  173 GQGFHALSGHTGH---------ILALY---SWNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             CCcceeecCCccc---------EEEEE---EecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEE
Confidence            9998888887643         54442   23788999999999999999997554 555532  2     357999999


Q ss_pred             cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       267 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .|.|++|++|-.|....+||++.++.++.+..| ...|.++.|+|...++++++.|..|++=|++
T Consensus       240 dpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            999999999999999999999999999999998 9999999999999999999999999999986

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4.9e-26  Score=192.41  Aligned_cols=228  Identities=20%  Similarity=0.308  Sum_probs=188.4

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +++....+-.+++|+.+......              ..+.++..-....        .++.|+.+..+-+|.+....  
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~~~hs--------------aav~~lk~~~s~r--------~~~~Gg~~~k~~L~~i~kp~--   61 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREFVAHS--------------AAVGCLKIRKSSR--------SLVTGGEDEKVNLWAIGKPN--   61 (825)
T ss_pred             ccceeeeeeccccccchhhhhhh--------------hhhceeeeeccce--------eeccCCCceeeccccccCCc--
Confidence            45555566778888875432222              2333444422222        78899999999999876433  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                            .+.-+. .|..+|.++.|+++..+|++|+.+|+|++||++.++.++.+.++.         ..+.++.|  +|-
T Consensus        62 ------~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------~~~~sv~f--~P~  123 (825)
T KOG0267|consen   62 ------AITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------LNITSVDF--HPY  123 (825)
T ss_pred             ------hhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---------cCcceeee--ccc
Confidence                  222233 467899999999999999999999999999999999888888875         44788889  889


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      +.+++.|+.|+.+++||.+... +.+.+.+|...+..++|+|+|++++.|+.|..++|||+..|+.+..|..| +..+..
T Consensus       124 ~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~s  201 (825)
T KOG0267|consen  124 GEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQS  201 (825)
T ss_pred             eEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccc
Confidence            9999999999999999999644 48889999999999999999999999999999999999999999999998 999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      +.|+|..-++++||.|++|++||+++.+.+..
T Consensus       202 le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  202 LEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             cccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            99999999999999999999999998776643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=2.1e-23  Score=174.33  Aligned_cols=302  Identities=13%  Similarity=0.156  Sum_probs=207.5

Q ss_pred             CCCCC--ceeeeecCCCCeEEEEEecCccC-ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc
Q 019405           10 PGCPP--LRALTFDSLGLIKVIEARGEHGG-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (341)
Q Consensus        10 ~~~~~--~~~~~~~~~g~i~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~   86 (341)
                      +.+|.  ..+..++++|.|.+++....... ...-+..|..|...+.-+.+.+...    .|++++.|.++++||+.+++
T Consensus        58 s~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~----~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   58 SAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGES----LLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCce----eEEEccCCceeeeeeeccce
Confidence            34554  34677899999999887765211 0111345667889988888777444    79999999999999999888


Q ss_pred             chhe--eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------ccccC-----
Q 019405           87 LRVA--ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAESS-----  150 (341)
Q Consensus        87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---------~~~~~-----  150 (341)
                      +...  +.+        |...+-++++.+.+..       .|++|+.||.+.|||+.....         .++..     
T Consensus       134 l~G~~~~~G--------H~~SvkS~cf~~~n~~-------vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  134 LVGGRLNLG--------HTGSVKSECFMPTNPA-------VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             eecceeecc--------cccccchhhhccCCCc-------ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            7766  444        4566777777666554       899999999999999876541         01111     


Q ss_pred             -----CceEEEEEeecCCceEE---EEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCcc--CCeeeeEE
Q 019405          151 -----CSTVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIF--TPTWFTSA  219 (341)
Q Consensus       151 -----~~~v~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~  219 (341)
                           ...++.|.+. ...|..   +-+..|...||+++. |+.|++||+++..............+...  ....+.++
T Consensus       199 pskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CCchhhccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence                 1123334332 233444   455568889998887 99999999997654443332211111110  11235566


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCC--eEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeE
Q 019405          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGC  295 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~  295 (341)
                      ..  ...|.+|.+.+.|+.|+.|++.... .|+..+.++...  -..-..+|++.+|++|+.|...++|.+.+.+. ...
T Consensus       278 ~l--DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~  355 (720)
T KOG0321|consen  278 IL--DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL  355 (720)
T ss_pred             Ee--cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence            66  6778888888889999999998743 345555544221  11234689999999999999999999987654 455


Q ss_pred             EeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCc
Q 019405          296 FIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       296 ~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +.+| .-.|++++|.|.. .-+++++.|..+++|++..+-
T Consensus       356 l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  356 LLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             hhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            6677 8899999999854 357777999999999997653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.9e-24  Score=177.46  Aligned_cols=263  Identities=13%  Similarity=0.142  Sum_probs=186.7

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..|.+|.+.|.+++..+.    |.+|++|+.||+||||.+.+|.++.++..-         +.|.|++|.+....     
T Consensus       394 lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~~vaw~P~~~~-----  455 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIRSVAWNPLSDL-----  455 (733)
T ss_pred             eeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeec---------ceeEEEEecCCCCc-----
Confidence            457789999998886654    559999999999999999999999998862         56777777665543     


Q ss_pred             cceeEEEcccceeEEEEeeecccc----------c----ccCCceEEEEEe--------------ecCCceEEEEecCCC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVS----------A----ESSCSTVKSWNV--------------CASGTIAFSKVDISE  174 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~----------~----~~~~~~v~~~~~--------------~~~~~i~~~~~~~~~  174 (341)
                        .+++++.+..+.|.+..++...          +    ...+..+-.|.-              .+...|..+.|+..|
T Consensus       456 --~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  456 --CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             --eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence              4555555555666665544210          0    112223334432              234566677777777


Q ss_pred             CEEEEeeCC---CeEEEEECCCCceeeec----------CCCCCCc---------c-------------CccCCeeeeEE
Q 019405          175 KFSLFGGKG---VEVNVWDLDKCEKIWTA----------KPPPKNS---------L-------------GIFTPTWFTSA  219 (341)
Q Consensus       175 ~~l~~~~~d---~~v~i~d~~~~~~~~~~----------~~~~~~~---------~-------------~~~~~~~v~~~  219 (341)
                      .+|++...+   ..|.|+++........|          ..|....         .             .+....+|..+
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~m  613 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSM  613 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeee
Confidence            777765432   34666666532211100          0010000         0             01123688999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC------CC---
Q 019405          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------TG---  290 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~------~~---  290 (341)
                      +.  +|.|..|+.++.|+.+..||+.-...|.+.+..|...+++++|++.-.++++|+.||++.+|.-.      ..   
T Consensus       614 si--hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli  691 (733)
T KOG0650|consen  614 SI--HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI  691 (733)
T ss_pred             ee--cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence            99  78999999999999999999998878899999999999999999999999999999999998532      11   


Q ss_pred             eEEeEEeccccCc----eeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          291 KLLGCFIGKCSGS----IRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       291 ~~~~~~~~~~~~~----i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      -++..+++| ...    |....|||...+|++++.||+|++|
T Consensus       692 VPlK~L~gH-~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  692 VPLKRLRGH-EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeccCc-eeecccceEeecccCCCceEEecCCCceEEee
Confidence            246677787 443    8888999999999999999999998

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-23  Score=168.83  Aligned_cols=246  Identities=15%  Similarity=0.157  Sum_probs=179.9

Q ss_pred             CCCceEEEEccCCeEEEeeCCCCcc-hhee------------eccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           63 QNDPLLAVARKNGLTDILNPLNGDL-RVAI------------SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        63 ~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      ..|+|+|.|+.|..|.|||+.=... +..+            ........+.|.+.+..+.|...-.+       .|++|
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-------VLaSg  262 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-------VLASG  262 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-------eEEec
Confidence            3467999999999999999862111 1111            01112223456677777777654443       99999


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCC---CceeeecCCCCC
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPK  205 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~  205 (341)
                      +.|.++++||++..+.        ..... .+++.|.+++|+|. ..+|++|+.|++|.+.|.+.   ....+.+.    
T Consensus       263 saD~TV~lWD~~~g~p--------~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~----  329 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKP--------KSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD----  329 (463)
T ss_pred             CCCceEEEEEcCCCCc--------ceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec----
Confidence            9999999999987653        22322 57889999999985 57899999999999999984   22223332    


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLAS  284 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i  284 (341)
                              +.|..++|. +.....++++..||+|+-+|+|....++.+++.|.++|.++++++.- .++++++.|+.|++
T Consensus       330 --------g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  330 --------GEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             --------cceEEEEec-CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence                    448889995 23455677888999999999999878899999999999999998755 57889999999999


Q ss_pred             EECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 019405          285 VDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       285 wd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      |++.....  +..-... -+...|.++.|+-. +++.|+..+.++|||+.+...+.+
T Consensus       401 w~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  401 WKFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EeecCCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            99874332  2111111 23466777888766 677888888899999998776554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=3.4e-23  Score=160.11  Aligned_cols=287  Identities=13%  Similarity=0.172  Sum_probs=209.1

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccC--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .+++......+.+++....  +..++++++..  ++..-+.++++.+.....++||+|+.-|.|+|.|+.++++...+.+
T Consensus        56 ~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g  133 (385)
T KOG1034|consen   56 QVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG  133 (385)
T ss_pred             ceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec
Confidence            3444444455666666554  33345566543  6667777888888776678999999999999999999999998887


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEec
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVD  171 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~  171 (341)
                              |+..|..+.+.+...+       +++++++|+.+++|+++...        .+.++--  .|...|.+++|+
T Consensus       134 --------hG~sINeik~~p~~~q-------lvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  134 --------HGGSINEIKFHPDRPQ-------LVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             --------cCccchhhhcCCCCCc-------EEEEecCCceEEEEeccCCe--------EEEEecccccccCcEEEEEEc
Confidence                    4577888888777654       89999999999999998544        6666643  356789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeee---------------cCCCCCCc----cCccCCeeeeEEEEEecCCCCEEEE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWT---------------AKPPPKNS----LGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~---------------~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      +++.+|++++.|.+|++|++...+....               ++......    ..--|.++|.|+.|    -|+++++
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw----~gd~ilS  266 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW----FGDFILS  266 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH----Hhhheee
Confidence            9999999999999999999984322111               11111100    11226678888888    3689999


Q ss_pred             EeCCCeEEEEEcCCCCc-------------eeEEEEecCCCeEEEEE--cCCCceEEEEeCCCCEEEEECCCCeEEe--E
Q 019405          233 GTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAE--EPDSFNIYIGNGSGDLASVDIRTGKLLG--C  295 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~  295 (341)
                      -+-++.|..|..-..+.             .+..+......|+.+.|  .|-++.||.|...|.|++||++..++..  +
T Consensus       267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt  346 (385)
T KOG1034|consen  267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT  346 (385)
T ss_pred             cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence            88899999998722111             12233334455666554  6778999999999999999998765521  1


Q ss_pred             Ee-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          296 FI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       296 ~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +. ......|...+|+.|+.+|+..+.|++|.-||..
T Consensus       347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            11 1124689999999999999999999999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.7e-24  Score=175.06  Aligned_cols=250  Identities=14%  Similarity=0.111  Sum_probs=194.9

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC---cchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      |..-|..++.|....    ++.||+ .|-|+|||+...   ..+..+...      .-+..+.+..+++...        
T Consensus       418 HGEvVcAvtIS~~tr----hVyTgG-kgcVKVWdis~pg~k~PvsqLdcl------~rdnyiRSckL~pdgr--------  478 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISQPGNKSPVSQLDCL------NRDNYIRSCKLLPDGR--------  478 (705)
T ss_pred             cCcEEEEEEecCCcc----eeEecC-CCeEEEeeccCCCCCCcccccccc------CcccceeeeEecCCCc--------
Confidence            666677777776555    688887 789999999642   122222221      1234566666666666        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .|++|++-.++.|||+.....       .|+.--.......+.++++||.+..+++..||.|.|||+.+...++.|++|.
T Consensus       479 tLivGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  479 TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             eEEeccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            899999999999999864321       2222111122457788999999999999999999999999999999999875


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                               ..+.|+..  +++|..|.+|+-|++||.||++++.+ ++... ..+.|.++.++|.+.+|++|-.++.+.+
T Consensus       552 ---------DGascIdi--s~dGtklWTGGlDntvRcWDlregrq-lqqhd-F~SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  552 ---------DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQ-LQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             ---------CCceeEEe--cCCCceeecCCCccceeehhhhhhhh-hhhhh-hhhhheecccCCCccceeeecccCcEEE
Confidence                     66899999  89999999999999999999998765 43333 3467999999999999999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .... +...+.+..| ++-|.++.|.+.|+++++.+.|..+..|.+.-|..+..
T Consensus       619 lh~s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  619 LHTS-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             EecC-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence            8875 4445556666 89999999999999999999999999999988876654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=5.7e-23  Score=156.77  Aligned_cols=214  Identities=9%  Similarity=0.091  Sum_probs=161.9

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-h--eeeccCC----CCCCCCCCceeeEeeeecccccc
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-V--AISNAGD----SGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      .|.++|+.+..-+   ..|+|+++|+.||.|.|||+++.... .  .+..+..    .....|.-.|..+.|++.+..  
T Consensus        41 ~HgGsvNsL~id~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG--  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDL---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG--  115 (397)
T ss_pred             cCCCccceeeecc---ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc--
Confidence            4778888777554   34579999999999999999864311 0  0111111    111235567888999998774  


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCce
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~  196 (341)
                           .+.+++.|+++++||.+...        ....|..  ++.|.+-+++|-   ..++|+|..+-.|++-|+..|..
T Consensus       116 -----mFtssSFDhtlKVWDtnTlQ--------~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~  180 (397)
T KOG4283|consen  116 -----MFTSSSFDHTLKVWDTNTLQ--------EAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF  180 (397)
T ss_pred             -----eeecccccceEEEeecccce--------eeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence                 89999999999999987544        4444544  567888888873   45788899999999999999999


Q ss_pred             eeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEE--------------EecCCCe
Q 019405          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETPI  261 (341)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~--------------~~~~~~v  261 (341)
                      ...+.+|.         ..|.++.|  +|... .|++|+.||.|++||++........+              ..|.+.+
T Consensus       181 sH~LsGHr---------~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  181 SHTLSGHR---------DGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             eeeecccc---------CceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence            99999876         55999999  55544 57789999999999998742223333              3466789


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      ..++|+.++.++++.+.|..+++|+..+|+
T Consensus       250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eeeeecccchhhhhccCccceEEeecccCc
Confidence            999999999999999999999999987653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.1e-23  Score=169.88  Aligned_cols=269  Identities=13%  Similarity=0.087  Sum_probs=203.2

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccC--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      ++++| ..|-||||++...  |....+..+.-  .+.-+......+|+.    -|++|+.-.++.|||+..-...-..+.
T Consensus       433 hVyTg-GkgcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL~pdgr----tLivGGeastlsiWDLAapTprikael  505 (705)
T KOG0639|consen  433 HVYTG-GKGCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPRIKAEL  505 (705)
T ss_pred             eeEec-CCCeEEEeeccCC--CCCCccccccccCcccceeeeEecCCCc----eEEeccccceeeeeeccCCCcchhhhc
Confidence            34444 5688999999886  33334444433  334444444555544    799999999999999975433221111


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      ..      ..-....++..+..+        ..+++..||.|.|||+....        .|+.+.- |...+.||.+++|
T Consensus       506 ts------sapaCyALa~spDak--------vcFsccsdGnI~vwDLhnq~--------~VrqfqG-htDGascIdis~d  562 (705)
T KOG0639|consen  506 TS------SAPACYALAISPDAK--------VCFSCCSDGNIAVWDLHNQT--------LVRQFQG-HTDGASCIDISKD  562 (705)
T ss_pred             CC------cchhhhhhhcCCccc--------eeeeeccCCcEEEEEcccce--------eeecccC-CCCCceeEEecCC
Confidence            00      001112233333333        88999999999999997544        5666653 5677899999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      |..|-+|+.|++|+.||+++++++......          ..|.++.+  .|++.+|++|-.++.+.+......+  ...
T Consensus       563 GtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~--cP~~dWlavGMens~vevlh~skp~--kyq  628 (705)
T KOG0639|consen  563 GTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPE--KYQ  628 (705)
T ss_pred             CceeecCCCccceeehhhhhhhhhhhhhhh----------hhheeccc--CCCccceeeecccCcEEEEecCCcc--cee
Confidence            999999999999999999998776544332          44888888  7899999999999999888776543  456


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+...+.  .+.|.++.++.|.++++||+.|....+|.+
T Consensus       629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            677999999999999999999999999999999988888877664  689999999999999999999988888765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-23  Score=168.86  Aligned_cols=218  Identities=17%  Similarity=0.192  Sum_probs=161.4

Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc---CCceEEEEEeecCCceEEEEecCC-CCEE
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES---SCSTVKSWNVCASGTIAFSKVDIS-EKFS  177 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~---~~~~v~~~~~~~~~~i~~~~~~~~-~~~l  177 (341)
                      |++.+..+.+.+....       .+++.+..+.+.||+....+.....   ..-.+++.  .|.+.-+.+.|++. .-.+
T Consensus       123 h~gEVnRaRymPQnp~-------iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPN-------IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             CCccchhhhhCCCCCc-------EEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeE
Confidence            4566666666665553       7777888999999998776532211   11112222  23445677899875 4578


Q ss_pred             EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCceeEEEEe
Q 019405          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDF  256 (341)
Q Consensus       178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~  256 (341)
                      ++++.|++|.+||+.........  ......-..|...|..++|+ .-+..+|++++.|+.+.|||.|+ ...+.+....
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~--~~p~~~~~~h~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKV--VDPKTIFSGHEDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             eeccCCCcEEEEeccccccCCcc--ccceEEeecCCcceehhhcc-ccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            99999999999999753321000  00011112245779999996 34667899999999999999995 3445777888


Q ss_pred             cCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405          257 RETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       257 ~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~  332 (341)
                      |..+|.|++|+|- +..||+|+.|++|.+||+|+. +++.++.+| ...|..+.|+|.. ..||+++.|+.+.+||+..
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999999999994 577889999999999999975 568899998 9999999999966 4899999999999999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=8.3e-22  Score=160.67  Aligned_cols=231  Identities=16%  Similarity=0.139  Sum_probs=166.0

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      +.-.+++++++|.|.+|.....     +..+....|++.|.++.+..++.     |++|+.|.+|..|| .+-+.++..+
T Consensus       256 engdviTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr~Gt-----llSGgKDRki~~Wd-~~y~k~r~~e  324 (626)
T KOG2106|consen  256 ENGDVITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLRDGT-----LLSGGKDRKIILWD-DNYRKLRETE  324 (626)
T ss_pred             CCCCEEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEecCcc-----EeecCccceEEecc-cccccccccc
Confidence            4456889999999999987443     44444448999999999999888     88899999999999 3333333332


Q ss_pred             ccCCCC---------------------------------CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEE
Q 019405           93 NAGDSG---------------------------------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (341)
Q Consensus        93 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~  139 (341)
                      ......                                 ...|.+....++..+...        .+++++.|+.+.+|+
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~--------q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN--------QLLTCGQDKHVRLWN  396 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh--------heeeccCcceEEEcc
Confidence            210000                                 011223333344333333        667777777777776


Q ss_pred             eeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE
Q 019405          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (341)
Q Consensus       140 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (341)
                       +           .-.+|......++.|+.|+|.| .++.|+..|...+.|.++...+..-.. .         .+++++
T Consensus       397 -~-----------~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---------~~ls~v  453 (626)
T KOG2106|consen  397 -D-----------HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---------EQLSVV  453 (626)
T ss_pred             -C-----------CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---------CceEEE
Confidence             1           1234555556789999999999 999999999999999998554433222 2         559999


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                      +|  +|+|.+||.|+.|+.|++|.+......+... +.+.++|+.+.|++|+++|.+-+.|-.|-.|..
T Consensus       454 ~y--sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  454 RY--SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             EE--cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            99  9999999999999999999988755434333 234589999999999999999999999999943

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4.2e-23  Score=157.46  Aligned_cols=218  Identities=18%  Similarity=0.199  Sum_probs=166.7

Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc--ccccCCceEEEEEe----ecCCceEEEEecC-
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNV----CASGTIAFSKVDI-  172 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--~~~~~~~~v~~~~~----~~~~~i~~~~~~~-  172 (341)
                      .+|.+.+..+..-+....       ++++|+.||.+.+||++....  .++.--..+.+...    .|.-.|..+.|-| 
T Consensus        40 r~HgGsvNsL~id~tegr-------ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGR-------YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             ccCCCccceeeeccccce-------EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            356788888877665543       999999999999999987653  22111112222221    2334578888877 


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~  251 (341)
                      |..++.+++-|.++++||..+.+....|..+.          .|++-++.|-. ...++++|..+-.|++-|+..+.. -
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~----------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-s  181 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG----------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-S  181 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCc----------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-e
Confidence            66788899999999999999988887777543          36666662211 356889999999999999999886 8


Q ss_pred             EEEEecCCCeEEEEEcCCCce-EEEEeCCCCEEEEECCCC-eEEeEEecc-------------ccCceeEEEecCCCCEE
Q 019405          252 MSFDFRETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTG-KLLGCFIGK-------------CSGSIRSIARHPTLPII  316 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~i~iwd~~~~-~~~~~~~~~-------------~~~~i~~~~~~~~~~~l  316 (341)
                      +.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+..|             |.+.|+.++|..++.++
T Consensus       182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            999999999999999997754 678999999999999854 233333222             37889999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCce
Q 019405          317 ASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       317 ~s~~~dg~v~iwd~~~~~~  335 (341)
                      ++++.|..+++|+..+|+-
T Consensus       262 ~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             hhccCccceEEeecccCcc
Confidence            9999999999999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=5.6e-23  Score=161.62  Aligned_cols=237  Identities=12%  Similarity=0.196  Sum_probs=171.3

Q ss_pred             CceeeeecCCCCeEEEEEecC-----------ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405           14 PLRALTFDSLGLIKVIEARGE-----------HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~   82 (341)
                      ..-+.+.++.|.|++|++...           +....+++.++.+|...-+.+.||+....   .|++|..-+.|++|..
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g---~LlsGDc~~~I~lw~~  241 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG---RLLSGDCVKGIHLWEP  241 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc---ccccCccccceEeeee
Confidence            445678899999999998752           11233556777778877778888773332   3888888888888887


Q ss_pred             CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (341)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~  162 (341)
                      .+|.....  .                                                 .         +   + +.|.
T Consensus       242 ~~g~W~vd--~-------------------------------------------------~---------P---f-~gH~  257 (440)
T KOG0302|consen  242 STGSWKVD--Q-------------------------------------------------R---------P---F-TGHT  257 (440)
T ss_pred             ccCceeec--C-------------------------------------------------c---------c---c-cccc
Confidence            66443110  0                                                 0         0   0 1245


Q ss_pred             CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ..|-.++|+|. ...|++|+.||+|+|||++.+.....+..       ..|..-|+.+.|  +....+|++|+.||+++|
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-------kAh~sDVNVISW--nr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-------KAHNSDVNVISW--NRREPLLASGGDDGTLSI  328 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-------eccCCceeeEEc--cCCcceeeecCCCceEEE
Confidence            67778889885 46889999999999999998733221111       113456999999  777779999999999999


Q ss_pred             EEcCCC--CceeEEEEecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCC-------------------eEEeEEecc
Q 019405          242 YDTSAQ--RRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTG-------------------KLLGCFIGK  299 (341)
Q Consensus       242 wd~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~~  299 (341)
                      ||++..  .+|+..++.|..+|+++.|+|. ...|++++.|..|.|||+..-                   +++..-++ 
T Consensus       329 wDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-  407 (440)
T KOG0302|consen  329 WDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-  407 (440)
T ss_pred             EEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-
Confidence            999964  3579999999999999999995 468889999999999998521                   12332233 


Q ss_pred             ccCceeEEEecCCCC-EEEEEeCCCcEEEEE
Q 019405          300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWD  329 (341)
Q Consensus       300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd  329 (341)
                       ...+..+.|+++-+ +|++.+.|| +.||.
T Consensus       408 -Qke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  408 -QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             -hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence             46788999999776 788888888 45553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.3e-22  Score=167.03  Aligned_cols=246  Identities=18%  Similarity=0.193  Sum_probs=197.1

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      ....+.++|++....    .||.+-.||.|.||++..+-.. ..+.+       +.+..+-+++|. ...        +|
T Consensus        24 ~Ps~I~slA~s~kS~----~lAvsRt~g~IEiwN~~~~w~~~~vi~g-------~~drsIE~L~W~-e~~--------RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN----QLAVSRTDGNIEIWNLSNNWFLEPVIHG-------PEDRSIESLAWA-EGG--------RL   83 (691)
T ss_pred             eccceEEEEEeccCC----ceeeeccCCcEEEEccCCCceeeEEEec-------CCCCceeeEEEc-cCC--------eE
Confidence            567899999998887    5999999999999999875433 33333       344667778776 333        89


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      ++.+.+|.+.-||+...+        +.+..+. .++.|++++.+|.+..++.|+.||.++.++...++......-..  
T Consensus        84 FS~g~sg~i~EwDl~~lk--------~~~~~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--  152 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLK--------QKYNIDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR--  152 (691)
T ss_pred             EeecCCceEEEEecccCc--------eeEEecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc--
Confidence            999999999999987544        4455553 57899999999999999999999988888887776654433322  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--------cCCCeEEEEEcCCCceEEEEeC
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--------RETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                           ..+++.++.|  ++++..++.|+.||.|++||...+.. +...+-        ...-|+++.|-.++ .|++|..
T Consensus       153 -----q~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS  223 (691)
T KOG2048|consen  153 -----QKSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS  223 (691)
T ss_pred             -----ccceEEEEEe--cCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence                 1377999999  89999999999999999999998764 331111        12246777776554 7999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .|+|.+||...+.++..+..| .+.|.+++..+++..+++++.|+.|..|...+++
T Consensus       224 ~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  224 AGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             CceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence            999999999999999999998 8999999999999999999999999988877654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-23  Score=187.17  Aligned_cols=285  Identities=13%  Similarity=0.184  Sum_probs=212.3

Q ss_pred             cCCCCeEEEEEecCc-cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC---CcchheeeccCC
Q 019405           21 DSLGLIKVIEARGEH-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---GDLRVAISNAGD   96 (341)
Q Consensus        21 ~~~g~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~   96 (341)
                      +.+..+.+|.++... .+..+.+..+ .....-+.++|+..++....+||.|..||.|.+||...   +.....+..   
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~---  111 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT---  111 (1049)
T ss_pred             ccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh---
Confidence            445666777766541 1212232222 12334456777776664334688899999999999865   222211111   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CC
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EK  175 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~  175 (341)
                        .+.|.+.|..+.+.....+       .+++|+.+|.|.|||++.-....  ..+     .......|.+++|+.. ..
T Consensus       112 --~~~h~G~V~gLDfN~~q~n-------lLASGa~~geI~iWDlnn~~tP~--~~~-----~~~~~~eI~~lsWNrkvqh  175 (1049)
T KOG0307|consen  112 --KSKHTGPVLGLDFNPFQGN-------LLASGADDGEILIWDLNKPETPF--TPG-----SQAPPSEIKCLSWNRKVSH  175 (1049)
T ss_pred             --hcccCCceeeeeccccCCc-------eeeccCCCCcEEEeccCCcCCCC--CCC-----CCCCcccceEeccchhhhH
Confidence              1246789999888776654       89999999999999998743221  111     2234568999999874 46


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCCCceeE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVM  252 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~  252 (341)
                      .|++++.+|.+.|||++..+++..+..+...       ..+..+.|+|+ +...+++++.|.   .|.+||+|....+++
T Consensus       176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             HhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchh
Confidence            7888999999999999998888777766532       33788999532 334566666553   699999998888899


Q ss_pred             EEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEc
Q 019405          253 SFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDI  330 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~  330 (341)
                      .+++|+..|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+... .+++..+.|+|... .++.++.||.|-|+.+
T Consensus       248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeee
Confidence            999999999999999966 89999999999999999999999999986 89999999999887 8899999999999998


Q ss_pred             CCCc
Q 019405          331 KTRQ  334 (341)
Q Consensus       331 ~~~~  334 (341)
                      ..+.
T Consensus       327 ~~~~  330 (1049)
T KOG0307|consen  327 QGTD  330 (1049)
T ss_pred             ecCC
Confidence            7653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=163.11  Aligned_cols=273  Identities=12%  Similarity=0.145  Sum_probs=203.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +++++-||.++++.+.....   ..++.+.-..-++....|.+.++.   .+++++....++.||+++.+..+.-...  
T Consensus       228 llvaG~d~~lrifqvDGk~N---~~lqS~~l~~fPi~~a~f~p~G~~---~i~~s~rrky~ysyDle~ak~~k~~~~~--  299 (514)
T KOG2055|consen  228 LLVAGLDGTLRIFQVDGKVN---PKLQSIHLEKFPIQKAEFAPNGHS---VIFTSGRRKYLYSYDLETAKVTKLKPPY--  299 (514)
T ss_pred             EEEecCCCcEEEEEecCccC---hhheeeeeccCccceeeecCCCce---EEEecccceEEEEeeccccccccccCCC--
Confidence            67888999999999987622   233344335677888888887663   5999999999999999887664432221  


Q ss_pred             CCCCCCCCceeeEeee---eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           97 SGAQPEDDGIVGLHLF---KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                          +.+.  ..+..|   +...        .++..+..|.|.+.......        .+..+.  -.+.|..+.|+.+
T Consensus       300 ----g~e~--~~~e~FeVShd~~--------fia~~G~~G~I~lLhakT~e--------li~s~K--ieG~v~~~~fsSd  355 (514)
T KOG2055|consen  300 ----GVEE--KSMERFEVSHDSN--------FIAIAGNNGHIHLLHAKTKE--------LITSFK--IEGVVSDFTFSSD  355 (514)
T ss_pred             ----Cccc--chhheeEecCCCC--------eEEEcccCceEEeehhhhhh--------hhheee--eccEEeeEEEecC
Confidence                0111  123333   3333        88888888988887654443        222233  3578999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-----CC
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----QR  248 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~  248 (341)
                      ++.|++++.+|.|.+||+++...++.+....          .|....+++++++.+||+|+..|.|.|||..+     ..
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G----------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P  425 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDG----------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP  425 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCcceEEEEeecC----------ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence            9999999999999999999998888777543          34444554488999999999999999999654     22


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeC--CCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCEEEEEeCCCc
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      +|+..+..-...|++++|+|++++||.++.  ...+++-.+.+......|+..  .-+.|++|+|+|.+.+||.|..+|.
T Consensus       426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence            456666655678999999999999988875  577999988877666656543  1346999999999999999999999


Q ss_pred             EEEEEcC
Q 019405          325 LRFWDIK  331 (341)
Q Consensus       325 v~iwd~~  331 (341)
                      |.+|.+.
T Consensus       506 v~l~kL~  512 (514)
T KOG2055|consen  506 VHLFKLH  512 (514)
T ss_pred             eeeEeec
Confidence            9999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-21  Score=164.28  Aligned_cols=278  Identities=14%  Similarity=0.094  Sum_probs=208.3

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      -.+..+-.+|.|.+|++...    |-.... .++.++.+..++|+..+     .|.+.+.+|.|.-||+.+++....+..
T Consensus        38 ~~lAvsRt~g~IEiwN~~~~----w~~~~vi~g~~drsIE~L~W~e~~-----RLFS~g~sg~i~EwDl~~lk~~~~~d~  108 (691)
T KOG2048|consen   38 NQLAVSRTDGNIEIWNLSNN----WFLEPVIHGPEDRSIESLAWAEGG-----RLFSSGLSGSITEWDLHTLKQKYNIDS  108 (691)
T ss_pred             CceeeeccCCcEEEEccCCC----ceeeEEEecCCCCceeeEEEccCC-----eEEeecCCceEEEEecccCceeEEecC
Confidence            33556678899999999886    222222 34578889999999444     499999999999999999988877765


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                              ..+.+-+++..+...        .++.+++||.+..+++......      .-+.+. ...+.+.+++|+|+
T Consensus       109 --------~gg~IWsiai~p~~~--------~l~IgcddGvl~~~s~~p~~I~------~~r~l~-rq~sRvLslsw~~~  165 (691)
T KOG2048|consen  109 --------NGGAIWSIAINPENT--------ILAIGCDDGVLYDFSIGPDKIT------YKRSLM-RQKSRVLSLSWNPT  165 (691)
T ss_pred             --------CCcceeEEEeCCccc--------eEEeecCCceEEEEecCCceEE------EEeecc-cccceEEEEEecCC
Confidence                    347777888877776        8899999996666654322210      011111 23578999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      +..++.|+.||.|++||..++..+..... ....+....+.-|.++.|.   ....|++|..-|+|.+||...+.. ++.
T Consensus       166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gTL-iqS  240 (691)
T KOG2048|consen  166 GTKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGTL-IQS  240 (691)
T ss_pred             ccEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcch-hhh
Confidence            99999999999999999998877662211 1111111123558888885   345899999999999999998775 888


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +..|...|.+++..+++..+++++.|+.|..|...+++.   ....+.+|...|.+++..++  .+++|+.|..+.+-..
T Consensus       241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            888999999999999999999999999999998776643   22233334788999999877  8999999998887654


Q ss_pred             C
Q 019405          331 K  331 (341)
Q Consensus       331 ~  331 (341)
                      .
T Consensus       319 ~  319 (691)
T KOG2048|consen  319 R  319 (691)
T ss_pred             c
Confidence            4

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-21  Score=168.48  Aligned_cols=267  Identities=12%  Similarity=0.061  Sum_probs=194.4

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .-.+++++.||.|++|+-.... ..++.   ...+...+.+++  ....    +|++|+.+++|.+|...+++.-..+..
T Consensus        25 gefi~tcgsdg~ir~~~~~sd~-e~P~t---i~~~g~~v~~ia--~~s~----~f~~~s~~~tv~~y~fps~~~~~iL~R   94 (933)
T KOG1274|consen   25 GEFICTCGSDGDIRKWKTNSDE-EEPET---IDISGELVSSIA--CYSN----HFLTGSEQNTVLRYKFPSGEEDTILAR   94 (933)
T ss_pred             CCEEEEecCCCceEEeecCCcc-cCCch---hhccCceeEEEe--eccc----ceEEeeccceEEEeeCCCCCccceeee
Confidence            3468899999999999877652 22222   211444454444  2233    699999999999999988876555544


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      .+        -++.++++.-...        .++.|+.|-.+++.++....        ..+... .|.++|.++.++|.
T Consensus        95 ft--------lp~r~~~v~g~g~--------~iaagsdD~~vK~~~~~D~s--------~~~~lr-gh~apVl~l~~~p~  149 (933)
T KOG1274|consen   95 FT--------LPIRDLAVSGSGK--------MIAAGSDDTAVKLLNLDDSS--------QEKVLR-GHDAPVLQLSYDPK  149 (933)
T ss_pred             ee--------ccceEEEEecCCc--------EEEeecCceeEEEEeccccc--------hheeec-ccCCceeeeeEcCC
Confidence            21        3455566554444        89999999999999875433        334443 57889999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      +++||+.+-||.|++||+.++.....+....+.. .......+..++|  +|++..++..+.|+.|++|+....+. ...
T Consensus       150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-~~~~s~i~~~~aW--~Pk~g~la~~~~d~~Vkvy~r~~we~-~f~  225 (933)
T KOG1274|consen  150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-EFILSRICTRLAW--HPKGGTLAVPPVDNTVKVYSRKGWEL-QFK  225 (933)
T ss_pred             CCEEEEEecCceEEEEEcccchhhhhcccCCccc-cccccceeeeeee--cCCCCeEEeeccCCeEEEEccCCcee-hee
Confidence            9999999999999999999988777766543321 1111345778899  88988888889999999999988664 444


Q ss_pred             EEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          254 FDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       254 ~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      +..  +...+..++|+|+|+|||+++.+|.|.|||.++-.. +.+    ...|.+++|.|+.+.+-.-...|.
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----KRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----cceeEEEecCCCCCeeEEEeeccc
Confidence            443  444589999999999999999999999999987222 212    568999999999886544433343

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.9e-24  Score=181.82  Aligned_cols=237  Identities=16%  Similarity=0.179  Sum_probs=195.9

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +..|...+.++..-.    .+..+++|+.|..+-+|....-..+..+.+        |+.+|-++.+-....        
T Consensus        24 ~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~--------hespIeSl~f~~~E~--------   83 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLTG--------HESPIESLTFDTSER--------   83 (825)
T ss_pred             hhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheeec--------cCCcceeeecCcchh--------
Confidence            334666676666422    233799999999999999866555555554        567888888776666        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++|+.+|++++||++..+        .++.. ..|...+..+.|+|-+.+.+.|+.|..+++||++..-+...+..+.
T Consensus        84 LlaagsasgtiK~wDleeAk--------~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~  154 (825)
T KOG0267|consen   84 LLAAGSASGTIKVWDLEEAK--------IVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT  154 (825)
T ss_pred             hhcccccCCceeeeehhhhh--------hhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence            89999999999999998554        22221 1345678899999999999999999999999999777777777643


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                               ..+..+.|  +|+|.+++.++.|.+++|||...++. ...|..|+..+.++.|+|..-+++.|+.|+++++
T Consensus       155 ---------~vv~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  155 ---------RVVDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             ---------ceeEEEee--cCCCceeeccCCcceeeeeccccccc-ccccccccccccccccCchhhhhccCCCCceeee
Confidence                     55888999  99999999999999999999998775 8889999999999999999999999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      ||+++.+.+...... ...|.++.|+|++..+++|..+.
T Consensus       223 ~dletfe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  223 WDLETFEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eccceeEEeeccCCc-cCCceeeeecCCceeeecCchhh
Confidence            999999999888876 78999999999999998887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.91  E-value=2.3e-22  Score=151.09  Aligned_cols=266  Identities=15%  Similarity=0.127  Sum_probs=193.4

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      +...++.|...++++.|-..+.     |.+|..-|.|++|++.+...+..++.+       +...++.+...+. +    
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-----L~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~-d----   68 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-----LMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN-D----   68 (323)
T ss_pred             CeeEeccccchheehhhccchh-----hhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC-c----
Confidence            4446668888888887766555     999999999999999998888888753       4466777766654 3    


Q ss_pred             cccceeEEEcccceeEEEEeeeccccc--------------------------------ccCC---------ceEEEEEe
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSA--------------------------------ESSC---------STVKSWNV  159 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~--------------------------------~~~~---------~~v~~~~~  159 (341)
                          .+.+-+.|..+.+|++.++.-.+                                +++.         -.+++-+-
T Consensus        69 ----~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   69 ----SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             ----chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence                67888888999999887632110                                0000         00000000


Q ss_pred             ---ecCCceEEEEecC-CC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc-CccCCeeeeEEEEEecCCCCEEEE
Q 019405          160 ---CASGTIAFSKVDI-SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       160 ---~~~~~i~~~~~~~-~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                         ...+.+.|..+.. .+  -++++|..+|.+.+||+.++..+..++...+... ...|..+|.++.|  .+.-+.=++
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy--as~~~rGis  222 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY--ASSCDRGIS  222 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee--chhhcCCcC
Confidence               0013466666432 22  3566788999999999999877666654433221 2335678999999  554455577


Q ss_pred             EeCCCeEEEEEcCCC--CceeE-EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405          233 GTNDHQVRLYDTSAQ--RRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      |+.+..+..|.+...  ..++. .....+-.|..+..-||++.+|+++.|+.|++|+.++.+++..++.| .+.|++++|
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAf  301 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAF  301 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEe
Confidence            888888999988753  22222 22334456888999999999999999999999999999999999998 899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEc
Q 019405          310 HPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       310 ~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +|+.+++|.+|.|++|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.1e-21  Score=158.11  Aligned_cols=284  Identities=14%  Similarity=0.104  Sum_probs=200.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++|+..|+|-+|++...... ..-+..+..|..+|..+.|++....   .+++.+.||+|++-|++.+.....+...
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s---~i~ssSyDGtiR~~D~~~~i~e~v~s~~  276 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTS---QIYSSSYDGTIRLQDFEGNISEEVLSLD  276 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChh---heeeeccCceeeeeeecchhhHHHhhcC
Confidence            45778999999999999422101 1223467789999999999998764   5999999999999999876554444331


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-  173 (341)
                      .      ....+..+.+.....        .++.+..=|...+||.+....       ....|.+ |...|..++++|- 
T Consensus       277 ~------d~~~fs~~d~~~e~~--------~vl~~~~~G~f~~iD~R~~~s-------~~~~~~l-h~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  277 T------DNIWFSSLDFSAESR--------SVLFGDNVGNFNVIDLRTDGS-------EYENLRL-HKKKITSVALNPVC  334 (498)
T ss_pred             c------cceeeeeccccCCCc--------cEEEeecccceEEEEeecCCc-------cchhhhh-hhcccceeecCCCC
Confidence            0      112233333333333        677777777889999875432       2334444 4558999999995 


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC---CCCce
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP  250 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~  250 (341)
                      ..++++++.|++.+|||+++......     .-.....|...|.+..|  +|.+..|++.+.|..|+|||..   ..-.+
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyF--SPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYF--SPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEE--cCCCCceEeeccCCceEEeecccccccCCc
Confidence            56799999999999999986443332     01112335577999999  8888889999999999999984   22223


Q ss_pred             eEEEEecCC----C--eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE-EecCCCC-EEEEEeCC
Q 019405          251 VMSFDFRET----P--IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLP-IIASCGLD  322 (341)
Q Consensus       251 ~~~~~~~~~----~--v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~l~s~~~d  322 (341)
                      ...+. |..    .  .....|.|+..++++|..-..|-|+|-..++.+..+.......|.++ .|+|-+. +++.++..
T Consensus       408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence            43333 321    2  23468999999999999999999999999998888876634466664 7999888 55555677


Q ss_pred             CcEEEEEcCC
Q 019405          323 SYLRFWDIKT  332 (341)
Q Consensus       323 g~v~iwd~~~  332 (341)
                      |.|+||--+.
T Consensus       487 Gki~vft~k~  496 (498)
T KOG4328|consen  487 GKIYVFTNKK  496 (498)
T ss_pred             ceEEEEecCC
Confidence            8999997553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.6e-22  Score=151.43  Aligned_cols=273  Identities=15%  Similarity=0.155  Sum_probs=200.8

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +..|..+|.+-+|+...-     .+...+++|-.+++++++|++++    .|+|++.|..|.+||+..|.+++.+...  
T Consensus        38 lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~sl~WS~dgr----~LltsS~D~si~lwDl~~gs~l~rirf~--  106 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTF-----RIARMLSAHVRPITSLCWSRDGR----KLLTSSRDWSIKLWDLLKGSPLKRIRFD--  106 (405)
T ss_pred             eeeeccCCcEEEEEcccc-----chhhhhhccccceeEEEecCCCC----EeeeecCCceeEEEeccCCCceeEEEcc--
Confidence            456778999999998886     34456889999999999999888    8999999999999999999999888863  


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc--ccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~--~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             .++....|.+...+       .+++.-.+..-.+-++.....  ..-..++...       ..-.+..|++.|
T Consensus       107 -------spv~~~q~hp~k~n-------~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln-------~sas~~~fdr~g  165 (405)
T KOG1273|consen  107 -------SPVWGAQWHPRKRN-------KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN-------SSASHGVFDRRG  165 (405)
T ss_pred             -------CccceeeeccccCC-------eEEEEEecCCcEEEEecCCceeeccCCCccccc-------cccccccccCCC
Confidence                   56777777776653       444444443333433322110  0000111110       112233688899


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------  248 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------  248 (341)
                      +++++|...|.+.+||.++.+.+..++...        ...|..+.+  +..+.+|+.-+.|+.||.|+++.--      
T Consensus       166 ~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~--s~~g~~liiNtsDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIV--SRKGRFLIINTSDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             CEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEE--eccCcEEEEecCCceEEEEehhhhcccCccC
Confidence            999999999999999999988877666433        134888888  8899999999999999999987311      


Q ss_pred             c--eeEEEEe--cCCCeEEEEEcCCCceEEEEeCC-CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          249 R--PVMSFDF--RETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       249 ~--~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      .  +.++++.  ....-.+++|+.+|.++++|+.. ..++||....|.+++.+.|........+.|+|-...+++- ..|
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg  314 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASG  314 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCC
Confidence            0  1111110  12345678999999999888743 5599999999999999998744678889999999999888 788


Q ss_pred             cEEEEEcCC
Q 019405          324 YLRFWDIKT  332 (341)
Q Consensus       324 ~v~iwd~~~  332 (341)
                      .|++|....
T Consensus       315 ~v~iw~~~~  323 (405)
T KOG1273|consen  315 VVYIWAVVQ  323 (405)
T ss_pred             ceEEEEeec
Confidence            999998764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=5.9e-22  Score=155.93  Aligned_cols=198  Identities=15%  Similarity=0.202  Sum_probs=152.4

Q ss_pred             eeEEEcccceeEEEEeeecccc--------cccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCc
Q 019405          125 TLLTCTTKGKASMRSIEVTKVS--------AESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~--------~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                      ..++.++.|.+.||++...-.+        .-+...++..++. |.+.-+.++|+|- ...+++|.--+.|++|...++.
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccceEeeeeccCc
Confidence            6778889999999998654321        1234455555554 5577789999993 2347777777889999988754


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceE
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                      -..  ...   + -..|...|..++|  +| ....|++|+.||+|+|||++.+. .+....+.|.+.|+.+.|+..-.+|
T Consensus       246 W~v--d~~---P-f~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lL  317 (440)
T KOG0302|consen  246 WKV--DQR---P-FTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLL  317 (440)
T ss_pred             eee--cCc---c-ccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCccee
Confidence            221  111   0 1125577999999  44 45689999999999999999863 3344457899999999999988899


Q ss_pred             EEEeCCCCEEEEECCC---CeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405          274 YIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~  332 (341)
                      |+|+.||+++|||+++   ++++..|+.| ..+|+++.|+|.. ..|++++.|.+|.+||+..
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999999999985   4678899988 9999999999954 5888899999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.3e-21  Score=147.99  Aligned_cols=270  Identities=11%  Similarity=0.090  Sum_probs=186.2

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch---he
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR---VA   90 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~   90 (341)
                      .-|..+|+.|+.+++|+..+. +|.|.+...|+.|++++.-+.+..  ...|+.+|+++.|++++||.-...+..   ..
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~-s~~W~~Ts~Wrah~~Si~rV~WAh--PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~  101 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSD-SGTWSCTSSWRAHDGSIWRVVWAH--PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRR  101 (361)
T ss_pred             CceeeeccCCCcEEEEeccCC-CCceEEeeeEEecCCcEEEEEecC--ccccceEEEEecCCceeeeeecccccccccce
Confidence            357889999999999998544 799999999999999998887765  345889999999999999975311110   00


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---------
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---------  161 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~---------  161 (341)
                      ......  .......+..+.|-+....      -.+++++.||.++||..-..        ..+..|.+.+         
T Consensus       102 Wv~~tt--l~DsrssV~DV~FaP~hlG------LklA~~~aDG~lRIYEA~dp--------~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen  102 WVRRTT--LVDSRSSVTDVKFAPKHLG------LKLAAASADGILRIYEAPDP--------MNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eEEEEE--eecCCcceeEEEecchhcc------eEEEEeccCcEEEEEecCCc--------cccccchhhhhhhhccCCc
Confidence            100000  0123466777777766552      28899999999999986432        2455565544         


Q ss_pred             ---CCceEEEEecCC---CCEEEEeeCC-----CeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecC--CC
Q 019405          162 ---SGTIAFSKVDIS---EKFSLFGGKG-----VEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DH  227 (341)
Q Consensus       162 ---~~~i~~~~~~~~---~~~l~~~~~d-----~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~  227 (341)
                         ..+..|+.|+|.   ..+||.|+.+     +.++||...... .........      .+..+|+.++|.|+-  .-
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~------d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP------DHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC------CCCCcceeeeeccccCCce
Confidence               345789999873   4678888776     478888765432 222221111      245789999995432  23


Q ss_pred             CEEEEEeCCCeEEEEEcCCCC-------------------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          228 RKFVAGTNDHQVRLYDTSAQR-------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      .+||+++.|| |+||.+....                   ..+..+..|+.+|..+.|+-.|..|++.+.||.|++|...
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            5799999999 9999987311                   1244566799999999999999999999999999999653


Q ss_pred             ---CCeEEeEEeccccCceeEEEecC
Q 019405          289 ---TGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       289 ---~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                         ..++...+..  ++.+....|++
T Consensus       319 y~n~~kC~sv~~~--e~~~~~~~~~~  342 (361)
T KOG2445|consen  319 YNNLWKCTSVLKA--EGSVTKPDFSQ  342 (361)
T ss_pred             hhhhheeeeEEec--cCCCCCccccc
Confidence               3455555554  34444444443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=5.2e-22  Score=161.60  Aligned_cols=275  Identities=9%  Similarity=0.074  Sum_probs=195.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEE--ccCCeEEEeeCCCCcchheeecc
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      +...+....+++|+..+. .+..+    +-.+..+-....|+.....   +|+++  +.|..|++|.-. ++ +.++...
T Consensus         5 l~~aS~gd~~kl~D~s~~-~~~~~----~~~~t~~pg~~s~~w~~~n---~lvvas~~gdk~~~~~~K~-g~-~~~Vp~~   74 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDL-ETKSE----YVHQTAEPGDFSFNWQRRN---FLVVASMAGDKVMRIKEKD-GK-TPEVPRV   74 (673)
T ss_pred             eeeeccCCceEEeecccc-cCccc----cccCCCCCcceeeeccccc---eEEEeecCCceeEEEeccc-CC-CCcccee
Confidence            334445557899999887 23232    3223322222233332221   25554  457889999753 33 2222221


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                      ..    ...+.-.|+.......        ++++++..+.++|||+...         .+..+-..|...|+++.++...
T Consensus        75 ~k----~~gd~~~Cv~~~s~S~--------y~~sgG~~~~Vkiwdl~~k---------l~hr~lkdh~stvt~v~YN~~D  133 (673)
T KOG4378|consen   75 RK----LTGDNAFCVACASQSL--------YEISGGQSGCVKIWDLRAK---------LIHRFLKDHQSTVTYVDYNNTD  133 (673)
T ss_pred             ec----cccchHHHHhhhhcce--------eeeccCcCceeeehhhHHH---------HHhhhccCCcceeEEEEecCCc
Confidence            00    0113333444433333        8999999999999998622         3444445677889999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      .+||+++..|.|.+..+.++.....|....+        ..|.-+.|  ++..+ +|.+++.+|.|.+||+.........
T Consensus       134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~~~  203 (673)
T KOG4378|consen  134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIFHA  203 (673)
T ss_pred             ceeEEeccCCcEEEEecccCccccceecCCC--------CeEEEeec--ccccceeeEeeccCCeEEEEeccCCCcccch
Confidence            9999999999999999999888777766543        33667888  55444 5667899999999999975543444


Q ss_pred             EEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          254 FDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ...|..+...++|+|.. .+|++.+.|..|.+||.+..+....+..  ..+...++|.++|.+|+.|+..|.|..||++.
T Consensus       204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            56699999999999965 6778899999999999998877777764  57899999999999999999999999999986


Q ss_pred             Cc
Q 019405          333 RQ  334 (341)
Q Consensus       333 ~~  334 (341)
                      .+
T Consensus       282 ~k  283 (673)
T KOG4378|consen  282 TK  283 (673)
T ss_pred             CC
Confidence            43

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=3.2e-21  Score=162.80  Aligned_cols=297  Identities=12%  Similarity=0.082  Sum_probs=212.9

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh----e---------
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV----A---------   90 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~---------   90 (341)
                      |..+++.+.....+.++.+..+.+|...|..++|..-.. +.-+||++++|..||||.+.-+....    +         
T Consensus       166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~  244 (764)
T KOG1063|consen  166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL  244 (764)
T ss_pred             CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence            334555555543455667778899999999999987666 23469999999999999875332111    0         


Q ss_pred             --------ee--ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------------
Q 019405           91 --------IS--NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------  145 (341)
Q Consensus        91 --------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---------------  145 (341)
                              +.  .....-..+|++.+.++.|.+...        .|++++.|.++.+|.......               
T Consensus       245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~--------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a  316 (764)
T KOG1063|consen  245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL--------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA  316 (764)
T ss_pred             ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--------hheecccCcceEEEecCCccceEEEEEEeecccccc
Confidence                    00  000011236889999999888776        899999999999998654421               


Q ss_pred             ---------------ccccCCceEEEEEee-------------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC---
Q 019405          146 ---------------SAESSCSTVKSWNVC-------------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---  194 (341)
Q Consensus       146 ---------------~~~~~~~~v~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---  194 (341)
                                     .+.+..|..++|...             |-..|..++|+|.|++|++.+.|.+-++|---..   
T Consensus       317 ~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~  396 (764)
T KOG1063|consen  317 GGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE  396 (764)
T ss_pred             cceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence                           012334555667622             1256899999999999999999988777643200   


Q ss_pred             --------------------------------ceeeecCCCC--------------------------------------
Q 019405          195 --------------------------------EKIWTAKPPP--------------------------------------  204 (341)
Q Consensus       195 --------------------------------~~~~~~~~~~--------------------------------------  204 (341)
                                                      +.++.+..+.                                      
T Consensus       397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence                                            0000000000                                      


Q ss_pred             ------CC------------c----------------------cCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eE
Q 019405          205 ------KN------------S----------------------LGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QV  239 (341)
Q Consensus       205 ------~~------------~----------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i  239 (341)
                            ..            +                      --.+|-..|.+++.  +|+++++|+++...     .|
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~--s~~gnliASaCKS~~~ehAvI  554 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI--SPTGNLIASACKSSLKEHAVI  554 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe--cCCCCEEeehhhhCCccceEE
Confidence                  00            0                      01234567899999  89999999988653     58


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCE
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      ++|+..+..+ ++.+.+|.-.|+.++||||+++|++.+.|.++.+|.......    ....+.| ..-|++..|+|++.+
T Consensus       555 ~lw~t~~W~~-~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~  632 (764)
T KOG1063|consen  555 RLWNTANWLQ-VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKY  632 (764)
T ss_pred             EEEeccchhh-hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccce
Confidence            9999988665 778999999999999999999999999999999998764322    2235566 889999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCC
Q 019405          316 IASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~~~  333 (341)
                      ++|+|.|.+|++|.....
T Consensus       633 FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eEEecCCceEEEEeccCc
Confidence            999999999999998877

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.8e-22  Score=148.32  Aligned_cols=193  Identities=15%  Similarity=0.153  Sum_probs=152.4

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      +|++++.|++++|+.++.+..     ...+... ..|.++|..++|..  -|.+||+++.||.|.||.-++++-.. ...
T Consensus        25 rlATcsSD~tVkIf~v~~n~~-----s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k-~~e   97 (299)
T KOG1332|consen   25 RLATCSSDGTVKIFEVRNNGQ-----SKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK-AYE   97 (299)
T ss_pred             eeeeecCCccEEEEEEcCCCC-----ceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh-hhh
Confidence            899999999999999876542     1122222 35789999999965  78999999999999999988773221 221


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCC---C-------
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD---S-------  270 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~---~-------  270 (341)
                      +.      .|...|++++|.|+.-|-.|++++.||.|.+.+.+..  ....+....|.-.|++++|.|-   |       
T Consensus        98 ~~------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   98 HA------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             hh------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence            11      1447799999977777889999999999999998864  1223445679899999999985   4       


Q ss_pred             ----ceEEEEeCCCCEEEEECCCCe--EEeEEeccccCceeEEEecCCC----CEEEEEeCCCcEEEEEcC
Q 019405          271 ----FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       271 ----~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~s~~~dg~v~iwd~~  331 (341)
                          +.|++|+.|+.|+||+..+++  +-.++.+| .+.|+.++|.|.-    ..||++|.||+|.||..+
T Consensus       172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                569999999999999998763  34558888 9999999999964    379999999999999765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=4.1e-21  Score=156.45  Aligned_cols=211  Identities=13%  Similarity=0.230  Sum_probs=167.3

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      |+++|+..+.|+|||++...+.+.++.        |.+.++++.+...+.        ++++++..|.+.|..+......
T Consensus        93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd--------h~stvt~v~YN~~De--------yiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRAKLIHRFLKD--------HQSTVTYVDYNNTDE--------YIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             eeeccCcCceeeehhhHHHHHhhhccC--------CcceeEEEEecCCcc--------eeEEeccCCcEEEEecccCccc
Confidence            899999999999999985555566665        457788888877666        9999999999999998765432


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                              ..+....+..+..+.+++..+. |.+++.+|.|.+||+....++..+...        |..+...++|. +.
T Consensus       157 --------t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~--------HsAP~~gicfs-ps  219 (673)
T KOG4378|consen  157 --------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA--------HSAPCRGICFS-PS  219 (673)
T ss_pred             --------cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh--------ccCCcCcceec-CC
Confidence                    2334444567788999997765 557899999999999877776655432        34668889995 23


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCce
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSI  304 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i  304 (341)
                      +..+|++.+.|..|.+||.+..+. ...+. ...+...++|+++|.+|++|...|.|..||++.. .++..+..| ...|
T Consensus       220 ne~l~vsVG~Dkki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sV  296 (673)
T KOG4378|consen  220 NEALLVSVGYDKKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASV  296 (673)
T ss_pred             ccceEEEecccceEEEeecccccc-cceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccce
Confidence            556888999999999999997543 55554 3468999999999999999999999999999854 567788887 8889


Q ss_pred             eEEEecCCC
Q 019405          305 RSIARHPTL  313 (341)
Q Consensus       305 ~~~~~~~~~  313 (341)
                      ++++|-|..
T Consensus       297 t~vafq~s~  305 (673)
T KOG4378|consen  297 TRVAFQPSP  305 (673)
T ss_pred             eEEEeeecc
Confidence            999998764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.1e-19  Score=151.26  Aligned_cols=233  Identities=11%  Similarity=0.081  Sum_probs=164.7

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~  144 (341)
                      .++++++.|+.|++||+.+++.+..+..+         ..+.++.+.+...        .+ +++..++.+.+|++....
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------~~~~~l~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG---------QRPRGITLSKDGK--------LLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC---------CCCCceEECCCCC--------EEEEEECCCCeEEEEECCCCc
Confidence            46889999999999999988877777642         2234555544333        44 667788999999975432


Q ss_pred             cccccCCceEEEEEeecCCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                              .+..+.  ....+..+.++|+++.+++ ++.++.|++||+++.+.+..+...          ..+.+++|  
T Consensus        65 --------~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~--  122 (300)
T TIGR03866        65 --------VIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------VEPEGMAV--  122 (300)
T ss_pred             --------EEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------CCcceEEE--
Confidence                    222222  2234567889999987765 456899999999988776665432          12567888  


Q ss_pred             cCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEeccc-
Q 019405          224 IDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC-  300 (341)
Q Consensus       224 ~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~-  300 (341)
                      +|++.+++++..++ .+.+||..+.+. +.... .......++|+|++++|+++ ..++.|++||+++++.+..+..+. 
T Consensus       123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~  200 (300)
T TIGR03866       123 SPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP  200 (300)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence            89999999888765 567789887553 33332 23355789999999888655 468999999999998877664320 


Q ss_pred             -----cCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCceeeee
Q 019405          301 -----SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       301 -----~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~  339 (341)
                           ......++|+|++++++. .+.++.+.+||+++++.+..+
T Consensus       201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~  245 (300)
T TIGR03866       201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL  245 (300)
T ss_pred             ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence                 112356889999997544 455678999999998876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=8.3e-21  Score=152.45  Aligned_cols=217  Identities=13%  Similarity=0.201  Sum_probs=162.6

Q ss_pred             CceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc-----ccCCceE------EEEE-eecCCceEEEEec
Q 019405          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSCSTV------KSWN-VCASGTIAFSKVD  171 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~-----~~~~~~v------~~~~-~~~~~~i~~~~~~  171 (341)
                      ....|+.|... +...+...++++.|+.+..|.|||+.....+.     ++.....      +-.. ..|...|..++|+
T Consensus       174 afPLC~ewld~-~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  174 AFPLCIEWLDH-GSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             Ccchhhhhhhc-CCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            33467777765 22334456699999999999999987543221     0000000      0011 1233456677776


Q ss_pred             CC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      .. .+.||+||.|.+|++||+.++++...+..+.         ..|.++.|+ +.....|++|+.|++|.+.|.+.....
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---------k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R~~~~s  322 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG---------KKVQTLEWH-PYEPSVLLSGSYDGTVALKDCRDPSNS  322 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehhhcC---------CceeEEEec-CCCceEEEeccccceEEeeeccCcccc
Confidence            54 4689999999999999999999998888654         559999997 557789999999999999999964332


Q ss_pred             eEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEE
Q 019405          251 VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRF  327 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~i  327 (341)
                      -..++ -.+.|-.++|.|.. ..++++..||+|+-+|+|.. +++.+++.| .++|.++++++.-+ ++++++.|+.|++
T Consensus       323 ~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  323 GKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             CceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEE
Confidence            33333 34678999999866 56778889999999999975 899999998 99999999998665 7899999999999


Q ss_pred             EEcCCC
Q 019405          328 WDIKTR  333 (341)
Q Consensus       328 wd~~~~  333 (341)
                      |++..-
T Consensus       401 w~~~~~  406 (463)
T KOG0270|consen  401 WKFDVD  406 (463)
T ss_pred             EeecCC
Confidence            998643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.7e-20  Score=151.28  Aligned_cols=260  Identities=14%  Similarity=0.118  Sum_probs=189.1

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +.+.+++++|-|...  -+++|+|+.-|.|-+||+.+.+  .-..+..      .+|..++.++.+.+.+..       .
T Consensus       185 ~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f------~~hs~~Vs~l~F~P~n~s-------~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF------TPHSGPVSGLKFSPANTS-------Q  249 (498)
T ss_pred             cccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEe------ccCCccccceEecCCChh-------h
Confidence            667788888777665  2379999999999999995322  1222222      357788999999887764       8


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPP  203 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~  203 (341)
                      +++.+.||+++.-|++......        ++.. .....+..++++.+...++.+..=|...+||++++.. ...+..|
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~--------v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh  321 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEE--------VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH  321 (498)
T ss_pred             eeeeccCceeeeeeecchhhHH--------HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence            9999999999999987553211        1111 1123456677877777777777777999999997544 4444444


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--c-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      .         ..|.+++++| -...+|++++.|++++|||++...  . |+.....|..+|.+..|||.+-.|++.+.|+
T Consensus       322 ~---------kKI~sv~~NP-~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  322 K---------KKITSVALNP-VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             h---------cccceeecCC-CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence            3         3489999942 245678999999999999998632  2 3445556999999999999987899999999


Q ss_pred             CEEEEECC----CCeEEeEEecccc----CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          281 DLASVDIR----TGKLLGCFIGKCS----GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       281 ~i~iwd~~----~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      .|+|||..    ...++..+.-.+.    -.....+|.|+..+++.|-.-..|-|+|-+.++.+.+++
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence            99999983    3333433331101    134557899999999999999999999999998777654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.6e-20  Score=146.12  Aligned_cols=280  Identities=12%  Similarity=0.106  Sum_probs=195.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      +++++-..|.+++++....     ..+..|.++...+..+.|..+..|+  .+.+++.||+|++||++.......+....
T Consensus        42 ~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h--~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~  114 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPH--GVISCSSDGTVRLWDIRSQAESARISWTQ  114 (376)
T ss_pred             eEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCCCCC--eeEEeccCCeEEEEEeecchhhhheeccC
Confidence            4677778999999998875     5677888888888899998876655  69999999999999999876655554321


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcc----cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .     ...+.+++.......        .++.+++    +-.+.+||++...       +.++.|.-.|...|+++.|+
T Consensus       115 ~-----~~~~f~~ld~nck~~--------ii~~GtE~~~s~A~v~lwDvR~~q-------q~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen  115 Q-----SGTPFICLDLNCKKN--------IIACGTELTRSDASVVLWDVRSEQ-------QLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             C-----CCCcceEeeccCcCC--------eEEeccccccCceEEEEEEecccc-------chhhhhhhhccCcceeEEec
Confidence            1     124566665543333        5555543    5678899997644       24888888899999999999


Q ss_pred             CC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      |. .++|++|+.||.|.+||++....--.+..      -+.+...|.++.|+ ++..+.|.+-+...+..+|+++.+.. 
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~------viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~-  246 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH------VINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE-  246 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHH------hhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh-
Confidence            94 58999999999999999975422111111      11123569999996 55556788889999999999998653 


Q ss_pred             eEEEEec------------CCCeEEEEEcC-CCceEEEEeC-CCCEEEEECC---C---CeEEeEEeccccCceeEEEec
Q 019405          251 VMSFDFR------------ETPIKAVAEEP-DSFNIYIGNG-SGDLASVDIR---T---GKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       251 ~~~~~~~------------~~~v~~~~~~~-~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ...+...            ...+-. ..+| +...++.++. -|...++-+.   +   .+.+..+.++|..-|+++.|.
T Consensus       247 ~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~  325 (376)
T KOG1188|consen  247 ETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD  325 (376)
T ss_pred             hhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh
Confidence            3222211            001111 1223 3345555444 5666665433   2   345667888668889999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcC
Q 019405          311 PTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       311 ~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..+.++.||+.||.+.+|..+
T Consensus       326 ~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  326 VKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccceeeccCCCceEEEEecC
Confidence            889999999999999999853

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.6e-20  Score=148.94  Aligned_cols=248  Identities=15%  Similarity=0.143  Sum_probs=184.7

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      .+.++++.|-+.    .++|++|+.|++++||.++ |+.-..+....     -..-++.+..+.+.+..       .+++
T Consensus       213 ~~~I~sv~FHp~----~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p~G~~-------~i~~  275 (514)
T KOG2055|consen  213 HGGITSVQFHPT----APLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAPNGHS-------VIFT  275 (514)
T ss_pred             cCCceEEEecCC----CceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecCCCce-------EEEe
Confidence            456777776554    4489999999999999885 33322222210     02245666666654432       7888


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  208 (341)
                      ++.......||+...+..      .+..-.......+....+++++++|+..+..|.|.+....+++.+..++..     
T Consensus       276 s~rrky~ysyDle~ak~~------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----  344 (514)
T KOG2055|consen  276 SGRRKYLYSYDLETAKVT------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----  344 (514)
T ss_pred             cccceEEEEeeccccccc------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----
Confidence            888899999999755422      111111112345677888999999999999999999999999988877754     


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe--EEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                           +.|..++|  +.+++.|++++.+|.|.+||++...+ ++.+... +.|  ++++.++++.+||+|+..|.|.|||
T Consensus       345 -----G~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~~~-~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  345 -----GVVSDFTF--SSDSKELLASGGTGEVYVWNLRQNSC-LHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             -----cEEeeEEE--ecCCcEEEEEcCCceEEEEecCCcce-EEEEeec-CccceeeeeecCCCceEEeccCcceEEEec
Confidence                 55899999  78899999999999999999998754 6666643 333  5677889999999999999999999


Q ss_pred             CCC------CeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCc
Q 019405          287 IRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQ  334 (341)
Q Consensus       287 ~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~  334 (341)
                      .++      .+++..+..- ...|++|.|+|+.++||.+|  .+..+|+-.+.+-.
T Consensus       416 ~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             cchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            753      3566666655 67899999999999988877  56688888877643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=4.7e-20  Score=142.66  Aligned_cols=262  Identities=14%  Similarity=0.137  Sum_probs=175.1

Q ss_pred             CCCCCceEEEEccCCeEEEeeCCCCcchhe------eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVA------ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (341)
Q Consensus        61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  134 (341)
                      ++|+|..|++-+.|..+++|++...-.-..      ++.+. .-.-.....+...+|++..+... ...+.+++.+.+.-
T Consensus        57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~-~~r~~eg~tvydy~wYs~M~s~q-P~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHL-SYRYQEGETVYDYCWYSRMKSDQ-PSTNLFAVSSRDQP  134 (406)
T ss_pred             eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccce-eEEeccCCEEEEEEeeeccccCC-CccceeeeccccCc
Confidence            455555899999999999999853211111      00000 00012345566667775433211 12337777788888


Q ss_pred             eEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEEC-CCCceeeecCCCCCCccCccC
Q 019405          135 ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFT  212 (341)
Q Consensus       135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~~~~~~~~~~  212 (341)
                      |++|+.-.++...     .-+.++... -....+++|+|||..|++|.. ..|++||+ +.|+...........  ....
T Consensus       135 Ih~wdaftG~lra-----Sy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~--k~gq  206 (406)
T KOG2919|consen  135 IHLWDAFTGKLRA-----SYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKG--KFGQ  206 (406)
T ss_pred             eeeeecccccccc-----chhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcc--cccc
Confidence            8888875544322     122233211 124569999999999997665 58999999 555433322221111  1112


Q ss_pred             CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC-C
Q 019405          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT-G  290 (341)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~-~  290 (341)
                      .+-+.+++|+ +.+...++.++....+-||.-.. ..|+..+.+|.+.|+.++|.++|..|++|.. |..|..||++. .
T Consensus       207 ~giisc~a~s-P~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  207 KGIISCFAFS-PMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cceeeeeecc-CCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            3568899994 23455899999888888887665 4479999999999999999999999999885 77899999985 4


Q ss_pred             eEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcEEEEEcCC-Cc
Q 019405          291 KLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYLRFWDIKT-RQ  334 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v~iwd~~~-~~  334 (341)
                      .++..+..|..+.-..|.|  .|++++|++|+.||.|++||++. |.
T Consensus       285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            5677777773334445555  57899999999999999999987 44

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.7e-20  Score=157.34  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=100.7

Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECC
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~  288 (341)
                      |+.+.|. +.|...|++++.||.|++|.+..+.      .|...++.|...|+++.|+|-. ..|+++++|-+|++||++
T Consensus       630 vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  630 VTDLHWD-PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeecccC-CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            4455553 2345679999999999999987532      2567788899999999999943 689999999999999999


Q ss_pred             CCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +++....+.+| .+.|.+++|+|+|+.+++.+.||+|++|+.++++
T Consensus       709 ~~~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  709 NAKLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhhhhheeccC-cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            99999999998 9999999999999999999999999999988754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.3e-19  Score=151.69  Aligned_cols=284  Identities=12%  Similarity=0.090  Sum_probs=206.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---ch
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LR   88 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~   88 (341)
                      +.+++++.|.++.+|+-.+. +|+|..+.++++-.+   .-...-|+++.    +.+++-+..|-.++|..++..   ..
T Consensus       280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~w~~~  354 (764)
T KOG1063|consen  280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTFWTQE  354 (764)
T ss_pred             hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccceeec
Confidence            57899999999999998876 799988888876442   22333445444    478888999999999833321   12


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc------------------------
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------  144 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~------------------------  144 (341)
                      ..+        ++|-+.+..+.|-+.+.        ++++++.|-+-+++.--..+                        
T Consensus       355 ~~i--------SGH~~~V~dv~W~psGe--------flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  355 PVI--------SGHVDGVKDVDWDPSGE--------FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             ccc--------ccccccceeeeecCCCC--------EEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            222        34567777777766666        77777777777666432000                        


Q ss_pred             ---cccccCCceEEEEEeec------------------------------------------------------------
Q 019405          145 ---VSAESSCSTVKSWNVCA------------------------------------------------------------  161 (341)
Q Consensus       145 ---~~~~~~~~~v~~~~~~~------------------------------------------------------------  161 (341)
                         -.++.+++.+|+|+...                                                            
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence               01223333333333211                                                            


Q ss_pred             --------------------------CCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCc
Q 019405          162 --------------------------SGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       162 --------------------------~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                                                +-.|++++.+|+++++|++....     .|++|+..+-.....+..|.      
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs------  572 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS------  572 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc------
Confidence                                      12689999999999999987654     48999998877777777765      


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                         -.|+.++|  +|++++|++.+.|+++.+|........   ....+.|..-|+++.|+|++.++++++.|.+|++|..
T Consensus       573 ---LTVT~l~F--Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  573 ---LTVTRLAF--SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             ---eEEEEEEE--CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence               45999999  999999999999999999998654322   2336679999999999999999999999999999998


Q ss_pred             CCC--eEEeE--EeccccCceeEEEecCC-----CCEEEEEeCCCcEEEEEcC
Q 019405          288 RTG--KLLGC--FIGKCSGSIRSIARHPT-----LPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       288 ~~~--~~~~~--~~~~~~~~i~~~~~~~~-----~~~l~s~~~dg~v~iwd~~  331 (341)
                      ...  +.+..  ...+ ...|+.++|.|-     +..++.|-..|.|.+|...
T Consensus       648 ~~~~d~~i~~~a~~~~-~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  648 PDLRDKYISRFACLKF-SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cCchhhhhhhhchhcc-CCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            876  44433  2233 789999999872     2267788889999999865

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.1e-19  Score=138.64  Aligned_cols=287  Identities=14%  Similarity=0.091  Sum_probs=195.5

Q ss_pred             ceeeeec----CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-------CeEEEeeCC
Q 019405           15 LRALTFD----SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPL   83 (341)
Q Consensus        15 ~~~~~~~----~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-------g~i~iw~~~   83 (341)
                      ++++.|.    +|..|.+.++..+...+  ....|..|.+.|..++-+|....   +|++...+       -.+.||.+.
T Consensus        27 icFlvgTnslK~dNqVhll~~d~e~s~l--~skvf~h~agEvw~las~P~d~~---ilaT~yn~~s~s~vl~~aaiw~ip  101 (370)
T KOG1007|consen   27 ICFLVGTNSLKEDNQVHLLRLDSEGSEL--LSKVFFHHAGEVWDLASSPFDQR---ILATVYNDTSDSGVLTGAAIWQIP  101 (370)
T ss_pred             eEEEEeccccCCcceeEEEEecCccchh--hhhhhhcCCcceehhhcCCCCCc---eEEEEEeccCCCcceeeEEEEecc
Confidence            5555553    46777888877763332  23356667888888876665552   45554332       347899886


Q ss_pred             CCcchhe---eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE-EEe
Q 019405           84 NGDLRVA---ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNV  159 (341)
Q Consensus        84 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~-~~~  159 (341)
                      .......   ++....... .+-+.+.|+.|-+...        .+++- .+..+.+|+++.++...    ..+.. -..
T Consensus       102 e~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~--------klasm-~dn~i~l~~l~ess~~v----aev~ss~s~  167 (370)
T KOG1007|consen  102 EPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSD--------KLASM-DDNNIVLWSLDESSKIV----AEVLSSESA  167 (370)
T ss_pred             cccCccccchhhHhhcCCH-HHhCceeeEEEcCCCC--------eeEEe-ccCceEEEEcccCcchh----eeecccccc
Confidence            4322111   111111100 1235788888877554        44444 48999999998776411    00000 001


Q ss_pred             ecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCC
Q 019405          160 CASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND  236 (341)
Q Consensus       160 ~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d  236 (341)
                      .+....++-+|+|  +++.+++. .|+++..||+++..+...+....        ...|..+.|  +|+.. +|++++.|
T Consensus       168 e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDf--Npnkq~~lvt~gDd  236 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH--------GQRVRDLDF--NPNKQHILVTCGDD  236 (370)
T ss_pred             cccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh--------cceeeeccC--CCCceEEEEEcCCC
Confidence            1233456678887  67777764 56799999999988777766543        255889999  56554 67889999


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCC--------------------------
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRT--------------------------  289 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~--------------------------  289 (341)
                      |.|++||.+..+.|++.+.+|...|+++.|+|.- ++|++|+.|..|.+|....                          
T Consensus       237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k  316 (370)
T KOG1007|consen  237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK  316 (370)
T ss_pred             ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc
Confidence            9999999999888999999999999999999954 7888999999999996431                          


Q ss_pred             ---CeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405          290 ---GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       290 ---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                         ...+.++..| ++.|++++|+.-.+ .+|+-|.||.+.|=.+..
T Consensus       317 pL~dg~l~tydeh-EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  317 PLQDGQLETYDEH-EDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccc-ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence               0123456666 89999999998777 678899999999877764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=8.7e-20  Score=140.99  Aligned_cols=214  Identities=13%  Similarity=0.097  Sum_probs=156.4

Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE-
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-  179 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~-  179 (341)
                      +|.+.++++++.+..+        .|++++.|+.|++|++......   +-..++. ++. -+.-+.+.|.||.+-++. 
T Consensus        84 gH~~~vt~~~FsSdGK--------~lat~~~Dr~Ir~w~~~DF~~~---eHr~~R~-nve-~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGK--------KLATISGDRSIRLWDVRDFENK---EHRCIRQ-NVE-YDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             ccCCceeeeEEcCCCc--------eeEEEeCCceEEEEecchhhhh---hhhHhhc-ccc-CCCceEEEECCCcceEEEE
Confidence            4779999999988877        9999999999999998653321   0111111 111 124578899999876554 


Q ss_pred             eeCCCeEEEEECCCCc---eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          180 GGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       180 ~~~d~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      +-...++++|.+...+   ....+.......+...|...+..+-.  ..++.+|++++.|..|.+|+++ ++. +..+..
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~-L~~idt  226 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQL-LQSIDT  226 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cce-eeeecc
Confidence            4456689999875422   21111111111122223444555666  6788999999999999999999 453 777777


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC---CC-----eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TG-----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      ....-+..+.||+|+++++++..-.|++|.+-   .|     ..+..+++| .+.|..++|+++...+++.|.||++++|
T Consensus       227 nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            76777788999999999999999999999863   22     346778898 9999999999999999999999999999


Q ss_pred             EcCC
Q 019405          329 DIKT  332 (341)
Q Consensus       329 d~~~  332 (341)
                      |++-
T Consensus       306 dtdV  309 (420)
T KOG2096|consen  306 DTDV  309 (420)
T ss_pred             eccc
Confidence            9863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.5e-20  Score=155.33  Aligned_cols=269  Identities=13%  Similarity=0.150  Sum_probs=188.3

Q ss_pred             cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--------cchheeeccCCCCCCCCCCceeeEe
Q 019405           39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--------DLRVAISNAGDSGAQPEDDGIVGLH  110 (341)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  110 (341)
                      |.+..++..|...+..++|-+...    .|++++.||+|++|+++..        +++.++.        +|.++|.|++
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr--------aH~gPVl~v~  351 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR--------AHEGPVLCVV  351 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhcccCCccccceeeeEEEe--------cccCceEEEE
Confidence            334345556777777777665554    6999999999999999432        1223333        4779999999


Q ss_pred             eeeccccccccccceeEEEcccceeEEEEeeecccccccCCc-eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEE
Q 019405          111 LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVW  189 (341)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~-~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~  189 (341)
                      +-....        .+++|+.||+|+.|++.-+.+...+.+- .+.---..|...++.+++++....|++++.||++++|
T Consensus       352 v~~n~~--------~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w  423 (577)
T KOG0642|consen  352 VPSNGE--------HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLW  423 (577)
T ss_pred             ecCCce--------EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEee
Confidence            887777        9999999999999987633222111111 1222223467789999999999999999999999999


Q ss_pred             ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-------CCCeE
Q 019405          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------ETPIK  262 (341)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~  262 (341)
                      +.....+ ..+......       +...++.+. +..-...++...-+.--++++..... +..+...       ...+.
T Consensus       424 ~~~~~~~-~~f~~~~e~-------g~Plsvd~~-ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  424 EPTEESP-CTFGEPKEH-------GYPLSVDRT-SSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             ccCCcCc-cccCCcccc-------CCcceEeec-cchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccc
Confidence            9876555 333333211       224455552 11112233333333333444443332 3333221       13467


Q ss_pred             EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .+.++|.+...+++..|+.|+++|..+++++.....| ...++++++.|+|.+|++++.|+.+++|.+....++..
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             eEEecCCCCeeEecccCCceecccccccccchheeec-cceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence            7889999999999999999999999999999999998 89999999999999999999999999999987777654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=2.7e-19  Score=142.36  Aligned_cols=295  Identities=12%  Similarity=0.085  Sum_probs=205.4

Q ss_pred             eeeeecCCCCeEEEEEecCccC----ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----
Q 019405           16 RALTFDSLGLIKVIEARGEHGG----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----   87 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----   87 (341)
                      ++.+++.|..|++|.+...+.+    .-+.+..+..|+.+|+++.|++++.    +||+|+.+|.|.+|...+-..    
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge----lLASg~D~g~v~lWk~~~~~~~~~d  103 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE----LLASGGDGGEVFLWKQGDVRIFDAD  103 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC----eeeecCCCceEEEEEecCcCCcccc
Confidence            7889999999999999887332    2223456788999999999998777    899999999999998762111    


Q ss_pred             --hheeeccCC--CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC
Q 019405           88 --RVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (341)
Q Consensus        88 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~  163 (341)
                        ....+..+-  .....|.+.+..++|.+.+.        .+++++-|..+.+||+..+..        +...+ .|..
T Consensus       104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--------~l~s~s~dns~~l~Dv~~G~l--------~~~~~-dh~~  166 (434)
T KOG1009|consen  104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--------FLVSGSVDNSVRLWDVHAGQL--------LAILD-DHEH  166 (434)
T ss_pred             chhhhCccceEEEEEecccccchhhhhccCCCc--------eeeeeeccceEEEEEecccee--------Eeecc-cccc
Confidence              000000000  00013667888899988877        999999999999999976542        22222 4667


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC----------CCCCCccCccC----CeeeeEEEEEecCCCCE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK----------PPPKNSLGIFT----PTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----------~~~~~~~~~~~----~~~v~~~~~~~~~~~~~  229 (341)
                      .++.++|+|-++++++-+.|...+.+.+...+.+....          ......+.+.|    +.....++|  +|+|.+
T Consensus       167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf--TPdG~l  244 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF--TPDGSL  244 (434)
T ss_pred             ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc--CCCCcE
Confidence            88999999999999998888877777765433322221          01111112222    234567778  899999


Q ss_pred             EEEEeC---------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC------------------CceEEEEeCCCCE
Q 019405          230 FVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------------SFNIYIGNGSGDL  282 (341)
Q Consensus       230 l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~l~~g~~dg~i  282 (341)
                      +++...         -++.++|+-...++|...+..-..+...+.|+|-                  +..++.+ ..+.|
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~sv  323 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSV  323 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceE
Confidence            887532         1334667666556677777666666666666551                  1223444 45689


Q ss_pred             EEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ++||.++.+++.....-|-..|+.++|+++|..|+..|.||...+--++..+
T Consensus       324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            9999999998888877668999999999999999999999988776666543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.1e-21  Score=169.30  Aligned_cols=221  Identities=15%  Similarity=0.213  Sum_probs=165.6

Q ss_pred             CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEee
Q 019405          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGG  181 (341)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~  181 (341)
                      ..++..++|-+...+    ..+.++.|.+||.|.+|+.....  .......+...+ .|.+.|..++|++.. ++||+|+
T Consensus        64 ~~rF~kL~W~~~g~~----~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa  136 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSH----SHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGA  136 (1049)
T ss_pred             cccceeeeecccCCC----ccceeeccccCCceEEecchhhc--cCcchHHHhhhc-ccCCceeeeeccccCCceeeccC
Confidence            466778888766553    22479999999999999976531  111222233333 477899999999965 5999999


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--  259 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--  259 (341)
                      .||.|.|||+.+.+.-.....       ...+..|.+++|. ......|++++.+|.+.|||++..+ ++..+..+..  
T Consensus       137 ~~geI~iWDlnn~~tP~~~~~-------~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~  207 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPETPFTPGS-------QAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRM  207 (1049)
T ss_pred             CCCcEEEeccCCcCCCCCCCC-------CCCcccceEeccc-hhhhHHhhccCCCCCceeccccCCC-cccccccCCCcc
Confidence            999999999987544333321       1123569999994 3345678899999999999999854 5777766544  


Q ss_pred             CeEEEEEcCCC-ceEEEEeCCC---CEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCC
Q 019405          260 PIKAVAEEPDS-FNIYIGNGSG---DLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       260 ~v~~~~~~~~~-~~l~~g~~dg---~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .+..++|+|+. ..|++++.|.   .|.+||+|.- ..++.+.+| ...|.+|.|++.+ ++|++++.|+.|.+|+.++|
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            46789999987 5566666553   4999999854 467777787 8999999999977 78999999999999999999


Q ss_pred             ceeeeec
Q 019405          334 QLLSAVC  340 (341)
Q Consensus       334 ~~~~~~~  340 (341)
                      +.+.++-
T Consensus       287 Evl~~~p  293 (1049)
T KOG0307|consen  287 EVLGELP  293 (1049)
T ss_pred             eEeeecC
Confidence            9988763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.3e-18  Score=132.92  Aligned_cols=274  Identities=14%  Similarity=0.114  Sum_probs=192.4

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCC-ceEEEEccCCeEEEeeCCCC--cch--heeeccCCCC
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNG--DLR--VAISNAGDSG   98 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~l~~~~~dg~i~iw~~~~~--~~~--~~~~~~~~~~   98 (341)
                      .+|.+..+.++ .+.......| +|.-+++-+.|.++....- ++||+.+  ..+|+|.+...  +..  ..+..+.   
T Consensus        73 Nkvqiv~ld~~-s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~k---  145 (364)
T KOG0290|consen   73 NKVQIVQLDED-SGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNK---  145 (364)
T ss_pred             CeeEEEEEccC-CCceeccCCC-CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCc---
Confidence            45566666644 3422222233 6888899999998875222 3455544  68999998742  221  1122221   


Q ss_pred             CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEE
Q 019405           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFS  177 (341)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l  177 (341)
                      .+....++++..|...+.+       ++.+.+-|-+-.||+++.+      ..+.++.--+.|.++|..++|...+ +.+
T Consensus       146 ns~~~aPlTSFDWne~dp~-------~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~DIaf~~~s~~~F  212 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPN-------LIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYDIAFLKGSRDVF  212 (364)
T ss_pred             ccccCCcccccccccCCcc-------eeEeecccCeEEEEEEeec------cccceeeEEEecCcceeEEEeccCccceE
Confidence            2334578888888777664       8899999999999999864      2446777777899999999998854 678


Q ss_pred             EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEe
Q 019405          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      |+.+.||.|++||++..+....+......      ..+...++|+ ..+.+++|+-.. ...|.|.|++....++..++.
T Consensus       213 ASvgaDGSvRmFDLR~leHSTIIYE~p~~------~~pLlRLswn-kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~  285 (364)
T KOG0290|consen  213 ASVGADGSVRMFDLRSLEHSTIIYEDPSP------STPLLRLSWN-KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN  285 (364)
T ss_pred             EEecCCCcEEEEEecccccceEEecCCCC------CCcceeeccC-cCCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence            99999999999999976544333322211      1446778885 456677777544 457999999998889999999


Q ss_pred             cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe------EEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEE
Q 019405          257 RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK------LLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRF  327 (341)
Q Consensus       257 ~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~i  327 (341)
                      |.+.|+.++|.|.. ..|++++.|..+.|||+.+.-      ++..+..  .+.|+.+.|++..+ .++.+. +..+.+
T Consensus       286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            99999999999955 789999999999999997531      2333332  67899999997554 666553 334433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=2e-19  Score=150.85  Aligned_cols=252  Identities=10%  Similarity=0.071  Sum_probs=175.2

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeee--ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--h-
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVER--WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--R-   88 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~-   88 (341)
                      .+++|+.+.|.+++.|++...     ++...  +-+|...+..++|.+.+..   .|++|+.||.|.|||..-...  + 
T Consensus       112 e~~lVsasGDsT~r~Wdvk~s-----~l~G~~~~~GH~~SvkS~cf~~~n~~---vF~tGgRDg~illWD~R~n~~d~~e  183 (720)
T KOG0321|consen  112 ESLLVSASGDSTIRPWDVKTS-----RLVGGRLNLGHTGSVKSECFMPTNPA---VFCTGGRDGEILLWDCRCNGVDALE  183 (720)
T ss_pred             ceeEEEccCCceeeeeeeccc-----eeecceeecccccccchhhhccCCCc---ceeeccCCCcEEEEEEeccchhhHH
Confidence            477999999999999999987     34333  6689999999999988774   699999999999999864321  1 


Q ss_pred             ----heeeccCCC--CCC----------CCCCceee---EeeeeccccccccccceeEEEcc-cceeEEEEeeecccccc
Q 019405           89 ----VAISNAGDS--GAQ----------PEDDGIVG---LHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAE  148 (341)
Q Consensus        89 ----~~~~~~~~~--~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~  148 (341)
                          ..+..|...  ..+          .+...+.+   ..+|.++.        .|++++. |+.++|||+.....+..
T Consensus       184 ~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~--------tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  184 EFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES--------TLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             HHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc--------eeeeccCCCcceEEEeecccccccc
Confidence                111112110  000          12233333   55666655        7888877 99999999987654322


Q ss_pred             cCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405          149 SSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (341)
Q Consensus       149 ~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (341)
                      .+...+.-+....  .-.+.++..+..|.+|++.+.|+.|++||+.+..  ++..+..+....      -.+.+ ..  +
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s------f~vks-~l--S  326 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS------FYVKS-EL--S  326 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce------eeeee-ec--C
Confidence            1111222222111  2346778888888888888889999999997532  233333322111      11111 12  7


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~  290 (341)
                      |++.++++|+.|...++|.+.+.+.+...+.+|...|++++|.|.. .-+++++.|..++||++.++
T Consensus       327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            8999999999999999999999888888999999999999998844 45677799999999998654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=134.73  Aligned_cols=250  Identities=13%  Similarity=0.068  Sum_probs=176.0

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      -.++.|+.-+.    +||+|+.||.|.|||+.+...-+.+..        |-.++.+++|.+.+.        .|++++.
T Consensus        26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsa--------H~~pi~sl~WS~dgr--------~LltsS~   85 (405)
T KOG1273|consen   26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSA--------HVRPITSLCWSRDGR--------KLLTSSR   85 (405)
T ss_pred             cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhc--------cccceeEEEecCCCC--------EeeeecC
Confidence            45666666555    999999999999999999887777766        457888999887777        9999999


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                      |..+.+||+..+.        .++  .+....+|+...|+|... .+++.-.+..-.+-++..+... .+.......+. 
T Consensus        86 D~si~lwDl~~gs--------~l~--rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln-  153 (405)
T KOG1273|consen   86 DWSIKLWDLLKGS--------PLK--RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLN-  153 (405)
T ss_pred             CceeEEEeccCCC--------cee--EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccc-
Confidence            9999999986543        222  334467999999998543 3333333333444455432221 12221111111 


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                         ....+..|  .+.|+++++|...|.+.++|..+.+. +..++-.. ..|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus       154 ---~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~-vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  154 ---SSASHGVF--DRRGKYIITGTSKGKLLVYDAETLEC-VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             ---cccccccc--cCCCCEEEEecCcceEEEEecchhee-eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence               11223356  78999999999999999999998764 77776655 6899999999999999999999999999862


Q ss_pred             C-------e--EEeEEecc-ccCceeEEEecCCCCEEEEEeC-CCcEEEEEcCCCceeeee
Q 019405          290 G-------K--LLGCFIGK-CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       290 ~-------~--~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~  339 (341)
                      -       +  +.++++.- +...=.+++|+.+|.+++.++. -..++||.-..|.+++.+
T Consensus       228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence            1       1  11222110 1223356789999999887764 457999999999888765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=7.5e-19  Score=136.08  Aligned_cols=277  Identities=15%  Similarity=0.184  Sum_probs=193.6

Q ss_pred             eeeeecCCCCeEEEEEecCc----cCcc---ceeeeccCCCCCceeEEEe-----ccCCCCCceEEEEccCCeEEEeeCC
Q 019405           16 RALTFDSLGLIKVIEARGEH----GGVP---KVVERWGDPHSSNCVLAAS-----IDDSQNDPLLAVARKNGLTDILNPL   83 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~l~~~~~dg~i~iw~~~   83 (341)
                      .+++-++|..+++|++..+.    .+..   +....++- ....++...+     ....|+..++++.+.+.-|++||.-
T Consensus        63 ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaf  141 (406)
T KOG2919|consen   63 CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAF  141 (406)
T ss_pred             eEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecc
Confidence            36677788888999876541    0100   00011111 1122222222     2345677799999999999999999


Q ss_pred             CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE----Ee
Q 019405           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW----NV  159 (341)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~----~~  159 (341)
                      +|+....+.......   .-....++++.+...        .|+ ++....|+++++.....     +-.++.-    ..
T Consensus       142 tG~lraSy~~ydh~d---e~taAhsL~Fs~DGe--------qlf-aGykrcirvFdt~RpGr-----~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  142 TGKLRASYRAYDHQD---EYTAAHSLQFSPDGE--------QLF-AGYKRCIRVFDTSRPGR-----DCPVYTTVTKGKF  204 (406)
T ss_pred             ccccccchhhhhhHH---hhhhheeEEecCCCC--------eEe-ecccceEEEeeccCCCC-----CCcchhhhhcccc
Confidence            999988887642110   012233555544443        454 45578899999843221     1111110    11


Q ss_pred             ecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC
Q 019405          160 CASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH  237 (341)
Q Consensus       160 ~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~  237 (341)
                      ...+.|.|++++|.. +.++.|+....+-||.-..+.++..+.++.         +.|+.+.|  .++|+.|.+|.. |.
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~--~edGn~lfsGaRk~d  273 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQW--CEDGNKLFSGARKDD  273 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEe--ccCcCeecccccCCC
Confidence            123568899999955 589999999999999988888888877655         66999999  789999999875 67


Q ss_pred             eEEEEEcCCCCceeEEEEecCC-CeEEE--EEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCC
Q 019405          238 QVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .|-.||++....++..+..|.. .-..|  ...|.+++|++|+.||.|++||+++ +..+..+..+ ...++.++++|--
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m  352 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM  352 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence            8999999988777877777654 22233  4468999999999999999999998 7777778777 8999999999999


Q ss_pred             CEEEEEeCC
Q 019405          314 PIIASCGLD  322 (341)
Q Consensus       314 ~~l~s~~~d  322 (341)
                      +++++++..
T Consensus       353 pilatssGq  361 (406)
T KOG2919|consen  353 PILATSSGQ  361 (406)
T ss_pred             ceeeeccCc
Confidence            999988754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=3e-18  Score=148.04  Aligned_cols=285  Identities=14%  Similarity=0.092  Sum_probs=195.3

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeeccCCCCCCC
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQP  101 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~  101 (341)
                      +.+.+|++.+.  ..++.  .+ .-...+.++.|++...   .+|+.|+.+|.|.+||+..+..  ...+..+    ...
T Consensus       222 ~~~~vW~~~~p--~~Pe~--~~-~~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----~~s  289 (555)
T KOG1587|consen  222 GVLLVWSLKNP--NTPEL--VL-ESPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----EVS  289 (555)
T ss_pred             ceEEEEecCCC--CCceE--EE-ecCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCCCcccccc----ccc
Confidence            46788888886  43344  33 3467889999998665   3688899999999999987655  2222211    124


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE---EEeecCCceEEEEecC-CCCEE
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDI-SEKFS  177 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~---~~~~~~~~i~~~~~~~-~~~~l  177 (341)
                      |.++++.+.|.....+      ..+++++.||.+..|+++.-.............   -+......+++++|.+ +...+
T Consensus       290 h~~~v~~vvW~~~~~~------~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHN------TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             CCcCeEEEEEeccCCC------CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            7788888888775441      269999999999999876543311000000011   0001124578888877 45778


Q ss_pred             EEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405          178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (341)
Q Consensus       178 ~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  255 (341)
                      ++|+.+|.|.--+-...+..  ..++.+   .....|.+.|+++.+  +|=+..+...+.|-+++||.......|+..+.
T Consensus       364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~---~~~~~h~g~v~~v~~--nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  364 IVGTEEGKVYKGCRKGYTPAPEVSYKGH---STFITHIGPVYAVSR--NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             EEEcCCcEEEEEeccCCccccccccccc---ccccccCcceEeeec--CCCccceeeeeccceeEeccccCCCCcchhhh
Confidence            89999999886332221111  111211   112235678999999  66555444444499999999885566788888


Q ss_pred             ecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC--eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       256 ~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .+...+++++|||.. ..++++..||.|.+||+...  .++.+.+.+ ....+.+.|++.|+.|+.|...|.+++|++..
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            888889999999965 67788888999999999754  445555554 56778888999999999999999999999963

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.5e-18  Score=128.14  Aligned_cols=241  Identities=18%  Similarity=0.120  Sum_probs=172.4

Q ss_pred             EeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec--cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405           57 ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (341)
Q Consensus        57 ~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  134 (341)
                      |+...+|.+++|++|..+|.|.+..+.+-..-.....  ..-.++..|++++..+.+.+.          .|++++ ||.
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----------~Lls~g-dG~   82 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----------FLLSGG-DGL   82 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----------heeecc-Cce
Confidence            4445566677999999999999998864211111111  011123468889988888632          666665 599


Q ss_pred             eEEEEeeecccccccCCceEEEEEeecC--------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          135 ASMRSIEVTKVSAESSCSTVKSWNVCAS--------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      ++-|..+.....    .+.-++|+...+        ..|..+.+.|..+.++.++.|+.++.||+++|+..+.+++|.  
T Consensus        83 V~gw~W~E~~es----~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt--  156 (325)
T KOG0649|consen   83 VYGWEWNEEEES----LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT--  156 (325)
T ss_pred             EEEeeehhhhhh----ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc--
Confidence            998887654321    223344544322        358899999988888888899999999999999999999975  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec----------CCCeEEEEEcCCCceEEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----------ETPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~g  276 (341)
                             .++.++.-  ......+++|++||++|+||.++++. +..+...          ...|-+++.+.  .+|++|
T Consensus       157 -------DYvH~vv~--R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCG  224 (325)
T KOG0649|consen  157 -------DYVHSVVG--RNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCG  224 (325)
T ss_pred             -------ceeeeeee--cccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC--ceEEec
Confidence                   77999887  55667899999999999999999775 5555431          23456666544  488776


Q ss_pred             eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      + ...+.+|+++..++...|.-  .+++..+.|..+  .+++++..+.|.-|.+.
T Consensus       225 g-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  225 G-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             C-CCceeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec
Confidence            5 56799999999998888875  467888888544  57777777777777664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.2e-18  Score=154.03  Aligned_cols=250  Identities=19%  Similarity=0.248  Sum_probs=182.2

Q ss_pred             CCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (341)
Q Consensus        63 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~  142 (341)
                      |..+.++++...-+|+|||.+.++.+..+....     +....+..+.+.+..+..      .+++++.||.++||+--.
T Consensus      1074 pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~a------LlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDA------LLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchh------heeeeccCceEEEecccc
Confidence            444479999888899999999998877776643     334778889998877643      899999999999997422


Q ss_pred             cccccccCCceEEEEEeecC------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeee
Q 019405          143 TKVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (341)
Q Consensus       143 ~~~~~~~~~~~v~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (341)
                      ..-   .....|..|..-.+      +.-.-++|.....+|+++|.-..|+|||.........+.....        ..+
T Consensus      1143 ~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~--------t~v 1211 (1387)
T KOG1517|consen 1143 DKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS--------TLV 1211 (1387)
T ss_pred             ccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC--------ccc
Confidence            210   11223444442211      1114456766666777777778999999998877777665432        346


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEEEecCCC--eEEEEEcCCC-ceEEEEeCCCCEEEEECCCCe
Q 019405          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       217 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~--v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      +++.-. ...|+.+++|..||.|++||.+...  .++...+.|+..  |..+.+.+.| ..|++|+.+|.|++||++...
T Consensus      1212 TaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1212 TALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred             eeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence            666553 3457999999999999999998643  357788888887  9999998877 359999999999999999742


Q ss_pred             EE--eEEeccc--cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          292 LL--GCFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       292 ~~--~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      ..  .....|.  .+..+++..|+..+.+|+|+. +.|+||++. |+.+.
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence            21  1222221  235999999999999999998 999999987 44443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=6.4e-19  Score=148.86  Aligned_cols=278  Identities=12%  Similarity=0.112  Sum_probs=200.2

Q ss_pred             ceeecCCCCCceeeeecCCCCe---------EEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC
Q 019405            5 TTLECPGCPPLRALTFDSLGLI---------KVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG   75 (341)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~g~i---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg   75 (341)
                      .+.+-|+-..+.-+++-+||+.         .+++..++     .+.+++++|...|++++++.++.    ++|+|+.|.
T Consensus         5 ~~~r~~~~hci~d~afkPDGsqL~lAAg~rlliyD~ndG-----~llqtLKgHKDtVycVAys~dGk----rFASG~aDK   75 (1081)
T KOG1538|consen    5 LTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDG-----TLLQPLKGHKDTVYCVAYAKDGK----RFASGSADK   75 (1081)
T ss_pred             hhhhcccccchheeEECCCCceEEEecCCEEEEEeCCCc-----ccccccccccceEEEEEEccCCc----eeccCCCce
Confidence            3344445455556677777765         34455544     56778999999999999999888    899999999


Q ss_pred             eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEE
Q 019405           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK  155 (341)
Q Consensus        76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~  155 (341)
                      .|.||+..   ....++.       .|.+.|.|+.+.+...        .+++++- ....+|+.+..         .+.
T Consensus        76 ~VI~W~~k---lEG~LkY-------SH~D~IQCMsFNP~~h--------~LasCsL-sdFglWS~~qK---------~V~  127 (1081)
T KOG1538|consen   76 SVIIWTSK---LEGILKY-------SHNDAIQCMSFNPITH--------QLASCSL-SDFGLWSPEQK---------SVS  127 (1081)
T ss_pred             eEEEeccc---ccceeee-------ccCCeeeEeecCchHH--------Hhhhcch-hhccccChhhh---------hHH
Confidence            99999864   2233333       3568888888777665        6666653 34556765322         222


Q ss_pred             EEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEE
Q 019405          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVA  232 (341)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~  232 (341)
                      .+  .....+.+++|..||++++.|-.+|+|.+-+- ++++...+..+.+.      ..+|.+++|+|+..   ...+++
T Consensus       128 K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~------Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  128 KH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGS------NSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCC------CCCceEEEecCCCCCCccceEEE
Confidence            21  12356889999999999999999999999864 44444444443322      36699999954221   246777


Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .....++.+|.+.. +. +..-+.-+..-.|+.+.++|.+++.|+.|+.+.+|. +.|-.+.++... ..+|+.++..|+
T Consensus       199 ~DW~qTLSFy~LsG-~~-Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PN  274 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSG-KQ-IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPN  274 (1081)
T ss_pred             EeccceeEEEEecc-ee-ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccC
Confidence            77788888887774 22 222222233456889999999999999999999995 568788777665 889999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 019405          313 LPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ++.++.|+.||+|..|++..
T Consensus       275 sQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  275 SQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CceEEEEEccCeeehhhhHH
Confidence            99999999999999998753

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.4e-18  Score=153.60  Aligned_cols=283  Identities=17%  Similarity=0.190  Sum_probs=182.8

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCC---CCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CC-c---ch
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH---SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG-D---LR   88 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~-~---~~   88 (341)
                      +++.++.-.|.+|+..+.     +.+..|..+.   ..|+.+.+-  ...+..+|++|+.||.||||+-- +. +   .+
T Consensus      1079 i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~li--Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELI--NEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred             eEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeee--cccchhheeeeccCceEEEecccccccCCceeE
Confidence            566666788999998887     5555554432   334433333  33334589999999999999643 22 2   22


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      ..+....+.-  +.......+.-|.....       .|++++.-..++|||......        +.-........++++
T Consensus      1152 Taw~~Ls~~~--~~~r~~~~v~dWqQ~~G-------~Ll~tGd~r~IRIWDa~~E~~--------~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1152 TAWSSLSDQL--PGARGTGLVVDWQQQSG-------HLLVTGDVRSIRIWDAHKEQV--------VADIPYGSSTLVTAL 1214 (1387)
T ss_pred             EeeccccccC--ccCCCCCeeeehhhhCC-------eEEecCCeeEEEEEeccccee--------EeecccCCCccceee
Confidence            2222211111  11122223333433322       777777788899999765432        222222234456666


Q ss_pred             EecC-CCCEEEEeeCCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEE
Q 019405          169 KVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYD  243 (341)
Q Consensus       169 ~~~~-~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd  243 (341)
                      .-+- .|+.+++|..||.|++||.+....   +...+.|..       ...|..+.+  .+.|- .|++|+.||.|++||
T Consensus      1215 S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-------~~~Iv~~sl--q~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1215 SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-------VEPIVHLSL--QRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred             cccccCCceEEEeecCCceEEeecccCCccccceeecccCC-------cccceeEEe--ecCCCcceeeeccCCeEEEEe
Confidence            5543 479999999999999999875433   223333321       123888888  44333 599999999999999


Q ss_pred             cCCC-CceeEEEEecC--C-CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe------ccccCceeEEEecCCC
Q 019405          244 TSAQ-RRPVMSFDFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTL  313 (341)
Q Consensus       244 ~~~~-~~~~~~~~~~~--~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~  313 (341)
                      ++.. +........|.  + ..+++..+++...+|+|+. +.|+||++. |+.+..++      +...+.+.+++|||-.
T Consensus      1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh
Confidence            9973 22222333332  2 5899999999999999998 999999986 44444333      2234678999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc
Q 019405          314 PIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       314 ~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      -++|.|+.|..|.||.....+
T Consensus      1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             HhhhhccCCceEEEeecCCcC
Confidence            999999999999999887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=2.2e-16  Score=132.92  Aligned_cols=279  Identities=11%  Similarity=0.098  Sum_probs=169.7

Q ss_pred             eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEE-ccCCeEEEeeCCC-CcchheeeccC
Q 019405           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPLN-GDLRVAISNAG   95 (341)
Q Consensus        18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~~~~~~~~~   95 (341)
                      ++...++.|.+|++...  |..+++.++.. ......++++++.+    +|+++ ..++.|.+|++.. ++. ...... 
T Consensus         6 ~~~~~~~~I~~~~~~~~--g~l~~~~~~~~-~~~~~~l~~spd~~----~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-   76 (330)
T PRK11028          6 IASPESQQIHVWNLNHE--GALTLLQVVDV-PGQVQPMVISPDKR----HLYVGVRPEFRVLSYRIADDGAL-TFAAES-   76 (330)
T ss_pred             EEcCCCCCEEEEEECCC--CceeeeeEEec-CCCCccEEECCCCC----EEEEEECCCCcEEEEEECCCCce-EEeeee-
Confidence            44467899999999643  54455556633 34455677776655    77665 4588899999863 332 222211 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                           +..+....+.+.+..+        .++++ ..++.+.+|+++.....    ...+..  .........++++|++
T Consensus        77 -----~~~~~p~~i~~~~~g~--------~l~v~~~~~~~v~v~~~~~~g~~----~~~~~~--~~~~~~~~~~~~~p~g  137 (330)
T PRK11028         77 -----PLPGSPTHISTDHQGR--------FLFSASYNANCVSVSPLDKDGIP----VAPIQI--IEGLEGCHSANIDPDN  137 (330)
T ss_pred             -----cCCCCceEEEECCCCC--------EEEEEEcCCCeEEEEEECCCCCC----CCceee--ccCCCcccEeEeCCCC
Confidence                 0112334455444443        45544 45889999998532110    011111  1222346678899999


Q ss_pred             CEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCC--C-c
Q 019405          175 KFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQ--R-R  249 (341)
Q Consensus       175 ~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~--~-~  249 (341)
                      ++++++ ..++.|.+||+.+...+.........   .........++|  +|++++++++.. +++|.+|++...  + .
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~  212 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEIE  212 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence            988654 45689999999763322110000000   000122567889  899999988776 899999999742  2 1


Q ss_pred             eeEEEEec------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCe----EEeEEeccccCceeEEEecCCCCEEEE
Q 019405          250 PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       250 ~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      .+..+...      ......+.++|++++++++.. ++.|.+|++....    .+.....  ......+.++|+|++|++
T Consensus       213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEE
Confidence            23333221      112335889999999999864 6889999986432    2232222  224568999999999887


Q ss_pred             EeC-CCcEEEEEcC
Q 019405          319 CGL-DSYLRFWDIK  331 (341)
Q Consensus       319 ~~~-dg~v~iwd~~  331 (341)
                      ++. +++|.+|+++
T Consensus       291 a~~~~~~v~v~~~~  304 (330)
T PRK11028        291 AGQKSHHISVYEID  304 (330)
T ss_pred             EEccCCcEEEEEEc
Confidence            775 8899999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=5.8e-19  Score=141.28  Aligned_cols=189  Identities=18%  Similarity=0.141  Sum_probs=137.0

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+.+++.||.++||+....         ........|.+.|.++.|+||+++|++.+.| ..+||+.+++..+.......
T Consensus       158 ~latgg~dg~lRv~~~Ps~---------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  158 KLATGGTDGTLRVWEWPSM---------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EeeeccccceEEEEecCcc---------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            6666666666666664221         1122334577899999999999999999999 89999999996665554322


Q ss_pred             CCccCccCCeeeeEEEEEecCCC---C--EEEEEeCCCeEEEEEcCCCCc----eeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDH---R--KFVAGTNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~---~--~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ++       .....+.|  ..++   .  .++....-+.|+.||+.....    +..+.......|++++.+++|++++.
T Consensus       228 k~-------~~~~~cRF--~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  228 KD-------EMFSSCRF--SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cc-------hhhhhcee--cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence            21       23556667  4444   2  223333445677766654322    12222223458999999999999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      |+.||.|-|++..+.+.++-.+..|...|+.+.|+|+.+++++.+.|....+..+.-
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999988877765699999999999999999999999988887653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.9e-19  Score=147.82  Aligned_cols=256  Identities=10%  Similarity=0.050  Sum_probs=176.0

Q ss_pred             eeeeecCCCCeEEEEEe---cCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           16 RALTFDSLGLIKVIEAR---GEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      .++++++||.+++|++.   .......+.+.+|.+|.++|.|++++....    .+.+|+.||+|+.|++....  ..+.
T Consensus       308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~----~~ysgg~Dg~I~~w~~p~n~--dp~d  381 (577)
T KOG0642|consen  308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE----HCYSGGIDGTIRCWNLPPNQ--DPDD  381 (577)
T ss_pred             eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce----EEEeeccCceeeeeccCCCC--Cccc
Confidence            48999999999999993   333466678889999999999999988777    89999999999999765211  1111


Q ss_pred             ccC----CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEE
Q 019405           93 NAG----DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAF  167 (341)
Q Consensus        93 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~  167 (341)
                      .+.    .....+|.+.+..+.+.....        .|++++.||+++.|.......         +.|.... .+.-.+
T Consensus       382 s~dp~vl~~~l~Ghtdavw~l~~s~~~~--------~Llscs~DgTvr~w~~~~~~~---------~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  382 SYDPSVLSGTLLGHTDAVWLLALSSTKD--------RLLSCSSDGTVRLWEPTEESP---------CTFGEPKEHGYPLS  444 (577)
T ss_pred             ccCcchhccceeccccceeeeeeccccc--------ceeeecCCceEEeeccCCcCc---------cccCCccccCCcce
Confidence            111    111234667777777777666        899999999999998754332         2222211 122233


Q ss_pred             EEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          168 SKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       168 ~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +++-... ...++...-+.--+++++....+..+........  .....+.-+.+  .|...+.+++..|+.|+++|..+
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~--~~~~~in~vVs--~~~~~~~~~~hed~~Ir~~dn~~  520 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP--RRYPQINKVVS--HPTADITFTAHEDRSIRFFDNKT  520 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc--cccCccceEEe--cCCCCeeEecccCCceecccccc
Confidence            3332211 2222222233333445555544444433221100  01133666677  67889999999999999999998


Q ss_pred             CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      ++ +++....|...++++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       521 ~~-~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  521 GK-ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             cc-cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            76 48888899999999999999999999999999999999877777666554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=7.2e-17  Score=127.34  Aligned_cols=163  Identities=17%  Similarity=0.239  Sum_probs=130.7

Q ss_pred             eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE--eCC
Q 019405          159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TND  236 (341)
Q Consensus       159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~d  236 (341)
                      ..-..+|.++.++.  +.|+++-.+ .|+|||+++.+.+..+.....+      +..+.++.+  ++.+.+++--  ...
T Consensus        84 ~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n------~~gl~AlS~--n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   84 IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN------PKGLCALSP--NNANCYLAYPGSTTS  152 (391)
T ss_pred             EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCC------ccceEeecc--CCCCceEEecCCCCC
Confidence            33456788888864  566666665 5999999999999888765322      233444444  6666677753  346


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-EEEEECCCCeEEeEEecc-ccCceeEEEecCCCC
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLP  314 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  314 (341)
                      |.|.+||..+-+ ++..+..|++++-+++|+++|.+||+++..|+ ||+|++.+|+.+++|+-. ....|++++|+|+++
T Consensus       153 GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  153 GDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             ceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence            899999999855 58999999999999999999999999999887 899999999999999742 235799999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCC
Q 019405          315 IIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd~~~~  333 (341)
                      +|++.|..++|++|.+...
T Consensus       232 ~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  232 FLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEecCCCeEEEEEeccc
Confidence            9999999999999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=131.93  Aligned_cols=192  Identities=17%  Similarity=0.172  Sum_probs=143.3

Q ss_pred             eeEEEEeeeccccc-ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCCCCCccCcc
Q 019405          134 KASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIF  211 (341)
Q Consensus       134 ~~~i~~~~~~~~~~-~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~~  211 (341)
                      ...||.+......+ ...-..+...+...-+.|.|+.|.|++..+++-. |+.|.+|++..+.. ...+.......    
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e----  168 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE----  168 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc----
Confidence            46788876543321 1112234444444456899999999999988765 77899999987665 34333322111    


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~  290 (341)
                      +....++-+|.|+.+++.+++. .|+++..||+++.++....-..|...|..+.|+|+- .+|++++.||.|+|||.+.-
T Consensus       169 ~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            2344777789655688888876 588999999999776455556688899999999987 46788999999999999854


Q ss_pred             -eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCC
Q 019405          291 -KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       291 -~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~  332 (341)
                       .++.++.+| ...|+++.|+|.- +++++++.|..|.+|...+
T Consensus       248 k~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  248 KFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             CccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence             578889998 9999999999965 5889999999999998654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.80  E-value=1.1e-17  Score=127.83  Aligned_cols=260  Identities=15%  Similarity=0.129  Sum_probs=172.7

Q ss_pred             CCceeEEEeccCCCCCceEEEEcc----CCeEEEeeCCC--CcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLN--GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~----dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      -..+.+.||.. ...+.+||.|+.    .++|.|-.+..  ++.+..-.       -.+.-+++.+.|.+....   ...
T Consensus        45 ~~lya~~Ws~~-~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g---~~p  113 (364)
T KOG0290|consen   45 WPLYAMNWSVR-PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKG---VYP  113 (364)
T ss_pred             CceeeeccccC-CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccc---cCc
Confidence            44556666644 222346888874    46777776542  22222211       135567778888877642   121


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCce---eee
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK---IWT  199 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~---~~~  199 (341)
                      ..|+  +.+..+++|.+.........+.-...--+.....+++++.|+. +.++|.+++-|-+..|||++++..   ...
T Consensus       114 dlLA--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ  191 (364)
T KOG0290|consen  114 DLLA--TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ  191 (364)
T ss_pred             chhh--cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence            1333  3355899999875321100000000001223456899999986 678999999999999999998622   223


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCC-ceEEEE
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FNIYIG  276 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~g  276 (341)
                      +..         |...|..++|. ...-+.+++.+.||.+|+||++..+.....+...  ..+...++|++.. +++|+-
T Consensus       192 LIA---------HDKEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  192 LIA---------HDKEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             EEe---------cCcceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence            333         44669999994 2334689999999999999999865433333332  4578889998855 677765


Q ss_pred             eCC-CCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCC
Q 019405          277 NGS-GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       277 ~~d-g~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~  333 (341)
                      ..| ..|.|.|++.. .++..+++| .+.|+.++|.|.. ..|++++.|..+.+||+.+.
T Consensus       262 ~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  262 AMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             hcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            544 66999999864 578889998 9999999999965 58999999999999999753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.79  E-value=2.2e-15  Score=131.38  Aligned_cols=274  Identities=20%  Similarity=0.317  Sum_probs=194.3

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCC-CceeEEEeccCCCCCc-eEEEE-ccCCeEEEeeCCC-Ccchhee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-SNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI   91 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~-~l~~~-~~dg~i~iw~~~~-~~~~~~~   91 (341)
                      .++.++.++.+.+|+.....    .....+..... .+..+.+.   .+++. +++.. ..|+.+++|+... ......+
T Consensus        79 ~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  151 (466)
T COG2319          79 LLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALS---SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL  151 (466)
T ss_pred             EEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEE---CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence            35556679999999988862    13334444222 44444442   22333 44443 4499999999987 5555555


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      ..        +...+..+.+.+...        .++.++. ++.+.+|++....        .+..... +...+.++++
T Consensus       152 ~~--------~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~v~~~~~  206 (466)
T COG2319         152 EG--------HSESVTSLAFSPDGK--------LLASGSSLDGTIKLWDLRTGK--------PLSTLAG-HTDPVSSLAF  206 (466)
T ss_pred             ec--------CcccEEEEEECCCCC--------EEEecCCCCCceEEEEcCCCc--------eEEeecc-CCCceEEEEE
Confidence            55        345566666666554        6777775 9999999986522        3333332 6788999999


Q ss_pred             cCCCC-EEEEeeCCCeEEEEECCCCceee-ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       171 ~~~~~-~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      +|++. .+++++.|+.|++||...+.... .+..+..         .. ...|  ++++.++++++.|+.+++|+.....
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------~~-~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD---------SV-VSSF--SPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc---------ce-eEeE--CCCCCEEEEecCCCcEEEeeecCCC
Confidence            99998 55555999999999988777766 4555432         12 1267  7788888999999999999999755


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe--ccccCceeEEEecCCCCEEEEE-eCCCcE
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GLDSYL  325 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~-~~dg~v  325 (341)
                      ..+..+..|...+.++.|+|++..+++++.|+.+.+||..+........  .| ...+..+.|.+++..++.+ ..|+.+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence            4344446788899999999988888889889889999999887766665  66 6679999994332455555 688999


Q ss_pred             EEEEcCCCc
Q 019405          326 RFWDIKTRQ  334 (341)
Q Consensus       326 ~iwd~~~~~  334 (341)
                      .+|++....
T Consensus       354 ~~~~~~~~~  362 (466)
T COG2319         354 RLWDLRTGK  362 (466)
T ss_pred             EeeecCCCc
Confidence            999998776

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=1.8e-18  Score=134.22  Aligned_cols=248  Identities=13%  Similarity=0.129  Sum_probs=175.5

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +++++..|.|++++....     ++...+.+|..+++.+.|.++..   +++++++.|..||+|++++..++..+-+.  
T Consensus       108 la~~G~~GvIrVid~~~~-----~~~~~~~ghG~sINeik~~p~~~---qlvls~SkD~svRlwnI~~~~Cv~VfGG~--  177 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSG-----QCSKNYRGHGGSINEIKFHPDRP---QLVLSASKDHSVRLWNIQTDVCVAVFGGV--  177 (385)
T ss_pred             EEeecceeEEEEEecchh-----hhccceeccCccchhhhcCCCCC---cEEEEecCCceEEEEeccCCeEEEEeccc--
Confidence            444558899999999887     67778899999999999988776   48999999999999999999999988774  


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc-------cccCCceE--------EEEE---
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS-------AESSCSTV--------KSWN---  158 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~-------~~~~~~~v--------~~~~---  158 (341)
                         .+|.+.+.++.+.....        ++++++.|+++++|++......       .-..+++.        .+.+   
T Consensus       178 ---egHrdeVLSvD~~~~gd--------~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  178 ---EGHRDEVLSVDFSLDGD--------RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             ---ccccCcEEEEEEcCCCC--------eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence               25779999999877776        9999999999999999733210       00111111        1111   


Q ss_pred             -eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCc-----cCccCCeeeeEEEEEecCCCCEEE
Q 019405          159 -VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNS-----LGIFTPTWFTSAAFLSIDDHRKFV  231 (341)
Q Consensus       159 -~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~  231 (341)
                       -.|...|.|+.|-  |+++++=+-++.|..|...+ .+.+.....+....     +.. ....+.-+.|..++-.+.|+
T Consensus       247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la  323 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLA  323 (385)
T ss_pred             cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHh
Confidence             1133455566664  57899888899999998732 22222222211110     000 01224455554378889999


Q ss_pred             EEeCCCeEEEEEcCCCCcee-EEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          232 AGTNDHQVRLYDTSAQRRPV-MSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       232 ~~~~d~~i~iwd~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      .|...|.|.+||++....+. .++..  ....|...+|+.++..|+..+.|+.|.-||..
T Consensus       324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999755322 22221  23568899999999999999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=7.8e-17  Score=128.15  Aligned_cols=213  Identities=15%  Similarity=0.102  Sum_probs=158.7

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .+.+|.+++.-++|++....   .||+|+.|.+|.||++..+.....+.           .+++.+              
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~---vIASgSeD~~v~vW~IPe~~l~~~lt-----------epvv~L--------------  127 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDC---VIASGSEDTKVMVWQIPENGLTRDLT-----------EPVVEL--------------  127 (472)
T ss_pred             CccCccccccccccCccCCc---eeecCCCCceEEEEECCCcccccCcc-----------cceEEE--------------
Confidence            46689999999999986653   59999999999999987654433222           111111              


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                                                         ..|...|-.++|+|. .+.|++++.|++|.+||+.+++.+..+. 
T Consensus       128 -----------------------------------~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-  171 (472)
T KOG0303|consen  128 -----------------------------------YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-  171 (472)
T ss_pred             -----------------------------------eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence                                               134566778888885 4788999999999999999999887766 


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-eEEEEEcCCCceEEEEe---C
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN---G  278 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~---~  278 (341)
                               |+.-|.++.|  +.+|.+|++.+.|..|||||.++++. +..-.+|.+. -..+.|-.++..+-+|.   .
T Consensus       172 ---------hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~i~tTGfsr~s  239 (472)
T KOG0303|consen  172 ---------HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGKIFTTGFSRMS  239 (472)
T ss_pred             ---------CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCceeeecccccc
Confidence                     3466999999  89999999999999999999999774 6666667543 34466777887555554   3


Q ss_pred             CCCEEEEECCCCeE---EeEEeccccCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCc
Q 019405          279 SGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       279 dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~  334 (341)
                      +..+-+||..+.+.   ..++..  ++.|.---|.++...+.. |-.|+.||.|.+.+-.
T Consensus       240 eRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  240 ERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            67799999876532   344443  456777778888886654 4579999999997654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=137.56  Aligned_cols=207  Identities=16%  Similarity=0.143  Sum_probs=157.1

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      -|+.++.||++.|.+- .++..+.+..|        .+.+.+-.|.+...        -|+++++||.+++|+       
T Consensus        77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH--------~~A~~~gRW~~dGt--------gLlt~GEDG~iKiWS-------  132 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNK-SARVERSISAH--------AAAISSGRWSPDGA--------GLLTAGEDGVIKIWS-------  132 (737)
T ss_pred             eEEEEcCCceEEEecc-cchhhhhhhhh--------hhhhhhcccCCCCc--------eeeeecCCceEEEEe-------
Confidence            5888888999999986 57777777764        45666666666555        899999999999998       


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                         ..|.++.--+....+|.|++|.|+.+.++.+-. +.+.|=.+.-...+...+.|.         +-|.++.|  ++.
T Consensus       133 ---rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W--~~~  197 (737)
T KOG1524|consen  133 ---RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD---------GLVLSLSW--STQ  197 (737)
T ss_pred             ---ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccC---------cEEEEeec--Ccc
Confidence               333444433455679999999998877666543 467776665544444455543         66999999  889


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      .+++++|++|-..++||-.. . ++..-..|+.+|++++|+|+ ..++.++.. +++            +.....+.|..
T Consensus       198 s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~~GSifn  261 (737)
T KOG1524|consen  198 SNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFN  261 (737)
T ss_pred             ccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCCccceEE
Confidence            99999999999999999775 2 46666779999999999999 566666643 333            33334688999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEE
Q 019405          307 IARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      ++|++||..++.|+..|.+.+=
T Consensus       262 lsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  262 LSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             EEEcCCCceeeccccCceEEEe
Confidence            9999999999999999977653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.4e-17  Score=126.71  Aligned_cols=201  Identities=15%  Similarity=0.228  Sum_probs=151.5

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .+|++..+|.|++||..+++.+..++.+.        ..+..+.+.+.+.      ...+.+++.||++++||++.... 
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~vrf~~~ds------~h~v~s~ssDG~Vr~wD~Rs~~e-  106 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGVRFISCDS------PHGVISCSSDGTVRLWDIRSQAE-  106 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCC--------CcccceEEecCCC------CCeeEEeccCCeEEEEEeecchh-
Confidence            58999999999999999999999998842        3344555555322      11899999999999999976542 


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC----CCeEEEEECCCCce-eeecCCCCCCccCccCCeeeeEEEE
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAF  221 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~  221 (341)
                           .....|....+.+..|++.+..++.+++|..    +-.|.+||++..++ +..+...        |..-|+++.|
T Consensus       107 -----~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS--------H~DDVT~lrF  173 (376)
T KOG1188|consen  107 -----SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES--------HNDDVTQLRF  173 (376)
T ss_pred             -----hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh--------ccCcceeEEe
Confidence                 2445565555567888888888888888754    56799999998766 4443322        4466999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~  296 (341)
                      + +.+.++|++|+.||.|.+||+.....  ++...-.|...|..+.|...+ +.|.+-+......+|+++.+.....+
T Consensus       174 H-P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  174 H-PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             c-CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            8 45778999999999999999986432  233333367789999998877 55888888999999999988755444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=2.1e-16  Score=142.15  Aligned_cols=287  Identities=14%  Similarity=0.153  Sum_probs=189.5

Q ss_pred             ceeeeecCCCCeEEEEEecCc--cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      --+++|+.||+||+|+..+..  ++..+-..+|......+.+++++..+.    .+|+++.||.|++.+++-....+...
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~----~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD----QFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC----eEEEEcCCCeEEEEEcccccccccee
Confidence            347899999999999998862  244555567766778888999888777    79999999999999987521111110


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee---cCCceEEEE
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAFSK  169 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---~~~~i~~~~  169 (341)
                      ...........+.++.+..+.....     ...++.+...+.+..||+.....          .|...   ..+.|++++
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~~~~~~-----S~~lvy~T~~~~iv~~D~r~~~~----------~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQ-----SHVLVYATDLSRIVSWDTRMRHD----------AWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             eeeecccccCCCceEEeeccccccc-----ceeEEEEEeccceEEecchhhhh----------HHhhhcCccccceeEEE
Confidence            0000001123355666666554441     13788888889999999865442          23332   246899999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec-CCCCEEEE-Ee-CCCeEEEEEcCC
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRKFVA-GT-NDHQVRLYDTSA  246 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~-~~-~d~~i~iwd~~~  246 (341)
                      .+|.++++++|+..|.+.+||++=+.++.....+.        ..++..+..+|- +.....++ +. ..+.|.+|++.+
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~--------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA--------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeecCceeecccCcc--------cCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            99999999999999999999999877776665443        244666665432 22234444 44 578899999998


Q ss_pred             CCceeEEEEec-C------------------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE--------------
Q 019405          247 QRRPVMSFDFR-E------------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--------------  293 (341)
Q Consensus       247 ~~~~~~~~~~~-~------------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--------------  293 (341)
                      +.+ ...+-.. .                  -......+..-+..+++|+.|..|+.||....+..              
T Consensus      1275 g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1275 GLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred             Ccc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence            754 2222211 0                  01112233334568899999999999997532111              


Q ss_pred             ---------------eE-------------------Ee-------ccccCceeEEEecCCC-CEEEEEeCCCcEEEEE
Q 019405          294 ---------------GC-------------------FI-------GKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD  329 (341)
Q Consensus       294 ---------------~~-------------------~~-------~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd  329 (341)
                                     ..                   ..       ..|..+|++|++.... .+|++++.||.|+||.
T Consensus      1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                           00                   00       1135688888876544 5899999999999994

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=3.4e-15  Score=130.13  Aligned_cols=255  Identities=22%  Similarity=0.291  Sum_probs=185.4

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      +..+...+..+.+.....    .++.++.|+.+.+|+...+. ....+....       ...+..+... ...     ..
T Consensus        61 ~~~~~~~i~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~-----~~  123 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE----LLLSGSSDGTIKLWDLDNGEKLIKSLEGLH-------DSSVSKLALS-SPD-----GN  123 (466)
T ss_pred             eeeccceEEEEEECCCCc----EEEEecCCCcEEEEEcCCCceeEEEEeccC-------CCceeeEEEE-CCC-----cc
Confidence            345677777777766665    78888899999999998776 445544421       1233333332 111     01


Q ss_pred             ceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecC
Q 019405          124 RTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       124 ~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~  201 (341)
                      ..++.. ..++.+.+|++..        ..........+...|..++++|++..+++++. ++.+++|++.++..+..+.
T Consensus       124 ~~~~~~~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
T COG2319         124 SILLASSSLDGTVKLWDLST--------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA  195 (466)
T ss_pred             eEEeccCCCCccEEEEEecC--------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence            134443 4488999999864        01222223346678889999999998888885 9999999999877777666


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .+.         ..+.+++|  .|++. .+++++.|+.|++||...+.. +. .+..|.... ...|+|++..+++++.|
T Consensus       196 ~~~---------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d  262 (466)
T COG2319         196 GHT---------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSD  262 (466)
T ss_pred             cCC---------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence            633         56999999  67887 555558999999999885543 44 577777665 44899999888899999


Q ss_pred             CCEEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          280 GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       280 g~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      +.+++|+.+.... +..+..| ...|.++.|+|++..+++++.|+.+++||..+......
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         263 GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             CcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            9999999987664 4445565 88999999999888888899999999999987765543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=2.8e-17  Score=124.02  Aligned_cols=245  Identities=15%  Similarity=0.108  Sum_probs=166.1

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      +-|+++++..|.++.|.+...     +....|+ .+...++-+.--+.+     .|.+-+.|+.+.+|++.-+..+..-.
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt~-----r~~~~~r~~g~~~it~lq~~p~d-----~l~tqgRd~~L~lw~ia~s~~i~i~S   94 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQTE-----RDLPLIRLFGRLFITNLQSIPND-----SLDTQGRDPLLILWTIAYSAFISIHS   94 (323)
T ss_pred             chhhhcccccceEEEEEeecC-----ccchhhhhhccceeeceeecCCc-----chhhcCCCceEEEEEccCcceEEEee
Confidence            456889999999999999987     3333555 355566555544433     38888899999999986532211100


Q ss_pred             --c----------cC-----------CC----------------------CCCCCCCceeeEeeeeccccccccccceeE
Q 019405           93 --N----------AG-----------DS----------------------GAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        93 --~----------~~-----------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                        .          +.           +.                      ...+..+.+.|..+--...     ..-.++
T Consensus        95 i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~-----s~~lll  169 (323)
T KOG0322|consen   95 IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG-----STFLLL  169 (323)
T ss_pred             eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc-----ceEEEE
Confidence              0          00           00                      0001122333333111111     112678


Q ss_pred             EEcccceeEEEEeeeccccc-ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC--ce----eeec
Q 019405          128 TCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EK----IWTA  200 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~-~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~----~~~~  200 (341)
                      +|.++|.+.+|++......- -.....+..-...|.+++.++.+.+....=++|+.+..+..|++...  ..    ...+
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l  249 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL  249 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence            89999999999997652110 00111222223456789999999887777788888888999988642  21    1222


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      +++           .+..+..  .||++.+|+++.|+.||+|..++.+ |+..++.|...|++++|+|+...+|+++.|+
T Consensus       250 knp-----------Gv~gvrI--RpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  250 KNP-----------GVSGVRI--RPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             cCC-----------CccceEE--ccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence            222           2777888  8999999999999999999999976 6999999999999999999999999999999


Q ss_pred             CEEEEEC
Q 019405          281 DLASVDI  287 (341)
Q Consensus       281 ~i~iwd~  287 (341)
                      .|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=4.7e-17  Score=134.33  Aligned_cols=247  Identities=13%  Similarity=0.103  Sum_probs=161.6

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      |...+.++.++....     ++..+.|..+.+|+--+......+...  ..     .-...+...+... ..+.....++
T Consensus        13 ~~e~vc~v~w~~~ee-----i~~~~dDh~~~~~~~~~~~s~~~~~~p--~d-----f~pt~~h~~~rs~-~~g~~~d~~~   79 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEE-----IYFVSDDHQIFKWSDVSRDSVEVAKLP--DD-----FVPTDMHLGGRSS-GGGKGSDTLL   79 (737)
T ss_pred             cceeEEeecccccce-----EEEeccCceEEEeecccchhhhhhhCC--cc-----cCCcccccccccc-CCCCCcceEE
Confidence            444455555544444     555555667666654444433333321  11     1111111221111 1122334788


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      .++.||.+.|.+-          .+.+..--..|.+.+.+-.|+|+|.-|++++.||.|++|.- +|-....+..     
T Consensus        80 i~s~DGkf~il~k----------~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q-----  143 (737)
T KOG1524|consen   80 ICSNDGRFVILNK----------SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQ-----  143 (737)
T ss_pred             EEcCCceEEEecc----------cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhh-----
Confidence            8999999988762          22222222246778999999999999999999999999984 3332222221     


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                          ....|.|++|  .|+.+.++.+. .+.+.|=-+..... +..++.|.+-|.++.|++...++++|+.|-..++||.
T Consensus       144 ----~~~~v~c~~W--~p~S~~vl~c~-g~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  144 ----NEESIRCARW--APNSNSIVFCQ-GGHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             ----cCceeEEEEE--CCCCCceEEec-CCeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence                1256999999  77777666553 45667666665444 7778999999999999999999999999999999997


Q ss_pred             CCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      . |+.+..-..| +.+|++++|+|+ ..++.+|.+ ++|+=..+.|..
T Consensus       216 ~-G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~n-t~R~~~p~~GSi  259 (737)
T KOG1524|consen  216 Q-GANLFTSAAE-EYAITSVAFNPE-KDYLLWSYN-TARFSSPRVGSI  259 (737)
T ss_pred             c-CcccccCChh-ccceeeeeeccc-cceeeeeee-eeeecCCCccce
Confidence            5 7777777777 899999999999 666666543 555544444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.2e-14  Score=108.81  Aligned_cols=278  Identities=14%  Similarity=0.109  Sum_probs=184.2

Q ss_pred             eeeeecCCCCeEEEEEecCc------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--
Q 019405           16 RALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--   87 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--   87 (341)
                      -++++..+|.|.++.+..-.      .|. ..+..+++|+++++.++|- |     .+|++|+ ||.|+=|.+.....  
T Consensus        24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~-d-----~~Lls~g-dG~V~gw~W~E~~es~   95 (325)
T KOG0649|consen   24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH-D-----DFLLSGG-DGLVYGWEWNEEEESL   95 (325)
T ss_pred             EEEEecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee-h-----hheeecc-CceEEEeeehhhhhhc
Confidence            37789999999998877531      222 2334567899999999977 2     2477777 69999998764322  


Q ss_pred             --hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405           88 --RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (341)
Q Consensus        88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i  165 (341)
                        ...++...+......+-+-+...+..+..+       .++.++.|+.+.-||++         +|++..---.|...+
T Consensus        96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~en-------Si~~AgGD~~~y~~dlE---------~G~i~r~~rGHtDYv  159 (325)
T KOG0649|consen   96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-------SILFAGGDGVIYQVDLE---------DGRIQREYRGHTDYV  159 (325)
T ss_pred             cchhhhhhcCccccCcccCCccceeEeccCCC-------cEEEecCCeEEEEEEec---------CCEEEEEEcCCccee
Confidence              111111111111012223334445554443       66677789999999995         445544333577889


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc-cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      .++........+++|+.||++++||.++++.+..+.........- ....||.+++.    +..++++|+ ...+.+|.+
T Consensus       160 H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~----~edWlvCGg-Gp~lslwhL  234 (325)
T KOG0649|consen  160 HSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV----NEDWLVCGG-GPKLSLWHL  234 (325)
T ss_pred             eeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec----cCceEEecC-CCceeEEec
Confidence            999886667789999999999999999999988877654332211 12367888877    677888775 457999999


Q ss_pred             CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCC
Q 019405          245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDS  323 (341)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg  323 (341)
                      +..+. ...+.. ..++..+.|-.+  .+++++..+.|.-|.+. |.+....+.. ....++..|+..- ++|-.++...
T Consensus       235 rsse~-t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s~  308 (325)
T KOG0649|consen  235 RSSES-TCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE-STACYSASWQTSPIKFISIAGFSN  308 (325)
T ss_pred             cCCCc-eEEEec-ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC-ccceeeecccCCceEEEEecccce
Confidence            98664 665553 357788888655  78888888899999774 6655555544 4456666665443 3455566666


Q ss_pred             cEEEE
Q 019405          324 YLRFW  328 (341)
Q Consensus       324 ~v~iw  328 (341)
                      .+.|+
T Consensus       309 ~~~i~  313 (325)
T KOG0649|consen  309 KLHIL  313 (325)
T ss_pred             eeeee
Confidence            67665

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=1e-17  Score=133.15  Aligned_cols=168  Identities=9%  Similarity=0.089  Sum_probs=134.1

Q ss_pred             ecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405          160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (341)
Q Consensus       160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  238 (341)
                      .|.++|..++|+| +.+.||+|+.|.+|.||.+..+.....+..+.  ..-.+|...|.-+.|+|. -.+.|++++.|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv--v~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn~  155 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV--VELYGHQRRVGLVQWHPT-APNVLLSAGSDNT  155 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce--EEEeecceeEEEEeeccc-chhhHhhccCCce
Confidence            3678899999998 56789999999999999997654444333211  112235577999999743 4568889999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      |.+||+.+++. +..+. |..-|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|....-..+.|-.++.++-|
T Consensus       156 v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  156 VSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence            99999999886 55666 99999999999999999999999999999999999999888885556677888889984444


Q ss_pred             Ee---CCCcEEEEEcCC
Q 019405          319 CG---LDSYLRFWDIKT  332 (341)
Q Consensus       319 ~~---~dg~v~iwd~~~  332 (341)
                      |-   .+..+-+||..+
T Consensus       234 Gfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNN  250 (472)
T ss_pred             ccccccccceeccCccc
Confidence            32   567899998765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=1.2e-15  Score=118.18  Aligned_cols=238  Identities=14%  Similarity=0.094  Sum_probs=154.7

Q ss_pred             eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--
Q 019405           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--  131 (341)
Q Consensus        54 ~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--  131 (341)
                      .++|..|.+    .+++|. |.-.+||+.+--+.....+.+      ..+-.++.+.+ ..+-        ..++|+.  
T Consensus        10 svs~NQD~S----cFava~-~~Gfriyn~~P~ke~~~r~~~------~~G~~~veMLf-R~N~--------laLVGGg~~   69 (346)
T KOG2111|consen   10 SVSFNQDHS----CFAVAT-DTGFRIYNCDPFKESASRQFI------DGGFKIVEMLF-RSNY--------LALVGGGSR   69 (346)
T ss_pred             EEEEccCCc----eEEEEe-cCceEEEecCchhhhhhhccc------cCchhhhhHhh-hhce--------EEEecCCCC
Confidence            377887777    577776 556899998642221111111      01111221111 1111        2223322  


Q ss_pred             ----cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC-CCceeeecCCCCCC
Q 019405          132 ----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKN  206 (341)
Q Consensus       132 ----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~  206 (341)
                          ...+.|||-.        ....+..  .....+|..+.+.++  .|++.- .+.|++|... +.+.++.+..... 
T Consensus        70 pky~pNkviIWDD~--------k~~~i~e--l~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-  135 (346)
T KOG2111|consen   70 PKYPPNKVIIWDDL--------KERCIIE--LSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-  135 (346)
T ss_pred             CCCCCceEEEEecc--------cCcEEEE--EEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-
Confidence                2567777721        1113333  233567888888754  455443 4589999987 5555655554321 


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-EE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LA  283 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-i~  283 (341)
                            |....+  ..|..+..+|+. |-.-|.|+|-|+...+. +-..+..|...|.+++.+-+|..+|+++..|+ ||
T Consensus       136 ------PkGlC~--~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  136 ------PKGLCS--LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             ------CCceEe--ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence                  122222  222334445554 44568999999987543 34778889999999999999999999999988 89


Q ss_pred             EEECCCCeEEeEEec-cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          284 SVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       284 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      |||..+|+++.+++- .....|++|+|||+..+|+.+|+-|+|+||.++..
T Consensus       208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999999999999863 33568999999999999999999999999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.5e-17  Score=127.78  Aligned_cols=250  Identities=16%  Similarity=0.198  Sum_probs=179.4

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC------cchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG------DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      +.+|.+.|.++.||.++.    +|++|+.|..+++|+++..      +++.....       +|...|.|+.+-..+.  
T Consensus        52 ~~~H~GCiNAlqFS~N~~----~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~--  118 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDR----FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENR--  118 (609)
T ss_pred             hhhhccccceeeeccCCe----EEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCe--
Confidence            346889999999998755    9999999999999998642      22222221       4667888998876666  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  197 (341)
                            .+.+|..++++..-+++...        .+.++.... .+.|+.+..+|..+.+++.+.++.|.+||.+..+.-
T Consensus       119 ------~~~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~  184 (609)
T KOG4227|consen  119 ------FLYSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP  184 (609)
T ss_pred             ------eEecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence                  89999999999999998655        677766433 468999999999999999999999999999865411


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE------------------------
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS------------------------  253 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------  253 (341)
                      ..+-.+..      .+.....+.|+ +....+|++.+..+-+.+||.+....++..                        
T Consensus       185 ~~~~~~AN------~~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~  257 (609)
T KOG4227|consen  185 ISLVLPAN------SGKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN  257 (609)
T ss_pred             CceeeecC------CCccceeeeec-CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence            11111100      12346777884 234567888888888999998753221100                        


Q ss_pred             -------------EEec-----------C-------CCeEEEEEcCCCceEEEEeCCCCEEEEECCC----------C--
Q 019405          254 -------------FDFR-----------E-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G--  290 (341)
Q Consensus       254 -------------~~~~-----------~-------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~--  290 (341)
                                   +..|           +       ..+.+++|-.+ ..+++|+.+-.|++|.+..          |  
T Consensus       258 Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~  336 (609)
T KOG4227|consen  258 QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHD  336 (609)
T ss_pred             eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcc
Confidence                         0011           1       12344555433 3588999999999997642          1  


Q ss_pred             -----------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          291 -----------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       291 -----------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                                 +.+..+++| ..-++.+.|+|...+|++.+-...++||.-
T Consensus       337 ~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  337 EEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             hhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence                       234567888 889999999999999999999999999964

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=5.6e-18  Score=146.46  Aligned_cols=260  Identities=12%  Similarity=0.082  Sum_probs=184.2

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .++.+|...|+|++|-..+.    ++++|+.|..++||..+++.++....+|        .+.+..++....+.      
T Consensus       184 krLlgH~naVyca~fDrtg~----~Iitgsdd~lvKiwS~et~~~lAs~rGh--------s~ditdlavs~~n~------  245 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGR----YIITGSDDRLVKIWSMETARCLASCRGH--------SGDITDLAVSSNNT------  245 (1113)
T ss_pred             HHHHhhhhheeeeeeccccc----eEeecCccceeeeeeccchhhhccCCCC--------ccccchhccchhhh------
Confidence            34557999999999887776    8999999999999999999999999884        46677777766555      


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                        .+++++.|..|++|.+....        .+.+.. .|.+.|++++|+|-.    +.+.||++++||.+-.-.+..-..
T Consensus       246 --~iaaaS~D~vIrvWrl~~~~--------pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp  310 (1113)
T KOG0644|consen  246 --MIAAASNDKVIRVWRLPDGA--------PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP  310 (1113)
T ss_pred             --hhhhcccCceEEEEecCCCc--------hHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCC
Confidence              88899999999999986543        333333 467899999999954    678899999999871111110000


Q ss_pred             CC---CC------------------ccCccCCeeeeEEEE-------E--ecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          203 PP---KN------------------SLGIFTPTWFTSAAF-------L--SIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       203 ~~---~~------------------~~~~~~~~~v~~~~~-------~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      ..   +.                  .-.......+.+++|       .  .+....+.+++-.+..+++|++.++.. ++
T Consensus       311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H  389 (1113)
T KOG0644|consen  311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LH  389 (1113)
T ss_pred             CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-hh
Confidence            00   00                  000000000111111       0  001112344455567788999998764 88


Q ss_pred             EEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          253 SFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .+.+|...+..+.++|-+ +...+++.||...|||+-.|.+++.+.-. ...+..-.|+++|..++....-|.++|...-
T Consensus       390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccC
Confidence            888999999999999965 55568899999999999988877665543 4677788999999999998888999998876


Q ss_pred             CCceee
Q 019405          332 TRQLLS  337 (341)
Q Consensus       332 ~~~~~~  337 (341)
                      .++...
T Consensus       469 qs~s~k  474 (1113)
T KOG0644|consen  469 QSKSQK  474 (1113)
T ss_pred             CCcccc
Confidence            655443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=7.7e-16  Score=138.54  Aligned_cols=271  Identities=17%  Similarity=0.193  Sum_probs=181.4

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      .++..+.+|...+.-++.+...   +.++++|+.||+|++||...-... .+++.  ....++.+.++.++.......  
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS--~ltys~~~sr~~~vt~~~~~~-- 1111 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARS--ELTYSPEGSRVEKVTMCGNGD-- 1111 (1431)
T ss_pred             eEeehhhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeee--eEEEeccCCceEEEEeccCCC--
Confidence            5677888899988877776554   348999999999999998642111 11111  001112346666666665555  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE-EecC-CCC-EEEEeeCCCeEEEEECCCCc
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS-KVDI-SEK-FSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~d~~v~i~d~~~~~  195 (341)
                            .++.++.||.+.+.+++..... ...-..++.-+....+.+..+ ++.. .+. .++.+..-+.|..||++...
T Consensus      1112 ------~~Av~t~DG~v~~~~id~~~~~-~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1112 ------QFAVSTKDGSVRVLRIDHYNVS-KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             ------eEEEEcCCCeEEEEEccccccc-cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence                  8999999999999998763211 001113344444444444433 3322 233 67888888999999999888


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCC---Cc
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPD---SF  271 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~  271 (341)
                      ..+.++....+       +.|++++.  +|.++++++|+..|.+.+||++-+. ++..+.. +..++..+..+|-   ..
T Consensus      1185 ~~w~lk~~~~h-------G~vTSi~i--dp~~~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1185 DAWRLKNQLRH-------GLVTSIVI--DPWCNWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             hHHhhhcCccc-------cceeEEEe--cCCceEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCc
Confidence            87777765432       66999999  8999999999999999999999643 5665542 4567888877763   23


Q ss_pred             eEEEEe--CCCCEEEEECCCCeEEeEEeccc------------------cCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          272 NIYIGN--GSGDLASVDIRTGKLLGCFIGKC------------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       272 ~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..++++  ..+.|.+|++.+|.+...+....                  .-......+...+.++++|+.|..||.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            444444  46889999999987665554320                  0111223333445689999999999999987


Q ss_pred             CCc
Q 019405          332 TRQ  334 (341)
Q Consensus       332 ~~~  334 (341)
                      ..+
T Consensus      1335 ~p~ 1337 (1431)
T KOG1240|consen 1335 RPE 1337 (1431)
T ss_pred             Ccc
Confidence            644

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=2.5e-14  Score=113.15  Aligned_cols=264  Identities=12%  Similarity=0.147  Sum_probs=176.7

Q ss_pred             eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC--CeEEEeeCCCCcchheeeccCC
Q 019405           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN--GLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      .|++|| .++++...-  +  +   .+....+.+.++-.-+..+    ++|..+.+  ..+++++.+.+..+..+...  
T Consensus        22 vGs~~G-yk~~~~~~~--~--k---~~~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp--   87 (391)
T KOG2110|consen   22 VGSKDG-YKIFSCSPF--E--K---CFSKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFKKKTTICEIFFP--   87 (391)
T ss_pred             ccCCCc-eeEEecCch--H--H---hhcccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcccCceEEEEecC--
Confidence            444555 355555543  1  1   2323344555555444444    55554443  45999999877777766652  


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                             .+|.++.....          +|+++-++. +.|+|+...+...     +|..|. .+...+..+.+++.+.+
T Consensus        88 -------t~IL~VrmNr~----------RLvV~Lee~-IyIydI~~MklLh-----TI~t~~-~n~~gl~AlS~n~~n~y  143 (391)
T KOG2110|consen   88 -------TSILAVRMNRK----------RLVVCLEES-IYIYDIKDMKLLH-----TIETTP-PNPKGLCALSPNNANCY  143 (391)
T ss_pred             -------CceEEEEEccc----------eEEEEEccc-EEEEecccceeeh-----hhhccC-CCccceEeeccCCCCce
Confidence                   55666655322          667666555 9999997655321     333332 13455777777777788


Q ss_pred             EEEe--eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe-EEEEEcCCCCceeEE
Q 019405          177 SLFG--GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMS  253 (341)
Q Consensus       177 l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~  253 (341)
                      ++.-  ...|.|.+||..+.+....+..|.         +.+.+++|  +++|.+||+++..|+ ||+|.+.++++ +..
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~---------~~lAalaf--s~~G~llATASeKGTVIRVf~v~~G~k-l~e  211 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHK---------GPLAALAF--SPDGTLLATASEKGTVIRVFSVPEGQK-LYE  211 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecC---------CceeEEEE--CCCCCEEEEeccCceEEEEEEcCCccE-eee
Confidence            8853  346899999999999988888765         66999999  999999999999997 68999998876 777


Q ss_pred             EEecC--CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe-------------------------------------EEe
Q 019405          254 FDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-------------------------------------LLG  294 (341)
Q Consensus       254 ~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-------------------------------------~~~  294 (341)
                      |+...  ..|.+++|+|++++|++.+..++|++|.+..-.                                     ...
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FA  291 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFA  291 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcccee
Confidence            76543  357889999999999999999999999775311                                     000


Q ss_pred             EEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          295 CFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       295 ~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ..+....+  .+..+.=.+..+++..++.||.++.|.+..
T Consensus       292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  292 TAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             EEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            01111011  233333234678899999999999998764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.7e-15  Score=132.03  Aligned_cols=287  Identities=14%  Similarity=0.117  Sum_probs=185.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      .+-+..+..|+++...+.     ..+..+.+|..++..+.+.+...+ ..++.+.+.||.|++||..++..++++.... 
T Consensus        30 ~l~~~~~~~V~VyS~~Tg-----~~i~~l~~~~a~l~s~~~~~~~~~-~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-  102 (792)
T KOG1963|consen   30 FLFLCTGNFVKVYSTATG-----ECITSLEDHTAPLTSVIVLPSSEN-ANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-  102 (792)
T ss_pred             EEEEeeCCEEEEEecchH-----hhhhhcccccCccceeeecCCCcc-ceEEEEEecCccEEEecCCCcEEEEEEecCC-
Confidence            333444556777777765     556678889999999888877764 3478899999999999999999988887632 


Q ss_pred             CCCCCCCCceeeEeeeecccccc-----ccc-cceeEEEccc--ceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREES-----SSR-SRTLLTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~l~~~~~~--g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                              ++..+.+.+......     +.. ...+.+.+.+  ++..=+.+....       ....-+...+ ..-.++
T Consensus       103 --------~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-------~~~~d~~~~~-~~~~~I  166 (792)
T KOG1963|consen  103 --------PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-------SAKGDFLKEH-QEPKSI  166 (792)
T ss_pred             --------ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-------ccchhhhhhh-cCCccE
Confidence                    122111111000000     000 0011111111  111111110000       0000001111 113466


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--  246 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--  246 (341)
                      ..++.+++.+..-.+ .+.+|+..+....  .....   ....|...+++.++  +|++++++++..||.|.+|.-..  
T Consensus       167 ~~~~~ge~~~i~~~~-~~~~~~v~~~~~~--~~~~~---~~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~  238 (792)
T KOG1963|consen  167 VDNNSGEFKGIVHMC-KIHIYFVPKHTKH--TSSRD---ITVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDFGSS  238 (792)
T ss_pred             EEcCCceEEEEEEee-eEEEEEeccccee--eccch---hhhhhcccceeEEe--ccccceEEEeccCCcEEEEeccccc
Confidence            777777776665554 6889998775521  11111   11223444889999  89999999999999999996433  


Q ss_pred             -CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcE
Q 019405          247 -QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (341)
Q Consensus       247 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v  325 (341)
                       .....+.+..|..+|.+++|+++|.+|++|+.+|.+.+|.+.+++. .-++.- .++|..+.++||+...+....|+.|
T Consensus       239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRL-gs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRL-GSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccccc-CCeeEEEEEcCCCCeEEEEecCceE
Confidence             1223567888999999999999999999999999999999999882 233333 7899999999999999999999999


Q ss_pred             EEEEcCCCcee
Q 019405          326 RFWDIKTRQLL  336 (341)
Q Consensus       326 ~iwd~~~~~~~  336 (341)
                      .+-...+....
T Consensus       317 ~li~~~dl~~k  327 (792)
T KOG1963|consen  317 HLIKASDLEIK  327 (792)
T ss_pred             EEEeccchhhh
Confidence            99887665443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=3.8e-17  Score=130.31  Aligned_cols=172  Identities=15%  Similarity=0.142  Sum_probs=139.5

Q ss_pred             cCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceee---ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405          161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  236 (341)
                      ...++..+.|.++.. .+++|+.|..|++|-+..++.-.   .+.-+   ..-..|...|+++.|  +|+|++|++|+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~---s~Ls~H~~aVN~vRf--~p~gelLASg~D~   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYL---SSLSRHTRAVNVVRF--SPDGELLASGGDG   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEe---ecccCCcceeEEEEE--cCCcCeeeecCCC
Confidence            467899999988766 99999999999999887543221   00000   011124577999999  9999999999999


Q ss_pred             CeEEEEEcC--------C-----CC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405          237 HQVRLYDTS--------A-----QR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       237 ~~i~iwd~~--------~-----~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      |.|.+|...        +     .+  ...+.+.+|...|..++|+|++.++++++.|+.+++||+..|+.+..+..| .
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~  165 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-E  165 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-c
Confidence            999999765        2     00  123456679999999999999999999999999999999999999999998 8


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .-+..++|.|-++++++-+.|...+.+.+...+.++.
T Consensus       166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~  202 (434)
T KOG1009|consen  166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR  202 (434)
T ss_pred             cccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence            9999999999999999999999888888876655543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4e-17  Score=133.15  Aligned_cols=268  Identities=18%  Similarity=0.244  Sum_probs=182.3

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .++..|.+.|..|.|...+.    .|++|+.|..|.+||+..++....+..       +|...+....+++..+      
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd----~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~------  198 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGD----VLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSG------  198 (559)
T ss_pred             hcccCCCCccceeeecccCc----eeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCC------
Confidence            45667999999888887666    899999999999999998877766654       2333333333433322      


Q ss_pred             cceeEEEcccceeEEEEeeeccc---------------------------ccccCCceEEEEEeecC-------------
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKV---------------------------SAESSCSTVKSWNVCAS-------------  162 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~-------------  162 (341)
                      +..+++++.||.+++-.+.....                           .+.+.|+.+.-+++...             
T Consensus       199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence            22555555555555444322110                           12334444443333221             


Q ss_pred             C---ceEEEEecCCC-CEEEEeeCCCeEEEEECCCCcee------eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          163 G---TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI------WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       163 ~---~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      .   ....++.+|.. ..+++++.|..+++||.+.-...      ..+..+.   +....+..|++++|  +.++.-|++
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Y--sh~~sElLa  353 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVY--SHDGSELLA  353 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEe--cCCccceee
Confidence            1   35667777755 47889999999999998753221      2222111   11123466999999  767777777


Q ss_pred             EeCCCeEEEEEcCCCC-----------ceeEE-EEecCC--CeEEEEE-cCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          233 GTNDHQVRLYDTSAQR-----------RPVMS-FDFRET--PIKAVAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~~-----------~~~~~-~~~~~~--~v~~~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      +..|-.|++|.-..+.           ..+.. +++|..  .|..+-| -|...++++|+.-|.|.||+-.+++.+.-+.
T Consensus       354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me  433 (559)
T KOG1334|consen  354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME  433 (559)
T ss_pred             eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence            7889999999533211           11223 677754  4666655 6888999999999999999999999999898


Q ss_pred             ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      +. ..-|+||.=+|--++||+++.|..|+||-..+.
T Consensus       434 gD-r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  434 GD-RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cc-cceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            87 569999999999999999999999999987443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=6.1e-16  Score=133.92  Aligned_cols=238  Identities=15%  Similarity=0.133  Sum_probs=167.2

Q ss_pred             CCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCc
Q 019405           74 NGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        74 dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~  152 (341)
                      ++.+.||++.+. .+...+..         ...+.++.+.+.+..       .++.|..+|.+.+||+......-   ..
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~---------~s~v~~~~f~p~~p~-------ll~gG~y~GqV~lWD~~~~~~~~---~s  281 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLES---------PSEVTCLKFCPFDPN-------LLAGGCYNGQVVLWDLRKGSDTP---PS  281 (555)
T ss_pred             CceEEEEecCCCCCceEEEec---------CCceeEEEeccCCcc-------eEEeeccCceEEEEEccCCCCCC---Cc
Confidence            358999999875 33333332         367888888777664       88999999999999997665310   11


Q ss_pred             eEEEEEeecCCceEEEEecCCC--CEEEEeeCCCeEEEEECCCCce-eee--cCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405          153 TVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEK-IWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (341)
                      .+..-...|..++..+.|-.+.  .-+++++.||.|..|+++.... ...  ................++++.|. ..+.
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p  360 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDP  360 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCC
Confidence            3444455677888888886543  4599999999999998864322 111  11111001111123558899996 4566


Q ss_pred             CEEEEEeCCCeEEEEEcCC---CC----ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEecc
Q 019405          228 RKFVAGTNDHQVRLYDTSA---QR----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGK  299 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~  299 (341)
                      +.+++|+.+|.|..=+...   ..    .+...+..|.++|+++.++|=+..++..+.|.+++||... ...++..+..+
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~  440 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS  440 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence            7899999999987733332   22    1233556688999999999987666655559999999988 66777777776


Q ss_pred             ccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405          300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                       ...|++++|||... .|+++..||.|.+||+..
T Consensus       441 -~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  441 -PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             -cceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence             67799999999886 788888999999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=6.5e-16  Score=131.00  Aligned_cols=238  Identities=11%  Similarity=0.104  Sum_probs=179.2

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      .+.-++|.||++    .|+.+. +..+.|||+.+|..+.++++|        .+.+.|++|....+        .+++|+
T Consensus        14 ci~d~afkPDGs----qL~lAA-g~rlliyD~ndG~llqtLKgH--------KDtVycVAys~dGk--------rFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGT----QLILAA-GSRLLVYDTSDGTLLQPLKGH--------KDTVYCVAYAKDGK--------RFASGS   72 (1081)
T ss_pred             chheeEECCCCc----eEEEec-CCEEEEEeCCCcccccccccc--------cceEEEEEEccCCc--------eeccCC
Confidence            778889988888    455544 579999999999999999985        47788888877777        999999


Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                      .|..+.+|+-..        +|.+   ...|+..|.|+.|+|-...+++++.+ ..-+|..+......    +.      
T Consensus        73 aDK~VI~W~~kl--------EG~L---kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K----~k------  130 (1081)
T KOG1538|consen   73 ADKSVIIWTSKL--------EGIL---KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK----HK------  130 (1081)
T ss_pred             CceeEEEecccc--------ccee---eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh----hh------
Confidence            999999998542        2233   33578899999999999999999876 47788776432221    11      


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCC-----ceEEEEeCCCCEE
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDS-----FNIYIGNGSGDLA  283 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~l~~g~~dg~i~  283 (341)
                       ....+.+++|  ..||.+++.|-.||+|.+-+-...+. +..-+  +.+++|++++|+|..     ..+++.....++.
T Consensus       131 -ss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS  206 (1081)
T KOG1538|consen  131 -SSSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS  206 (1081)
T ss_pred             -hheeEEEeee--cCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence             1255889999  89999999999999999986554222 33222  367899999999853     5677888888888


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++.+. |+.+..-+.- .-.-.++.+.++|.+++.|+.|+.+++|.-+ |-.+.+
T Consensus       207 Fy~Ls-G~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGT  258 (1081)
T KOG1538|consen  207 FYQLS-GKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGT  258 (1081)
T ss_pred             EEEec-ceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEeec-CeEEee
Confidence            88774 6665543332 3345688999999999999999999998643 555544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=2.8e-16  Score=132.38  Aligned_cols=240  Identities=14%  Similarity=0.114  Sum_probs=165.8

Q ss_pred             eEEE--EccCCeEEEeeCCC-Ccchh-eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405           67 LLAV--ARKNGLTDILNPLN-GDLRV-AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (341)
Q Consensus        67 ~l~~--~~~dg~i~iw~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~  142 (341)
                      ++|+  ++..|.|-||++.. |+.-. .+...      .....++.+.|-+-+..       .|++++.||.|.+|.+..
T Consensus       593 rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdPFD~~-------rLAVa~ddg~i~lWr~~a  659 (1012)
T KOG1445|consen  593 RVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDPFDDE-------RLAVATDDGQINLWRLTA  659 (1012)
T ss_pred             eEEEEecCCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCCCChH-------HeeecccCceEEEEEecc
Confidence            4555  56679999999865 22211 11111      13356777777666554       899999999999999875


Q ss_pred             cccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (341)
Q Consensus       143 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (341)
                      +..... ....-.+.. .|...|+++.|+| ..+.|++++.|-+|++||+.+++....+.+|.         +.|..++|
T Consensus       660 ~gl~e~-~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt---------dqIf~~AW  728 (1012)
T KOG1445|consen  660 NGLPEN-EMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT---------DQIFGIAW  728 (1012)
T ss_pred             CCCCcc-cCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc---------CceeEEEE
Confidence            543211 111122222 3678899999999 45788999999999999999999888888865         66999999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCC----CCEEEEECCCC--eEEe
Q 019405          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLG  294 (341)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~--~~~~  294 (341)
                        +|+|+++++.+.||+|++|+.+..+.++..-.+-. ..--.+.|.-+|+++++.+.|    ..|.+||.++-  ..+.
T Consensus       729 --SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~  806 (1012)
T KOG1445|consen  729 --SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY  806 (1012)
T ss_pred             --CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence              99999999999999999999998777665543321 223357788899998887766    45888988753  3333


Q ss_pred             EEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405          295 CFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       295 ~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                      +..-...-.+.--.+.+|.. +|++|-.|..|.+|.+-.
T Consensus       807 t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  807 TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             eeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence            32211011122223445555 677888899999998754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=2.2e-15  Score=115.42  Aligned_cols=116  Identities=21%  Similarity=0.338  Sum_probs=93.3

Q ss_pred             eeeeEEEEEecCCCCEEEEE--eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECC
Q 019405          214 TWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIR  288 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~  288 (341)
                      +.|.+++|  +|+++.|++.  ..++.|.+||++. + ++..+  +...+..+.|+|+|++|++++.+   |.|.+||.+
T Consensus        60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            45999999  8999887654  4567999999973 3 35554  45678899999999999998754   669999999


Q ss_pred             CCeEEeEEeccccCceeEEEecCCCCEEEEEeC------CCcEEEEEcCCCceeeee
Q 019405          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+.+..+..   ..++.++|+|+|++|+++..      |+.++||+.. |+++.+.
T Consensus       134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  134 KKKKISTFEH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCEEeecccc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            9999887753   35789999999999998874      7899999995 7776653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=3.8e-17  Score=132.49  Aligned_cols=224  Identities=8%  Similarity=0.076  Sum_probs=174.6

Q ss_pred             CCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEe
Q 019405           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (341)
Q Consensus        61 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~  140 (341)
                      ...+|.+|+.|+.-|.|..+|+.+++...++...         ..+..+.|+...         .+++......+.|||=
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHne---------q~~AVAQK~y~yvYD~  198 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNE---------QFFAVAQKKYVYVYDN  198 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcch---------HHHHhhhhceEEEecC
Confidence            3444559999999999999999999988888763         445556666554         4555556677777762


Q ss_pred             eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEE
Q 019405          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (341)
                      .           -+.+..+.....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....         +.+..++
T Consensus       199 ~-----------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~vm~  258 (545)
T KOG1272|consen  199 N-----------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTDVMK  258 (545)
T ss_pred             C-----------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccchhh
Confidence            2           1233334445678889999988899999999999999999999988877654         3355555


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc
Q 019405          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (341)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  300 (341)
                      -  +|-+..+-+|..+|+|.+|.....+ |+..+..|.++|.++++.++|+++++.+.|..++|||++....+.++..  
T Consensus       259 q--NP~NaVih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--  333 (545)
T KOG1272|consen  259 Q--NPYNAVIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--  333 (545)
T ss_pred             c--CCccceEEEcCCCceEEecCCCCcc-hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--
Confidence            5  7777888999999999999988744 6777778999999999999999999999999999999999887777665  


Q ss_pred             cCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          301 SGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ..+...+++|..|  +++.+....|.||.
T Consensus       334 p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  334 PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             CCCcccccccccc--ceeeecCCeeeeeh
Confidence            2467778888666  44555666899994

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=5e-15  Score=122.53  Aligned_cols=178  Identities=15%  Similarity=0.195  Sum_probs=136.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      -|+.|-.-|.|.+.|....+..+.+.....    -....++|+.|.+..+.       .++++..+|.+.+++.+..-.+
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~----i~ktsvT~ikWvpg~~~-------~Fl~a~~sGnlyly~~~~~~~~  255 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERL----INKSSVTCIKWVPGSDS-------LFLVAHASGNLYLYDKEIVCGA  255 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhccc----ccccceEEEEEEeCCCc-------eEEEEEecCceEEeeccccccC
Confidence            488888889999999876433332322111    13378899999988775       8899999999999976432111


Q ss_pred             --------------------cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          147 --------------------AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       147 --------------------~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                                          .-...+++..|... .+.|..++|+|||++||+.+.||.++|||..+.+.+-.++.--  
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF--  332 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF--  332 (636)
T ss_pred             CCCcccccCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc--
Confidence                                11133566667664 3489999999999999999999999999999877665544322  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  268 (341)
                             +...|++|  +|||++|++|++|..|.||.+...+ .+..-++|.++|..++|.|
T Consensus       333 -------GGLLCvcW--SPDGKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  333 -------GGLLCVCW--SPDGKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             -------cceEEEEE--cCCccEEEecCCcceEEEEEeccce-EEEeccccccceeeEeecc
Confidence                   44899999  9999999999999999999999855 4788889999999999987

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.4e-14  Score=122.86  Aligned_cols=291  Identities=12%  Similarity=0.069  Sum_probs=189.4

Q ss_pred             ceeeeecCCCCeEEEEEec-CccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .-+.+++.||.|.+|+-.. +..........|  |...|.+++|+.++.    +|++|+..|.+.+|..++++ .+-+..
T Consensus       218 ~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~----~LlSGG~E~VLv~Wq~~T~~-kqfLPR  290 (792)
T KOG1963|consen  218 RYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGA----YLLSGGREGVLVLWQLETGK-KQFLPR  290 (792)
T ss_pred             ceEEEeccCCcEEEEeccccccccccceEEEe--cccccceeEEecCCc----eEeecccceEEEEEeecCCC-cccccc
Confidence            3467889999999998665 211211222345  889999999999888    89999999999999999887 222222


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-ccccCCceE-EEEEeecCCceEEEEec
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSCSTV-KSWNVCASGTIAFSKVD  171 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-~~~~~~~~v-~~~~~~~~~~i~~~~~~  171 (341)
                              -..++..+.+.+...        ......+|..+.+........ .+.+.-... ........+-.+.+.++
T Consensus       291 --------Lgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id  354 (792)
T KOG1963|consen  291 --------LGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID  354 (792)
T ss_pred             --------cCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence                    236677777776555        777778899888887532211 100000000 00011123346678889


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc--cCccCCeeeeEEEEEecCCCCEEEEEeC--------C--CeE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--LGIFTPTWFTSAAFLSIDDHRKFVAGTN--------D--HQV  239 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------d--~~i  239 (341)
                      |..+.++-.+..+.|.+||+-+.+.+..+.....+.  -...+...++.++.  +..|++++|...        |  -.+
T Consensus       355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~--~~~gs~maT~E~~~d~~~~~~~e~~L  432 (792)
T KOG1963|consen  355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR--SRFGSWMATLEARIDKFNFFDGEVSL  432 (792)
T ss_pred             CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh--hccceEEEEeeeeehhhhccCceEEE
Confidence            988888889999999999998877766554321111  01122345677776  667888888532        2  257


Q ss_pred             EEEEcCCCCc----eeEEEEecCCCeEEEEEcC-CC-ceEEEEeCCCCEEEEECCCC----------eEEeEEeccccCc
Q 019405          240 RLYDTSAQRR----PVMSFDFRETPIKAVAEEP-DS-FNIYIGNGSGDLASVDIRTG----------KLLGCFIGKCSGS  303 (341)
Q Consensus       240 ~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~-~~-~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~~~~~~  303 (341)
                      ++|-.....+    .......|...+...++.+ .. ..+++++.||.++||-+...          .+...-..| ..+
T Consensus       433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~  511 (792)
T KOG1963|consen  433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTP  511 (792)
T ss_pred             EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc-cCc
Confidence            8887665332    1222345777666666543 33 37889999999999987322          121111123 789


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +++++|+.||..| +.+.|+.|.+||..+
T Consensus       512 i~a~~fs~dGsll-a~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  512 ITALCFSQDGSLL-AVSFDDTITIWDYDT  539 (792)
T ss_pred             ccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence            9999999999555 566888999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=1.5e-13  Score=115.71  Aligned_cols=235  Identities=12%  Similarity=0.074  Sum_probs=142.0

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE-EcccceeEEEEeeecccc
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~i~~~~~~~~~  146 (341)
                      +++...++.|++|++.+...+..++..      +..+....+.+.+..+        .|++ +..++.+.+|+++.    
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~------~~~~~~~~l~~spd~~--------~lyv~~~~~~~i~~~~~~~----   66 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV------DVPGQVQPMVISPDKR--------HLYVGVRPEFRVLSYRIAD----   66 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE------ecCCCCccEEECCCCC--------EEEEEECCCCcEEEEEECC----
Confidence            344467899999999643222222221      0112333444433333        4444 45678888898852    


Q ss_pred             cccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          147 AESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       147 ~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                          ++.+.... ....+....+.++|+++++++++. ++.|.+|++++.. .........       ......++++  
T Consensus        67 ----~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~--  133 (330)
T PRK11028         67 ----DGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------GLEGCHSANI--  133 (330)
T ss_pred             ----CCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------CCCcccEeEe--
Confidence                11222111 122345678999999998887764 7899999996422 111111000       0122566778  


Q ss_pred             cCCCCEEEEE-eCCCeEEEEEcCCCCcee----EEEE-ecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC--C--eE
Q 019405          224 IDDHRKFVAG-TNDHQVRLYDTSAQRRPV----MSFD-FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--G--KL  292 (341)
Q Consensus       224 ~~~~~~l~~~-~~d~~i~iwd~~~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~--~--~~  292 (341)
                      +|++++++++ ..++.|.+||+.+.....    .... ........++|+|++++++++.. ++.|.+|++..  +  +.
T Consensus       134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence            8899888654 456999999998633211    0111 11234568999999999988876 89999999973  3  33


Q ss_pred             EeEEecc-----ccCceeEEEecCCCCEEEEEeC-CCcEEEEEcCCC
Q 019405          293 LGCFIGK-----CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTR  333 (341)
Q Consensus       293 ~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~  333 (341)
                      +..+...     .......+.++|++++|+++.. ++.|.+|++.+.
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            4443321     0112336889999998888854 789999998643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=6.2e-15  Score=123.45  Aligned_cols=243  Identities=15%  Similarity=0.125  Sum_probs=163.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec-
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-   93 (341)
                      ..+.+|+.||++++|++...     .++.++ ..+..|.+++|++...-.  .||++- ...+.|-+..-|..+..... 
T Consensus       413 ~wlasGsdDGtvriWEi~Tg-----Rcvr~~-~~d~~I~~vaw~P~~~~~--vLAvA~-~~~~~ivnp~~G~~~e~~~t~  483 (733)
T KOG0650|consen  413 EWLASGSDDGTVRIWEIATG-----RCVRTV-QFDSEIRSVAWNPLSDLC--VLAVAV-GECVLIVNPIFGDRLEVGPTK  483 (733)
T ss_pred             ceeeecCCCCcEEEEEeecc-----eEEEEE-eecceeEEEEecCCCCce--eEEEEe-cCceEEeCccccchhhhcchh
Confidence            45788999999999999987     666666 456789999999877632  455555 44477777654522211100 


Q ss_pred             -----c----CCC----CCC---------------CCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeee
Q 019405           94 -----A----GDS----GAQ---------------PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEV  142 (341)
Q Consensus        94 -----~----~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~  142 (341)
                           .    .+.    ..+               .+.+.+..+.|...+.        +|++...+   ..+.|..+..
T Consensus       484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD--------YlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD--------YLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc--------eEEEeccCCCcceEEEEeccc
Confidence                 0    000    000               1334455566655555        67666553   4556666654


Q ss_pred             ccccc----------------------ccCCceEEEEEeecC----------CceEEEEecCCCCEEEEeeCCCeEEEEE
Q 019405          143 TKVSA----------------------ESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWD  190 (341)
Q Consensus       143 ~~~~~----------------------~~~~~~v~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~d~~v~i~d  190 (341)
                      ...-.                      .+....|++|++...          ..|..++++|.|..|+.++.|+.+..||
T Consensus       556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfD  635 (733)
T KOG0650|consen  556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFD  635 (733)
T ss_pred             ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence            32210                      113334556655332          3577889999999999999999999999


Q ss_pred             CCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--------CceeEEEEecCCC-
Q 019405          191 LDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--------RRPVMSFDFRETP-  260 (341)
Q Consensus       191 ~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~-  260 (341)
                      +.-. ++.+.+..|.         ..+++++|  ++.-.++++|+.||++.||--.-.        -.|++.+.+|... 
T Consensus       636 ldlsskPyk~lr~H~---------~avr~Va~--H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  636 LDLSSKPYKTLRLHE---------KAVRSVAF--HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             cccCcchhHHhhhhh---------hhhhhhhh--ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence            8743 4455555543         66999999  778899999999999998853211        1367788888655 


Q ss_pred             ---eEEEEEcCCCceEEEEeCCCCEEEE
Q 019405          261 ---IKAVAEEPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       261 ---v~~~~~~~~~~~l~~g~~dg~i~iw  285 (341)
                         |..+.|+|...+|++++.||+|++|
T Consensus       705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  705 DLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccceEeecccCCCceEEecCCCceEEee
Confidence               8889999999999999999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=2.1e-14  Score=113.38  Aligned_cols=237  Identities=13%  Similarity=0.115  Sum_probs=157.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .+|++..|..|++|+-.. ++...++.       .....+.|++|-+....       .++.+.. +-+.||..+.....
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsas-------elavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSAS-------ELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCcc-------eeeeeec-ceeEEEEcCccccc
Confidence            488899999999999865 55555554       35578999999877663       5555554 55889987654432


Q ss_pred             c----ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405          147 A----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (341)
Q Consensus       147 ~----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (341)
                      .    ........+.......+|++++|++||..+++++. |..|.|||..++..+.-....         .+.+.-+.|
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g---------lgg~slLkw  246 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG---------LGGFSLLKW  246 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC---------CCceeeEEE
Confidence            1    11223334444444568999999999999998775 568999999988765433221         144788999


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC----C-------
Q 019405          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----G-------  290 (341)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----~-------  290 (341)
                        +|++.+|..+.-|+..++|+........+ .....+.|...+|+|+|+.|+-.+. |.-++|.+.-    .       
T Consensus       247 --SPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~  322 (445)
T KOG2139|consen  247 --SPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS  322 (445)
T ss_pred             --cCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence              99999999999999999996554332122 2223458999999999977654432 2333443321    0       


Q ss_pred             ----eEEeEEe------c--cccCceeEEEecCCCCEEEEEeCCC--------cEEEEEcCC
Q 019405          291 ----KLLGCFI------G--KCSGSIRSIARHPTLPIIASCGLDS--------YLRFWDIKT  332 (341)
Q Consensus       291 ----~~~~~~~------~--~~~~~i~~~~~~~~~~~l~s~~~dg--------~v~iwd~~~  332 (341)
                          .++..+.      +  -..+++.+++|.|.|.+||..-..+        .|.+||.+.
T Consensus       323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence                0111111      0  0146789999999999999875444        356676654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=1.2e-13  Score=116.38  Aligned_cols=293  Identities=13%  Similarity=0.083  Sum_probs=168.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchheeecc
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      .++..+.||.+.++++.+.     +++.+...... ...+++|+|++    +++++. .++.+.|+|.++.+.++.+...
T Consensus        50 ~~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~-~~~i~~s~DG~----~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   50 YLYVANRDGTVSVIDLATG-----KVVATIKVGGN-PRGIAVSPDGK----YVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEEEEETTSEEEEEETTSS-----SEEEEEE-SSE-EEEEEE--TTT----EEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             EEEEEcCCCeEEEEECCcc-----cEEEEEecCCC-cceEEEcCCCC----EEEEEecCCCceeEeccccccceeecccc
Confidence            3556677899999999887     66666644333 34577776666    887765 6899999999999988887652


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      ..... ....++..+...+...        .++..- +.+.+.+.+....        ..+..-............|+|+
T Consensus       120 ~~~~~-~~~~Rv~aIv~s~~~~--------~fVv~lkd~~~I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  120 GMPVD-GPESRVAAIVASPGRP--------EFVVNLKDTGEIWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPD  182 (369)
T ss_dssp             EE-TT-TS---EEEEEE-SSSS--------EEEEEETTTTEEEEEETTTS--------SCEEEEEEE--TTEEEEEE-TT
T ss_pred             ccccc-ccCCCceeEEecCCCC--------EEEEEEccCCeEEEEEeccc--------cccceeeecccccccccccCcc
Confidence            11100 0123344444433333        444443 3466655553321        1333333344566778899999


Q ss_pred             CCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCc----cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNS----LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       174 ~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      +++++.+ ..++.|-++|.++++....+.......    ..+.|+..  ...|.....+...++.-....+.+||....+
T Consensus       183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk  260 (369)
T PF02239_consen  183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--GPVWATSGLGYFAIPLIGTDPVSVHDDYAWK  260 (369)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--EEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred             cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--ceEEeeccccceecccccCCccccchhhcCe
Confidence            9987664 556799999999988776654422110    01111110  1112101123333333333456678888766


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEE----eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC-
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-  323 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-  323 (341)
                      . ++.+.....+ ..+..+|+++++.+.    ...+.|.++|.++.+.+..+.......+..+.|+++|+.+..+..++ 
T Consensus       261 v-v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  261 V-VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             E-EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             E-EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence            4 8888876666 788899999999988    44588999999999888877643234699999999999766555443 


Q ss_pred             -cEEEEEcCCCceeeee
Q 019405          324 -YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       324 -~v~iwd~~~~~~~~~~  339 (341)
                       .|.+||.++.+.+.++
T Consensus       339 ~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  339 GAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             TEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCcEEEEEE
Confidence             6999999999998876

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=5.4e-15  Score=117.71  Aligned_cols=208  Identities=12%  Similarity=0.063  Sum_probs=153.9

Q ss_pred             eEEEEccCCeEEEeeCCCCcc----hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc--ceeEEEEe
Q 019405           67 LLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSI  140 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~i~~~  140 (341)
                      .|+++..+|.+.+|..+.+..    +..+..+         .++..+.-.+...       ..+++|+..  ..+.||++
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g---------~g~~~~r~~~~~p-------~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG---------PGLYDVRQTDTDP-------YIVATGGKENINELKIWDL  180 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeecC---------CceeeeccCCCCC-------ceEecCchhcccceeeeec
Confidence            588889999999999885432    2222221         2233333333322       156668888  88999998


Q ss_pred             eecccccccCCceEEEEEeecC----------CceEEEEecCC--CCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCc
Q 019405          141 EVTKVSAESSCSTVKSWNVCAS----------GTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNS  207 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~----------~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~  207 (341)
                      +..          ..+|....-          -.++.+.|-+.  ...|++++.-++|++||.+.+ +++..+....   
T Consensus       181 e~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E---  247 (412)
T KOG3881|consen  181 EQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE---  247 (412)
T ss_pred             ccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence            654          345544321          13456777776  788999999999999999854 4555555433   


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                            ..++++..  .|+++++++|..-+.+..||++.++.+...+.+-.+.|+++..+|..+++++++-|..|+|+|+
T Consensus       248 ------~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  248 ------NPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ------Ccceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence                  55888888  7899999999999999999999987656668888899999999999999999999999999999


Q ss_pred             CCCeEEeEEeccccCceeEEEecCCC
Q 019405          288 RTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      ++.+++.....  ...++++.+.++-
T Consensus       320 ktrkll~kvYv--Ks~lt~il~~~~~  343 (412)
T KOG3881|consen  320 KTRKLLHKVYV--KSRLTFILLRDDV  343 (412)
T ss_pred             ccchhhhhhhh--hccccEEEecCCc
Confidence            99877765543  4567777776543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=4.3e-15  Score=115.32  Aligned_cols=206  Identities=11%  Similarity=0.058  Sum_probs=156.5

Q ss_pred             CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  183 (341)
                      .+|.|.+|.+...        .++.+..++.+.|+.......     -...+... .|...|+.++|+|..+.|++|+.|
T Consensus        11 ~pitchAwn~drt--------~iAv~~~~~evhiy~~~~~~~-----w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   11 EPITCHAWNSDRT--------QIAVSPNNHEVHIYSMLGADL-----WEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             CceeeeeecCCCc--------eEEeccCCceEEEEEecCCCC-----ceeceehh-hhCcceeEEeecCCCCceeEccCC
Confidence            6788888877666        889999999999998764331     12333333 356789999999999999999999


Q ss_pred             CeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCC
Q 019405          184 VEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRET  259 (341)
Q Consensus       184 ~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~  259 (341)
                      ..-++|.... ++-...+..       +++....+++.|  +|.++.|++|+.-+.|.||-++..+.-   .+.-+.+.+
T Consensus        77 rnayVw~~~~~~~WkptlvL-------lRiNrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS  147 (361)
T KOG1523|consen   77 RNAYVWTQPSGGTWKPTLVL-------LRINRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS  147 (361)
T ss_pred             CCccccccCCCCeeccceeE-------EEeccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence            9999999843 221111111       112355899999  899999999999999999988764320   122344667


Q ss_pred             CeEEEEEcCCCceEEEEeCCCCEEEEECC------------------CCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIR------------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      .|+++.|+|++-+|++|+.|+..++|..-                  -|+++.++... .+.|..+.|+|+|..|+-.+.
T Consensus       148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCCCCEeeEecC
Confidence            89999999999999999999999999642                  12344445333 689999999999999999999


Q ss_pred             CCcEEEEEcCCC
Q 019405          322 DSYLRFWDIKTR  333 (341)
Q Consensus       322 dg~v~iwd~~~~  333 (341)
                      |+.+.+=|....
T Consensus       227 ds~v~~~da~~p  238 (361)
T KOG1523|consen  227 DSTVSFVDAAGP  238 (361)
T ss_pred             CCceEEeecCCC
Confidence            999999887654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=2e-16  Score=128.33  Aligned_cols=191  Identities=19%  Similarity=0.213  Sum_probs=160.2

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++.++..|.+..+|.....+        .  +.+.-...|..+.|-.+.+++|++ ....++|||- .|..+..+..+ 
T Consensus       143 hlllgGrKGHlAa~Dw~t~~L--------~--~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~~-  209 (545)
T KOG1272|consen  143 HLLLGGRKGHLAAFDWVTKKL--------H--FEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKRH-  209 (545)
T ss_pred             EEEecCCccceeeeeccccee--------e--eeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhhc-
Confidence            888888889998888765442        2  222234567888888888887765 5568999995 57777776654 


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                               ..|..+.|  -|..-+|++++..|.++.-|+.+++. +..+....+.+..++-+|-+..+-+|...|+|.+
T Consensus       210 ---------~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl  277 (545)
T KOG1272|consen  210 ---------IRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL  277 (545)
T ss_pred             ---------Cchhhhcc--cchhheeeecccCCceEEEeechhhh-hHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence                     44888899  57788999999999999999999885 8888878888999999999989999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeecC
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVCS  341 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~s  341 (341)
                      |.....+++..+..| .++|.++++.++|++++|++.|..++|||++....+.++++
T Consensus       278 WSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             cCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            999999999999888 99999999999999999999999999999999888877764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.3e-15  Score=124.86  Aligned_cols=234  Identities=13%  Similarity=0.104  Sum_probs=162.5

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..+.+|++.|+++.|+.++.    +|++|+.|-.+.|||+-..+.+..+..       +|...|-+..+.+...+.    
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~----lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnr----  108 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE----LLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNR----  108 (758)
T ss_pred             hhhccccceecceeecCCCC----EEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCe----
Confidence            34678999999999888777    999999999999999988888887775       577889899998876643    


Q ss_pred             cceeEEEcccceeEEEEeeeccccc--ccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeee
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSA--ESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~--~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                        .+++|..|..|+++++...+...  -....+.+.|.- |...|..++..|++ +.+.+++.||+|+.||++.......
T Consensus       109 --iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  109 --IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             --EEEeccCcceEEEEecccccccccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence              89999999999999997644321  112234555653 56678888888887 7899999999999999986321110


Q ss_pred             cCCCCCCccC-ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-----------------eeEEEEe-cC--
Q 019405          200 AKPPPKNSLG-IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----------------PVMSFDF-RE--  258 (341)
Q Consensus       200 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~-~~--  258 (341)
                      -......... ...--...|+... +.+..+|++|+.|-..++||.+....                 .++.+.. |-  
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltis-p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTIS-PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeec-CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence            0000000000 0001235677774 23567899999999999999543110                 1222211 11  


Q ss_pred             ---------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405          259 ---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (341)
Q Consensus       259 ---------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  295 (341)
                               ..++-+.|+|+|..|++.-....|+++|+..++....
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence                     1256688999998888877777899999987765443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=6e-13  Score=103.53  Aligned_cols=226  Identities=13%  Similarity=0.088  Sum_probs=149.3

Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v  154 (341)
                      ++|.|||=...+++.++...         .+|..+.+-..          .+++ -..+.+.+|.....+       +.+
T Consensus        75 NkviIWDD~k~~~i~el~f~---------~~I~~V~l~r~----------riVv-vl~~~I~VytF~~n~-------k~l  127 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN---------SEIKAVKLRRD----------RIVV-VLENKIYVYTFPDNP-------KLL  127 (346)
T ss_pred             ceEEEEecccCcEEEEEEec---------cceeeEEEcCC----------eEEE-EecCeEEEEEcCCCh-------hhe
Confidence            57999996666677666653         45555554221          3333 346788888765333       255


Q ss_pred             EEEEeec-CCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          155 KSWNVCA-SGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       155 ~~~~~~~-~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      +.++... +..+.++.-..+..+||. |-.-|.|.|-|+...+.-  ..+..         |...|.|++.  +-+|.++
T Consensus       128 ~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A---------H~s~Iacv~L--n~~Gt~v  196 (346)
T KOG2111|consen  128 HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA---------HDSDIACVAL--NLQGTLV  196 (346)
T ss_pred             eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc---------ccCceeEEEE--cCCccEE
Confidence            5655543 344555544445555554 455689999998754431  22333         4577999999  8899999


Q ss_pred             EEEeCCCe-EEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---E------------
Q 019405          231 VAGTNDHQ-VRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---L------------  292 (341)
Q Consensus       231 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~------------  292 (341)
                      |+++..|+ |||||..++.. +..++..  ...|.+++|||+..+|++++..|++.||.++...   .            
T Consensus       197 ATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l  275 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDGTL-LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL  275 (346)
T ss_pred             EEeccCcEEEEEEEcCCCcE-eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence            99999997 79999999875 7777643  3579999999999999999999999999886422   1            


Q ss_pred             ---------EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE--Ec-CCCceeeeec
Q 019405          293 ---------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW--DI-KTRQLLSAVC  340 (341)
Q Consensus       293 ---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw--d~-~~~~~~~~~~  340 (341)
                               +..+.-. .++..-++|-.+.+.++..+.||.-+-+  +. +.|++.+..|
T Consensus       276 pky~~S~wS~~~f~l~-~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~  334 (346)
T KOG2111|consen  276 PKYFSSEWSFAKFQLP-QGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEY  334 (346)
T ss_pred             chhcccceeEEEEEcc-CCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhh
Confidence                     1112222 4455667777775667777788866433  33 3455554443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=1.3e-13  Score=107.32  Aligned_cols=230  Identities=10%  Similarity=0.028  Sum_probs=155.0

Q ss_pred             CCceeeeecCCCCe----------EEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405           13 PPLRALTFDSLGLI----------KVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (341)
Q Consensus        13 ~~~~~~~~~~~g~i----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~   82 (341)
                      .++.+-+.++|++.          .+++....  +.|+..+++.+|+..++.+.+++...    .|++++.|..-+||..
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~--~~w~~~htls~Hd~~vtgvdWap~sn----rIvtcs~drnayVw~~   84 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--DLWEPAHTLSEHDKIVTGVDWAPKSN----RIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCC--CCceeceehhhhCcceeEEeecCCCC----ceeEccCCCCcccccc
Confidence            34555566666555          34443333  55888899999999999888776554    7999999999999998


Q ss_pred             -CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec
Q 019405           83 -LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (341)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~  161 (341)
                       +.++...++...      .......++.|.+..+        .+++++....+.||.++..++=-     .-+......
T Consensus        85 ~~~~~WkptlvLl------RiNrAAt~V~WsP~en--------kFAVgSgar~isVcy~E~ENdWW-----VsKhikkPi  145 (361)
T KOG1523|consen   85 PSGGTWKPTLVLL------RINRAATCVKWSPKEN--------KFAVGSGARLISVCYYEQENDWW-----VSKHIKKPI  145 (361)
T ss_pred             CCCCeeccceeEE------EeccceeeEeecCcCc--------eEEeccCccEEEEEEEeccccee-----hhhhhCCcc
Confidence             555544443321      1346778888888777        89999999999999887544200     000001122


Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCC--CCc-----cCc-cCCeeeeEEEEEecCCCCEEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPP--KNS-----LGI-FTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~--~~~-----~~~-~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      ...|.+++|+|++-++++|+.|+..++|..--.... +....+-  +.+     .+. ...+++..+.|  +|+|+.|+-
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f--s~sG~~law  223 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF--SPSGNRLAW  223 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe--CCCCCEeeE
Confidence            456899999999999999999999999875211000 0000000  000     011 34589999999  999999999


Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405          233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD  269 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (341)
                      .+.|.++.+-|.....+.+.......-+..++.|-.+
T Consensus       224 v~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  224 VGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE  260 (361)
T ss_pred             ecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence            9999999999987754334444444467777777544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.6e-14  Score=116.92  Aligned_cols=247  Identities=15%  Similarity=0.174  Sum_probs=160.0

Q ss_pred             CCCCceeEEEeccCCCCCce-EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           48 PHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      +....+.+..++|+.    | +|+|..--.|++||+.+-.  ..+..|.       +..++.+..+..+-.       ..
T Consensus        50 ~p~ast~ik~s~DGq----Y~lAtG~YKP~ikvydlanLS--LKFERhl-------Dae~V~feiLsDD~S-------K~  109 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQ----YLLATGTYKPQIKVYDLANLS--LKFERHL-------DAEVVDFEILSDDYS-------KS  109 (703)
T ss_pred             CccccceeEecCCCc----EEEEecccCCceEEEEcccce--eeeeecc-------cccceeEEEeccchh-------hh
Confidence            445555566666665    6 6778889999999996532  3344432       133333333333221       22


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      +.-..|..|.+-.          ..|  +-+.+.-+..-..++++.-..-|+.++....|+-++++.|+.+..+....  
T Consensus       110 v~L~~DR~IefHa----------k~G--~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--  175 (703)
T KOG2321|consen  110 VFLQNDRTIEFHA----------KYG--RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--  175 (703)
T ss_pred             eEeecCceeeehh----------hcC--eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--
Confidence            2222233332221          011  11111112233445554323334444555579999999999988777654  


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------cC-----CCeEEEEEcCCCceEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RE-----TPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~-----~~v~~~~~~~~~~~l~~  275 (341)
                             ..++++..  ++.+.+|++|+.+|.|..||.+.... +..+..      |.     ..|+++.|+.+|-.+++
T Consensus       176 -------~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV  245 (703)
T KOG2321|consen  176 -------GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV  245 (703)
T ss_pred             -------ccceeeee--cCccceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEe
Confidence                   45888888  78888999999999999999998543 444432      22     24999999999999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC--CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |..+|.+.|||+++.+++..-.....-+|..+.|.+.+  +.+++. ....++|||-.+|+....+
T Consensus       246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASI  310 (703)
T ss_pred             eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeec
Confidence            99999999999999888754432236689999998863  455554 4458899999999887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=8.9e-14  Score=120.80  Aligned_cols=220  Identities=9%  Similarity=0.002  Sum_probs=139.5

Q ss_pred             CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeeecccccccC
Q 019405           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS  150 (341)
Q Consensus        74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~~~~~~~~~  150 (341)
                      +..|.+||.+... ...+..        +...+....|.+...        .++..+.+   ..+.+|++....      
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~--------~~~~v~~p~wSPDG~--------~la~~s~~~~~~~i~i~dl~tg~------  239 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNR--------SSQPLMSPAWSPDGS--------KLAYVSFENKKSQLVVHDLRSGA------  239 (429)
T ss_pred             eEEEEEECCCCCC-ceEecc--------CCCccccceEcCCCC--------EEEEEEecCCCcEEEEEeCCCCc------
Confidence            4689999986433 333333        234556666666554        56655433   468888875332      


Q ss_pred             CceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEE--EECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNV--WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       151 ~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (341)
                         .+... ...+....++|+|||+.|+.++ .+|.+.|  ||+.+++. ..+..+.         ..+....|  +|++
T Consensus       240 ---~~~l~-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~---------~~~~~~~w--SpDG  303 (429)
T PRK01742        240 ---RKVVA-SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGA---------GNNTEPSW--SPDG  303 (429)
T ss_pred             ---eEEEe-cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCC---------CCcCCEEE--CCCC
Confidence               11111 1122344689999999888764 5776555  56655543 3333221         23667889  8999


Q ss_pred             CEEEEEe-CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          228 RKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       228 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      +.|+..+ .++...||++.........+ .+..  ....|+|+|++|+..+.+ .+.+||+.+++........   ....
T Consensus       304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~---~~~~  376 (429)
T PRK01742        304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF---LDES  376 (429)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC---CCCC
Confidence            9877655 57888888875432223333 3333  457899999999887775 4666999988764322222   2356


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEc--CCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDI--KTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~  339 (341)
                      +.|+|+|++|+.++.++.+.+|++  .+|+.+.++
T Consensus       377 ~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        377 PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            889999999999999998888875  356666655

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=6.5e-15  Score=121.84  Aligned_cols=161  Identities=20%  Similarity=0.255  Sum_probs=123.3

Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---
Q 019405          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---  247 (341)
Q Consensus       171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  247 (341)
                      .+.+--++.|-.-|.|.+.|....+..+.+....     ......++|+.|.| .+...++.+-.+|.+++||....   
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-----~i~ktsvT~ikWvp-g~~~~Fl~a~~sGnlyly~~~~~~~~  255 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-----LINKSSVTCIKWVP-GSDSLFLVAHASGNLYLYDKEIVCGA  255 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcc-----cccccceEEEEEEe-CCCceEEEEEecCceEEeeccccccC
Confidence            3456667888888999998876632222122111     01226699999974 45567777788999999975320   


Q ss_pred             ------------------------CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          248 ------------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       248 ------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                                              ..|+..+...+..|...+|+|||++||+.+.||.++|||..+.+++..++.. -+.
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGG  334 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGG  334 (636)
T ss_pred             CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccc
Confidence                                    0133334444568899999999999999999999999999998888888877 788


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ..|++|+|||++|++|++|--|.||.+..++.+.+
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            99999999999999999999999999999888764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=2.2e-14  Score=112.53  Aligned_cols=271  Identities=12%  Similarity=0.095  Sum_probs=175.2

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCC----CCCCCCceeeEeeeeccccccc
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      .-+.++.|...+.    +||+|+.+|.|.++.-+...     ....++.|.+.-    .-..+..+..+.|++..+.   
T Consensus        26 diis~vef~~~Ge----~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~---   98 (433)
T KOG1354|consen   26 DIISAVEFDHYGE----RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL---   98 (433)
T ss_pred             cceeeEEeecccc----eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc---
Confidence            3445566665555    99999999999999765322     222333332211    0112456677788877653   


Q ss_pred             cccceeEEEcccceeEEEEeeeccccc---------------------------ccCCceEEEEEeecCCceEEEEecCC
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSA---------------------------ESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                         ..++..+.|.++++|.+.......                           .....+.+++...|.-.|.++.++.|
T Consensus        99 ---a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   99 ---AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             ---cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence               278888899999999986543210                           00112334455555567899999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---  250 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---  250 (341)
                      .+.++++ .|-.|.+|+++--.....+..-++..+.. -..-|++..|+| ...+.++-.+..|+|++-|++....+   
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEe-LteVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEE-LTEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHH-HHHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcch
Confidence            9988874 56689999997543333322221111100 013378888953 24467777788999999999953211   


Q ss_pred             eEEEE------------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC-CCCeEEeEEeccc-----------cCce--
Q 019405          251 VMSFD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGKLLGCFIGKC-----------SGSI--  304 (341)
Q Consensus       251 ~~~~~------------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~~~-----------~~~i--  304 (341)
                      .+.+.            .--..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.           .+.|  
T Consensus       253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd  331 (433)
T KOG1354|consen  253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD  331 (433)
T ss_pred             hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence            01111            11246888999999999988654 58999999 4567777776651           2223  


Q ss_pred             -eEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          305 -RSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       305 -~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                       ..++|+.++.+++||+....+++|++..|.
T Consensus       332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence             457899999999999999999999976654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=7e-14  Score=121.45  Aligned_cols=221  Identities=14%  Similarity=0.067  Sum_probs=139.6

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      .+..+...+...+||+++.    .|+..+.+   ..|++||+.+++.... ...        .+......|.+...    
T Consensus       198 ~lt~~~~~v~~p~wSPDG~----~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~--------~g~~~~~~wSPDG~----  260 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGS----KLAYVSFENKKSQLVVHDLRSGARKVV-ASF--------RGHNGAPAFSPDGS----  260 (429)
T ss_pred             EeccCCCccccceEcCCCC----EEEEEEecCCCcEEEEEeCCCCceEEE-ecC--------CCccCceeECCCCC----
Confidence            4555666777777777665    78876543   4699999987754221 111        01122344444333    


Q ss_pred             cccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEEEECCCC-cee
Q 019405          121 SRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKC-EKI  197 (341)
Q Consensus       121 ~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~-~~~  197 (341)
                          .++.+ ..+|...||.++...       +.++... .+...+....|+||++.|+..+ .++...+|++... ...
T Consensus       261 ----~La~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        261 ----RLAFASSKDGVLNIYVMGANG-------GTPSQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             ----EEEEEEecCCcEEEEEEECCC-------CCeEeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence                55554 467877777654321       1222222 2334577899999999877655 5677888876432 111


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~  277 (341)
                      ..+ .+.         .  ....|  +|++++|+..+.++ +.+||+.+++.  ..+..+ .....+.|+|+|++|+.++
T Consensus       329 ~~l-~~~---------~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~--~~lt~~-~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        329 SLV-GGR---------G--YSAQI--SADGKTLVMINGDN-VVKQDLTSGST--EVLSST-FLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             EEe-cCC---------C--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCe--EEecCC-CCCCCceECCCCCEEEEEE
Confidence            212 111         1  23567  89999998887765 55699987653  222222 1335678999999999999


Q ss_pred             CCCCEEEEEC--CCCeEEeEEeccccCceeEEEecCC
Q 019405          278 GSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       278 ~dg~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .++...+|++  .+++.+..+..| .+.+..++|+|-
T Consensus       391 ~~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp~  426 (429)
T PRK01742        391 TQGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSPY  426 (429)
T ss_pred             cCCCceEEEEEECCCCceEEccCC-CCCCCCcccCCC
Confidence            9998888875  367888888877 788899999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=1.8e-13  Score=104.86  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=102.7

Q ss_pred             ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe--eCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG--GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                      +...++.++..       +..+....+...++|..++|+|+++.+++.  ..++.|.+||++ ++.+..+..        
T Consensus        37 ~~~~l~~~~~~-------~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--------  100 (194)
T PF08662_consen   37 GEFELFYLNEK-------NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--------  100 (194)
T ss_pred             eeEEEEEEecC-------CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--------
Confidence            44556655332       234555666556679999999999987654  467799999996 666666654        


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------CCC
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGD  281 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~  281 (341)
                         ..+..+.|  +|+|++|++++.   .|.|.+||.++.+. +.... | ..++.++|+|+|++|+++..      |+.
T Consensus       101 ---~~~n~i~w--sP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen  101 ---QPRNTISW--SPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             ---CCceEEEE--CCCCCEEEEEEccCCCcEEEEEECCCCEE-eeccc-c-CcEEEEEEcCCCCEEEEEEeccceecccc
Confidence               23678999  999999999874   46799999997553 54443 3 35789999999999998874      688


Q ss_pred             EEEEECCCCeEEeEEe
Q 019405          282 LASVDIRTGKLLGCFI  297 (341)
Q Consensus       282 i~iwd~~~~~~~~~~~  297 (341)
                      ++||+.. |+++....
T Consensus       173 ~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  173 FKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEec-CeEeEecc
Confidence            9999984 77765543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.5e-15  Score=123.84  Aligned_cols=163  Identities=17%  Similarity=0.343  Sum_probs=131.4

Q ss_pred             ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      .|.++|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+...        |...|.++.|.|..+..++++|..|..|
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence            46789999999999999999999999999999877776665543        4466999999988888999999999999


Q ss_pred             EEEEcCC---------CCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeE----------EeEEecc
Q 019405          240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL----------LGCFIGK  299 (341)
Q Consensus       240 ~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~----------~~~~~~~  299 (341)
                      ++||+..         .+.+...+..|...|..++-.|++ ..+.+++.||+|+-+|++....          +..+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999985         223455667788899999999988 7888999999999999986311          1111111


Q ss_pred             ccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405          300 CSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK  331 (341)
Q Consensus       300 ~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~  331 (341)
                       --...++..+|..+ +|+.|+.|-..++||.+
T Consensus       200 -lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             -hheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence             23567889999765 78999999999999954

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=3.2e-13  Score=120.20  Aligned_cols=189  Identities=16%  Similarity=0.095  Sum_probs=140.7

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++.+..+..+.+|+......+............     ...-+-.+++.-++++|+.-+.|.+|+....+.-.      
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~-----~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~------  169 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY-----SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI------  169 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCCceEEEE-----eEEEEeccCcEEEEEeccccccEEEEeccccCCcc------
Confidence            5566666666666665443322111000000000     11223345677789999999999999986221111      


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                         ....|.+.|.++.+  +.+|.++++.++|+++|+|++.+.+......-+|...+..+.|.|+  .+++++.|.+.++
T Consensus       170 ---~l~GHeG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  170 ---RLKGHEGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             ---eecccCCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence               22335577999999  8999999999999999999999987655466679999999999999  8999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      |+.. ++.+..+.+|....|+.++..++...++|++.|+.+++||+..
T Consensus       243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9764 5566688888788999999999999999999999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=4.5e-14  Score=113.60  Aligned_cols=159  Identities=16%  Similarity=0.091  Sum_probs=120.1

Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      .+++++++|..+++++.||++++|+..+...+.....+.         ..|.++.|  +||+++|++-+.| ..+||+.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---------~eV~DL~F--S~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---------AEVKDLDF--SPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---------Ccccccee--CCCCcEEEEecCC-ceEEEEec
Confidence            688999999999999999999999987776665555544         55999999  9999999999999 89999999


Q ss_pred             CCCceeEEEEe--cCCCeEEEEEcCCC-----ceEEEEeCCCCEEEEECCCCeE-----EeEEeccccCceeEEEecCCC
Q 019405          246 AQRRPVMSFDF--RETPIKAVAEEPDS-----FNIYIGNGSGDLASVDIRTGKL-----LGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       246 ~~~~~~~~~~~--~~~~v~~~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      ++.. +.....  .......+.|+.++     ..++.....+.|+.||+.....     ..+.... ...|.+++.+++|
T Consensus       216 ~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dG  293 (398)
T KOG0771|consen  216 TGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDG  293 (398)
T ss_pred             cCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCC
Confidence            9753 554442  23345677888766     3333334456677776643221     1111121 3589999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeee
Q 019405          314 PIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       314 ~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++++.|+.||.|.|++..+.++++-
T Consensus       294 kf~AlGT~dGsVai~~~~~lq~~~~  318 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKSLQRLQY  318 (398)
T ss_pred             cEEEEeccCCcEEEEEeceeeeeEe
Confidence            9999999999999999998877654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=2.2e-14  Score=124.61  Aligned_cols=232  Identities=10%  Similarity=0.079  Sum_probs=168.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++|+.|-.+|+|..++.     .+.....+|.+.++-++.+....    ++++++.|..|++|.+.++.++..+.+|
T Consensus       203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~n~----~iaaaS~D~vIrvWrl~~~~pvsvLrgh  273 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSNNT----MIAAASNDKVIRVWRLPDGAPVSVLRGH  273 (1113)
T ss_pred             ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchhhh----hhhhcccCceEEEEecCCCchHHHHhcc
Confidence            46889999999999997776     66778899999999999887776    7999999999999999999999999984


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc---------------------------c
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS---------------------------A  147 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~---------------------------~  147 (341)
                              .+.++.+++.+.            .+.+.||+..+|+..+.+..                           +
T Consensus       274 --------tgavtaiafsP~------------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  274 --------TGAVTAIAFSPR------------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             --------ccceeeeccCcc------------ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence                    577888777542            35678999999998744321                           1


Q ss_pred             ccCCceEEEEEeecCCceEEEEecCCC-----------CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeee
Q 019405          148 ESSCSTVKSWNVCASGTIAFSKVDISE-----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (341)
Q Consensus       148 ~~~~~~v~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (341)
                      ++.++.-..|..      .++++....           .+.+++-.+-.+.+|++.+++....+..+.         ..+
T Consensus       334 gs~d~ea~n~e~------~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs---------d~~  398 (1113)
T KOG0644|consen  334 GSRDGEARNHEF------EQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS---------DEV  398 (1113)
T ss_pred             ccCCcccccchh------hHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc---------cce
Confidence            222222222221      122222211           233444455668889998888777766654         557


Q ss_pred             eEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       217 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                      ..+.++ +.+.....+++.||...|||+..+.. ++.+......+...+||++|..++....-|.++|.....++.
T Consensus       399 yvLd~H-pfn~ri~msag~dgst~iwdi~eg~p-ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  399 YVLDVH-PFNPRIAMSAGYDGSTIIWDIWEGIP-IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             eeeeec-CCCcHhhhhccCCCceEeeecccCCc-ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            778885 34556667899999999999998764 444433345677889999999999988889999997765543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=4.5e-13  Score=112.37  Aligned_cols=212  Identities=10%  Similarity=0.109  Sum_probs=154.9

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      ...++|....||.++||+..+++....+....                                ..+..++-..|.+.-.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------------------------~~s~t~~~~~w~L~~~   51 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------------------------SLSGTCTYTKWGLSAD   51 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccch--------------------------------hccCcceeEEEEEEec
Confidence            34589999999999999999888776665421                                1111222333332111


Q ss_pred             ccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       144 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                             +.+.+.-...     .....+.+...++-|...|.|.+|+...++..+.+....       |.+.|.++.+  
T Consensus        52 -------~s~~k~~~~~-----~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~-------h~~~v~~~~~--  110 (541)
T KOG4547|consen   52 -------YSPMKWLSLE-----KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDK-------HYGNVNEILD--  110 (541)
T ss_pred             -------cchHHHHhHH-----HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCC-------CCCcceeeec--
Confidence                   0011100000     001122355678888999999999999999888887544       5577999988  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      +.+-..|.+++.|+.+..|+..... .+..+......+.+++.+||+..+++++  +.|++||+++++.+..|.+| .++
T Consensus       111 ~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s~  186 (541)
T KOG4547|consen  111 AQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GSP  186 (541)
T ss_pred             ccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-Ccc
Confidence            7778899999999999999999855 4778888888899999999999999886  47999999999999999998 999


Q ss_pred             eeEEEecCC-----CCEEE-EEeCCCcEEEEEcCC
Q 019405          304 IRSIARHPT-----LPIIA-SCGLDSYLRFWDIKT  332 (341)
Q Consensus       304 i~~~~~~~~-----~~~l~-s~~~dg~v~iwd~~~  332 (341)
                      |.++.|--+     |.+++ +...+.-+.+|-+..
T Consensus       187 v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  187 VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999876     55554 445666778887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=4e-10  Score=93.09  Aligned_cols=279  Identities=18%  Similarity=0.130  Sum_probs=158.3

Q ss_pred             CCCCCceeeeecCC-----CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cC
Q 019405           10 PGCPPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KN   74 (341)
Q Consensus        10 ~~~~~~~~~~~~~~-----g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~d   74 (341)
                      |..++.+++..+..     |.+.+++....     +++..+.....+.. + +|+|++    .|+++.          .+
T Consensus         8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~-~-~spDg~----~lyva~~~~~R~~~G~~~   76 (352)
T TIGR02658         8 PASDARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNP-V-VASDGS----FFAHASTVYSRIARGKRT   76 (352)
T ss_pred             CCCCCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCce-e-ECCCCC----EEEEEeccccccccCCCC
Confidence            44455666666655     88999998886     66666644444443 3 666665    555544          47


Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-c-cceeEEEEeeecccccccCCc
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~g~~~i~~~~~~~~~~~~~~~  152 (341)
                      ..|.+||..+.+.+.++..-....+. . ..-.....+.++++       .++... . +..+.+.|+.           
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~-~-~~~~~~~~ls~dgk-------~l~V~n~~p~~~V~VvD~~-----------  136 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFL-V-GTYPWMTSLTPDNK-------TLLFYQFSPSPAVGVVDLE-----------  136 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhh-c-cCccceEEECCCCC-------EEEEecCCCCCEEEEEECC-----------
Confidence            89999999999998888752111000 0 01111112222221       333222 1 3445555543           


Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEe--------eCCCeEEEEECCC-Ccee-eecCC--CCCCccCccCCeeeeEEE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFG--------GKGVEVNVWDLDK-CEKI-WTAKP--PPKNSLGIFTPTWFTSAA  220 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~--------~~d~~v~i~d~~~-~~~~-~~~~~--~~~~~~~~~~~~~v~~~~  220 (341)
                              .+..+..+.. |++..++..        +.||......+.+ ++.. .....  .....+ ..++      .
T Consensus       137 --------~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v-~~rP------~  200 (352)
T TIGR02658       137 --------GKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL-INHP------A  200 (352)
T ss_pred             --------CCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccc-ccCC------c
Confidence                    3333333333 444443333        2333333322221 2111 10000  000000 0011      2


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEe-------cCCCeEEEEEcCCCceEEEEe----------CC
Q 019405          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGN----------GS  279 (341)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~----------~d  279 (341)
                      |. ..++.++.+... |+|.+.|+....    .+...+..       ....+.-++++|+++.+++..          ..
T Consensus       201 ~~-~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       201 YS-NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             eE-cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence            31 337777777666 999999975432    11222211       122334499999998888743          22


Q ss_pred             CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|.++|..+++.+..+..  ...+..++++||++ +|++.+ .++.|.++|+.+++.++++
T Consensus       279 ~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            5799999999999998885  45899999999999 777666 6788999999999999886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.3e-11  Score=104.61  Aligned_cols=219  Identities=9%  Similarity=0.040  Sum_probs=133.8

Q ss_pred             eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc---ccceeEEEEeeecccccccCCc
Q 019405           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~i~~~~~~~~~~~~~~~  152 (341)
                      .|.+||.+.... ..+..        +...+....|.+...        .++..+   .+..+.+|++..+.        
T Consensus       180 ~l~~~d~dg~~~-~~lt~--------~~~~~~~p~wSPDG~--------~la~~s~~~g~~~i~i~dl~~G~--------  234 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHR--------SPQPLMSPAWSPDGS--------KLAYVTFESGRSALVIQTLANGA--------  234 (429)
T ss_pred             eEEEEcCCCCCC-EEeec--------CCCceeeeEEcCCCC--------EEEEEEecCCCcEEEEEECCCCC--------
Confidence            688888864433 33322        224455566655544        454432   23456677764321        


Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEe-eCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                       .+... ...+......|+|||+.|+.. ..++  .|++||+.+++........          ..+....|  +|+++.
T Consensus       235 -~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~----------~~~~~~~w--SPDG~~  300 (429)
T PRK03629        235 -VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTW--FPDSQN  300 (429)
T ss_pred             -eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC----------CCcCceEE--CCCCCE
Confidence             11111 112334568999999988864 3344  5999999887654332221          22566788  899998


Q ss_pred             EEEEeCC-C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCc
Q 019405          230 FVAGTND-H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       230 l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      |+..+.+ +  .|.++|+.+++  ...+..+........|+|+|++|+..+.+   ..|++||+.+++.. .+...  ..
T Consensus       301 I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~  375 (429)
T PRK03629        301 LAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FL  375 (429)
T ss_pred             EEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CC
Confidence            8877654 3  45555666543  34444444456678999999998876543   35889999887643 33322  23


Q ss_pred             eeEEEecCCCCEEEEEeCCCc---EEEEEcCCCceeeee
Q 019405          304 IRSIARHPTLPIIASCGLDSY---LRFWDIKTRQLLSAV  339 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~---v~iwd~~~~~~~~~~  339 (341)
                      .....|+|||+.|+.++.++.   +.++++. |+...++
T Consensus       376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l  413 (429)
T PRK03629        376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL  413 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence            456789999999999888764   6777774 4444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=8.5e-12  Score=104.59  Aligned_cols=265  Identities=15%  Similarity=0.135  Sum_probs=171.2

Q ss_pred             CeEEEEEecCccCccceeeeccCCC--CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCC
Q 019405           25 LIKVIEARGEHGGVPKVVERWGDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE  102 (341)
Q Consensus        25 ~i~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  102 (341)
                      .|+++++..-     .+  .|..|-  ..|.....+-|.+    .++.-..|.+|.+-.-........+..         
T Consensus        75 ~ikvydlanL-----SL--KFERhlDae~V~feiLsDD~S----K~v~L~~DR~IefHak~G~hy~~RIP~---------  134 (703)
T KOG2321|consen   75 QIKVYDLANL-----SL--KFERHLDAEVVDFEILSDDYS----KSVFLQNDRTIEFHAKYGRHYRTRIPK---------  134 (703)
T ss_pred             ceEEEEcccc-----ee--eeeecccccceeEEEeccchh----hheEeecCceeeehhhcCeeeeeecCc---------
Confidence            4477777764     23  555543  3344445555555    355566677777654321111111111         


Q ss_pred             CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC
Q 019405          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (341)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~  182 (341)
                      .+.  .+.+....-        -|+.++....+.=++++.+.        .+.-+.. ..+.++++.+++-..+|++|+.
T Consensus       135 ~GR--Dm~y~~~sc--------Dly~~gsg~evYRlNLEqGr--------fL~P~~~-~~~~lN~v~in~~hgLla~Gt~  195 (703)
T KOG2321|consen  135 FGR--DMKYHKPSC--------DLYLVGSGSEVYRLNLEQGR--------FLNPFET-DSGELNVVSINEEHGLLACGTE  195 (703)
T ss_pred             CCc--cccccCCCc--------cEEEeecCcceEEEEccccc--------ccccccc-ccccceeeeecCccceEEeccc
Confidence            011  122222222        44555555556555665443        3333333 3478999999999999999999


Q ss_pred             CCeEEEEECCCCceeeecCCCCC--CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405          183 GVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (341)
Q Consensus       183 d~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (341)
                      +|.|..||.+....+..+.....  ..........|+++.|  +.+|-.+++|+.+|.+.|||++..+..+..-.....+
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEe--cCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence            99999999998766555543322  0011111234999999  7789999999999999999999865433333334568


Q ss_pred             eEEEEEcCCC--ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          261 IKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       261 v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      |..+.|.+.+  ..+++ .....++|||-.+|+....+..  ...++.+++-|++.+++++-.++.+..|=+..-
T Consensus       274 i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             eeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            8999997753  34443 4456799999999999888875  456999999999999999998888877766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=1.6e-10  Score=97.59  Aligned_cols=198  Identities=17%  Similarity=0.176  Sum_probs=125.7

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~  147 (341)
                      +++-..++.|.|.|..+.+.+.++...         ........+.+++.       ++.+++.||.+.++|+...+   
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~---------~~~h~~~~~s~Dgr-------~~yv~~rdg~vsviD~~~~~---   69 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTG---------GAPHAGLKFSPDGR-------YLYVANRDGTVSVIDLATGK---   69 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-S---------TTEEEEEE-TT-SS-------EEEEEETTSEEEEEETTSSS---
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCC---------CCceeEEEecCCCC-------EEEEEcCCCeEEEEECCccc---
Confidence            345667899999999999998888762         23333334444332       67777889999999987544   


Q ss_pred             ccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       148 ~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                           .+....  .+.....+++++||++++++. .++.+.++|.++.+.+..+.......-.  ....+..+..  ++.
T Consensus        70 -----~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~--s~~  138 (369)
T PF02239_consen   70 -----VVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVA--SPG  138 (369)
T ss_dssp             -----EEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE---SS
T ss_pred             -----EEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEe--cCC
Confidence                 444433  356778999999999988764 6899999999999998877654211100  1244666666  666


Q ss_pred             CCEEEEEeC-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeE
Q 019405          227 HRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGC  295 (341)
Q Consensus       227 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~  295 (341)
                      ...++..-. .+.|.+.|....+.+...............|+|++++++++ ..++.|-++|.++++.+..
T Consensus       139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            665555444 58888888877544333333344567789999999987664 4567888898887765543

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=1.6e-12  Score=104.10  Aligned_cols=211  Identities=12%  Similarity=0.082  Sum_probs=154.0

Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      |.+-|..+.+...+.        .|++|+.|..+.+|.++..-...  ..++|.+....|...|.|++|+-....+++|+
T Consensus        55 H~GCiNAlqFS~N~~--------~L~SGGDD~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   55 HTGCINALQFSHNDR--------FLASGGDDMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hccccceeeeccCCe--------EEeecCCcceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            446677777766655        89999999999999986532211  23467777777778999999999999999999


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCC
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RET  259 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~  259 (341)
                      .+++|...|+++.+.+..+.....       .+.|+.+..  +|..+.|++.+.++.|.+||.+....+...+..  ...
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~-------~~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~  195 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNN-------RGDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK  195 (609)
T ss_pred             CcceeEeeecccceeeeeecccCc-------ccceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence            999999999999888877654331       246888888  778899999999999999999975533333322  234


Q ss_pred             CeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeE-EeE------EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          260 PIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGC------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       260 ~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~-~~~------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ....+.|+|.. .+|++.+..+-+.+||.+..+. +..      ++.. ...-.++.|+|+|..|++--....-.+||+.
T Consensus       196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            56788999966 6778888889999999985432 211      1111 1223567899999888776554445566665


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      +
T Consensus       275 S  275 (609)
T KOG4227|consen  275 S  275 (609)
T ss_pred             c
Confidence            5

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=4.4e-12  Score=100.51  Aligned_cols=181  Identities=9%  Similarity=0.068  Sum_probs=124.2

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCC----Cceeee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK----CEKIWT  199 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~----~~~~~~  199 (341)
                      .++++..|-.+++|+-..         .............|.|++|-|.+ ..|++|... -|.+|....    +..+..
T Consensus       112 ~fava~nddvVriy~kss---------t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~  181 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS---------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRM  181 (445)
T ss_pred             hhhhhccCcEEEEeccCC---------CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccc
Confidence            678888888888887532         12233333345689999999954 567777766 499998753    122222


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      ...+....+.-....+|+++.|  .+|+..+++++. |..|.|||..++.. +......-+.++-+.||||+.+|+++.-
T Consensus       182 ~s~~~~qvl~~pgh~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  182 MSTHHLQVLQDPGHNPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             ccccchhheeCCCCceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCCEEEEecc
Confidence            2222222222223377999999  889999998774 67899999998764 2222234457888999999999999999


Q ss_pred             CCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          279 SGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       279 dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      |+..++|... +.....-.-+  .+.|...+|+|+|++|+.++
T Consensus       259 davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  259 DAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             cceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEE
Confidence            9999999544 3333333333  56899999999999765543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.49  E-value=2e-11  Score=96.27  Aligned_cols=293  Identities=12%  Similarity=0.101  Sum_probs=168.4

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCC------------CCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH------------SSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~   81 (341)
                      .-++.+|+.+|.+-++.-.....|.......++.|+            ..+.-+.+......  ..++..+.|.+|++|.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--a~FLlstNdktiKlWK  114 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--AEFLLSTNDKTIKLWK  114 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc--cEEEEecCCcceeeee
Confidence            356888999998877765554333333333443333            33555666665553  3677778899999998


Q ss_pred             CCCCcchhe-eec--cCCC---------CC----------------CCCCCceeeEeeeeccccccccccceeEEEcccc
Q 019405           82 PLNGDLRVA-ISN--AGDS---------GA----------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (341)
Q Consensus        82 ~~~~~~~~~-~~~--~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  133 (341)
                      +........ +..  ..+.         ..                -.|.-.+.++...+..         ..+....|=
T Consensus       115 i~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~---------Et~lSADdL  185 (433)
T KOG1354|consen  115 IRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK---------ETFLSADDL  185 (433)
T ss_pred             eeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc---------ceEeeccce
Confidence            865432220 000  0000         00                0011112222221111         222223344


Q ss_pred             eeEEEEeeecccccccCCceEEEEEeecC------CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCcee------eec
Q 019405          134 KASMRSIEVTKVSAESSCSTVKSWNVCAS------GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKI------WTA  200 (341)
Q Consensus       134 ~~~i~~~~~~~~~~~~~~~~v~~~~~~~~------~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~------~~~  200 (341)
                      .|.+|+++..       ++...+.++...      ..|++..|+|. .+.++..+..|+|++-|++.....      ...
T Consensus       186 RINLWnlei~-------d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  186 RINLWNLEII-------DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             eeeecccccc-------CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            5555555432       223333333221      24677888885 467888888999999999853221      111


Q ss_pred             C-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC------------Ce---EEE
Q 019405          201 K-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAV  264 (341)
Q Consensus       201 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~v---~~~  264 (341)
                      + .+....+-......|..+.|  +.+|+++++-.. -+|++||+....+|+.+++-|..            .|   ..+
T Consensus       259 pedp~~rsffseiIsSISDvKF--s~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKF--SHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEE--ccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence            1 11111111111245888999  889999998643 58999999776778888877642            22   357


Q ss_pred             EEcCCCceEEEEeCCCCEEEEECCCCeEE-eE-------------------Ee-cc------------ccCceeEEEecC
Q 019405          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLL-GC-------------------FI-GK------------CSGSIRSIARHP  311 (341)
Q Consensus       265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~-------------------~~-~~------------~~~~i~~~~~~~  311 (341)
                      +|+.++.++++|+..+..++|+...|... .+                   .. +.            ....|...+|+|
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp  415 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHP  415 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCC
Confidence            89999999999999999999996543110 00                   00 00            022467788999


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 019405          312 TLPIIASCGLDSYLRFW  328 (341)
Q Consensus       312 ~~~~l~s~~~dg~v~iw  328 (341)
                      ..+.+|.+..+ .++||
T Consensus       416 ~en~ia~aatn-nlyif  431 (433)
T KOG1354|consen  416 KENSIAVAATN-NLYIF  431 (433)
T ss_pred             ccceeeeeecC-ceEEe
Confidence            99988888655 45555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=6.1e-09  Score=88.05  Aligned_cols=281  Identities=17%  Similarity=0.128  Sum_probs=165.1

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc----CCeEEEeeCCCC-cchheeeccCCCC
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG-DLRVAISNAGDSG   98 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~----dg~i~iw~~~~~-~~~~~~~~~~~~~   98 (341)
                      +.|.++++... +|..+.+.... .......++++++..    +|.+...    ++.|..|.+... ..+..+....   
T Consensus        13 ~gI~~~~~d~~-~g~l~~~~~~~-~~~~Ps~l~~~~~~~----~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---   83 (345)
T PF10282_consen   13 GGIYVFRFDEE-TGTLTLVQTVA-EGENPSWLAVSPDGR----RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---   83 (345)
T ss_dssp             TEEEEEEEETT-TTEEEEEEEEE-ESSSECCEEE-TTSS----EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---
T ss_pred             CcEEEEEEcCC-CCCceEeeeec-CCCCCceEEEEeCCC----EEEEEEccccCCCCEEEEEECCCcceeEEeeeec---
Confidence            67888888555 46555544432 333445566666555    7777655    578999988754 2222222210   


Q ss_pred             CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe---------ecCCceEEEE
Q 019405           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---------CASGTIAFSK  169 (341)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~---------~~~~~i~~~~  169 (341)
                        ........+...+....       .+++-..+|.+.++++.......    .....+..         .......++.
T Consensus        84 --~~g~~p~~i~~~~~g~~-------l~vany~~g~v~v~~l~~~g~l~----~~~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   84 --SGGSSPCHIAVDPDGRF-------LYVANYGGGSVSVFPLDDDGSLG----EVVQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             --ESSSCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSEEE----EEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             --cCCCCcEEEEEecCCCE-------EEEEEccCCeEEEEEccCCcccc----eeeeecccCCCCCcccccccccceeEE
Confidence              01133333444333331       44444578999999987532110    01112211         1234578999


Q ss_pred             ecCCCCEEEEeeC-CCeEEEEECCCCc--ee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEE
Q 019405          170 VDISEKFSLFGGK-GVEVNVWDLDKCE--KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYD  243 (341)
Q Consensus       170 ~~~~~~~l~~~~~-d~~v~i~d~~~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd  243 (341)
                      ++|+++++++... ...|.+|++....  ..  ..+..+.        ......++|  +|+++++.+. ..++.|.+++
T Consensus       151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--------G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--------GSGPRHLAF--SPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--------TSSEEEEEE---TTSSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--------CCCCcEEEE--cCCcCEEEEecCCCCcEEEEe
Confidence            9999998887543 3479999997654  21  1122111        134678899  8898877655 4578899999


Q ss_pred             cC--CCCc-eeEEEEec------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECC--CCe--EEeEEeccccCceeEEEe
Q 019405          244 TS--AQRR-PVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR--TGK--LLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       244 ~~--~~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~--~~~~~~~~~~~~i~~~~~  309 (341)
                      +.  .+.. .++.....      ......++++|+|++|+++.. ++.|.+|++.  +++  .+..+... ....+.+++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~  299 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAF  299 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEE
Confidence            88  3221 12222211      125678999999999888764 5779999983  343  34444433 445789999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEc--CCCceee
Q 019405          310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLS  337 (341)
Q Consensus       310 ~~~~~~l~s~~-~dg~v~iwd~--~~~~~~~  337 (341)
                      +|+|++|+.+. .++.|.+|++  ++|++..
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            99999988877 5568999876  5666443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.6e-10  Score=100.93  Aligned_cols=217  Identities=10%  Similarity=0.043  Sum_probs=136.2

Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---cceeEEEEeeecccccccCC
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSC  151 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~i~~~~~~~~~~~~~~  151 (341)
                      ..|.++|.+ +.....+..        +...+....|.+...        .|+..+.   +..+.+|++....       
T Consensus       182 ~~l~~~d~d-g~~~~~lt~--------~~~~v~~p~wSpDG~--------~lay~s~~~g~~~i~~~dl~~g~-------  237 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTD--------GSSLVLTPRFSPNRQ--------EITYMSYANGRPRVYLLDLETGQ-------  237 (435)
T ss_pred             eEEEEECCC-CCCcEEEec--------CCCCeEeeEECCCCC--------EEEEEEecCCCCEEEEEECCCCc-------
Confidence            378888885 443344443        234566666655544        5555432   3578888875332       


Q ss_pred             ceEEEEEeecCCceEEEEecCCCCEEE-EeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          152 STVKSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                        .+... ...+.+...+|+|||+.|+ +.+.++  .|++||+.+++... +..+.         .......|  +|+++
T Consensus       238 --~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~---------~~~~~~~~--spDG~  302 (435)
T PRK05137        238 --RELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSP---------AIDTSPSY--SPDGS  302 (435)
T ss_pred             --EEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCC---------CccCceeE--cCCCC
Confidence              12211 2344667889999998876 445454  47888988765533 33221         22456788  89999


Q ss_pred             EEEEEeC-C--CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccC
Q 019405          229 KFVAGTN-D--HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       229 ~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      .|+..+. +  ..|+++|+..++  .+.+..+...+....|+|+|+.|+....+   ..|.+||+..+.. ..+..  ..
T Consensus       303 ~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~  377 (435)
T PRK05137        303 QIVFESDRSGSPQLYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GF  377 (435)
T ss_pred             EEEEEECCCCCCeEEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CC
Confidence            8887664 3  368888877644  44454445566778999999999876543   3588889865543 33332  23


Q ss_pred             ceeEEEecCCCCEEEEEeCC------CcEEEEEcCCCce
Q 019405          303 SIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQL  335 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~  335 (341)
                      .+..+.|+|||+.|+..+.+      ..+.++|+..++.
T Consensus       378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            56788999999987765543      2578888875543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=1.1e-12  Score=102.60  Aligned_cols=230  Identities=13%  Similarity=0.053  Sum_probs=148.3

Q ss_pred             EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (341)
Q Consensus        55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  134 (341)
                      ..||++++    ++|+... -.+.|-|.++-+..+.+...         +.|.-+.|-...-.       .+...+.++.
T Consensus        14 c~fSp~g~----yiAs~~~-yrlviRd~~tlq~~qlf~cl---------dki~yieW~ads~~-------ilC~~yk~~~   72 (447)
T KOG4497|consen   14 CSFSPCGN----YIASLSR-YRLVIRDSETLQLHQLFLCL---------DKIVYIEWKADSCH-------ILCVAYKDPK   72 (447)
T ss_pred             eeECCCCC----eeeeeee-eEEEEeccchhhHHHHHHHH---------HHhhheeeecccee-------eeeeeeccce
Confidence            35665555    8998874 48999999988877766653         55555555433332       6778888999


Q ss_pred             eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCC
Q 019405          135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (341)
Q Consensus       135 ~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  213 (341)
                      +.+|++...+-        -...+ .....+..+.|+|||+. |.+..-+-.|.+|.+.+.+.... +.++         
T Consensus        73 vqvwsl~Qpew--------~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK---------  133 (447)
T KOG4497|consen   73 VQVWSLVQPEW--------YCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK---------  133 (447)
T ss_pred             EEEEEeeccee--------EEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc---------
Confidence            99999864321        11111 23457889999999955 45666788999999987655432 2222         


Q ss_pred             eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      ..+..++|  +|+|++.+..+.-...-...+..-  -..+..+....-..+.+.|+|||..|++         ||---.-
T Consensus       134 ~~~kg~~f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley  202 (447)
T KOG4497|consen  134 TNVKGYAF--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY  202 (447)
T ss_pred             cCceeEEE--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh
Confidence            23678899  899998887765322111111110  1123444445556788999999988765         4322111


Q ss_pred             EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      .+..+  +..-.+..++|+|.+++|+.|+.|+.+|+-+--+-+++.
T Consensus       203 kv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~  246 (447)
T KOG4497|consen  203 KVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG  246 (447)
T ss_pred             eeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence            11122  213568889999999999999999999987655544443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4e-11  Score=104.50  Aligned_cols=214  Identities=12%  Similarity=0.058  Sum_probs=131.5

Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---cceeEEEEeeecccccccCC
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---KGKASMRSIEVTKVSAESSC  151 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~i~~~~~~~~~~~~~~  151 (341)
                      ..|.+||.... ....+..        +...+....|.+...        .++..+.   ...+.+|++....       
T Consensus       184 ~~l~i~D~~g~-~~~~lt~--------~~~~v~~p~wSpDg~--------~la~~s~~~~~~~l~~~dl~~g~-------  239 (433)
T PRK04922        184 YALQVADSDGY-NPQTILR--------SAEPILSPAWSPDGK--------KLAYVSFERGRSAIYVQDLATGQ-------  239 (433)
T ss_pred             EEEEEECCCCC-CceEeec--------CCCccccccCCCCCC--------EEEEEecCCCCcEEEEEECCCCC-------
Confidence            46899998543 3333332        223455555555444        5555442   2457777764322       


Q ss_pred             ceEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          152 STVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                       ...+-.  ..+.....+|+|+|+.++. .+.++  .|++||+.+++... +..+.         ......+|  +|+++
T Consensus       240 -~~~l~~--~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~---------~~~~~~~~--spDG~  304 (433)
T PRK04922        240 -RELVAS--FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF---------GIDTEPTW--APDGK  304 (433)
T ss_pred             -EEEecc--CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCC
Confidence             111211  2234457899999987764 44444  59999998876433 33221         12345688  89999


Q ss_pred             EEEEEeC-CCe--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccC
Q 019405          229 KFVAGTN-DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       229 ~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      +|+..+. ++.  |+++|+.+++  ...+..+.......+|+|+|++|+..+.++   .|.+||+.+++.. .+. + ..
T Consensus       305 ~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~-~~  379 (433)
T PRK04922        305 SIYFTSDRGGRPQIYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-P-GS  379 (433)
T ss_pred             EEEEEECCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-C-CC
Confidence            8887664 444  6666776644  333333434455789999999988765443   5999999888765 332 2 22


Q ss_pred             ceeEEEecCCCCEEEEEeCC---CcEEEEEcCC
Q 019405          303 SIRSIARHPTLPIIASCGLD---SYLRFWDIKT  332 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~d---g~v~iwd~~~  332 (341)
                      ......|+|||++|+..+.+   +.|.++++..
T Consensus       380 ~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        380 LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            45577999999987776653   3678888854

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=8.4e-11  Score=98.47  Aligned_cols=133  Identities=17%  Similarity=0.259  Sum_probs=99.5

Q ss_pred             eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE--EeCCCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIK  262 (341)
Q Consensus       185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  262 (341)
                      +++++++........+.          ..++|.++.|  +++++-+++  |-.-..+.|||++. . ++..+  .+++-+
T Consensus       252 ~Lyll~t~g~s~~V~L~----------k~GPVhdv~W--~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~df--~egpRN  315 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL----------KEGPVHDVTW--SPSGREFAVVYGFMPAKVTIFNLRG-K-PVFDF--PEGPRN  315 (566)
T ss_pred             eEEEEEecCceEEEecC----------CCCCceEEEE--CCCCCEEEEEEecccceEEEEcCCC-C-EeEeC--CCCCcc
Confidence            57777766333332232          2377999999  788866655  55677899999885 2 35444  567888


Q ss_pred             EEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe------CCCcEEEEEcCCC
Q 019405          263 AVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTR  333 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~  333 (341)
                      ++-|+|.|++|+.++-   .|.|.+||+.+.+++..+...   .-+-..|+|||++|+|+.      .|+.++||+.. |
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G  391 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-G  391 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-C
Confidence            9999999999887765   488999999999999888764   345578999999999886      46889999985 6


Q ss_pred             ceee
Q 019405          334 QLLS  337 (341)
Q Consensus       334 ~~~~  337 (341)
                      ..++
T Consensus       392 ~~l~  395 (566)
T KOG2315|consen  392 SLLH  395 (566)
T ss_pred             ceee
Confidence            5554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=6.9e-11  Score=102.63  Aligned_cols=218  Identities=12%  Similarity=0.027  Sum_probs=131.4

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEc---cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVAR---KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .+...+...+||+|+.    .|+..+   .+..|.+|++.+++.......         .+......|.+...       
T Consensus       196 ~~~~~~~~p~wSPDG~----~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---------~~~~~~~~~SPDG~-------  255 (429)
T PRK03629        196 RSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGAVRQVASF---------PRHNGAPAFSPDGS-------  255 (429)
T ss_pred             cCCCceeeeEEcCCCC----EEEEEEecCCCcEEEEEECCCCCeEEccCC---------CCCcCCeEECCCCC-------
Confidence            3445566666666655    777643   245799999987754322111         01122334444333       


Q ss_pred             ceeE-EEcccce--eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-C--eEEEEECCCCcee
Q 019405          124 RTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-V--EVNVWDLDKCEKI  197 (341)
Q Consensus       124 ~~l~-~~~~~g~--~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~  197 (341)
                       .++ +...+|.  +.+|+++..         .++... .....+....|+||++.|+..+.+ +  .|+++|+.+++..
T Consensus       256 -~La~~~~~~g~~~I~~~d~~tg---------~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        256 -KLAFALSKTGSLNLYVMDLASG---------QIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             -EEEEEEcCCCCcEEEEEECCCC---------CEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence             444 3344554  666665432         222211 123456788999999988877654 3  4555677665443


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  274 (341)
                       .+....         .......|  +|++++|+..+.+   ..|.+||+.+++  ...+... .......|+|||+.|+
T Consensus       325 -~lt~~~---------~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~~i~  389 (429)
T PRK03629        325 -RITWEG---------SQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGTMVI  389 (429)
T ss_pred             -EeecCC---------CCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCCEEE
Confidence             222211         22445678  8999998876543   358889988765  3344322 2234678999999999


Q ss_pred             EEeCCCC---EEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          275 IGNGSGD---LASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       275 ~g~~dg~---i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .++.++.   ++++++ +|+....+..+ .+.+...+|+|-
T Consensus       390 ~~s~~~~~~~l~~~~~-~G~~~~~l~~~-~~~~~~p~Wsp~  428 (429)
T PRK03629        390 YSSSQGMGSVLNLVST-DGRFKARLPAT-DGQVKFPAWSPY  428 (429)
T ss_pred             EEEcCCCceEEEEEEC-CCCCeEECccC-CCCcCCcccCCC
Confidence            8887764   677777 46666677776 778899999873

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1e-10  Score=101.66  Aligned_cols=223  Identities=14%  Similarity=0.099  Sum_probs=132.1

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      +..+...+...+|++|+.    .|+..+.+   ..|.+||+.+++... +...        .+......|.+....    
T Consensus       191 l~~~~~~v~~p~wSPDG~----~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~--------~g~~~~~~~SPDG~~----  253 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGT----KLAYVSFESKKPVVYVHDLATGRRRV-VANF--------KGSNSAPAWSPDGRT----  253 (427)
T ss_pred             eccCCCCcccceEcCCCC----EEEEEEccCCCcEEEEEECCCCCEEE-eecC--------CCCccceEECCCCCE----
Confidence            334555666666666554    77776532   459999998876532 2211        122333444444331    


Q ss_pred             ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEE--ECCCCceee
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVW--DLDKCEKIW  198 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~--d~~~~~~~~  198 (341)
                         .+++...+|...||.++...       +.++... .+........|+|||+.|+..+. ++...+|  ++.+++...
T Consensus       254 ---la~~~~~~g~~~Iy~~d~~~-------~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        254 ---LAVALSRDGNSQIYTVNADG-------SGLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             ---EEEEEccCCCceEEEEECCC-------CCcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence               34466778888888775321       1122221 12233456789999998886654 3555555  444443222


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                       +....         .......|  +|+|++|+..+.++   .|.+||+.+++  ...+... .......|+|+|+.|+.
T Consensus       323 -lt~~g---------~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~-~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        323 -VTFTG---------SYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQ--VTALTDT-TRDESPSFAPNGRYILY  387 (427)
T ss_pred             -EecCC---------CCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCC--eEEccCC-CCccCceECCCCCEEEE
Confidence             11111         11234578  89999998776554   69999998765  3333322 23467899999998887


Q ss_pred             EeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          276 GNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       276 g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .+.++   .+++.++ +++....+..+ .+.+...+|+|-
T Consensus       388 ~~~~~g~~~l~~~~~-~g~~~~~l~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        388 ATQQGGRSVLAAVSS-DGRIKQRLSVQ-GGDVREPSWGPF  425 (427)
T ss_pred             EEecCCCEEEEEEEC-CCCceEEeecC-CCCCCCCccCCC
Confidence            76543   3666666 46666666655 677888888874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.45  E-value=3.6e-10  Score=97.07  Aligned_cols=277  Identities=13%  Similarity=0.138  Sum_probs=163.6

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ..-+++.++.+|.+..++..+. .-.|+.  .++.  ......+      ..+..+++++.+|.+..+|..+|+.+....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG-~~~W~~--~~~~--~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  132 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETG-KRLWRV--DLDE--RLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKELWRAK  132 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCC-cEeeee--cCCC--CcccceE------EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence            3456788888888888887665 112211  2211  1111111      123468888999999999999998876654


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE--e
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK--V  170 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~--~  170 (341)
                      ..         +.+.+.... .++        .++.+..+|.+..++....+          .+|..........+.  .
T Consensus       133 ~~---------~~~~~~p~v-~~~--------~v~v~~~~g~l~a~d~~tG~----------~~W~~~~~~~~~~~~~~~  184 (377)
T TIGR03300       133 LS---------SEVLSPPLV-ANG--------LVVVRTNDGRLTALDAATGE----------RLWTYSRVTPALTLRGSA  184 (377)
T ss_pred             cC---------ceeecCCEE-ECC--------EEEEECCCCeEEEEEcCCCc----------eeeEEccCCCceeecCCC
Confidence            31         112111111 112        66777788888888875433          345443322211111  0


Q ss_pred             cC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc-cCccCCeee-eEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          171 DI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       171 ~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +|  .+..++.+..++.+..+|.++++.++......... ........+ ....+    .+..+++++.++.++.||..+
T Consensus       185 sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~~g~l~a~d~~t  260 (377)
T TIGR03300       185 SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSYQGRVAALDLRS  260 (377)
T ss_pred             CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEcCCEEEEEECCC
Confidence            01  13467778888999999999998887644221100 000000000 11112    345788888899999999998


Q ss_pred             CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      ++. +-....  ........  .+..+++++.+|.++.+|..+++.+................  .+..|++++.||.|+
T Consensus       261 G~~-~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~  333 (377)
T TIGR03300       261 GRV-LWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH  333 (377)
T ss_pred             CcE-EEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence            764 333321  11122222  45678888899999999999998876653210112222222  466888999999999


Q ss_pred             EEEcCCCceeeee
Q 019405          327 FWDIKTRQLLSAV  339 (341)
Q Consensus       327 iwd~~~~~~~~~~  339 (341)
                      ++|..+|+.+.++
T Consensus       334 ~~d~~tG~~~~~~  346 (377)
T TIGR03300       334 WLSREDGSFVARL  346 (377)
T ss_pred             EEECCCCCEEEEE
Confidence            9999999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.7e-11  Score=105.30  Aligned_cols=161  Identities=16%  Similarity=0.057  Sum_probs=107.1

Q ss_pred             cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND  236 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d  236 (341)
                      +...+.+.+|+||++.|+..+.+   ..|.+||+.+++........          ......+|  +|+++.|+ +.+.+
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~----------g~~~~~~~--SPDG~~la~~~~~~  261 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK----------GSNSAPAW--SPDGRTLAVALSRD  261 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC----------CCccceEE--CCCCCEEEEEEccC
Confidence            45678899999999999876643   35999999888654322111          22456788  89998887 45677


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEE--ECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASV--DIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      +...+|.+.........+..+........|+|||+.|+..+. ++...||  ++.+++... +... ........|+|+|
T Consensus       262 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~-g~~~~~~~~SpDG  339 (427)
T PRK02889        262 GNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT-GSYNTSPRISPDG  339 (427)
T ss_pred             CCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC-CCCcCceEECCCC
Confidence            776666553221124555555555667899999998876554 4555555  444444322 2222 2334568899999


Q ss_pred             CEEEEEeCCC---cEEEEEcCCCce
Q 019405          314 PIIASCGLDS---YLRFWDIKTRQL  335 (341)
Q Consensus       314 ~~l~s~~~dg---~v~iwd~~~~~~  335 (341)
                      ++|+..+.++   .|.+||+.+++.
T Consensus       340 ~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        340 KLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CEEEEEEccCCcEEEEEEECCCCCe
Confidence            9998777654   699999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.45  E-value=5.6e-13  Score=124.71  Aligned_cols=180  Identities=14%  Similarity=0.187  Sum_probs=144.9

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      ..++++.||.+++|....        ...|..|+......++.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.
T Consensus      2222 ~Yltgs~dgsv~~~~w~~--------~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn 2292 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGH--------GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN 2292 (2439)
T ss_pred             eEEecCCCceEEEEeccC--------CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC
Confidence            899999999999998753        348889998777889999999999999999999999999986 44455555543


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                               .......|.    +..+++++   .++.+.+||....  ...+.  +.|.+.++++++-|..++|++|+.+
T Consensus      2293 ---------k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2293 ---------KALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             ---------ccccceeee----ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence                     335666773    25666654   5789999996542  22233  7799999999999999999999999


Q ss_pred             CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |.|++||++..++++.++.          ++ ...++++++..|.++||++..-..+.++
T Consensus      2358 G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            9999999999888877753          44 5678999999999999999887766654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=9.2e-11  Score=90.62  Aligned_cols=256  Identities=14%  Similarity=0.163  Sum_probs=157.5

Q ss_pred             CCceeEEEeccCCCCCc-eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           50 SSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      ..+..+.++..... |. .|+-+..+|.|.++..........++.......+.  ....++.+-....        .+++
T Consensus        70 s~~~dm~w~~~~~~-g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--~~~lslD~~~~~~--------~i~v  138 (339)
T KOG0280|consen   70 STEFDMLWRIRETD-GDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV--VEALSLDISTSGT--------KIFV  138 (339)
T ss_pred             cccceeeeeeccCC-ccceeeeccccceEEEEeeccceeeeeecccchhhhhh--eeeeEEEeeccCc--------eEEE
Confidence            33444455543332 22 47778889999999876544444444322111110  1233444444444        6888


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCC
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKN  206 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~  206 (341)
                      ...+|.+.+-+.....      -..+..|.. |.-+++...|+. +.+++++|+.|+.+..||++. ++.++.  +... 
T Consensus       139 s~s~G~~~~v~~t~~~------le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~--n~kv-  208 (339)
T KOG0280|consen  139 SDSRGSISGVYETEMV------LEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH--NSKV-  208 (339)
T ss_pred             EcCCCcEEEEecceee------eeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee--ccee-
Confidence            8888888744432211      113345654 455677777764 457899999999999999983 333332  1111 


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASV  285 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iw  285 (341)
                           |...|.++.-. +|.+.++++|+.|..|++||.++..+|+..-. -.+.|+.+.++|.-. .+++++.-+-.+|.
T Consensus       209 -----H~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~  281 (339)
T KOG0280|consen  209 -----HTSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKIL  281 (339)
T ss_pred             -----eecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence                 33457777664 56788999999999999999998777766544 337899999999542 33344444456777


Q ss_pred             ECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEE-EEEcCCCc
Q 019405          286 DIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLR-FWDIKTRQ  334 (341)
Q Consensus       286 d~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~-iwd~~~~~  334 (341)
                      +...+.     .....+.| .+-.+.-.|.....+|+|++ .|..++ +|-..++.
T Consensus       282 ~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  282 DSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             Eecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            766542     23444555 66677777765556788876 577755 88666654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.43  E-value=2.5e-10  Score=89.68  Aligned_cols=272  Identities=12%  Similarity=0.103  Sum_probs=163.6

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +.....++.|.+|++...     +-.-+..+.+.+...+.+|+|+..   +|.+...|-+|.||.+.+.+....-..   
T Consensus        64 lC~~yk~~~vqvwsl~Qp-----ew~ckIdeg~agls~~~WSPdgrh---iL~tseF~lriTVWSL~t~~~~~~~~p---  132 (447)
T KOG4497|consen   64 LCVAYKDPKVQVWSLVQP-----EWYCKIDEGQAGLSSISWSPDGRH---ILLTSEFDLRITVWSLNTQKGYLLPHP---  132 (447)
T ss_pred             eeeeeccceEEEEEeecc-----eeEEEeccCCCcceeeeECCCcce---EeeeecceeEEEEEEeccceeEEeccc---
Confidence            344568889999999875     333367777888888899888852   577788899999999977543211000   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEccc----------------------ceeEEEEeeecccccccCCceE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----------------------GKASMRSIEVTKVSAESSCSTV  154 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------g~~~i~~~~~~~~~~~~~~~~v  154 (341)
                            ...+.... +.++..       ..+.++.-                      .++-+-.++..+     ++.-+
T Consensus       133 ------K~~~kg~~-f~~dg~-------f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-----dg~~l  193 (447)
T KOG4497|consen  133 ------KTNVKGYA-FHPDGQ-------FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-----DGNWL  193 (447)
T ss_pred             ------ccCceeEE-ECCCCc-------eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-----CCcEE
Confidence                  00011111 111110       11111000                      001111111111     12233


Q ss_pred             EEEEe---------ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--------------------------
Q 019405          155 KSWNV---------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--------------------------  199 (341)
Q Consensus       155 ~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--------------------------  199 (341)
                      .+|+.         +-+-.+..++|+|.+++|++|+.|+.+++.+--+-+...+                          
T Consensus       194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~  273 (447)
T KOG4497|consen  194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL  273 (447)
T ss_pred             EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence            33332         1234688899999999999999999988765432111000                          


Q ss_pred             -----cCCCC--------C----------------C-ccCccC-CeeeeEEEEEecCCCCEEEEEeCC--CeEEEEEcCC
Q 019405          200 -----AKPPP--------K----------------N-SLGIFT-PTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTSA  246 (341)
Q Consensus       200 -----~~~~~--------~----------------~-~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~~  246 (341)
                           +....        .                . ..+..+ ...+.-++|  ++|..++++-...  +.+-+||++.
T Consensus       274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf--s~Ds~y~aTrnd~~PnalW~Wdlq~  351 (447)
T KOG4497|consen  274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF--SCDSTYAATRNDKYPNALWLWDLQN  351 (447)
T ss_pred             ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee--cCCceEEeeecCCCCceEEEEechh
Confidence                 00000        0                0 000000 123567788  8888888876432  5689999997


Q ss_pred             CCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      .+  +...-....+|....|+|....|+.+.....+++|...-...+. .+.. .-.|..+.|+-+|..++..+.|..
T Consensus       352 l~--l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~-GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  352 LK--LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKK-GFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             hh--hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCC-CceeeeEEecCCCcEEEEEcCCce
Confidence            44  44444456799999999999888888888889999886544443 3333 468999999999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=1.1e-10  Score=92.03  Aligned_cols=226  Identities=12%  Similarity=0.154  Sum_probs=145.1

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----Ccchheee
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAIS   92 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~   92 (341)
                      +++.+.|-.+|+|--.+. ...|.-+..  .-..++.++.+.....    .|++|-.+|++.-+.+..    ....+.+.
T Consensus        39 v~~~s~drtvrv~lkrds-~q~wpsI~~--~mP~~~~~~~y~~e~~----~L~vg~~ngtvtefs~sedfnkm~~~r~~~  111 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDS-GQYWPSIYH--YMPSPCSAMEYVSESR----RLYVGQDNGTVTEFALSEDFNKMTFLKDYL  111 (404)
T ss_pred             eEEccccceeeeEEeccc-cccCchhhh--hCCCCceEeeeeccce----EEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence            678889999999987765 232322211  1345566666665555    799999999999887642    12223333


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      .        |...+..+.+.....        .+++.+.|..+.--..+++.        .+--+......  ..+.+.-
T Consensus       112 ~--------h~~~v~~~if~~~~e--------~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~~~--t~~~~d~  165 (404)
T KOG1409|consen  112 A--------HQARVSAIVFSLTHE--------WVLSTGKDKQFAWHCTESGN--------RLGGYNFETPA--SALQFDA  165 (404)
T ss_pred             h--------hhcceeeEEecCCce--------eEEEeccccceEEEeeccCC--------cccceEeeccC--CCCceee
Confidence            3        334555555444444        67777776655433333222        11112211110  1111111


Q ss_pred             CCCEEEEeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          173 SEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                        .+...|-..|.|..-.+.  ....+..+..+.         +.+.+++|  .+...+|.+|..|..+.+||+-..+..
T Consensus       166 --~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  166 --LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             --EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEE--cCCCcEEEeccccCceEEEeccCCcce
Confidence              144455556666555443  344556666654         66999999  888899999999999999999876655


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      ...+.+|...|..+..-+.-+.+++++.||.|.+|+..
T Consensus       233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            67788899999999888888899999999999999875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.42  E-value=1.3e-10  Score=88.74  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=152.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +||.|+..|...+|...+.+....+-..       +...+.-.......       ...+..++.|+++++..++.....
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~-------~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDL-------KFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhccc-------ccceeeccCCcceeEEEEecCccc
Confidence            6999999999999999865543222210       11111111111111       116788889999999988754422


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                      .     .+..  .  .-.+.++.+++|++++++.+....|..|.+.. ++.+........       ...-.+..|  +.
T Consensus       152 ~-----~~h~--~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-------~D~gF~~S~--s~  213 (344)
T KOG4532|consen  152 F-----AVHN--Q--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-------SDHGFYNSF--SE  213 (344)
T ss_pred             c-----eeec--c--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-------CCCceeeee--cc
Confidence            1     1111  1  02377889999999999999999999999875 333332111111       122456677  77


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEE----EecCCCeEEEEEcCCC--ceEEEEeCCCCEEEEECCCCeEEeEEe--
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSF----DFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFI--  297 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~--  297 (341)
                      ....+|++..||++.|||++....|....    ..|.++++.+.|++.|  .+|+..-.-+.+.+.|+++++....+.  
T Consensus       214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            88899999999999999999865544332    3388999999999866  345554455789999999886544332  


Q ss_pred             -----ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          298 -----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       298 -----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                           .|....|..-.|+.++..+...+++ .+.-|++.+..
T Consensus       294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  294 DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             ccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence                 2323448888888888766666555 45667666543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=4e-12  Score=104.43  Aligned_cols=253  Identities=9%  Similarity=0.024  Sum_probs=177.0

Q ss_pred             CCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (341)
Q Consensus        10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~   89 (341)
                      |.+....+++++.||.+++=.+-..  |..+-..++..|.+++..++.-++...   -|.+++.|+.+.-.|+..+....
T Consensus       195 P~s~d~ti~~~s~dgqvr~s~i~~t--~~~e~t~rl~~h~g~vhklav~p~sp~---~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  195 PFSGDRTIVTSSRDGQVRVSEILET--GYVENTKRLAPHEGPVHKLAVEPDSPK---PFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             CCCCCcCceeccccCceeeeeeccc--cceecceecccccCccceeeecCCCCC---cccccccccceeeeeeccCCccc
Confidence            3444556889999999998887765  433434567789999999997776653   38999999999999998876655


Q ss_pred             eeeccCCCCCCCCCC---ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe-----ec
Q 019405           90 AISNAGDSGAQPEDD---GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CA  161 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~  161 (341)
                      .+....     ....   ....++..+...       ..+++++.|-.+++|+...-....  ..+.+..+-.     ..
T Consensus       270 ~~~cr~-----~~~~~~v~L~~Ia~~P~nt-------~~faVgG~dqf~RvYD~R~~~~e~--~n~~~~~f~p~hl~~d~  335 (559)
T KOG1334|consen  270 KFVCRE-----ADEKERVGLYTIAVDPRNT-------NEFAVGGSDQFARVYDQRRIDKEE--NNGVLDKFCPHHLVEDD  335 (559)
T ss_pred             eeeeec-----cCCccceeeeeEecCCCCc-------cccccCChhhhhhhhcccchhhcc--ccchhhhcCCccccccC
Confidence            554311     1112   222333333332       288999999999999876543321  1111222211     22


Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCC--C----------ceeee-cCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--C----------EKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~----------~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                      ...|++++++.++.-+.+...|-.|+++.-.-  |          ..... +++|.+.       ..|..+-|. .|...
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-------~TVKgVNFf-GPrsE  407 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-------RTVKGVNFF-GPRSE  407 (559)
T ss_pred             cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-------cccceeeec-cCccc
Confidence            34689999998887777788888899995432  2          11222 3444432       348888887 78899


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ++++|+.=|.|.||+-.+++. ++.+.+...-|+|+.=+|.-..||+.+-|..|+||...+.
T Consensus       408 yVvSGSDCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  408 YVVSGSDCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             eEEecCccceEEEEecchhHH-HHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            999999999999999888664 7777776668999999999999999999999999987543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=7.7e-11  Score=102.77  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=110.4

Q ss_pred             cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND  236 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d  236 (341)
                      +...+...+|+||++.|+..+.+   ..|++||+.+++..... ...         .......|  +|+++.|+. .+.+
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~---------g~~~~~~~--SpDG~~l~~~~s~~  269 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR---------GINGAPSF--SPDGRRLALTLSRD  269 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC---------CCccCceE--CCCCCEEEEEEeCC
Confidence            34578899999999999987643   46999999877654322 111         12346688  899987764 4455


Q ss_pred             C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCC--EEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       237 ~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      +  .|++||+.+++  +..+..+.......+|+|+|+.|+..+. +|.  |+++|+.+++... +... ......++|+|
T Consensus       270 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~Sp  345 (433)
T PRK04922        270 GNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSP  345 (433)
T ss_pred             CCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECC
Confidence            5  59999998765  4455555555567899999998887663 444  7777877765432 2222 33455789999


Q ss_pred             CCCEEEEEeCCC---cEEEEEcCCCcee
Q 019405          312 TLPIIASCGLDS---YLRFWDIKTRQLL  336 (341)
Q Consensus       312 ~~~~l~s~~~dg---~v~iwd~~~~~~~  336 (341)
                      +|++|+..+.++   .|.+||+.+++..
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            999888765443   6999999887643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=1.8e-11  Score=109.24  Aligned_cols=188  Identities=11%  Similarity=0.129  Sum_probs=141.2

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .++.++.++.+.+||...+....++...       ......+...+-...     ...++++++.-+.+.+|+....+  
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~-------er~~l~~~~~~g~s~-----~~~~i~~gsv~~~iivW~~~~dn--  166 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSD-------ERCTLYSSLIIGDSA-----EELYIASGSVFGEIIVWKPHEDN--  166 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCC-------ceEEEEeEEEEeccC-----cEEEEEeccccccEEEEeccccC--
Confidence            6888999999999999877766665541       111111122211111     12278888999999999986222  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                           ..+  .-..|.+.|..+.++.||.++++.++|.++++|++++.+...        ....+|+..+..+.|  .|+
T Consensus       167 -----~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------~~~fgHsaRvw~~~~--~~n  229 (967)
T KOG0974|consen  167 -----KPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------CTGFGHSARVWACCF--LPN  229 (967)
T ss_pred             -----Ccc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------cccccccceeEEEEe--ccc
Confidence                 123  345678999999999999999999999999999999877654        223457788999999  454


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                        .+++++.|.+.++|+... .. +..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus       230 --~i~t~gedctcrvW~~~~-~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 --RIITVGEDCTCRVWGVNG-TQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             --eeEEeccceEEEEEeccc-ce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence              999999999999997664 33 55676664 4689999999999999999999999999753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=3e-10  Score=99.18  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=110.4

Q ss_pred             cCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND  236 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d  236 (341)
                      +...+...+|+|||+.|+..+.   +..|++||+.+++... +....         ..+...+|  +|+++.|+ +.+.+
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~---------g~~~~~~~--SPDG~~la~~~~~~  267 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP---------GMTFAPRF--SPDGRKVVMSLSQG  267 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC---------CcccCcEE--CCCCCEEEEEEecC
Confidence            4567899999999999887653   4689999998876532 22211         23566788  89998876 44555


Q ss_pred             Ce--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          237 HQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       237 ~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      +.  |.+||+.+++  ...+..+........|+|+|+.|+..+. +|  .|+++|+..++.. .+..+ ...+....|+|
T Consensus       268 g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Sp  343 (435)
T PRK05137        268 GNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSP  343 (435)
T ss_pred             CCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECC
Confidence            54  7777887754  4556656656677999999998887663 33  5888898766543 33322 45567789999


Q ss_pred             CCCEEEEEeCC---CcEEEEEcCCC
Q 019405          312 TLPIIASCGLD---SYLRFWDIKTR  333 (341)
Q Consensus       312 ~~~~l~s~~~d---g~v~iwd~~~~  333 (341)
                      +|+.|+..+.+   ..|.+||+.++
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCC
Confidence            99998877643   36888887654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5.8e-11  Score=93.64  Aligned_cols=256  Identities=10%  Similarity=0.136  Sum_probs=173.6

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee-CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN-PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      .++.++.++...++....-+-..    -+++.+.|.++|||- .+.++.-..+...       ...+..++.+.....  
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv~lkrds~q~wpsI~~~-------mP~~~~~~~y~~e~~--   81 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRVWLKRDSGQYWPSIYHY-------MPSPCSAMEYVSESR--   81 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCC----CeEEccccceeeeEEeccccccCchhhhh-------CCCCceEeeeeccce--
Confidence            45566777777776555433332    499999999999994 4456665555442       224555555555544  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                            .|+.+-.+|++.-+.+...-.    ....++.|. .|...+..+-|+...+++++.+.|..+.---.+.+..+.
T Consensus        82 ------~L~vg~~ngtvtefs~sedfn----km~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg  150 (404)
T KOG1409|consen   82 ------RLYVGQDNGTVTEFALSEDFN----KMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG  150 (404)
T ss_pred             ------EEEEEEecceEEEEEhhhhhh----hcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence                  888888889888777643211    111344443 467788999999888999999999766544444444332


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~  277 (341)
                      .....          .+..++.+    +-.+...|...|.|.+-.+.. .-.++..+.+|..++.+++|.|..+.|++|.
T Consensus       151 ~Y~~~----------~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~  216 (404)
T KOG1409|consen  151 GYNFE----------TPASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA  216 (404)
T ss_pred             ceEee----------ccCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc
Confidence            11110          00111122    111444555566666555443 2345788999999999999999999999999


Q ss_pred             CCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          278 GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       278 ~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .|..+.+||+.-++ ....+.+| .+.|..+..-+--+.+.+++.||.|.+||++...
T Consensus       217 ~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            99999999997544 34567777 8899999888888899999999999999998543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.7e-10  Score=99.64  Aligned_cols=283  Identities=13%  Similarity=0.118  Sum_probs=191.0

Q ss_pred             ceeeeecCCCCeEEEEEecCcc-----Cc-----cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC
Q 019405           15 LRALTFDSLGLIKVIEARGEHG-----GV-----PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~-----g~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~   84 (341)
                      .-+.+|+.||.+||..+....+     |.     ..+-+++.+|..+|..++|.....    .|-+...+|.|.||-+-.
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q----KLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ----KLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc----cccccCCCceEEEEeeec
Confidence            4467889999999999887521     21     112256788999999999887665    588899999999999988


Q ss_pred             CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-C
Q 019405           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-G  163 (341)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~  163 (341)
                      |....++-..      ....-+.++.|...+.        .+....+||.+.+=+++.+           ++|.-.-. .
T Consensus       103 gsW~EEMiNn------RnKSvV~SmsWn~dG~--------kIcIvYeDGavIVGsvdGN-----------RIwgKeLkg~  157 (1189)
T KOG2041|consen  103 GSWCEEMINN------RNKSVVVSMSWNLDGT--------KICIVYEDGAVIVGSVDGN-----------RIWGKELKGQ  157 (1189)
T ss_pred             ccHHHHHhhC------cCccEEEEEEEcCCCc--------EEEEEEccCCEEEEeeccc-----------eecchhcchh
Confidence            8776655442      1123345555554444        8888999999988776522           45553322 2


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC---CCccCccCCeeeeEEEEEe------cCCCCEEEEEe
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP---KNSLGIFTPTWFTSAAFLS------IDDHRKFVAGT  234 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~------~~~~~~l~~~~  234 (341)
                      ....+.|++|.+.++.+-..|.+++||.... ....++...   ........+..+..+.|..      .|+...|+++.
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence            3557889999999888888999999997532 111111000   0000000012244444421      46788999999


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---------CCEEEEECCCCeEEeEEeccccCcee
Q 019405          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      .+|.+.|..-.+...|+..-.+  ..+....|+++|..|++++.+         +.|.+|.. -|+.+.+++.+ ...|+
T Consensus       237 ~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp-g~~It  312 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP-GSCIT  312 (1189)
T ss_pred             cCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC-Cceee
Confidence            9999999876665555544333  678899999999999998764         24666654 47788888887 88999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +++|-..|-.++.+ .|+.|++=+++.
T Consensus       313 ~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  313 GLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             eeEEcCCceEEEEE-ecceEEEEeecc
Confidence            99998777666655 566666655543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.35  E-value=1.4e-10  Score=89.70  Aligned_cols=234  Identities=12%  Similarity=0.080  Sum_probs=141.0

Q ss_pred             cCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405           73 KNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (341)
Q Consensus        73 ~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~  150 (341)
                      ..|++.+|++.+.+...  ++...       ....+..+.|-....    .++-.++-+...|.+.++.........  .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~-------dts~~~dm~w~~~~~----~g~~~l~~a~a~G~i~~~r~~~~~ss~--~  110 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCT-------DTSTEFDMLWRIRET----DGDFNLLDAHARGQIQLYRNDEDESSV--H  110 (339)
T ss_pred             eccceEEEeecccccCccceeeee-------cccccceeeeeeccC----CccceeeeccccceEEEEeeccceeee--e
Confidence            35788889887765544  22210       011222233322111    011256667778888888765433110  0


Q ss_pred             CceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       151 ~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                      -..+..-... .....++.|++.+..++++-.+|.+.+-+.......  +..+.|.         -.+.-..|. ..+.+
T Consensus       111 L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He---------~E~Wta~f~-~~~pn  179 (339)
T KOG0280|consen  111 LRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE---------FEAWTAKFS-DKEPN  179 (339)
T ss_pred             ecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc---------eeeeeeecc-cCCCc
Confidence            0000000000 013457888999999999999999886555433222  2344433         335556663 34568


Q ss_pred             EEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCcee
Q 019405          229 KFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~  305 (341)
                      ++.+|+.|+.+..||++..+.-+ +..+-|...|.++.-+| .+.+|++|++|..|++||.+ -++++..-..  .+.|+
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v--~GGVW  257 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV--GGGVW  257 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc--ccceE
Confidence            99999999999999999433222 22456888999998876 57899999999999999999 4667654433  58899


Q ss_pred             EEEecCCCC-EEEEEeCCCcEEEEEcCC
Q 019405          306 SIARHPTLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       306 ~~~~~~~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                      .+.++|.-. .|+.++.-+-.+|-+++.
T Consensus       258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~  285 (339)
T KOG0280|consen  258 RIKHHPEIFHRLLAACMHNGAKILDSSD  285 (339)
T ss_pred             EEEecchhhhHHHHHHHhcCceEEEecc
Confidence            999999543 233333333355555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=2.9e-09  Score=92.94  Aligned_cols=219  Identities=13%  Similarity=0.080  Sum_probs=131.3

Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ceeEEEEeeecccccccCC
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESSC  151 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~i~~~~~~~~~~~~~~  151 (341)
                      ..|.++|.... ....+..+        ...+....|.+...        .++.....   ..+.+|++....       
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~--------~~~~~~p~~Spdg~--------~la~~~~~~~~~~i~v~d~~~g~-------  225 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRS--------REPILSPAWSPDGQ--------KLAYVSFESGKPEIYVQDLATGQ-------  225 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecC--------CCceecccCCCCCC--------EEEEEEcCCCCcEEEEEECCCCC-------
Confidence            35888887533 33333321        12344444444333        45444332   467788775332       


Q ss_pred             ceEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC
Q 019405          152 STVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (341)
Q Consensus       152 ~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (341)
                        ..... ...+.+....|+|+++.|+. .+.++  .|++||+.+++... +..+.         .......|  +|+++
T Consensus       226 --~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---------~~~~~~~~--s~dg~  290 (417)
T TIGR02800       226 --REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGP---------GIDTEPSW--SPDGK  290 (417)
T ss_pred             --EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCC---------CCCCCEEE--CCCCC
Confidence              12211 12345667899999987764 34443  58899998765433 22221         11334578  88999


Q ss_pred             EEEEEeCC-C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccC
Q 019405          229 KFVAGTND-H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       229 ~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      .|+..+.. +  .|+++|+.+++  ...+..+........|+|+|++|+.++.++   .|.+||+.++... .+...  .
T Consensus       291 ~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~  365 (417)
T TIGR02800       291 SIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT--G  365 (417)
T ss_pred             EEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC--C
Confidence            88766543 3  57888877654  444554556677889999999999888775   7899999876543 23222  2


Q ss_pred             ceeEEEecCCCCEEEEEeCCC---cEEEEEcCCCceeee
Q 019405          303 SIRSIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSA  338 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~  338 (341)
                      ......|+|+++.|+..+.++   .+++.+.. |+....
T Consensus       366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~  403 (417)
T TIGR02800       366 LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRAR  403 (417)
T ss_pred             CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeE
Confidence            345678999999888777654   45565644 444433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.34  E-value=2e-09  Score=92.47  Aligned_cols=259  Identities=14%  Similarity=0.093  Sum_probs=152.6

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      .-+++.++.+|.+..++..+.     ++  .|.... ..+.   .++..  .+..++.+..+|.|..||.++|+.+.++.
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG-----~~--~W~~~~~~~~~---~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDG-----KE--LWRAKLSSEVL---SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCC-----cE--eeeeccCceee---cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            456777888888888877654     33  232111 1111   11110  12357778889999999999998877765


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc--------
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT--------  164 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~--------  164 (341)
                      ...+....   .........  ++        .++.+..+|.+..++++.+.          .+|......+        
T Consensus       173 ~~~~~~~~---~~~~sp~~~--~~--------~v~~~~~~g~v~ald~~tG~----------~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       173 RVTPALTL---RGSASPVIA--DG--------GVLVGFAGGKLVALDLQTGQ----------PLWEQRVALPKGRTELER  229 (377)
T ss_pred             cCCCceee---cCCCCCEEE--CC--------EEEEECCCCEEEEEEccCCC----------EeeeeccccCCCCCchhh
Confidence            42111000   000001111  12        56777777887777764432          2333211000        


Q ss_pred             eEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       165 i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ...+.-+|  .+..++.++.+|.+..||.++++.++......           ......    .+..++.++.+|.+..+
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----------~~~p~~----~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----------YQGPAV----DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----------ccCceE----eCCEEEEECCCCeEEEE
Confidence            00000011  35677888889999999999999888765321           111222    45678888899999999


Q ss_pred             EcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee-EEEecCCCCEEEEEe
Q 019405          243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCG  320 (341)
Q Consensus       243 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~  320 (341)
                      |..+++. +..... ......+...  .+..|++++.+|.|+++|..+++.+.+++.+ ...+. +.++. + ..|+.++
T Consensus       295 d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-~~~~~~sp~~~-~-~~l~v~~  368 (377)
T TIGR03300       295 DRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD-GSGIASPPVVV-G-DGLLVQT  368 (377)
T ss_pred             ECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccccCCEEE-C-CEEEEEe
Confidence            9988764 333311 1111222222  3568889999999999999999999988865 43332 22332 3 3577888


Q ss_pred             CCCcEEEE
Q 019405          321 LDSYLRFW  328 (341)
Q Consensus       321 ~dg~v~iw  328 (341)
                      .||.|+.|
T Consensus       369 ~dG~l~~~  376 (377)
T TIGR03300       369 RDGDLYAF  376 (377)
T ss_pred             CCceEEEe
Confidence            99998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=1.2e-09  Score=95.45  Aligned_cols=157  Identities=16%  Similarity=0.116  Sum_probs=110.4

Q ss_pred             CCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCC
Q 019405          162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH  237 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~  237 (341)
                      ...+...+|+|++++|+....+   ..|++||+.+++...... ..         ..+.+++|  +|+++.|+. .+.++
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~--spDg~~l~~~~~~~~  256 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAF--SPDGSKLAVSLSKDG  256 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEE--CCCCCEEEEEECCCC
Confidence            4467888999999999877654   479999998875543222 11         22456788  889987764 44444


Q ss_pred             --eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          238 --QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       238 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                        .|++||+.++.  ...+..+........|+|+|+.|+..+. ++  .|+++|+.+++.. .+..+ ...+..+.|+|+
T Consensus       257 ~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spd  332 (417)
T TIGR02800       257 NPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPD  332 (417)
T ss_pred             CccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCC
Confidence              58888988754  3444445444557789999988876554 33  5888898876643 33333 456778899999


Q ss_pred             CCEEEEEeCCC---cEEEEEcCCCc
Q 019405          313 LPIIASCGLDS---YLRFWDIKTRQ  334 (341)
Q Consensus       313 ~~~l~s~~~dg---~v~iwd~~~~~  334 (341)
                      +++|+.++.++   .|.+||+.++.
T Consensus       333 g~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       333 GDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCEEEEEEccCCceEEEEEeCCCCC
Confidence            99998888776   78999988754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.30  E-value=1.7e-09  Score=82.83  Aligned_cols=196  Identities=9%  Similarity=-0.049  Sum_probs=132.1

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      .|+.++..|...+|.....       ++..++.+.... .|.-+.=.. ..-.+..++.|.++++.+++-+.....+..+
T Consensus        86 ~la~gG~~g~fd~~~~~tn-------~~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~  157 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTN-------DGHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ  157 (344)
T ss_pred             EEEeccccceeeeecccCc-------ccceeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence            7888889999999987542       233444443221 111111001 1223556788888888887654333333222


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE--EEecCCCeEEEEEcCCCceEEEEeCCCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSGD  281 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~  281 (341)
                      .         -.+.++++  +++++++++.+....|-.|.+......+..  ....++.-.+..|+.....+|++..||+
T Consensus       158 ~---------~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~  226 (344)
T KOG4532|consen  158 N---------LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT  226 (344)
T ss_pred             c---------cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence            1         11667788  899999999999999999998764332222  2223445567889999999999999999


Q ss_pred             EEEEECCCCeEE----eEEeccccCceeEEEecCCCC--EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          282 LASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       282 i~iwd~~~~~~~----~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|||++.....    ..-+.||.+.+..+.|++.|.  +|+..-.-+.+.+-|+++++-.+.+
T Consensus       227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            999999875432    233455699999999999776  5666656778999999998766554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.30  E-value=1.3e-07  Score=80.06  Aligned_cols=265  Identities=18%  Similarity=0.148  Sum_probs=150.1

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCC-Ccchheee-----ccC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLN-GDLRVAIS-----NAG   95 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~~~~~~-----~~~   95 (341)
                      .|.|..+.+... +|..+.+.+..........+++++++.    +|+++. .+|.|.++++.. +.......     ...
T Consensus        61 ~g~v~~~~i~~~-~g~L~~~~~~~~~g~~p~~i~~~~~g~----~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g  135 (345)
T PF10282_consen   61 SGGVSSYRIDPD-TGTLTLLNSVPSGGSSPCHIAVDPDGR----FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG  135 (345)
T ss_dssp             TTEEEEEEEETT-TTEEEEEEEEEESSSCEEEEEECTTSS----EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred             CCCEEEEEECCC-cceeEEeeeeccCCCCcEEEEEecCCC----EEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence            567778887765 244444444432334445677766665    777775 589999999986 43332211     111


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEE-EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                      +...........++.+.+..+        .+++ ......+.+++++.....    -..........+..-..+.|+|++
T Consensus       136 ~~~~rq~~~h~H~v~~~pdg~--------~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~~~~G~GPRh~~f~pdg  203 (345)
T PF10282_consen  136 PNPDRQEGPHPHQVVFSPDGR--------FVYVPDLGADRVYVYDIDDDTGK----LTPVDSIKVPPGSGPRHLAFSPDG  203 (345)
T ss_dssp             SSTTTTSSTCEEEEEE-TTSS--------EEEEEETTTTEEEEEEE-TTS-T----EEEEEEEECSTTSSEEEEEE-TTS
T ss_pred             CcccccccccceeEEECCCCC--------EEEEEecCCCEEEEEEEeCCCce----EEEeeccccccCCCCcEEEEcCCc
Confidence            111111223344444444333        4444 334456777777543210    001233345556678899999999


Q ss_pred             CEEEEe-eCCCeEEEEECC--CCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCC--
Q 019405          175 KFSLFG-GKGVEVNVWDLD--KCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA--  246 (341)
Q Consensus       175 ~~l~~~-~~d~~v~i~d~~--~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~--  246 (341)
                      +++++. -.++.|.++++.  ++..  +..+......   .........+++  +|++++|+++. ..+.|.+|++..  
T Consensus       204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~i--spdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---FTGENAPAEIAI--SPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---SCSSSSEEEEEE---TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             CEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---ccccCCceeEEE--ecCCCEEEEEeccCCEEEEEEEecCC
Confidence            988665 457889999987  3322  2222221110   111124677888  89999888765 467899999943  


Q ss_pred             CC-ceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEEC--CCCeEEeEEeccccCceeEEEe
Q 019405          247 QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDI--RTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       247 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      ++ ..+..+......-+.++++|+|++|+++.. ++.|.+|++  ++|++...-....-....|+.|
T Consensus       279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            22 123334434445789999999999998874 578998865  5777654432211344556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=1.2e-10  Score=90.78  Aligned_cols=264  Identities=12%  Similarity=0.103  Sum_probs=165.2

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCC----CCCCCCceeeEeeeecccccccc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSG----AQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      .++++-|...    |.||++|...|+|.++.-+...     ...+++.|...-    ...-+..+..+.|+.+.+.    
T Consensus        28 ~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r----   99 (460)
T COG5170          28 KITAVEFDET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR----   99 (460)
T ss_pred             eeeEEEeccc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc----
Confidence            3444444433    4599999999999999876432     223344432210    0112356677888887653    


Q ss_pred             ccceeEEEcccceeEEEEeeecccc----------------------------ccc-CC-----ceEEEEEeecCCceEE
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVS----------------------------AES-SC-----STVKSWNVCASGTIAF  167 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~----------------------------~~~-~~-----~~v~~~~~~~~~~i~~  167 (341)
                        +.++..+.|.++++|.+......                            ..+ .+     .+.+++...|.-.|.+
T Consensus       100 --~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         100 --NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             --ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence              27888889999999998654210                            000 11     1123343345556889


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeee---cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      +.++.|.+.++++ .|-.|.+|+++.......   ++.+....+    ..-|++..|+| ...+.+.-.+..|.|++-|+
T Consensus       178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeL----teVItSaeFhp-~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEEL----TEVITSAEFHP-EMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHH----HHHHhhcccCH-hHcceEEEecCCCcEEehhh
Confidence            9999888888764 566899999875443333   222222111    12377788852 23456666778999999999


Q ss_pred             CCCCc-----eeEEE----------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEecc---------
Q 019405          245 SAQRR-----PVMSF----------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGK---------  299 (341)
Q Consensus       245 ~~~~~-----~~~~~----------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~---------  299 (341)
                      +....     .+...          .+-...|..+.|+++|+++++-+. -+|+|||.+.. .++.++..|         
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d  330 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELND  330 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHh
Confidence            85321     11111          112346888999999999987654 58999999854 466666544         


Q ss_pred             --ccCce---eEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          300 --CSGSI---RSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       300 --~~~~i---~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                        ....|   ..+.|+.+...+++|+.....-++-+.
T Consensus       331 ~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         331 VYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             hhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence              12233   347888888999999988877777643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=2.3e-08  Score=95.50  Aligned_cols=167  Identities=10%  Similarity=-0.004  Sum_probs=111.1

Q ss_pred             EEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCC------CCccCccCCeeeeEEEEEecCCCC-EEEEEeCCC
Q 019405          166 AFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDH  237 (341)
Q Consensus       166 ~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~  237 (341)
                      ..++++| ++.++++.+.++.|++||..++.... +....      ........-.....+++  +|+++ ++++-+.++
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav--spdG~~LYVADs~n~  762 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL--SPDLKELYIADSESS  762 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE--eCCCCEEEEEECCCC
Confidence            5789999 55666777778899999998765421 11110      00000001123567888  78887 555666779


Q ss_pred             eEEEEEcCCCCceeEE------------EEec--------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          238 QVRLYDTSAQRRPVMS------------FDFR--------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~------------~~~~--------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      .|++||+.++...+..            +..+        -..-..++++++|.++++-..++.|++||..++.......
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence            9999999875421110            0000        0123578999999988888889999999998876553221


Q ss_pred             cc------------ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          298 GK------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       298 ~~------------~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      ..            .-.....++++++|+++++-+.++.|++||+++++.
T Consensus       843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            00            012567899999999999989999999999998765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=9.2e-09  Score=89.21  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=100.5

Q ss_pred             CceEEEEecCCCCEEEEeeC-----CCeEEEEECCCC---ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      +.....+|+|||+.|+..+.     +..+..|++..+   +.........         ......+|  +|+|+.|+..+
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~w--SPDG~~Laf~s  299 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSF--SPDGTRLVFVS  299 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEE--CCCCCEEEEEE
Confidence            34456799999998886543     223444676643   2221111110         12345688  89999887665


Q ss_pred             -CCCeEEEE--EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCceeEEE
Q 019405          235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (341)
Q Consensus       235 -~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~  308 (341)
                       .++...+|  ++.........+..+...+....|+|+|+.|+....+   ..|++||+.+++...... . ...+....
T Consensus       300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~-~~~~~~p~  377 (428)
T PRK01029        300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-S-PENKESPS  377 (428)
T ss_pred             CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-C-CCCccceE
Confidence             45655555  4432111244455455567789999999988866543   369999999887643332 2 34567899


Q ss_pred             ecCCCCEEEEEeC---CCcEEEEEcCCCce
Q 019405          309 RHPTLPIIASCGL---DSYLRFWDIKTRQL  335 (341)
Q Consensus       309 ~~~~~~~l~s~~~---dg~v~iwd~~~~~~  335 (341)
                      |+|||+.|+....   ...|+++|+.+++.
T Consensus       378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        378 WAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            9999997765433   35788999987654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=4e-11  Score=94.62  Aligned_cols=148  Identities=13%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEE
Q 019405          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMS  253 (341)
Q Consensus       178 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~  253 (341)
                      ++.+.+..|-+-|++++.... |..          .+-|.++.|  ...++++..|+.+|.|..+|++...    .+.+.
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~s----------ksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQS----------KSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             ecccccceeEEEEeecccccc-ccc----------chhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            445566678888888764432 221          133777788  5678899999999999999999752    23444


Q ss_pred             EEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeE---EeEEeccccCceeE--EEecCCCCEEEEEeCCCcEEE
Q 019405          254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRS--IARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~--~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      + .|.+.|+++..-. ++++|++.+.+|+|++||++--++   +..+.+| -+.-.-  +-.++....+++++.|...||
T Consensus       295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEE
Confidence            4 3888999987766 778999999999999999987666   8888888 332222  233456678899999999999


Q ss_pred             EEcCCCceeeeec
Q 019405          328 WDIKTRQLLSAVC  340 (341)
Q Consensus       328 wd~~~~~~~~~~~  340 (341)
                      |.+++|+++.++.
T Consensus       373 Wsl~~ghLl~tip  385 (425)
T KOG2695|consen  373 WSLDSGHLLCTIP  385 (425)
T ss_pred             EecccCceeeccC
Confidence            9999999998864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=3.3e-07  Score=73.59  Aligned_cols=276  Identities=12%  Similarity=0.080  Sum_probs=166.1

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCC--CcchheeeccCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLRVAISNAGDS   97 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~~~~~~~~~~   97 (341)
                      ..-|.+|++... +|.....+ .-......+.++++++..    +|.++-.   +|.|.-|.++.  |+....-+..  .
T Consensus        15 s~gI~v~~ld~~-~g~l~~~~-~v~~~~nptyl~~~~~~~----~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~   86 (346)
T COG2706          15 SQGIYVFNLDTK-TGELSLLQ-LVAELGNPTYLAVNPDQR----HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L   86 (346)
T ss_pred             CCceEEEEEeCc-ccccchhh-hccccCCCceEEECCCCC----EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c
Confidence            467899999966 34333332 335667788889888776    6777544   57788887764  4432221111  0


Q ss_pred             CCCCCCCceeeEeeeeccccccccccceeE-EEcccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEE
Q 019405           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS  168 (341)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~  168 (341)
                          ...+.+.+.. +.++.       .++ +-...|.+.++.+......    ...+.+....        ....+...
T Consensus        87 ----~g~~p~yvsv-d~~g~-------~vf~AnY~~g~v~v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a  150 (346)
T COG2706          87 ----PGSPPCYVSV-DEDGR-------FVFVANYHSGSVSVYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSA  150 (346)
T ss_pred             ----CCCCCeEEEE-CCCCC-------EEEEEEccCceEEEEEcccCCcc----ccceeeeecCCCCCCccccCCcccee
Confidence                1122233333 33331       444 4455688888887543211    0011111110        01227788


Q ss_pred             EecCCCCEEEEeeCC-CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCC
Q 019405          169 KVDISEKFSLFGGKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA  246 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  246 (341)
                      .+.|+++++++.... ..|.+|++..+.....-...-      ......+.+.|  +|++++....+ -+++|-+|....
T Consensus       151 ~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         151 NFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             eeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEcC
Confidence            999999999987542 379999998765433221111      11134678899  78998877654 589999999887


Q ss_pred             CCceeEEEEe---------cCCCeEEEEEcCCCceEEEEeC-CCCEEEEECC--CCeEE--eEEeccccCceeEEEecCC
Q 019405          247 QRRPVMSFDF---------RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR--TGKLL--GCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       247 ~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~~~--~~~~~~~~~~i~~~~~~~~  312 (341)
                      ....+..++.         .......+..+|+|++|+++.. ...|.+|.+.  ++++.  .....+ ...-+...|++.
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~  301 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS  301 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence            4222333332         2345677899999999998874 3578888765  34332  222222 334678899999


Q ss_pred             CCEEEEEeCCC-cEEEEEcC
Q 019405          313 LPIIASCGLDS-YLRFWDIK  331 (341)
Q Consensus       313 ~~~l~s~~~dg-~v~iwd~~  331 (341)
                      +++|+.+..++ .|.+|.+.
T Consensus       302 g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         302 GRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCEEEEEccCCCcEEEEEEc
Confidence            99999988664 68888654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.7e-09  Score=91.82  Aligned_cols=159  Identities=10%  Similarity=0.024  Sum_probs=107.6

Q ss_pred             cCCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND  236 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d  236 (341)
                      +...+....|+|||+.|+..+.+   ..|.+||+.+++....... .         .......|  +|+++.|+. ...+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~---------g~~~~~~~--SpDG~~la~~~~~~  264 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E---------GLNGAPAW--SPDGSKLAFVLSKD  264 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C---------CCcCCeEE--CCCCCEEEEEEccC
Confidence            34578889999999998876543   3699999988765432211 1         12345788  899988874 4444


Q ss_pred             C--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       237 ~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      +  .|++||+.+++  ...+..+........|+|+|+.|+..+. ++  .|+++|+.+++..... .. ........|+|
T Consensus       265 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~-~~~~~~~~~Sp  340 (430)
T PRK00178        265 GNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FV-GNYNARPRLSA  340 (430)
T ss_pred             CCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC-CCCccceEECC
Confidence            4  68888988754  4445555555667899999988776553 33  5888888877643322 11 22334578999


Q ss_pred             CCCEEEEEeCC-C--cEEEEEcCCCce
Q 019405          312 TLPIIASCGLD-S--YLRFWDIKTRQL  335 (341)
Q Consensus       312 ~~~~l~s~~~d-g--~v~iwd~~~~~~  335 (341)
                      +|+.|+..+.+ +  .|.++|+.+++.
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCE
Confidence            99988777643 3  588899988754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=6e-10  Score=93.99  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=125.3

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe------------cCCCCEEEEEeCCCeE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------IDDHRKFVAGTNDHQV  239 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~l~~~~~d~~i  239 (341)
                      |...++|....||.+++||..+++....+.....-.-......|...+...|            +.+-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567889999999999999998887776654321110000012222222211            1233567888999999


Q ss_pred             EEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          240 RLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      .+|+...++. ...+.  .|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.++.. ...+.+++.+||+..|+
T Consensus        83 ~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGKILL  160 (541)
T ss_pred             EEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCCEEE
Confidence            9999998764 33443  48889999999999899999999999999999999999999987 78899999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeee
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +++  +.|++||+++++.+.++
T Consensus       161 ~as--~~ik~~~~~~kevv~~f  180 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITF  180 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEe
Confidence            886  56999999999988775

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=8.6e-09  Score=86.72  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=101.4

Q ss_pred             EEEeecCCceEEEEecCCCCEEEE--eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405          156 SWNVCASGTIAFSKVDISEKFSLF--GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (341)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  233 (341)
                      ...+...++|.++.|++++..+++  |.+-..+.|||++ +..+..+...           +-+++-|  +|.|++++.+
T Consensus       264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-----------pRN~~~f--np~g~ii~lA  329 (566)
T KOG2315|consen  264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-----------PRNTAFF--NPHGNIILLA  329 (566)
T ss_pred             EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-----------CccceEE--CCCCCEEEEe
Confidence            344455789999999999977664  5677889999985 6677776653           2456778  8999999987


Q ss_pred             eCC---CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------CCCEEEEECCCCeEEeEEeccccCce
Q 019405          234 TND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSI  304 (341)
Q Consensus       234 ~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~i  304 (341)
                      +.+   |.+-+||+.+.+. +..+...  ..+-+.|+|||++++++..      |+.++||+. +|.+++...-.  ...
T Consensus       330 GFGNL~G~mEvwDv~n~K~-i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~--sEL  403 (566)
T KOG2315|consen  330 GFGNLPGDMEVWDVPNRKL-IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFK--SEL  403 (566)
T ss_pred             ecCCCCCceEEEeccchhh-ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhh--HhH
Confidence            764   7899999998554 6666543  3456899999999998875      678999997 47766544332  257


Q ss_pred             eEEEecC
Q 019405          305 RSIARHP  311 (341)
Q Consensus       305 ~~~~~~~  311 (341)
                      +.+.|-|
T Consensus       404 ~qv~W~P  410 (566)
T KOG2315|consen  404 LQVEWRP  410 (566)
T ss_pred             hheeeee
Confidence            7778875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.24  E-value=1.7e-08  Score=80.93  Aligned_cols=224  Identities=17%  Similarity=0.217  Sum_probs=139.2

Q ss_pred             CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce
Q 019405           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (341)
Q Consensus        74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~  153 (341)
                      +|.|..||..+|+.+.......      ......+. .....+        .+++++.++.+..++...++         
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~------~~~~~~~~-~~~~~~--------~v~~~~~~~~l~~~d~~tG~---------   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP------GIGGPVAT-AVPDGG--------RVYVASGDGNLYALDAKTGK---------   57 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS------SCSSEEET-EEEETT--------EEEEEETTSEEEEEETTTSE---------
T ss_pred             CCEEEEEECCCCCEEEEEECCC------CCCCccce-EEEeCC--------EEEEEcCCCEEEEEECCCCC---------
Confidence            6899999999999888775411      01222211 222223        67777888889888864332         


Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                       .+|.......+.... ...+..+++++.++.|..+|..+|+.++.. .... .....   .......+    .+..++.
T Consensus        58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~  127 (238)
T PF13360_consen   58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV---RSSSSPAV----DGDRLYV  127 (238)
T ss_dssp             -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST---B--SEEEE----ETTEEEE
T ss_pred             -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc---ccccCceE----ecCEEEE
Confidence             345544333322211 224556677778889999999999999884 3221 10000   11222233    4778888


Q ss_pred             EeCCCeEEEEEcCCCCceeEEEEecCCC----------e-EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405          233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      +..++.|..+|.++++. +.........          + ..+.+. ++ .++.+..++.+.-+|+.+++.+.... .  
T Consensus       128 ~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~--  201 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-I--  201 (238)
T ss_dssp             EETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-S--
T ss_pred             EeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-C--
Confidence            88899999999999875 5555553322          1 222232 44 77777778864444999999765333 2  


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ..+..+ ....+..|+.++.++.|..||+++|+.+.+
T Consensus       202 ~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  202 SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            223331 346777788777999999999999998764

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.24  E-value=1.3e-10  Score=93.50  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCce----eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCe
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQ  238 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~  238 (341)
                      ..+..++.++++|++..+....++++.....    ......+          ..-+++.|.  .+...+..+.   ....
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----------~~~~ai~~~--~~~~sv~v~dkagD~~~  133 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----------KRPTAISFI--REDTSVLVADKAGDVYS  133 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----------cCcceeeee--eccceEEEEeecCCcee
Confidence            3445677888999888888877777764332    1111111          112334442  2233333333   3344


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      +.+|....+.  ...+-+|-+-++.++|+||+++|+++..|..|++-....-..+..|.-.|..-|..++.-++. .|++
T Consensus       134 ~di~s~~~~~--~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS  210 (390)
T KOG3914|consen  134 FDILSADSGR--CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLS  210 (390)
T ss_pred             eeeecccccC--cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeee
Confidence            5555544322  444567989999999999999999999999999988776666666654338999999987655 5899


Q ss_pred             EeCCCcEEEEEcCCCceeeee
Q 019405          319 CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|.|++|++||+.+|+++.++
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             cCCCCcEEEEecccCCccccc
Confidence            999999999999999998764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2e-08  Score=87.87  Aligned_cols=213  Identities=12%  Similarity=0.072  Sum_probs=124.3

Q ss_pred             eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-cc--ceeEEEEeeecccccccCCc
Q 019405           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TK--GKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~--g~~~i~~~~~~~~~~~~~~~  152 (341)
                      .|.++|.+.+. ...+..        +...+....|.+...        .++..+ .+  ..+.+|++....        
T Consensus       180 ~l~~~d~~g~~-~~~l~~--------~~~~~~~p~wSpDG~--------~la~~s~~~~~~~l~~~~l~~g~--------  234 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQ--------SREPILSPRWSPDGK--------RIAYVSFEQKRPRIFVQNLDTGR--------  234 (430)
T ss_pred             EEEEECCCCCC-ceEEec--------CCCceeeeeECCCCC--------EEEEEEcCCCCCEEEEEECCCCC--------
Confidence            47777876443 333332        224455555555444        554443 33  346666664322        


Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEE-eeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                      ...+..  ..+......|+|||+.|+. ...++  .|++||+.+++... +....         .......|  +|+++.
T Consensus       235 ~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~--spDg~~  300 (430)
T PRK00178        235 REQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFW--GKDGRT  300 (430)
T ss_pred             EEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEE--CCCCCE
Confidence            111111  1234456899999998874 44444  68888998776433 32221         12345678  899988


Q ss_pred             EEEEeC-CC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-C--CEEEEECCCCeEEeEEeccccCc
Q 019405          230 FVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       230 l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      |+..+. ++  .|+++|+.+++  ...+...........|+|+|+.|+....+ +  .|.++|+.+++... +..  ...
T Consensus       301 i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~~  375 (430)
T PRK00178        301 LYFTSDRGGKPQIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TSL  375 (430)
T ss_pred             EEEEECCCCCceEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CCC
Confidence            776654 33  57777877655  23333222334457899999998876643 3  48889998876532 221  122


Q ss_pred             eeEEEecCCCCEEEEEeCC---CcEEEEEcCC
Q 019405          304 IRSIARHPTLPIIASCGLD---SYLRFWDIKT  332 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~d---g~v~iwd~~~  332 (341)
                      .....|+|+|+.++..+.+   ..|.+.++..
T Consensus       376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        376 DESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            3356899999988776644   2467777753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2.5e-08  Score=87.22  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=97.1

Q ss_pred             eEEEEecCCCCEEEE-eeCCCe--EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC--e
Q 019405          165 IAFSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q  238 (341)
Q Consensus       165 i~~~~~~~~~~~l~~-~~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~--~  238 (341)
                      .....|+||++.|+. ...++.  |+++|+.+++... +..+.         .......|  +|+++.|+..+. ++  .
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~w--SpDG~~I~f~s~~~g~~~  331 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSW--HPDGKSLIFTSERGGKPQ  331 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCce
Confidence            346799999998775 455554  8888888765433 22221         22455688  899998876553 33  5


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      |.++|+.+++  ...+..........+|+|+|++|+..+. ++  .|.++|+.+++... +...  .......|+|+|+.
T Consensus       332 Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~--~~d~~ps~spdG~~  406 (448)
T PRK04792        332 IYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST--RLDESPSVAPNGTM  406 (448)
T ss_pred             EEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC--CCCCCceECCCCCE
Confidence            6677777654  3333323233445789999998877654 33  46667888776532 2221  12234589999998


Q ss_pred             EEEEeCC-C--cEEEEEcCCCceeeee
Q 019405          316 IASCGLD-S--YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       316 l~s~~~d-g--~v~iwd~~~~~~~~~~  339 (341)
                      |+..+.+ +  .+++++.+ |+....+
T Consensus       407 I~~~~~~~g~~~l~~~~~~-G~~~~~l  432 (448)
T PRK04792        407 VIYSTTYQGKQVLAAVSID-GRFKARL  432 (448)
T ss_pred             EEEEEecCCceEEEEEECC-CCceEEC
Confidence            7765543 3  36777764 5544443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.21  E-value=3.6e-10  Score=106.60  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=132.1

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..+.++.-+|...+-++|+.||.|++|....++.+..+.....        ..|+.+.|  +.+|+.+..+..||.+.+|
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------s~vtr~~f--~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------SRVTRSRF--NHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--------chhhhhhh--cccCCceeeeccCCceeec
Confidence            4677888899999999999999999999998888877765542        45888899  7889999999999999999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCC---eEEeEEeccccCceeEEEecCCCCEE
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTLPII  316 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l  316 (341)
                      ...  .++....+.|+.....+.|-.  ..+++++   .++.+.+||..-.   .++.  ..| .+.++++++-|..+.|
T Consensus      2279 q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2279 QAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             ccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcCcceEE
Confidence            987  356888888999888888865  4666654   3578999997532   2343  555 8899999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeee
Q 019405          317 ASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       317 ~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++||.+|.|++||++..++++++
T Consensus      2352 isggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             EecCCcCcEEEeehHHHHHHHHh
Confidence            99999999999999988776653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=7.4e-09  Score=90.49  Aligned_cols=158  Identities=12%  Similarity=0.072  Sum_probs=104.5

Q ss_pred             CCceEEEEecCCCCEEEEeeCC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCC
Q 019405          162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH  237 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~  237 (341)
                      ...+....|+|||+.|+..+.+   ..|++||+.+++........          .......|  +|+++.|+. ...++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~----------g~~~~~~w--SPDG~~La~~~~~~g  284 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP----------GINGAPRF--SPDGKKLALVLSKDG  284 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC----------CCcCCeeE--CCCCCEEEEEEeCCC
Confidence            4567889999999998876543   36899999877653221111          11335688  899998765 45566


Q ss_pred             e--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       238 ~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .  |+++|+.+++  ...+..+.......+|+|+|+.|+..+. ++  .|+++|+.+++.... ... .......+|+|+
T Consensus       285 ~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~-g~~~~~~~~SpD  360 (448)
T PRK04792        285 QPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE-GEQNLGGSITPD  360 (448)
T ss_pred             CeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC-CCCCcCeeECCC
Confidence            4  7777887654  4455555555677899999988876553 33  477778877765332 211 223456789999


Q ss_pred             CCEEEEEeCC-C--cEEEEEcCCCce
Q 019405          313 LPIIASCGLD-S--YLRFWDIKTRQL  335 (341)
Q Consensus       313 ~~~l~s~~~d-g--~v~iwd~~~~~~  335 (341)
                      |++|+..+.+ +  .|.++|+.+++.
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCe
Confidence            9988776543 3  456678877754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.17  E-value=1.4e-07  Score=73.35  Aligned_cols=204  Identities=16%  Similarity=0.166  Sum_probs=128.5

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecC--CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      .+++.-.|..+.|......-      ...+....+...  ..=..++|+||+.+||.+...|+|++||+.. ..+..+..
T Consensus        10 k~lAi~qd~~iEiRsa~Ddf------~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p   82 (282)
T PF15492_consen   10 KLLAILQDQCIEIRSAKDDF------SSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPP   82 (282)
T ss_pred             cEEEEEeccEEEEEeccCCc------hheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCc
Confidence            77777778888777653221      012233333221  2345789999999999999999999999964 55555544


Q ss_pred             CCCCccCccCCeeeeEEEEEecCC-----CCEEEEEeCCCeEEEEEcCCC--C--ceeEEEEe---cCCCeEEEEEcCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQ--R--RPVMSFDF---RETPIKAVAEEPDS  270 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~--~--~~~~~~~~---~~~~v~~~~~~~~~  270 (341)
                      .......  -...|..+.|.. +.     ...|++-..+|.++-|-+..+  +  +..+.+..   +...|.++.++|..
T Consensus        83 ~~~~~~d--~~~Aiagl~Fl~-~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   83 AMSFPGD--LSDAIAGLIFLE-YKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             ccccCCc--cccceeeeEeec-cccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            3211111  124577777752 22     224566667888887765321  1  12333333   35689999999998


Q ss_pred             ceEEEEeCCC-----------CEEEEECCCCeE-----------------------Ee-----EEeccccCceeEEEecC
Q 019405          271 FNIYIGNGSG-----------DLASVDIRTGKL-----------------------LG-----CFIGKCSGSIRSIARHP  311 (341)
Q Consensus       271 ~~l~~g~~dg-----------~i~iwd~~~~~~-----------------------~~-----~~~~~~~~~i~~~~~~~  311 (341)
                      ++|++|+...           -+.-|.+-++.+                       +.     ..++.....|..|..||
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            8888776421           255664432110                       00     01122256899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          312 TLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       312 ~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ||..||+...+|.|.+|++.+-++.++
T Consensus       240 dg~~La~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecCcchhhcc
Confidence            999999999999999999998665543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.15  E-value=1.8e-07  Score=80.81  Aligned_cols=136  Identities=13%  Similarity=0.033  Sum_probs=86.8

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      +..++.++.+|.+..+|..+++.++......           ...+..    .+..++.++.++.+..+|..+++. +-.
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----------~~~~~~----~~~~vy~~~~~g~l~ald~~tG~~-~W~  319 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-----------VNDFAV----DGGRIYLVDQNDRVYALDTRGGVE-LWS  319 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----------ccCcEE----ECCEEEEEcCCCeEEEEECCCCcE-EEc
Confidence            4456666777888888888888777654221           111222    356777778899999999988764 222


Q ss_pred             EEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCCCcEEEEEc
Q 019405          254 FDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       254 ~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ... ......+...  .+..|+.++.+|.|+..|..+|+.+.+.+.. ...+.+ ..+  .+..|+.++.||.|+.++.
T Consensus       320 ~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        320 QSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            211 1111122222  2457888999999999999999998877643 233322 222  2447888899999988765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.6e-06  Score=69.81  Aligned_cols=268  Identities=12%  Similarity=0.115  Sum_probs=151.9

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCC-CcchheeeccCCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLN-GDLRVAISNAGDSGAQ  100 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~  100 (341)
                      +|.+..+.+... .|..+++.+......+-+.++++.++.    +|+++.. -|.|.++-+.+ |...............
T Consensus        63 ~ggvaay~iD~~-~G~Lt~ln~~~~~g~~p~yvsvd~~g~----~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~  137 (346)
T COG2706          63 EGGVAAYRIDPD-DGRLTFLNRQTLPGSPPCYVSVDEDGR----FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG  137 (346)
T ss_pred             cCcEEEEEEcCC-CCeEEEeeccccCCCCCeEEEECCCCC----EEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence            456666666653 354444333322333336777776665    7888764 58899999865 5444333332222222


Q ss_pred             CCCC---ceeeEeeeeccccccccccceeEEEcc-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405          101 PEDD---GIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus       101 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                      +++.   +-....-+.++.+       .+++..- --.+.+|+++.++..      ......+..+..-..+.|+|++++
T Consensus       138 p~~rQ~~~h~H~a~~tP~~~-------~l~v~DLG~Dri~~y~~~dg~L~------~~~~~~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         138 PHERQESPHVHSANFTPDGR-------YLVVPDLGTDRIFLYDLDDGKLT------PADPAEVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             CCccccCCccceeeeCCCCC-------EEEEeecCCceEEEEEcccCccc------cccccccCCCCCcceEEEcCCCcE
Confidence            2221   1122333444432       4444432 246667777644321      111222344566789999999999


Q ss_pred             EEEee-CCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEE
Q 019405          177 SLFGG-KGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       177 l~~~~-~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~  253 (341)
                      .+... .+++|.+|..... ..+..++....-+-......+...+..  +++|++|.++.. ...|.+|.+......+..
T Consensus       205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi--s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~  282 (346)
T COG2706         205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI--SPDGRFLYASNRGHDSIAVFSVDPDGGKLEL  282 (346)
T ss_pred             EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE--CCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence            88655 4889999998763 333333333222222334466777777  999999988753 347888877654322222


Q ss_pred             E---EecCCCeEEEEEcCCCceEEEEeCC-CCEEEEEC--CCCeEEeEEeccccCceeEEEec
Q 019405          254 F---DFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDI--RTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       254 ~---~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      .   ..+...-+...++|.+++|+++..+ ..|.+|..  .+|++-............|+.|.
T Consensus       283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            2   2233446789999999999998875 45777754  46665443332113344455553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.12  E-value=1.9e-07  Score=77.98  Aligned_cols=257  Identities=15%  Similarity=0.124  Sum_probs=148.9

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCC--ce-eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hheee--cc
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSS--NC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAIS--NA   94 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~--~~-~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~--~~   94 (341)
                      ..+.+|++..+     .++..|.....+  .- .+.|+.++.    |+|=- ....+.|+++ +...    .+.++  +.
T Consensus       108 n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         108 NNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSIDDK----YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             CceeEEeccCc-----eeEeeccccCCcccccceeeeeecch----hhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence            34678888776     566666554333  33 667888777    43332 3467999996 3221    11111  11


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                      .+..+++..+.-. +++|.+..            ....+.+++|.+.......     +..++.+    .-..+.|++.|
T Consensus       177 ~dFsisP~~n~~~-la~~tPEk------------~~kpa~~~i~sIp~~s~l~-----tk~lfk~----~~~qLkW~~~g  234 (561)
T COG5354         177 LDFSISPEGNHDE-LAYWTPEK------------LNKPAMVRILSIPKNSVLV-----TKNLFKV----SGVQLKWQVLG  234 (561)
T ss_pred             eeEEecCCCCCce-EEEEcccc------------CCCCcEEEEEEccCCCeee-----eeeeEee----cccEEEEecCC
Confidence            1111122211111 33333332            1345667777765433211     2222332    22356777777


Q ss_pred             CEEEEee-----------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE--eCCCeEEE
Q 019405          175 KFSLFGG-----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRL  241 (341)
Q Consensus       175 ~~l~~~~-----------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--~~d~~i~i  241 (341)
                      ++++.--           ....+++++++.... .....         -.++|...+|  .|.++.+++.  ..+-.+.+
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~---------~~~pVhdf~W--~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKD---------LKDPVHDFTW--EPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeeccccc-ceecc---------ccccceeeee--cccCCceeEEecccccceee
Confidence            7766321           124577777763221 11111         1266999999  7777766654  57888999


Q ss_pred             EEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEE-eEEeccccCceeEEEecCCCCEEE
Q 019405          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      +|++..  ...  ...+..=..+.|+|.+++++.++-|   |.+.+||....... ..+.+.   ...-+.|+|+++++.
T Consensus       303 ~~lr~N--l~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~  375 (561)
T COG5354         303 FDLRGN--LRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYD  375 (561)
T ss_pred             cccccc--eEE--ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEE
Confidence            999963  132  2334455678899999999987755   77999998765443 366554   345567999999887


Q ss_pred             EEe------CCCcEEEEEcCC
Q 019405          318 SCG------LDSYLRFWDIKT  332 (341)
Q Consensus       318 s~~------~dg~v~iwd~~~  332 (341)
                      +..      .|..|.|||+..
T Consensus       376 ~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         376 TDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             ecCCCcccccCcceEEEEecC
Confidence            664      578899999964

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.12  E-value=5.7e-07  Score=74.71  Aligned_cols=234  Identities=12%  Similarity=0.132  Sum_probs=138.0

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCC-------CceeEEEeccCCCCCceEEEEc-c-CCeEEEeeCCCCcchheee
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVAR-K-NGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~s~~~~~~~~~l~~~~-~-dg~i~iw~~~~~~~~~~~~   92 (341)
                      .++.|.+|++.+.     +++..+.-...       ....+++++|++    +|++.. . +..|.+.|+.+++.+.++.
T Consensus        75 ~~d~V~v~D~~t~-----~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk----~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        75 RTDYVEVIDPQTH-----LPIADIELPEGPRFLVGTYPWMTSLTPDNK----TLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             CCCEEEEEECccC-----cEEeEEccCCCchhhccCccceEEECCCCC----EEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence            6788899998886     55544432211       122456666665    777665 3 7899999999999988887


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CCceEEE
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFS  168 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~  168 (341)
                      .-         +   |...+.....       .+..-+.||......++.....   ......+++...    ..+    
T Consensus       146 vp---------~---~~~vy~t~e~-------~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~vf~~~~~~v~~rP----  199 (352)
T TIGR02658       146 VP---------D---CYHIFPTAND-------TFFMHCRDGSLAKVGYGTKGNP---KIKPTEVFHPEDEYLINHP----  199 (352)
T ss_pred             CC---------C---CcEEEEecCC-------ccEEEeecCceEEEEecCCCce---EEeeeeeecCCccccccCC----
Confidence            51         1   1111111110       2223334554444333322110   011122222210    111    


Q ss_pred             EecC-CCCEEEEeeCCCeEEEEECCCCc-----eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--------
Q 019405          169 KVDI-SEKFSLFGGKGVEVNVWDLDKCE-----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------  234 (341)
Q Consensus       169 ~~~~-~~~~l~~~~~d~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------  234 (341)
                      .+.+ +++++..... |.|.+.|+....     ....+......  .--.+....-+++  +++++++.+..        
T Consensus       200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~--~~wrP~g~q~ia~--~~dg~~lyV~~~~~~~~th  274 (352)
T TIGR02658       200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA--DGWRPGGWQQVAY--HRARDRIYLLADQRAKWTH  274 (352)
T ss_pred             ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccc--cccCCCcceeEEE--cCCCCEEEEEecCCccccc
Confidence            3345 7777776666 999999964432     22222111100  0012344555888  78888888743        


Q ss_pred             --CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEe-CCCCEEEEECCCCeEEeEEe
Q 019405          235 --NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       235 --~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~~  297 (341)
                        ..+.|.++|..+.+. +..+.. ...+..++++||++ +|++.+ .++.|.++|..+++.+.++.
T Consensus       275 k~~~~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       275 KTASRFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             cCCCCEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence              125799999998765 555553 35789999999999 888777 57889999999999998883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.9e-10  Score=94.76  Aligned_cols=213  Identities=14%  Similarity=0.178  Sum_probs=143.7

Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEE
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSL  178 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~  178 (341)
                      .+|...+..+...+..+        .+++++.|.++++|++....+..+.   ....|. ..|..+|..+.|-.+-++++
T Consensus       732 ~GH~~~iRai~AidNEN--------SFiSASkDKTVKLWSik~EgD~~~t---saCQfTY~aHkk~i~~igfL~~lr~i~  800 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNEN--------SFISASKDKTVKLWSIKPEGDEIGT---SACQFTYQAHKKPIHDIGFLADLRSIA  800 (1034)
T ss_pred             cCcHHHhHHHHhccccc--------ceeeccCCceEEEEEeccccCcccc---ceeeeEhhhccCcccceeeeeccceee
Confidence            44556666666666666        8999999999999999755432111   112222 24678899999988888887


Q ss_pred             EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEE--
Q 019405          179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFD--  255 (341)
Q Consensus       179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~--  255 (341)
                      +  .||.|++||.--++.+.........       +.+..+...++-+...++.+ +...+|+++|.+..+- ...++  
T Consensus       801 S--cD~giHlWDPFigr~Laq~~dapk~-------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kVc  870 (1034)
T KOG4190|consen  801 S--CDGGIHLWDPFIGRLLAQMEDAPKE-------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCELKVC  870 (1034)
T ss_pred             e--ccCcceeecccccchhHhhhcCccc-------CCCceeEecccCcchheeeeccchhhheeeecccccc-eeeEEec
Confidence            5  5788999998877776544433221       11222222223344455554 6788999999997552 33333  


Q ss_pred             ---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE-EEcC
Q 019405          256 ---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF-WDIK  331 (341)
Q Consensus       256 ---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i-wd~~  331 (341)
                         +.+.-+++++..+.|++++++-..|.|.+.|.++|+.+..++.- +-....++- |..+.|+....|.++.+ |..-
T Consensus       871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqlaa-psdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLAA-PSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhcC-chhHHHHhhcccceeEeeehhc
Confidence               23456889999999999999999999999999999998877654 333444432 55566777777777777 7655


Q ss_pred             CCce
Q 019405          332 TRQL  335 (341)
Q Consensus       332 ~~~~  335 (341)
                      +|..
T Consensus       949 dgim  952 (1034)
T KOG4190|consen  949 DGIM  952 (1034)
T ss_pred             CCee
Confidence            5543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=1.4e-09  Score=94.36  Aligned_cols=190  Identities=12%  Similarity=0.167  Sum_probs=138.0

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCc-eeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE-KIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~-~~~~~~~  202 (341)
                      +-++........+|++...      .++.|...-..|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++.....
T Consensus        83 ~wiVsts~qkaiiwnlA~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~  156 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS  156 (1081)
T ss_pred             eeEEecCcchhhhhhhhcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence            4555556677788987643      4557777777788999999999854 678999999999999998743 2333222


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-CceEEEEeCCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGD  281 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~  281 (341)
                      -.         .....+.|  +.....+++.+..+.|++||.+.+..|+..+++|...|..+.|..- ...+.+.+.|++
T Consensus       157 w~---------s~asqVkw--nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  157 WR---------SAASQVKW--NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT  225 (1081)
T ss_pred             cc---------ccCceeee--cccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence            21         33566788  4444445555677789999999999899999999989999988652 246778889999


Q ss_pred             EEEEECCC-------------------------------------------------------CeEEeEEeccccCceeE
Q 019405          282 LASVDIRT-------------------------------------------------------GKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       282 i~iwd~~~-------------------------------------------------------~~~~~~~~~~~~~~i~~  306 (341)
                      |+.||...                                                       .++++.|.+| .+.|..
T Consensus       226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH-~D~V~e  304 (1081)
T KOG0309|consen  226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH-DDVVLE  304 (1081)
T ss_pred             eeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc-chHHHH
Confidence            99998542                                                       1345566676 666665


Q ss_pred             EEecCCC--------C--EEEEEeCCCcEEEEEcCC
Q 019405          307 IARHPTL--------P--IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       307 ~~~~~~~--------~--~l~s~~~dg~v~iwd~~~  332 (341)
                      ..|-..+        +  .|+|=|.|..+++|-+.+
T Consensus       305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            5554322        1  699999999999998864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.09  E-value=2.2e-07  Score=77.14  Aligned_cols=146  Identities=15%  Similarity=0.125  Sum_probs=109.4

Q ss_pred             eecCCceEEEEecCCCCEEEEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405          159 VCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (341)
Q Consensus       159 ~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  237 (341)
                      +.+.+.|.-..+..+++-++.|..|| .+-+||.++++........          +.|.++..  +++|++++.+....
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~v--s~dGK~~vvaNdr~  423 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKV--SPDGKKVVVANDRF  423 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEE--cCCCcEEEEEcCce
Confidence            34455666667777777889999998 8999999988754433322          44888998  99999999999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC----CEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .|.+.|+.+++. ...-+...+-|+.+.|||+++++|-+.-+|    .|+++|+..++....-. . .+.=.+-+|.|++
T Consensus       424 el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~-ta~DfsPaFD~d~  500 (668)
T COG4946         424 ELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P-TAYDFSPAFDPDG  500 (668)
T ss_pred             EEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C-cccccCcccCCCC
Confidence            999999999874 333344556799999999999999776554    59999999877654332 2 3344567899999


Q ss_pred             CEEEEE
Q 019405          314 PIIASC  319 (341)
Q Consensus       314 ~~l~s~  319 (341)
                      ++|.--
T Consensus       501 ryLYfL  506 (668)
T COG4946         501 RYLYFL  506 (668)
T ss_pred             cEEEEE
Confidence            976544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.08  E-value=3.1e-09  Score=80.96  Aligned_cols=74  Identities=22%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             eeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCC
Q 019405          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       215 ~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      .|.+++-+|. ...++++|+.||.+-+||.+....|+..+..|+.+++.+-|+| ++..|++++.||.+..||..+
T Consensus       181 ~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3778887533 3457888999999999999998777888889999999999999 558899999999999999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=9.3e-08  Score=83.03  Aligned_cols=134  Identities=15%  Similarity=0.084  Sum_probs=86.3

Q ss_pred             eEEEEecCCCCEEEEee-CCCe--EEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---C
Q 019405          165 IAFSKVDISEKFSLFGG-KGVE--VNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H  237 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~-~d~~--v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~  237 (341)
                      ....+|+|||+.|+..+ .+|.  |.++++.. +.....+....         ..+....|  +|+|++|+....+   .
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~---------~~~~~p~w--SPDG~~Laf~~~~~g~~  351 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY---------RNSSCPAW--SPDGKKIAFCSVIKGVR  351 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC---------CCccceeE--CCCCCEEEEEEcCCCCc
Confidence            45679999999888665 4554  44445432 22222222211         23556788  8999998876543   4


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .|.+||+.+++  ...+......+....|+|+|+.|+....   ...|+++|+..++...... . .+.+...+|+|-.
T Consensus       352 ~I~v~dl~~g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~-~g~~~~p~Ws~~~  426 (428)
T PRK01029        352 QICVYDLATGR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-G-SGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C-CCcccCceecCCC
Confidence            69999998765  3444433345678999999988775433   3568999998776544443 2 4567778888754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=3.8e-09  Score=88.95  Aligned_cols=273  Identities=10%  Similarity=0.061  Sum_probs=171.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccC--ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ..++++++|.++|+|.+..+..+  .-....+|..|..++..+.|-.+..    +++  +.||-|.+||.--++.+..+.
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr----~i~--ScD~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR----SIA--SCDGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc----eee--eccCcceeecccccchhHhhh
Confidence            45788999999999999887333  2235567888999999998877665    344  447999999998887766543


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---C-CceEEE
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---S-GTIAFS  168 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~---~-~~i~~~  168 (341)
                      ..   ......+.+.|+.-....-        .++.++...+++++|.+...        -+..|.+..   . .-+.++
T Consensus       822 da---pk~~a~~~ikcl~nv~~~i--------liAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  822 DA---PKEGAGGNIKCLENVDRHI--------LIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             cC---cccCCCceeEecccCcchh--------eeeeccchhhheeeeccccc--------ceeeEEeccCCCCchheeEE
Confidence            21   1111223343433322221        33344777889998865433        334444432   2 457899


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE-EEcCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQ  247 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~  247 (341)
                      ++.+.|+.++.+-.+|.|.+.|.++|+.+..........+         .++   .|....++....|.++.+ |-...+
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdll---------qla---apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLL---------QLA---APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhh---------hhc---CchhHHHHhhcccceeEeeehhcCC
Confidence            9999999999999999999999999998876665443222         222   356667788788888888 876554


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC-C---CeEEeEEec-cccCceeEEEecCCCCEEEEEeCC
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-T---GKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~---~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      .. ..+.+....+...+  -.-|.-|++....+.+.+|--. .   ...+.+++. ...+..++++--|-..-++.|...
T Consensus       951 im-h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen  951 IM-HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred             ee-eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence            32 22222221222111  1234556666666667776311 0   011111211 114567888888877777888888


Q ss_pred             CcEEE
Q 019405          323 SYLRF  327 (341)
Q Consensus       323 g~v~i  327 (341)
                      |.|.+
T Consensus      1028 G~IaL 1032 (1034)
T KOG4190|consen 1028 GAIAL 1032 (1034)
T ss_pred             Cceee
Confidence            88875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.08  E-value=1.5e-06  Score=72.33  Aligned_cols=148  Identities=19%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCcee
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPV  251 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~  251 (341)
                      +|.+++..+.. ...+.+...+-.+..           .++..|.-..+  ..+++-++.|..|| .+-|+|..+++  +
T Consensus       331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv-----------~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e--~  394 (668)
T COG4946         331 NGDYIALVSRG-KAFIMRPWDGYSIQV-----------GKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGE--V  394 (668)
T ss_pred             CCcEEEEEecC-cEEEECCCCCeeEEc-----------CCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCce--E
Confidence            57888877764 677766554433322           12344777777  55666888999998 89999999865  5


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC----cEEE
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRF  327 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~v~i  327 (341)
                      +.+...-+.|.++..+|+|+.++++.....|.+.|+.++.....-+.. .+-|+...|||+++++|-+--+|    .|++
T Consensus       395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence            666667788999999999999999999999999999999775544444 78899999999999999876655    7899


Q ss_pred             EEcCCCceee
Q 019405          328 WDIKTRQLLS  337 (341)
Q Consensus       328 wd~~~~~~~~  337 (341)
                      +|+..++...
T Consensus       474 ydm~~~Kiy~  483 (668)
T COG4946         474 YDMDGGKIYD  483 (668)
T ss_pred             EecCCCeEEE
Confidence            9999877543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=5.4e-07  Score=70.23  Aligned_cols=217  Identities=19%  Similarity=0.120  Sum_probs=120.4

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      =.-++||+|..    +||.+...|+|+++|+.. ..+..+....... ..-...+.++.+.+....  ......|++-..
T Consensus        46 WRkl~WSpD~t----lLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s--~~ws~ELlvi~Y  117 (282)
T PF15492_consen   46 WRKLAWSPDCT----LLAYAESTGTIRVFDLMG-SELFVIPPAMSFP-GDLSDAIAGLIFLEYKKS--AQWSYELLVINY  117 (282)
T ss_pred             heEEEECCCCc----EEEEEcCCCeEEEEeccc-ceeEEcCcccccC-CccccceeeeEeeccccc--cccceeEEEEec
Confidence            35678886666    899999999999999964 4444444321110 012366777777666532  223347777888


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                      .|.++-+-+...... .........+.......|.++.++|..++|++||....      +.+.  .....         
T Consensus       118 ~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--s~a~~---------  179 (282)
T PF15492_consen  118 RGQLRSYLVSVGTNQ-GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--SKASS---------  179 (282)
T ss_pred             cceeeeEEEEcccCC-cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--ccccc---------
Confidence            888888877432211 01111112222233567999999999888888775422      0000  00000         


Q ss_pred             CCeeeeEEEEEe-cCCCCEEEEEeCCCe------EEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          212 TPTWFTSAAFLS-IDDHRKFVAGTNDHQ------VRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       212 ~~~~v~~~~~~~-~~~~~~l~~~~~d~~------i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                        ..+++-.... .|... .++...|+.      -.+|.+-+.+  .... ......|..|..||||..||+...+|.|.
T Consensus       180 --~GLtaWRiL~~~Pyyk-~v~~~~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ls  254 (282)
T PF15492_consen  180 --CGLTAWRILSDSPYYK-QVTSSEDDITASSKRRGLLRIPSFK--FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLS  254 (282)
T ss_pred             --cCceEEEEcCCCCcEE-EccccCccccccccccceeecccee--eeeccccCCCceEEEEECCCCCEEEEEEcCCeEE
Confidence              0011111110 01111 111221211      1222222211  1111 12356799999999999999999999999


Q ss_pred             EEECCCCeEEeEEecc
Q 019405          284 SVDIRTGKLLGCFIGK  299 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~  299 (341)
                      +|++.+-++..++...
T Consensus       255 LW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  255 LWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEecCcchhhcccchh
Confidence            9999988777776543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=1e-07  Score=83.63  Aligned_cols=110  Identities=25%  Similarity=0.268  Sum_probs=87.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE---------EeCCCCEEEEECCCCeE--EeEE
Q 019405          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI---------GNGSGDLASVDIRTGKL--LGCF  296 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------g~~dg~i~iwd~~~~~~--~~~~  296 (341)
                      .+++.|...|+|.++|+.++.. ...+..|...|.++.|-...+++-.         |+.-+.+.+-|+++|..  .+.+
T Consensus       438 pLvAvGT~sGTV~vvdvst~~v-~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l  516 (1062)
T KOG1912|consen  438 PLVAVGTNSGTVDVVDVSTNAV-AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL  516 (1062)
T ss_pred             eeEEeecCCceEEEEEecchhh-hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence            3688999999999999998654 6777889999999999766554432         22335588889999854  4444


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++..+.+|..+..+..+++|+..-.|.-+.+||+++..+++.
T Consensus       517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~  558 (1062)
T KOG1912|consen  517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL  558 (1062)
T ss_pred             CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHH
Confidence            565678999999999999999999999999999988766543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.02  E-value=5.4e-07  Score=84.85  Aligned_cols=212  Identities=13%  Similarity=0.082  Sum_probs=137.5

Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      ..+.++++.++....        .++.+..+|.+.+...+...     ....+.+-. .-...|.+++|+||+..++..+
T Consensus        74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~-----~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDP-----DEDEIEIVG-SVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCC-----CCceeEEEE-EEcCcEEEEEECCCcCEEEEEe
Confidence            457899999998887        89999999999988433211     122333322 1246899999999999999999


Q ss_pred             CCCeEEEEECCC-----------------------CceeeecCCCCCCc---------------cCccCCeeeeEEEEEe
Q 019405          182 KGVEVNVWDLDK-----------------------CEKIWTAKPPPKNS---------------LGIFTPTWFTSAAFLS  223 (341)
Q Consensus       182 ~d~~v~i~d~~~-----------------------~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~~~  223 (341)
                      .+++|.+.+-.=                       |+....|++.....               ..+.....-..++|  
T Consensus       140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--  217 (928)
T PF04762_consen  140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--  217 (928)
T ss_pred             CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--
Confidence            998887764210                       11112222211111               00002224567889  


Q ss_pred             cCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEE
Q 019405          224 IDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL  293 (341)
Q Consensus       224 ~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~  293 (341)
                      ..||.++|+.+.      -+.+|+|+.. +.  +..... -.+--.+++|.|.|.+||+.-.   .-.|.+|. ++|..-
T Consensus       218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh  293 (928)
T PF04762_consen  218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH  293 (928)
T ss_pred             CCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence            899999998775      2579999866 33  222211 1122346899999999988764   23466665 455444


Q ss_pred             eEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          294 GCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       294 ~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ..|.-   +....|..+.|++++..||..-.|. |.+|-..+..
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            44432   2256899999999999999987665 9999887754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.01  E-value=4e-09  Score=80.43  Aligned_cols=150  Identities=15%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceee-ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-----CCCeEEEEE
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYD  243 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----~d~~i~iwd  243 (341)
                      .+-.++.+++++.||.+.+++.+.-..+. .......   .      -.+.++  -..++++.++.     .-+..+.|+
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~---~------~as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~  165 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS---G------SASRKI--CRHGNSILSGGCGNWNAQDNFYANT  165 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHHHhhhhhcccccc---c------ccccce--eecccEEecCCcceEeeccceeeec
Confidence            33356789999999999999987621111 1111100   0      111122  11233333321     123456677


Q ss_pred             cCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEE-eEEeccccCceeEEEecCC-CCEEEEEe
Q 019405          244 TSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPT-LPIIASCG  320 (341)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~s~~  320 (341)
                      ++..+..+...+ ....|++++-+|.. +.+++|+.||.+.+||.++.... ..++.| +.+|+.+-|+|. +..|++++
T Consensus       166 ~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  166 LDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             cccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEec
Confidence            665332111112 22348999999955 56778889999999999987543 344566 999999999995 55899999


Q ss_pred             CCCcEEEEEcCC
Q 019405          321 LDSYLRFWDIKT  332 (341)
Q Consensus       321 ~dg~v~iwd~~~  332 (341)
                      .||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=1.9e-09  Score=59.34  Aligned_cols=39  Identities=44%  Similarity=0.624  Sum_probs=36.8

Q ss_pred             CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ++++.++.+| .+.|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4678899998 99999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.00  E-value=3.4e-06  Score=67.96  Aligned_cols=210  Identities=19%  Similarity=0.126  Sum_probs=131.2

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      +.++++--..+.|..|+..+++.. .+..          ....++.+...++        .++.+...+... +++... 
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~-~~~~----------~~~~G~~~~~~~g--------~l~v~~~~~~~~-~d~~~g-   70 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVE-VIDL----------PGPNGMAFDRPDG--------RLYVADSGGIAV-VDPDTG-   70 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEE-EEES----------SSEEEEEEECTTS--------EEEEEETTCEEE-EETTTT-
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEE-EEec----------CCCceEEEEccCC--------EEEEEEcCceEE-EecCCC-
Confidence            446777777899999999776442 2332          2255555553334        666666555443 355332 


Q ss_pred             cccccCCceEE-EEEee----cCCceEEEEecCCCCEEEEeeCC--------CeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          145 VSAESSCSTVK-SWNVC----ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       145 ~~~~~~~~~v~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                              .+. +....    .......++++++|++.++....        |.|..++.. ++........        
T Consensus        71 --------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~--------  133 (246)
T PF08450_consen   71 --------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL--------  133 (246)
T ss_dssp             --------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE--------
T ss_pred             --------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc--------
Confidence                    222 22221    23457789999999977765443        567777776 4433322221        


Q ss_pred             CCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCc---eeEEE-EecCC--CeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          212 TPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR---PVMSF-DFRET--PIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~---~~~~~-~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                        ...+.++|  +|+++.|+ +-+..+.|..+++.....   ....+ .....  ..-.+++..+|++.++....+.|.+
T Consensus       134 --~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  134 --GFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV  209 (246)
T ss_dssp             --SSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred             --ccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence              23678999  88998765 566788899999864322   11222 22222  3678999999988888888999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEec-CCCCEEEE
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIAS  318 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s  318 (341)
                      +|.+ |+.+..+... ...+++++|. ++...|..
T Consensus       210 ~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  210 FDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEE
T ss_pred             ECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEE
Confidence            9987 9988888876 5689999994 56554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=6.2e-07  Score=84.46  Aligned_cols=271  Identities=13%  Similarity=0.087  Sum_probs=155.6

Q ss_pred             eeeecCCCCeEEEEEecC-ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      ++.+..+|.|-++..... ...   .+...+.-+..+.+++||||..    +|+..+.+++|.+-.. +.+.+.+...+.
T Consensus        90 l~~~~~~Gdi~~~~~~~~~~~~---~~E~VG~vd~GI~a~~WSPD~E----lla~vT~~~~l~~mt~-~fd~i~E~~l~~  161 (928)
T PF04762_consen   90 LCIALASGDIILVREDPDPDED---EIEIVGSVDSGILAASWSPDEE----LLALVTGEGNLLLMTR-DFDPISEVPLDS  161 (928)
T ss_pred             EEEEECCceEEEEEccCCCCCc---eeEEEEEEcCcEEEEEECCCcC----EEEEEeCCCEEEEEec-cceEEEEeecCc
Confidence            455567777777743322 112   2333445677899999888887    8888998999988853 455555554432


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEccccee--EEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA--SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~--~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      ..   ......+.+-|=.....         +-|+.....  ..-+...    ...+.+.+. ++    ..-..++|-.|
T Consensus       162 ~~---~~~~~~VsVGWGkKeTQ---------F~Gs~gK~aa~~~~~p~~----~~~d~~~~s-~d----d~~~~ISWRGD  220 (928)
T PF04762_consen  162 DD---FGESKHVSVGWGKKETQ---------FHGSAGKAAARQLRDPTV----PKVDEGKLS-WD----DGRVRISWRGD  220 (928)
T ss_pred             cc---cCCCceeeeccCcccCc---------cCcchhhhhhhhccCCCC----CccccCccc-cC----CCceEEEECCC
Confidence            11   11233333333222210         111100000  0000000    000111222 22    23457889999


Q ss_pred             CCEEEEeeC---C---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---CCeEEEEEc
Q 019405          174 EKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDT  244 (341)
Q Consensus       174 ~~~l~~~~~---d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~  244 (341)
                      |+++|+.+.   .   ..+++|+-+ |+.....+...         +--.+++|  .|.|+++|+.-.   ...|.+|.-
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---------gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFfEr  288 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---------GLEGALSW--RPSGNLIASSQRLPDRHDVVFFER  288 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---------CccCCccC--CCCCCEEEEEEEcCCCcEEEEEec
Confidence            999998764   2   468999864 55444333211         22456789  899999998764   356777775


Q ss_pred             CCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEEE
Q 019405          245 SAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASC  319 (341)
Q Consensus       245 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s~  319 (341)
                      +..+.--..+.  .....|..+.|++++..||.-..|. |.+|-..+...  .+.+.......+..+.|+|... .|...
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~  367 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL  367 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence            54322122222  2456799999999999999977554 99999887653  3344433234566699999765 56666


Q ss_pred             eCCCcEEEEE
Q 019405          320 GLDSYLRFWD  329 (341)
Q Consensus       320 ~~dg~v~iwd  329 (341)
                      +.+|.+..++
T Consensus       368 t~~g~~~~~~  377 (928)
T PF04762_consen  368 TSNGQYEIYD  377 (928)
T ss_pred             ecCCcEEEEE
Confidence            6667665544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=3.2e-07  Score=80.61  Aligned_cols=288  Identities=15%  Similarity=0.125  Sum_probs=174.0

Q ss_pred             eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCC--------CceEEEEccCCeEEEeeCCCCcchh
Q 019405           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--------DPLLAVARKNGLTDILNPLNGDLRV   89 (341)
Q Consensus        18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~--------~~~l~~~~~dg~i~iw~~~~~~~~~   89 (341)
                      ++.+.-..|-+++...-     +.++.+..|+..|+.+.|++...|.        ..+||++...|.|.+||...+..+.
T Consensus        29 iAygshslV~VVDs~s~-----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~  103 (1062)
T KOG1912|consen   29 IAYGSHSLVSVVDSRSL-----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN  103 (1062)
T ss_pred             EEEecCceEEEEehhhh-----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence            34444444466666555     5677787899999999999865443        2368889999999999998887777


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-CceEEE
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-GTIAFS  168 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~i~~~  168 (341)
                      .++.        +.+++..++|......    ....|++-.....+.+|+...+.          ++|...-. ....|+
T Consensus       104 ~l~~--------~~~~~qdl~W~~~rd~----Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen  104 WLSH--------SNDSVQDLCWVPARDD----SRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEILSCF  161 (1062)
T ss_pred             hhcC--------CCcchhheeeeeccCc----chheeEEecCCcEEEEEEccCCc----------eeeccccCCcceeee
Confidence            6665        4577777888765542    11267777888899999865443          56664433 345568


Q ss_pred             EecC-CCCEEEEeeCCCeEEEEECCC-------CceeeecCCCCC-----------Cc-----cCccCCeeeeEEEEEec
Q 019405          169 KVDI-SEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------NS-----LGIFTPTWFTSAAFLSI  224 (341)
Q Consensus       169 ~~~~-~~~~l~~~~~d~~v~i~d~~~-------~~~~~~~~~~~~-----------~~-----~~~~~~~~v~~~~~~~~  224 (341)
                      .++| |.+.+..-+..|.+.+-+.-.       ++..+.-..+..           ..     .....+......+|  +
T Consensus       162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf--~  239 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF--S  239 (1062)
T ss_pred             eeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc--C
Confidence            8888 556666666667776665421       121111111100           00     00000111223445  5


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC--ceEEEEeCCCCEEEEECCC-------------
Q 019405          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRT-------------  289 (341)
Q Consensus       225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~-------------  289 (341)
                      |.-+.++.....+.+.++|++-. +++....-..+.+..+.+-|++  ..|++.-.||.+.+|-.+.             
T Consensus       240 p~~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~  318 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLS  318 (1062)
T ss_pred             hhhhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhc
Confidence            55554555556788999999864 3466666566667778887765  5789999999999996543             


Q ss_pred             ---CeEEeEEeccccCceeEEEecCC-CCEEEEEeCCCcEEEEEcCCCce
Q 019405          290 ---GKLLGCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       290 ---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                         ++....+..-.+-.+...+..|. ...++.--.+|.+.+|.+.+|+.
T Consensus       319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence               11122221111222333444454 23344344677888999887653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.9e-06  Score=73.01  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=146.9

Q ss_pred             CCceeEEEeccCCCCCceEEEEcc-----------CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      ..+..+.|||...    ||+|=+.           ...++|||+.+|...+.+....      .....--+-.|+.++  
T Consensus       250 p~Vq~idfSP~Ek----YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------~~~~~WP~frWS~Dd--  317 (698)
T KOG2314|consen  250 PGVQFIDFSPNEK----YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK------SPYLKWPIFRWSHDD--  317 (698)
T ss_pred             CCceeeecCCccc----eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC------CCccccceEEeccCC--
Confidence            4566777777666    8888442           2569999999999988877631      112233344455555  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeC-----CCeEEEEEC
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGK-----GVEVNVWDL  191 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~  191 (341)
                            .+++.-....+.|+....           ..+.+...  -..|....|+|.++.||.=..     -..+.+..+
T Consensus       318 ------Ky~Arm~~~sisIyEtps-----------f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev  380 (698)
T KOG2314|consen  318 ------KYFARMTGNSISIYETPS-----------FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV  380 (698)
T ss_pred             ------ceeEEeccceEEEEecCc-----------eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence                  555555557777776432           22222211  245778899999888875322     123555556


Q ss_pred             CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe----------CCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----------NDHQVRLYDTSAQRRPVMSFDFRETPI  261 (341)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~v  261 (341)
                      .+++.++......           |..+..+-..+|.+|+.--          .--.+.|+.++....|+..... ...|
T Consensus       381 Ps~~~iRt~nlfn-----------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~v  448 (698)
T KOG2314|consen  381 PSKREIRTKNLFN-----------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESV  448 (698)
T ss_pred             Cccceeeecccee-----------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-chhe
Confidence            5555554433221           3222222256677766521          1124667777766666666553 3578


Q ss_pred             EEEEEcCCCceEEEEeC---CCCEEEEECCC-C---eEEeEEeccccCceeEEEecCCCCEEEEE---eCCCcEEEEEcC
Q 019405          262 KAVAEEPDSFNIYIGNG---SGDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIK  331 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~---dg~i~iwd~~~-~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~---~~dg~v~iwd~~  331 (341)
                      ...+|.|.|..+++-+.   ..++.+|.+++ .   +++..+.   ....+.+.|+|.|++++.+   |..|.+.++|+.
T Consensus       449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            89999999977765443   35688888773 2   3344443   3467889999999987765   457889999987


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      -
T Consensus       526 ~  526 (698)
T KOG2314|consen  526 Y  526 (698)
T ss_pred             h
Confidence            3

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=6.5e-09  Score=82.42  Aligned_cols=143  Identities=17%  Similarity=0.132  Sum_probs=104.9

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ...|.++.|...++++..|..+|.|..+|++.+.     .+.......+.|+..|+++... ..++.+|++.+.+|+|++
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rlyh~Ssvtslq~L-q~s~q~LmaS~M~gkikL  325 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRLYHDSSVTSLQIL-QFSQQKLMASDMTGKIKL  325 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecc-----cCCCcceEEEEcCcchhhhhhh-ccccceEeeccCcCceeE
Confidence            4678888998889999999999999999998652     1112222234466778888764 447788999999999999


Q ss_pred             EEcCCCCc--eeEEEEecCCCeEEE--EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc---cCceeEEEec
Q 019405          242 YDTSAQRR--PVMSFDFRETPIKAV--AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC---SGSIRSIARH  310 (341)
Q Consensus       242 wd~~~~~~--~~~~~~~~~~~v~~~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~  310 (341)
                      ||++.-++  -+.++.+|-..-.-+  -..+....+++++.|...+||.++.+.++.+++...   +..+.+++|.
T Consensus       326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            99986442  377788885543333  335666788899999999999999999998887541   2245566664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=1.2e-06  Score=70.16  Aligned_cols=192  Identities=18%  Similarity=0.217  Sum_probs=114.4

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++++++.++.|..||..+|+.+..+....         .+.... ....+        .++.+..++.+..++...++  
T Consensus        38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---------~~~~~~-~~~~~--------~v~v~~~~~~l~~~d~~tG~--   97 (238)
T PF13360_consen   38 RVYVASGDGNLYALDAKTGKVLWRFDLPG---------PISGAP-VVDGG--------RVYVGTSDGSLYALDAKTGK--   97 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSEEEEEEECSS---------CGGSGE-EEETT--------EEEEEETTSEEEEEETTTSC--
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEeeccc---------ccccee-eeccc--------ccccccceeeeEecccCCcc--
Confidence            58888899999999999999887776521         111111 11122        66666677777777754333  


Q ss_pred             cccCCceEEEEEe-ecC----CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC-ccC-CeeeeEE
Q 019405          147 AESSCSTVKSWNV-CAS----GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IFT-PTWFTSA  219 (341)
Q Consensus       147 ~~~~~~~v~~~~~-~~~----~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~  219 (341)
                              .+|.. ...    ..........+++.++.+..++.|..+|+++|+.++........... ... ......+
T Consensus        98 --------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~  169 (238)
T PF13360_consen   98 --------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP  169 (238)
T ss_dssp             --------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred             --------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence                    24552 211    11112222224778888888999999999999998887663321000 000 0001222


Q ss_pred             EEEecCCCCEEEEEeCCCe-EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405          220 AFLSIDDHRKFVAGTNDHQ-VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  295 (341)
                      .+   .++ .+..+..++. +.+ |+.+++. +-..  ....+..+ ..+.+..|++++.++.|..||+++|+.+..
T Consensus       170 ~~---~~~-~v~~~~~~g~~~~~-d~~tg~~-~w~~--~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  170 VI---SDG-RVYVSSGDGRVVAV-DLATGEK-LWSK--PISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EC---CTT-EEEEECCTSSEEEE-ETTTTEE-EEEE--CSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EE---ECC-EEEEEcCCCeEEEE-ECCCCCE-EEEe--cCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            22   234 6777777775 555 9998764 3222  22223331 345667888888999999999999998753

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=9.3e-08  Score=83.20  Aligned_cols=237  Identities=13%  Similarity=0.093  Sum_probs=152.1

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCC-------CCCCCCCceeeEeeeecccccccccc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS-------GAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ...|++|.....    +++.|+.||.++|..+.+...-...++....       ...+|...+..+.|.....       
T Consensus        16 kL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-------   84 (1189)
T KOG2041|consen   16 KLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-------   84 (1189)
T ss_pred             eEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------
Confidence            345666665555    8999999999999988754332222221100       1123556666666655555       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--cC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AK  201 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~  201 (341)
                       .|.+...+|.|.+|-+-.+.-.       -...+......|.+++|+.+|..++....||.|.+=.++. ..++.  ++
T Consensus        85 -KLTtSDt~GlIiVWmlykgsW~-------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLk  155 (1189)
T KOG2041|consen   85 -KLTTSDTSGLIIVWMLYKGSWC-------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELK  155 (1189)
T ss_pred             -cccccCCCceEEEEeeecccHH-------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcc
Confidence             7888888899999876433210       0011223456788999999999999999999998877653 33321  22


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe----cCCCeEEEEEc----
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF----RETPIKAVAEE----  267 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~----~~~~v~~~~~~----  267 (341)
                      +.           ....+.|  ++|...++.+-.+|.+.+||.+..-      .......+    ....|..+.|.    
T Consensus       156 g~-----------~l~hv~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  156 GQ-----------LLAHVLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             hh-----------eccceee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            21           1345678  8899998888899999999976421      00111111    11235556653    


Q ss_pred             ----CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          268 ----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       268 ----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                          |+...|+++...|.+.|-.-.+......+..  .-.|..+.|+++|.+|+.++.|
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCc
Confidence                5778899999999988875544433333332  3578899999999999998855

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.90  E-value=8.6e-06  Score=78.37  Aligned_cols=224  Identities=13%  Similarity=0.077  Sum_probs=125.0

Q ss_pred             eeEEEeccCCCCCceEEEE-ccCCeEEEeeCCCCcchheeeccCCCC--CCCC-------CCceeeEeeeeccccccccc
Q 019405           53 CVLAASIDDSQNDPLLAVA-RKNGLTDILNPLNGDLRVAISNAGDSG--AQPE-------DDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..+++..++.    .|+++ ..++.|+++|+.++. +.++.......  ....       ......+++-+..+.     
T Consensus       627 ~GIavd~~gn----~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-----  696 (1057)
T PLN02919        627 QGLAYNAKKN----LLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-----  696 (1057)
T ss_pred             cEEEEeCCCC----EEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-----
Confidence            3445554433    45554 456789999987654 33332210000  0000       012234444332331     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEE-----eecCCceEEEEecCCCCEE-EEeeCCCeEEEEECCCCce
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-----~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~  196 (341)
                        .+++...++.+.+|+...........++.....+     ...-.....++++|+++.| ++-+.++.|++||+.++..
T Consensus       697 --LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        697 --VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             --EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence              6677777889999887433211100111000000     0001234578999998844 4556678999999987653


Q ss_pred             eeecCCCC---CCccCc---------cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-------
Q 019405          197 IWTAKPPP---KNSLGI---------FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------  257 (341)
Q Consensus       197 ~~~~~~~~---~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  257 (341)
                      ........   ......         ..-.....+++  +++++++++-..++.|++||..++.  +..+.+.       
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav--d~dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~d  850 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC--AKDGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKD  850 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeE--eCCCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCC
Confidence            22111000   000000         00012357788  7889988888899999999998754  3333221       


Q ss_pred             -------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          258 -------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       258 -------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                             -.....++++++|+++++-+.++.|++||+.+++.
T Consensus       851 G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        851 GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                   12467899999999888888899999999988764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.9e-08  Score=81.57  Aligned_cols=281  Identities=12%  Similarity=0.040  Sum_probs=170.4

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeecc
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.++++-||.+|.|.-... .|+ +.+..+..|...+..++.+.++-    ++++.+. |..++++|+++-.....++..
T Consensus        22 fiiqASlDGh~KFWkKs~i-sGv-EfVKhFraHL~~I~sl~~S~dg~----L~~Sv~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   22 FIIQASLDGHKKFWKKSRI-SGV-EFVKHFRAHLGVILSLAVSYDGW----LFRSVEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             eEEeeecchhhhhcCCCCc-cce-eehhhhHHHHHHHHhhhccccce----eEeeccCcccceeEEEeeccchhhhcccc
Confidence            3678899999999986663 132 34556667778887777777766    7888676 999999999887665554432


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                      ..+      +   ...|....+..   ....-+....++.+.++|-..       ...++..+.--|..+|.++.+.+.+
T Consensus        96 ~lP------g---~a~wv~skGd~---~s~IAVs~~~sg~i~VvD~~~-------d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   96 DLP------G---FAEWVTSKGDK---ISLIAVSLFKSGKIFVVDGFG-------DFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             cCC------C---ceEEecCCCCe---eeeEEeecccCCCcEEECCcC-------CcCccceecccccCceEEEEeeccc
Confidence            111      1   11222111100   000223334457777776321       1124555666677899999999999


Q ss_pred             CEEEEeeCCCeEEEEECCC------CceeeecCCCCCCccCc-cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          175 KFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ..+++....|.|.-|..+.      .+..+.++.. ...+.. .......++.|  +|++..+.+-+.|..|++++.+++
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Ef--sp~g~qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEF--SPDGAQISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             cceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceEE--ccccCcccccCcccEEEEEEeccc
Confidence            9999999999999999873      1111222111 111111 11244678889  899999999999999999999987


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---EEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      +. ++.+..-.   +.-.+-|..          .+.+=++.-++   ..+.+..|....-+.+.|...+++|+-++.=| 
T Consensus       234 kl-vqeiDE~~---t~~~~q~ks----------~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-  298 (558)
T KOG0882|consen  234 KL-VQEIDEVL---TDAQYQPKS----------PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-  298 (558)
T ss_pred             hh-hhhhhccc---hhhhhcccc----------ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence            64 55443211   111111111          11111111111   11223333234556788999999999887665 


Q ss_pred             EEEEEcCCCceeeee
Q 019405          325 LRFWDIKTRQLLSAV  339 (341)
Q Consensus       325 v~iwd~~~~~~~~~~  339 (341)
                      |++.++.++.+++.+
T Consensus       299 ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  299 IKVINLDTNTVVRIL  313 (558)
T ss_pred             EEEEEeecCeEEEEe
Confidence            899999998877654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=2.9e-07  Score=72.35  Aligned_cols=121  Identities=12%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             ceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce------eeecCCCCCC-ccCccCCeeeeEEEEEecCCCCEEEEEeC
Q 019405          164 TIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (341)
Q Consensus       164 ~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  235 (341)
                      .|++..|+|.. +.+...+..|.|++-|+++...      +......... .+-......|..+.|  +++|+++++-..
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kF--s~ngryIlsRdy  300 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKF--SDNGRYILSRDY  300 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEE--cCCCcEEEEecc
Confidence            36777888854 5666677889999999985322      1111111100 000111245788889  889999888654


Q ss_pred             CCeEEEEEcCCCCceeEEEEecC------------CCeE---EEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRE------------TPIK---AVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~------------~~v~---~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                       -+|++||.+..+.|+.++.-|.            ..|.   .+.|+.+.+.+++|+..+..-++-.
T Consensus       301 -ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         301 -LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             -ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence             5899999998888888876552            2333   4788888899999998888777753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.85  E-value=1.2e-05  Score=71.33  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=97.7

Q ss_pred             EEecCCCCEEEEeeCCC------------------eEEEEECCCCceeeecCCCCCCccC--ccCCeeeeEEEEEecCCC
Q 019405          168 SKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKIWTAKPPPKNSLG--IFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~------------------~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  227 (341)
                      .++++.+..++.++.++                  .|.-+|.++++..+.++........  ...+..+..+.   .-++
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g  298 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK---PKDG  298 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc---ccCC
Confidence            34455566777776554                  7999999999999987643221110  00000011111   0123


Q ss_pred             C---EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE------------------eCCCCEEEEE
Q 019405          228 R---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG------------------NGSGDLASVD  286 (341)
Q Consensus       228 ~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g------------------~~dg~i~iwd  286 (341)
                      .   .++.++.+|.+..+|.++++. +-.....   ...++.+|  ..++.+                  ..+|.+.-.|
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            2   577888999999999999875 4333211   11233444  233332                  2467899999


Q ss_pred             CCCCeEEeEEeccc-c------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          287 IRTGKLLGCFIGKC-S------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       287 ~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+|+.+.+..... .      .+...-...-.+..|+.++.||.|+.+|.++|+.+.+.
T Consensus       373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~  432 (488)
T cd00216         373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF  432 (488)
T ss_pred             CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence            99999887665320 0      11111011124567888889999999999999988764

The alignment model contains an 8-bladed beta-propeller.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.7e-08  Score=81.73  Aligned_cols=198  Identities=14%  Similarity=0.048  Sum_probs=137.4

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      .+++++.||.++.|.-....     .. .+......|-..|.+++.+-++.++.+.+. |..++++|+++-.....++..
T Consensus        22 fiiqASlDGh~KFWkKs~is-----Gv-EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   22 FIIQASLDGHKKFWKKSRIS-----GV-EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             eEEeeecchhhhhcCCCCcc-----ce-eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence            89999999999999743211     01 112222335567888888899999999777 999999999875544333222


Q ss_pred             CCCccCccCCeeeeEEEEEecCCC--CEEEE-EeCCCeEEEEEcCCCCceeE-EEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDH--RKFVA-GTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~-~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      -.       |.   .+.|..++..  ..+++ .-.++.+.++|-....++.. .-..|..+|..+.+++-+..+++....
T Consensus        96 ~l-------Pg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   96 DL-------PG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cC-------CC---ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            10       11   1222212221  13333 44678999999876554333 334589999999999999999999999


Q ss_pred             CCEEEEECCC------CeE---------EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRT------GKL---------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~------~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |.|.-|....      .+.         +..+... .....++.|+|++..+.+-+.|..|++++.++|+.++.+
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            9999998762      111         1122222 567889999999999999999999999999999987754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.6e-07  Score=83.87  Aligned_cols=188  Identities=18%  Similarity=0.190  Sum_probs=126.0

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++.|+....+..+|++...        ..+..++..++ +.-+.  .+++.+.+|...|+|.+-|.++.+.+.++..|.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~--------e~r~~~v~a~~-v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEK--------ETRTTNVSASG-VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             ceeecchhhheeeeecccce--------eeeeeeccCCc-eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            44555444455555554332        33344443322 44444  357889999999999999999999999999876


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeC---------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIY  274 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~  274 (341)
                               +.+..+..    .|++|++++.         |.-|++||++..+. +.-+..+.++ .-+.|+|.- ..++
T Consensus       218 ---------~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  218 ---------GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLA  282 (1118)
T ss_pred             ---------cceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEE
Confidence                     44665554    7889998875         45589999998654 4334434433 457788853 5788


Q ss_pred             EEeCCCCEEEEECCCC-eE-EeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          275 IGNGSGDLASVDIRTG-KL-LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       275 ~g~~dg~i~iwd~~~~-~~-~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+..|...+-|..+. .+ ...+. ......+..+++++++..++.+..+|.|.+|. .+.++...-
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~Fn~  349 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQFNE  349 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec-CCCCCccCC
Confidence            8899999999984321 11 11121 12244599999999999999999999999998 334444433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=7e-06  Score=71.07  Aligned_cols=255  Identities=13%  Similarity=0.109  Sum_probs=135.3

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCC-CCC-CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-QPE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      ..+++++.+|.|.-+|.++|+.+........... +.. ...+.+-... .++        .++.++.+|.+..+|.+.+
T Consensus        70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--------~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGG--------KVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECC--------EEEEEcCCCEEEEEECCCC
Confidence            3688888899999999999988776654211000 000 0000000000 011        4555556666666655433


Q ss_pred             ccc---------------------cccCCceEEEEEeecCCceEEEEe-----------cC--CCCEEEEeeCCCeEEEE
Q 019405          144 KVS---------------------AESSCSTVKSWNVCASGTIAFSKV-----------DI--SEKFSLFGGKGVEVNVW  189 (341)
Q Consensus       144 ~~~---------------------~~~~~~~v~~~~~~~~~~i~~~~~-----------~~--~~~~l~~~~~d~~v~i~  189 (341)
                      +..                     ....++.+..++..++..++....           +|  .+..++.++.++.+..+
T Consensus       141 ~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~  220 (394)
T PRK11138        141 EVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAV  220 (394)
T ss_pred             CCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEE
Confidence            220                     011233344444433333332221           11  12345556667777778


Q ss_pred             ECCCCceeeecCCCCCCc-cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405          190 DLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       190 d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  268 (341)
                      |..+++.++......... ...   .....+...|--.+..++.++.++.+..+|..+++. +-....  .....+..  
T Consensus       221 d~~~G~~~W~~~~~~~~~~~~~---~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~--~~~~~~~~--  292 (394)
T PRK11138        221 LMEQGQLIWQQRISQPTGATEI---DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKREY--GSVNDFAV--  292 (394)
T ss_pred             EccCChhhheeccccCCCccch---hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeecC--CCccCcEE--
Confidence            887777766543221100 000   000000010001245677777899999999998764 322221  11112222  


Q ss_pred             CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+..++.++.+|.+..+|..+|+.+............+...  .+..|+.++.||.|+..|..+|+.+.+.
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            45578888899999999999998765443210111222222  2457788899999999999999987654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.7e-08  Score=55.49  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                      ++..+.+|..+|++++|+|++.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=3.1e-09  Score=94.22  Aligned_cols=221  Identities=17%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .|.++...-+|++|+.+..    +|++|+..|.|+++++.+|.....+.+|.        .+++.+.-.....       
T Consensus      1096 ~frd~~~~fTc~afs~~~~----hL~vG~~~Geik~~nv~sG~~e~s~ncH~--------SavT~vePs~dgs------- 1156 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTN----HLAVGSHAGEIKIFNVSSGSMEESVNCHQ--------SAVTLVEPSVDGS------- 1156 (1516)
T ss_pred             hhhccccceeeEEeecCCc----eEEeeeccceEEEEEccCccccccccccc--------cccccccccCCcc-------
Confidence            4567888899999998887    89999999999999999999888888753        3343332222111       


Q ss_pred             ceeEEEcccc-eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          124 RTLLTCTTKG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g-~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      -.|.+++... ...+|++..       .-+..+.|+     .-.++.|+.....-+.|.......+||+.++..+.++-.
T Consensus      1157 ~~Ltsss~S~PlsaLW~~~s-------~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASS-------TGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred             eeeeeccccCchHHHhcccc-------ccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence            0233333222 445666532       112333333     234677876655555566656799999999887766433


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i  282 (341)
                      .....     ...-++..|  +|+..+++   .||  .+||++..+ .++.|...+.. -.-.|+|.|..++.-+.    
T Consensus      1225 ~~~~~-----~y~~n~a~F--sP~D~LIl---ndG--vLWDvR~~~-aIh~FD~ft~~-~~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1225 DTVTS-----SYSNNLAHF--SPCDTLIL---NDG--VLWDVRIPE-AIHRFDQFTDY-GGGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred             cchhh-----hhhcccccc--CCCcceEe---eCc--eeeeeccHH-HHhhhhhheec-ccccccCCCceEEeech----
Confidence            22110     011256678  88887765   466  579999864 36666543322 23469999988887653    


Q ss_pred             EEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                       |||+++.++++..+.-   .-..+.|+..|..+.
T Consensus      1287 -IwD~RTF~lLh~VP~L---dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -IWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             -hhhhHHHHHHhcCccc---cceEEEeccCccchh
Confidence             9999999988777643   234677887777544

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.81  E-value=1.9e-05  Score=67.91  Aligned_cols=71  Identities=27%  Similarity=0.348  Sum_probs=60.0

Q ss_pred             CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      +..+.++++  +|+...++.|+.||.|.+||...+   +..+....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus       259 ~s~v~~ca~--sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  259 PSQVICCAR--SPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCcceEEec--CcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            356889999  899999999999999999998764   33333344567889999999999999999999999975

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.80  E-value=7.5e-06  Score=68.79  Aligned_cols=244  Identities=13%  Similarity=0.051  Sum_probs=142.7

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCC---------------eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNG---------------LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (341)
                      ..|..+.||+.+.    ||.+-...+               .+.+||..+|..+..+......      .-.--+.-|..
T Consensus        72 ~~V~~~~fSP~~k----YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------~~~Wp~~k~s~  141 (561)
T COG5354          72 PDVKYLDFSPNEK----YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------YLGWPVLKFSI  141 (561)
T ss_pred             CCceecccCcccc----eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------ccccceeeeee
Confidence            4455556665554    888765544               4999999999888877763110      00110112222


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC--CEEEE-----eeCCCeEE
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLF-----GGKGVEVN  187 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~--~~l~~-----~~~d~~v~  187 (341)
                      ++        .+++---...+.|+.+. .. .   .........   ...|....++|.+  ..|+.     .+.++.++
T Consensus       142 ~D--------~y~ARvv~~sl~i~e~t-~n-~---~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~  205 (561)
T COG5354         142 DD--------KYVARVVGSSLYIHEIT-DN-I---EEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVR  205 (561)
T ss_pred             cc--------hhhhhhccCeEEEEecC-Cc-c---ccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEE
Confidence            22        22222245567777751 11 1   111111111   2456777788753  33442     46678899


Q ss_pred             EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-----------CCCeEEEEEcCCCCceeEEEEe
Q 019405          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----------NDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       188 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      +|.+..+..+..-.--..         .-..+.|  .+.|++|+.--           ....+++++++....++  ...
T Consensus       206 i~sIp~~s~l~tk~lfk~---------~~~qLkW--~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~  272 (561)
T COG5354         206 ILSIPKNSVLVTKNLFKV---------SGVQLKW--QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKD  272 (561)
T ss_pred             EEEccCCCeeeeeeeEee---------cccEEEE--ecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecc
Confidence            998875554432211110         0123455  56666654311           12468888888544333  324


Q ss_pred             cCCCeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC---CcEEEEEcC
Q 019405          257 RETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIK  331 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~v~iwd~~  331 (341)
                      -.++|...+|.|.++.+++  |-.+..+.++|++.. +...+.   ...=+.+.|+|.+++++.++.|   |.+-+||..
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCcccEEEEecCCccccceEEeccC
Confidence            5689999999998876654  457889999999865 444443   4556778899999999988765   689999987


Q ss_pred             CCcee
Q 019405          332 TRQLL  336 (341)
Q Consensus       332 ~~~~~  336 (341)
                      ....+
T Consensus       349 ~rf~~  353 (561)
T COG5354         349 GRFKV  353 (561)
T ss_pred             CceEE
Confidence            65443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=9.7e-06  Score=70.18  Aligned_cols=154  Identities=12%  Similarity=0.054  Sum_probs=100.5

Q ss_pred             ceEEEEecCCCCE-EEEeeC---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-C--C
Q 019405          164 TIAFSKVDISEKF-SLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N--D  236 (341)
Q Consensus       164 ~i~~~~~~~~~~~-l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~--d  236 (341)
                      ......|+||++. ++..+.   +..|.++|+.+++........          +......|  +||++.++... .  +
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~--SPDG~~la~~~~~~g~  256 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----------GMLVVSDV--SKDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----------CcEEeeEE--CCCCCEEEEEEccCCC
Confidence            6778899999984 554333   356999999887665433321          22445678  89998776543 2  3


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC--CEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      ..|.++|+.+++  ...+..+........|+|||+.|+..+. .+  .|++.|+.+++........ .   ....|+|+|
T Consensus       257 ~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG  330 (419)
T PRK04043        257 PDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYK  330 (419)
T ss_pred             cEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCC
Confidence            568888887654  4445444433445689999987776553 33  5888899877664333211 1   124899999


Q ss_pred             CEEEEEeCC---------CcEEEEEcCCCce
Q 019405          314 PIIASCGLD---------SYLRFWDIKTRQL  335 (341)
Q Consensus       314 ~~l~s~~~d---------g~v~iwd~~~~~~  335 (341)
                      +.|+..+..         ..|.+.|+.++..
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence            988766643         3688888887753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=1.8e-07  Score=75.80  Aligned_cols=82  Identities=20%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      |-..++.+++  +||+++++++..|..|++-....... +..+. +|..-|..++.-++. .|++|+.|++|++||+.+|
T Consensus       150 hvSml~dVav--S~D~~~IitaDRDEkIRvs~ypa~f~-IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  150 HVSMLLDVAV--SPDDQFIITADRDEKIRVSRYPATFV-IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhhhheeee--cCCCCEEEEecCCceEEEEecCcccc-hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccC
Confidence            4566999999  89999999999999999987765433 44443 599999999987654 5899999999999999999


Q ss_pred             eEEeEEe
Q 019405          291 KLLGCFI  297 (341)
Q Consensus       291 ~~~~~~~  297 (341)
                      +.+.++.
T Consensus       226 k~L~t~d  232 (390)
T KOG3914|consen  226 KLLDTCD  232 (390)
T ss_pred             Ccccccc
Confidence            8877654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=5.3e-06  Score=70.46  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             eeeeEEEEEecCCCCEEEEEeC---CCeEEEEEcCC-CCce--eEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEE
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSA-QRRP--VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLAS  284 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~i  284 (341)
                      ..|...+|  .|.|+.+++-+.   ..++.+|.+.+ ...+  +..+.  ....+.+.|+|.|++++++.   ..|.+.+
T Consensus       446 e~vi~FaW--EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  446 ESVIAFAW--EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEF  521 (698)
T ss_pred             hheeeeee--ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEE
Confidence            44777888  888988877554   35788888873 2222  33332  34578899999999988754   4688999


Q ss_pred             EECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeC------CCcEEEEEcC
Q 019405          285 VDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIK  331 (341)
Q Consensus       285 wd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~iwd~~  331 (341)
                      +|..-..+...- ..|  ...+.+.|.|.|+++++++.      |.--+||+.+
T Consensus       522 ~D~~~a~~k~~~~~eh--~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  522 YDTDYADLKDTASPEH--FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EecchhhhhhccCccc--cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            998742222221 222  35677899999999999874      4445677765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.73  E-value=7e-05  Score=60.33  Aligned_cols=190  Identities=16%  Similarity=0.105  Sum_probs=117.4

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec-CCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      .+++-...+.+..|+..         .+....+...  . ...+.+. +++ .++.+...+ +.++|..+++........
T Consensus        14 l~~~D~~~~~i~~~~~~---------~~~~~~~~~~--~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen   14 LYWVDIPGGRIYRVDPD---------TGEVEVIDLP--G-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETT---------TTEEEEEESS--S-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECC---------CCeEEEEecC--C-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            55555566777777653         2344444432  2 6677777 564 455555554 566699887544333321


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-  274 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  274 (341)
                      ...    ......+.+++  .++|++.++....        |.|..++.. ++  +..+...-...+.++|+|+++.|+ 
T Consensus        80 ~~~----~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   80 DGG----VPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             TTC----SCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred             CCC----cccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheee
Confidence            100    01255889999  8899877775543        457777766 33  333333345678999999998776 


Q ss_pred             EEeCCCCEEEEECCC--CeE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          275 IGNGSGDLASVDIRT--GKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       275 ~g~~dg~i~iwd~~~--~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +-+..+.|..+++..  .+.     ...+... .+..-.+++..+|++.++.-..+.|.++|.+ |+.+..+
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence            555678899998853  211     2222221 2247789999999988888788999999988 8887765

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.71  E-value=1.2e-05  Score=64.77  Aligned_cols=166  Identities=22%  Similarity=0.252  Sum_probs=113.5

Q ss_pred             eEEEEecC-CCCEEEEeeCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----CC
Q 019405          165 IAFSKVDI-SEKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DH  237 (341)
Q Consensus       165 i~~~~~~~-~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~  237 (341)
                      ...++.+| ....++.+-.-|+ ..+||..+++....+..+....       ..-.-.|  +++|++|++.-.     .|
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~f--s~dG~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVF--SPDGRLLYTTENDYETGRG   77 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEE--cCCCCEEEEeccccCCCcE
Confidence            34567788 4556666666654 7799999999887776654331       1223467  899999998655     47


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------------------CCCEEEEECCCCeEEeEEec-
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGCFIG-  298 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~-  298 (341)
                      .|-|||....-..+..+..|.-.-..+.+.|||+.|+++..                  +..+...|..+|+++.+..- 
T Consensus        78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp  157 (305)
T PF07433_consen   78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP  157 (305)
T ss_pred             EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence            89999999433347777776656667889999977777632                  22355566677765544211 


Q ss_pred             ---c-----------------------------------------------------ccCceeEEEecCCCCEEEEEe-C
Q 019405          299 ---K-----------------------------------------------------CSGSIRSIARHPTLPIIASCG-L  321 (341)
Q Consensus       299 ---~-----------------------------------------------------~~~~i~~~~~~~~~~~l~s~~-~  321 (341)
                         |                                                     ..+-|-+|++++++..++..| .
T Consensus       158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence               1                                                     123478888989888765554 6


Q ss_pred             CCcEEEEEcCCCceeeee
Q 019405          322 DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       322 dg~v~iwd~~~~~~~~~~  339 (341)
                      -+.+.+||..+++++...
T Consensus       238 Gg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             CCEEEEEECCCCCEeecc
Confidence            678999999999887653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.3e-05  Score=69.43  Aligned_cols=207  Identities=12%  Similarity=0.029  Sum_probs=110.6

Q ss_pred             EeccCCCCCce-EEEEcc---CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405           57 ASIDDSQNDPL-LAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (341)
Q Consensus        57 ~s~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (341)
                      .++.++|+|+. ++..+.   +..|.++|+.+++.......         .+......| .+++.      ..+++.+.+
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---------~g~~~~~~~-SPDG~------~la~~~~~~  254 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---------QGMLVVSDV-SKDGS------KLLLTMAPK  254 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---------CCcEEeeEE-CCCCC------EEEEEEccC
Confidence            34555555654 554333   35689999988765443322         122223334 33332      144555555


Q ss_pred             ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-C--eEEEEECCCCceeeecCCCCCCccC
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-V--EVNVWDLDKCEKIWTAKPPPKNSLG  209 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~~~  209 (341)
                      +.-.||-++..       .+..+.... .........|+|||+.|+..+.. +  .|.+.|+.+++..+.....      
T Consensus       255 g~~~Iy~~dl~-------~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g------  320 (419)
T PRK04043        255 GQPDIYLYDTN-------TKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG------  320 (419)
T ss_pred             CCcEEEEEECC-------CCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC------
Confidence            55555544321       111221111 11122345799999988766542 2  6888888877653322211      


Q ss_pred             ccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-  279 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-  279 (341)
                          .  ....|  +|+++.|+.....         ..|.+.|+.++.  .+.+... .......|+|||+.|+....+ 
T Consensus       321 ----~--~~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        321 ----K--NNSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTAN-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             ----C--cCceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence                1  11367  8999988876643         367888887754  3444433 233358899999887765543 


Q ss_pred             C--CEEEEECCCCeEEeEEeccccCceeE
Q 019405          280 G--DLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       280 g--~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      +  .+.+.++.. .....+... .+.+..
T Consensus       390 ~~~~L~~~~l~g-~~~~~l~~~-~g~~~~  416 (419)
T PRK04043        390 NQSALGIIRLNY-NKSFLFPLK-VGKIQS  416 (419)
T ss_pred             CcEEEEEEecCC-CeeEEeecC-CCccCC
Confidence            2  366667753 333334332 344443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.69  E-value=1.1e-07  Score=83.05  Aligned_cols=158  Identities=18%  Similarity=0.226  Sum_probs=116.7

Q ss_pred             ceEEEEecCCC--CEEEEeeCCCeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405          164 TIAFSKVDISE--KFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (341)
Q Consensus       164 ~i~~~~~~~~~--~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  238 (341)
                      .+-...|+|..  .+-++......-.+|++..   ......+.+|         ...|+.+.|+ ......+++++.|-.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhgh---------sraitd~n~~-~q~pdVlatcsvdt~  138 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGH---------SRAITDINFN-PQHPDVLATCSVDTY  138 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecC---------ccceeccccC-CCCCcceeecccccc
Confidence            35566676543  3344444444566788753   2222333443         3668899995 334568899999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCC-CEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PII  316 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l  316 (341)
                      +..||++....++..+..-......++|+.....+.+.+....|++||++.| .++..+++| -..|+.++|..-- ..+
T Consensus       139 vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~-vs~vn~~~fnr~~~s~~  217 (1081)
T KOG0309|consen  139 VHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH-VSSVNSIDFNRFKYSEI  217 (1081)
T ss_pred             ceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc-ceeeehHHHhhhhhhhh
Confidence            9999999988888877766667788999986666777788889999999866 578888887 8899999997643 468


Q ss_pred             EEEeCCCcEEEEEcCC
Q 019405          317 ASCGLDSYLRFWDIKT  332 (341)
Q Consensus       317 ~s~~~dg~v~iwd~~~  332 (341)
                      .+++.|++|++||...
T Consensus       218 ~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             cccCCCCceeeecccc
Confidence            8999999999999864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.68  E-value=5.7e-05  Score=58.46  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=128.7

Q ss_pred             eeecCCCCC-ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC
Q 019405            6 TLECPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (341)
Q Consensus         6 ~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~   84 (341)
                      ++||..+-- -.++.|...|.+.+.....+     .....+.. .+.|.+-+   .-.+++.++..|+.|++.+..|..+
T Consensus        54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-----s~~w~f~~-~~~vk~~a---~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-----SQIWNFVI-LETVKVRA---QCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eeeeeeEEECCEEEEEEccCcEEEEEecch-----hheeeeee-hhhhccce---EEcCCCceEEEecCCCcEEEecccc
Confidence            344444421 22455666666666666554     12112211 11222111   1134456899999999999999998


Q ss_pred             CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc
Q 019405           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (341)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~  164 (341)
                      ..++.+.+.-        ..-..+-+..+.+.        .|.++...|.+.--..+..+        .-.+|.....++
T Consensus       125 ~~cVykskcg--------G~~f~sP~i~~g~~--------sly~a~t~G~vlavt~~~~~--------~~~~w~~~~~~P  180 (354)
T KOG4649|consen  125 YGCVYKSKCG--------GGTFVSPVIAPGDG--------SLYAAITAGAVLAVTKNPYS--------STEFWAATRFGP  180 (354)
T ss_pred             cceEEecccC--------CceeccceecCCCc--------eEEEEeccceEEEEccCCCC--------cceehhhhcCCc
Confidence            7777665441        11111112222122        55555555655443332211        234455444455


Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE-----
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV-----  239 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i-----  239 (341)
                      |..--.. -+..+..+.-||.+.-+| ..|++++.+.....          |..---...|..+.+..+..+..+     
T Consensus       181 iF~splc-v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~Gp----------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~  248 (354)
T KOG4649|consen  181 IFASPLC-VGSSVIITTVDGVLTSFD-ESGRQVWRPATKGP----------IFMEPCESRPSCQQISLENENCFCAPLPI  248 (354)
T ss_pred             cccCcee-ccceEEEEEeccEEEEEc-CCCcEEEeecCCCc----------eecccccCCCcceEEEEecCCeEEEeccc
Confidence            5432111 134455566677777777 56666665544321          100000001222333333333322     


Q ss_pred             ---EEEEcCCCCceeEEEEecCCCeEEEEEc-C---CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc---eeEEE-
Q 019405          240 ---RLYDTSAQRRPVMSFDFRETPIKAVAEE-P---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIA-  308 (341)
Q Consensus       240 ---~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---i~~~~-  308 (341)
                         -+|..+.+.. .+.+-   .+-...+++ |   ..++|..++.||.+.|.-.+.  .+.....+ .+.   +..+. 
T Consensus       249 ~ghL~w~~~~g~t-~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~-~g~lq~~~~~el  321 (354)
T KOG4649|consen  249 AGHLLWATQSGTT-LHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSN-GGELQNLEAIEL  321 (354)
T ss_pred             cceEEEEecCCcE-EEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecc--cccccccC-CCccceEEEeec
Confidence               3444444321 11111   000011111 1   135677888999998874331  12222222 221   22221 


Q ss_pred             ----e-cC--CCCEEEEEeCCCcEEEEEcCCC
Q 019405          309 ----R-HP--TLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       309 ----~-~~--~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                          | +|  -+..|+.|+.|..|+-||+.++
T Consensus       322 ~~eIFsSPvii~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  322 SNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             CcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence                2 22  1235778889999999999875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.66  E-value=6e-05  Score=60.79  Aligned_cols=220  Identities=16%  Similarity=0.104  Sum_probs=129.6

Q ss_pred             eEEEEccCCe-EEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-----ccceeEEEEe
Q 019405           67 LLAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-----TKGKASMRSI  140 (341)
Q Consensus        67 ~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~g~~~i~~~  140 (341)
                      .++.+..-|+ ..+||..+++....+..       +.......-..|+.+..       .|++.-     ..|.|-|||+
T Consensus        19 avafaRRPG~~~~v~D~~~g~~~~~~~a-------~~gRHFyGHg~fs~dG~-------~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTGQLLQRLWA-------PPGRHFYGHGVFSPDGR-------LLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCCceeeEEcC-------CCCCEEecCEEEcCCCC-------EEEEeccccCCCcEEEEEEEC
Confidence            4666766665 78899999988776654       23344555555665552       444432     2478888987


Q ss_pred             eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee------------------CCCeEEEEECCCCceeeecCC
Q 019405          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG------------------KGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      ..       ....+..|.. ++-.-..+.+.||++.|+++-                  ++-.+...|..+|+.+.+...
T Consensus        85 ~~-------~~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   85 AR-------GYRRIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             cC-------CcEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            51       1224445553 222345667888887777642                  233455566666766655332


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEEEEcCCCCceeEEEE-------ecCCCeEEEEEcC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFD-------FRETPIKAVAEEP  268 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~  268 (341)
                      +...     |...+..+++  .++|..++..-..|       .|-+++...  . +..+.       .-...+-+|++++
T Consensus       157 p~~~-----~~lSiRHLa~--~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~-~~~~~~p~~~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  157 PPDL-----HQLSIRHLAV--DGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A-LRLLPAPEEQWRRLNGYIGSIAADR  226 (305)
T ss_pred             Cccc-----cccceeeEEe--cCCCcEEEEEecCCCCCccCCeEEEEcCCC--c-ceeccCChHHHHhhCCceEEEEEeC
Confidence            1110     2245777787  66664443332222       133333221  1 11111       1235688999999


Q ss_pred             CCceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          269 DSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       269 ~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      ++.++++.+ ..+.+.+||..+++++....-.   .+..++-.+++ ++++.+.-
T Consensus       227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCCCc
Confidence            998776655 6788999999999998877643   56777777777 56555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=3.2e-05  Score=69.25  Aligned_cols=202  Identities=14%  Similarity=0.074  Sum_probs=125.5

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCc-eeeEeeeeccccccccccceeEEEcccc-----eeEEEE
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKG-----KASMRS  139 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g-----~~~i~~  139 (341)
                      ..++.|+.+|.|.+.+-. -+.+..++.+        ... +..+...+...        .|++..+|+     .++||+
T Consensus        36 ~~vvigt~~G~V~~Ln~s-~~~~~~fqa~--------~~siv~~L~~~~~~~--------~L~sv~Ed~~~np~llkiw~   98 (933)
T KOG2114|consen   36 GSVVIGTADGRVVILNSS-FQLIRGFQAY--------EQSIVQFLYILNKQN--------FLFSVGEDEQGNPVLLKIWD   98 (933)
T ss_pred             ceEEEeeccccEEEeccc-ceeeehheec--------chhhhhHhhcccCce--------EEEEEeecCCCCceEEEEec
Confidence            369999999999998752 3333444442        122 22232223223        677766664     478999


Q ss_pred             eeecccccccCCceE---EEEEeec---CCceEEEEecCCCCEEEEeeCCCeEEEEECCC--CceeeecCCCCCCccCcc
Q 019405          140 IEVTKVSAESSCSTV---KSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       140 ~~~~~~~~~~~~~~v---~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~~  211 (341)
                      ++......  ....+   +++....   ..++.+++++.+-+.+|+|..+|.|..+.-+-  .+-.+.-..+.       
T Consensus        99 lek~~~n~--sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-------  169 (933)
T KOG2114|consen   99 LEKVDKNN--SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-------  169 (933)
T ss_pred             ccccCCCC--CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-------
Confidence            87664221  12233   4544222   45788999999999999999999999885331  11111111111       


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ...+|+.+++  ..++..++....-..|.+|.+.... |. ..+..|..++.|..+++....+++++ +..+.+||....
T Consensus       170 ~~~pITgL~~--~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  170 GKEPITGLAL--RSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             CCCCceeeEE--ecCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            2367999999  4555552333334579999998543 44 44677788899999988665455544 457999998866


Q ss_pred             eEEeEEe
Q 019405          291 KLLGCFI  297 (341)
Q Consensus       291 ~~~~~~~  297 (341)
                      ++-..|.
T Consensus       246 ~~cfaf~  252 (933)
T KOG2114|consen  246 GPCFAFE  252 (933)
T ss_pred             ceeeeec
Confidence            6666665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.63  E-value=0.00032  Score=62.70  Aligned_cols=167  Identities=16%  Similarity=0.210  Sum_probs=101.3

Q ss_pred             EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---
Q 019405          168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---  228 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---  228 (341)
                      +++++...+++.+..+                ..|.-.|+++|+..+.++................-+..  ..+++   
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~--~~~G~~~~  316 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL--KKDGKPRK  316 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe--ccCCcEEE
Confidence            4666766666655411                16888899999999988875544333221122222233  34565   


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEE--------E----EecC-CCe----------------------------EEEEEc
Q 019405          229 KFVAGTNDHQVRLYDTSAQRRPVMS--------F----DFRE-TPI----------------------------KAVAEE  267 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~~~~~~~--------~----~~~~-~~v----------------------------~~~~~~  267 (341)
                      .++.+..+|.+.+.|.++++. +..        +    .... .++                            ..++++
T Consensus       317 ~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~D  395 (527)
T TIGR03075       317 LLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYS  395 (527)
T ss_pred             EEEEeCCCceEEEEECCCCce-eccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceEC
Confidence            778999999999999998763 311        1    0000 000                            125566


Q ss_pred             CCCceEEEEeCC---------------------------------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          268 PDSFNIYIGNGS---------------------------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       268 ~~~~~l~~g~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      |+..++++...+                                 |.|.-+|+.+++.+...+.. ....-+. ..-.+.
T Consensus       396 p~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~-l~t~g~  473 (527)
T TIGR03075       396 PKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED-FPLWGGV-LATAGD  473 (527)
T ss_pred             CCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC-CCCCCcc-eEECCc
Confidence            655555443322                                 45777888888887766532 1111121 122455


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          315 IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +++.++.||.++.+|.++|+.+.++
T Consensus       474 lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       474 LVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             EEEEECCCCeEEEEECCCCCEeEEE
Confidence            7777888999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2.3e-06  Score=75.72  Aligned_cols=147  Identities=22%  Similarity=0.276  Sum_probs=106.7

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+.|++++  +++++-|+.+|.|++++... .....+. +.         . .       .-+|.++++|+.||+|.|..
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~~~~~~-~s---------~-~-------~~~Gey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQG-NPKTNFD-HS---------S-S-------ILEGEYVASCSDDGKVVIGS   99 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCC-ccccccc-cc---------c-c-------ccCCceEEEecCCCcEEEee
Confidence            34455554  68899999999999998753 2211111 11         0 0       34799999999999999999


Q ss_pred             cCCCCceeEEEEecCCCeEEEEEcCC-----CceEEEEeCCCCEEEEECCC---CeEEeEEeccccCceeEEEecCCCCE
Q 019405          244 TSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      +-+.+. ..++..+ .++.+++++|+     .+.+++|+.-| +.++.-+-   ...+ .+... .++|.++.|  .|++
T Consensus       100 l~~~~~-~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~W--~g~l  172 (846)
T KOG2066|consen  100 LFTDDE-ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIKW--RGNL  172 (846)
T ss_pred             ccCCcc-ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEEe--cCcE
Confidence            887664 5555544 68999999997     47889999888 77775431   1222 34443 789999999  5778


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeee
Q 019405          316 IASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|-++.+| |++||+.+++.+..+
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             EEEecCCC-cEEEeccccceeecc
Confidence            99998887 899999998877654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.55  E-value=3.5e-06  Score=75.60  Aligned_cols=180  Identities=16%  Similarity=0.165  Sum_probs=123.3

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .++-|+....+..+|+.+.+..+.....        ...+.-+   ..++       ..++.|...|++.+.|....+  
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--------a~~v~im---R~Nn-------r~lf~G~t~G~V~LrD~~s~~--  208 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVS--------ASGVTIM---RYNN-------RNLFCGDTRGTVFLRDPNSFE--  208 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeecc--------CCceEEE---EecC-------cEEEeecccceEEeecCCcCc--
Confidence            4777777778888888777665554431        1122222   2221       188999999999999987544  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC---------CCeEEEEECCCCceeeecCCCCCCccCccCCeeee
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (341)
                            +++.++. |.+.|..++.  .|+.|+++|.         |.-|++||++..+.+..+..+..          ..
T Consensus       209 ------~iht~~a-Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~----------P~  269 (1118)
T KOG1275|consen  209 ------TIHTFDA-HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG----------PQ  269 (1118)
T ss_pred             ------eeeeeec-cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC----------ch
Confidence                  7778875 5566665544  6889998876         44589999988776655544432          23


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                      -+.|+|+ -...+++++..|+..+-|..+...|   +..+......+..+.+++++..++.|..+|.|.+|.
T Consensus       270 flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  270 FLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hhhhccc-ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            3466433 2356778888999999984432222   333344455699999999999999999999999996

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.53  E-value=0.00031  Score=57.53  Aligned_cols=235  Identities=12%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC
Q 019405           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (341)
Q Consensus        71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~  150 (341)
                      |-..-.|.+||..+-+...++...       ...+...+   ....        .+.....+..+.++++.-..      
T Consensus        63 G~RtDvv~~~D~~TL~~~~EI~iP-------~k~R~~~~---~~~~--------~~~ls~dgk~~~V~N~TPa~------  118 (342)
T PF06433_consen   63 GERTDVVEIWDTQTLSPTGEIEIP-------PKPRAQVV---PYKN--------MFALSADGKFLYVQNFTPAT------  118 (342)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEET-------TS-B--BS-----GG--------GEEE-TTSSEEEEEEESSSE------
T ss_pred             ccceeEEEEEecCcCcccceEecC-------Ccchheec---cccc--------ceEEccCCcEEEEEccCCCC------
Confidence            333556999999998777776652       11112111   1111        33333444555666654222      


Q ss_pred             CceEEEEEeecCCceEEE------EecCC-CCEEEEeeCCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405          151 CSTVKSWNVCASGTIAFS------KVDIS-EKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       151 ~~~v~~~~~~~~~~i~~~------~~~~~-~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                        .|.+.++..+.-+..+      -.-|. ...+.+-+.||.+.-..+. .|+.......    .+...+...+..-++ 
T Consensus       119 --SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----~F~~~~dp~f~~~~~-  191 (342)
T PF06433_consen  119 --SVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----VFDPDDDPLFEHPAY-  191 (342)
T ss_dssp             --EEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----ESSTTTS-B-S--EE-
T ss_pred             --eEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----ccCCCCcccccccce-
Confidence              4455554433222211      11121 2446677788888888887 4554422110    011001111222233 


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEec------C----CCeEEEEEcCCCceEEEEeC---CC-------C
Q 019405          223 SIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFR------E----TPIKAVAEEPDSFNIYIGNG---SG-------D  281 (341)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~------~----~~v~~~~~~~~~~~l~~g~~---dg-------~  281 (341)
                       ...+..++--+.+|.|+--|+..... ....+..-      .    +.-.-+++++....|++--.   ++       .
T Consensus       192 -~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  192 -SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             -ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             -ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence             34555666678899999998886542 12222110      0    12234777765544444221   22       3


Q ss_pred             EEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEE-eCCCcEEEEEcCCCceeeee
Q 019405          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       282 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |.++|+.+++.+.++..  ..++.+|..+.+.+ +|++. ..++.+.+||..+|+.+.++
T Consensus       271 VWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            88889999999999985  34788999998765 66554 45789999999999998876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1e-05  Score=66.06  Aligned_cols=249  Identities=12%  Similarity=0.056  Sum_probs=135.4

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +..+...+..++||+..+.   ++..++.+.+|+|.|+++......+..+         ..+.+.+|--.+.+       
T Consensus       189 lp~~g~~IrdlafSp~~~G---Ll~~asl~nkiki~dlet~~~vssy~a~---------~~~wSC~wDlde~h-------  249 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEG---LLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWSCCWDLDERH-------  249 (463)
T ss_pred             ccccchhhhhhccCccccc---eeeeeccCceEEEEecccceeeeheecc---------CCceeeeeccCCcc-------
Confidence            4456677888888887763   6888999999999999998877777664         55666666544443       


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE------EecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS------KVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~------~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                      .+.+|..+|.+.|+|+.+....-......+      ...+|..+      +..+.+.+++....+  +..|++.-.....
T Consensus       250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQPEGPLMELVANV------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             eeEEeccCceEEEEEccCCCchHhhhhhhh------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence            889999999999999987543211100111      11223332      223344555544433  5556553211110


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEE-EEcCCCCceeEEE-Eec-CC------CeE
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRL-YDTSAQRRPVMSF-DFR-ET------PIK  262 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~i-wd~~~~~~~~~~~-~~~-~~------~v~  262 (341)
                            .....+..++.+.++.+  .+..+.++.....+       .|-. -|...+. ++... ..+ ..      .-.
T Consensus       322 ------p~vlele~pG~cismqy--~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~  392 (463)
T KOG1645|consen  322 ------PCVLELEPPGICISMQY--HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQ  392 (463)
T ss_pred             ------CcccccCCCcceeeeee--cCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCccccccccc
Confidence                  01111112344555555  33333333332220       0100 1111111 11111 011 00      001


Q ss_pred             EEEEcCCCceEE-EEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC-CCC-EEEEEeCCCcEEEEEcCC
Q 019405          263 AVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLP-IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       263 ~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~l~s~~~dg~v~iwd~~~  332 (341)
                      .+.-.++..+|+ .|...+.+.+||+.+++.++++..  +.+|.+++... ++. +|+.- .|..++||..++
T Consensus       393 ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es  462 (463)
T KOG1645|consen  393 AIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES  462 (463)
T ss_pred             ceeccccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence            122234445554 455568899999999999999876  47888887654 343 55555 556788887653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.52  E-value=2.3e-06  Score=73.37  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      ....+.+++++|+...++.|+.||.|.+||...+.....  .. .-..+.++|||+|.+++.|+..|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            567899999999999999999999999999976643322  22 446788999999999999999999999998754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=2.5e-05  Score=69.90  Aligned_cols=194  Identities=14%  Similarity=0.185  Sum_probs=122.5

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCc----
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCE----  195 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~----  195 (341)
                      .++.|+.+|.+.+.+-.+.         .++-|.+...+-+..+....+.++|++.+.|+     .|++|+++..+    
T Consensus        37 ~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   37 SVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            8999999999988864321         23555554433355555545557888877664     48999997532    


Q ss_pred             --eee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CC-ceeEEEEecCCCeEEEEEcC
Q 019405          196 --KIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QR-RPVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       196 --~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~  268 (341)
                        .+.  .+..+...    ..+.++.+++.  +.+-+.+|+|-.||.|..+.-.-  .. ...........+|+.+++..
T Consensus       108 P~c~~~~ri~~~~np----~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNP----TNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cceeeeeeeeccCCC----CCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence              120  11110100    12466778888  67788999999999999885321  11 11222223467999999988


Q ss_pred             CCceEEEEeCCCCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          269 DSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      ++..++-......|.+|.+....+... +..| ...++|..+++....+++++. ..+.+|+....+.
T Consensus       182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGP  247 (933)
T ss_pred             CCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcce
Confidence            887633333455799999874333333 5554 889999999987775665544 3688888875443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=1.7e-05  Score=70.40  Aligned_cols=173  Identities=14%  Similarity=0.087  Sum_probs=117.5

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++-|+.+|.+.+.+....+.         ..++  +...      +.+|.++++|+.||+|.|-.+.+.+....+... 
T Consensus        51 ~~~~GtH~g~v~~~~~~~~~~---------~~~~--~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-  112 (846)
T KOG2066|consen   51 FFALGTHRGAVYLTTCQGNPK---------TNFD--HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-  112 (846)
T ss_pred             eeeeccccceEEEEecCCccc---------cccc--cccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-
Confidence            788888889998887654320         1111  1111      568999999999999999998887766554433 


Q ss_pred             CCccCccCCeeeeEEEEEecCC-----CCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                               .++.++++  +|+     .+.+++|+.-| +.++.-+-.. ..-..+....++|.++.|.  |.++|=++.
T Consensus       113 ---------rpiksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  113 ---------RPIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             ---------CcceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence                     34788899  555     56889999888 7777643211 1122455677899999995  558887776


Q ss_pred             CCCEEEEECCCCeEEeEEecccc-----CceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +| |++||+.+++.+..++..+.     ..-..+.|.++.+++ .| ...+|+|..++.
T Consensus       179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIKK  234 (846)
T ss_pred             CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEec
Confidence            65 89999999888877765421     123456776665443 33 555788888873

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=0.00038  Score=61.73  Aligned_cols=94  Identities=15%  Similarity=0.026  Sum_probs=66.9

Q ss_pred             CCeEEEEEcCC----CCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeE------------EeEEec
Q 019405          236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG  298 (341)
Q Consensus       236 d~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~------------~~~~~~  298 (341)
                      ++.|.+.|.++    +...+..+. -......+.++|||+++++++ .++.+.+.|+.+.+.            ..+..-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35688888776    222233333 334567899999999887666 589999999987542            333332


Q ss_pred             cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      . . .-...+|.++|....|--.|..|..||+.+
T Consensus       374 G-l-GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 G-L-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             C-C-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            2 2 334678999999888889999999999876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=0.00019  Score=67.03  Aligned_cols=208  Identities=15%  Similarity=0.127  Sum_probs=130.0

Q ss_pred             CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      .++.|+++.++....        .++.+...|.+.+-+.+...         +.+-. .-...|.+++|+||++.++..+
T Consensus        67 gd~~i~s~~fl~d~~--------~i~v~~~~G~iilvd~et~~---------~eivg-~vd~GI~aaswS~Dee~l~liT  128 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTN--------SICVITALGDIILVDPETLE---------LEIVG-NVDNGISAASWSPDEELLALIT  128 (1265)
T ss_pred             CCcceEEEEEecccc--------eEEEEecCCcEEEEcccccc---------eeeee-eccCceEEEeecCCCcEEEEEe
Confidence            447899999887777        88899999999888654332         11111 1245789999999999999988


Q ss_pred             CCCeEEEEECC----CCcee-------------------eecCCCCCCc------------cCccCCeeeeEEEEEecCC
Q 019405          182 KGVEVNVWDLD----KCEKI-------------------WTAKPPPKNS------------LGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       182 ~d~~v~i~d~~----~~~~~-------------------~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~  226 (341)
                      ..+++.+-+-.    ..+.+                   ..+.+..+..            -++...+.=.++.|  ..|
T Consensus       129 ~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgD  206 (1265)
T KOG1920|consen  129 GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGD  206 (1265)
T ss_pred             CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccC
Confidence            88777665431    11111                   1111111000            00001122345888  789


Q ss_pred             CCEEEEE-----eCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeE----E
Q 019405          227 HRKFVAG-----TNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL----L  293 (341)
Q Consensus       227 ~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~----~  293 (341)
                      |.++++.     ..-+.|++||.. +.  +.... ....--.+++|-|.|..+++-.   .|+.|.+|.- +|..    .
T Consensus       207 g~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~  282 (1265)
T KOG1920|consen  207 GEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFV  282 (1265)
T ss_pred             CcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccc
Confidence            9999883     223799999977 22  22111 1223345799999999888754   4567888874 3332    2


Q ss_pred             eEEeccccCceeEEEecCCCCEEEE---EeCCCcEEEEEcCCCc
Q 019405          294 GCFIGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~~~~~l~s---~~~dg~v~iwd~~~~~  334 (341)
                      ..++.. ..+|..++|+.++..|+.   ......|++|-+.+..
T Consensus       283 l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  283 LPFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cCCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            223332 445999999999999887   4455569999887643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.41  E-value=0.00039  Score=61.91  Aligned_cols=243  Identities=14%  Similarity=0.107  Sum_probs=132.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCcee--eEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      .+.+++.++.|.-.|..+|+.+..+........  ....+.  ...... .+        .++.++.+|.+..+|.+..+
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~--~~~~~~~~g~~~~~-~~--------~V~v~~~~g~v~AlD~~TG~  131 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADR--GCCDVVNRGVAYWD-PR--------KVFFGTFDGRLVALDAETGK  131 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccc--cccccccCCcEEcc-CC--------eEEEecCCCeEEEEECCCCC
Confidence            577888899999999999998877654321000  000000  011111 12        77778888888888765443


Q ss_pred             cccccCCceEEEEEeecCCce---EEEEecC--CCCEEEEee---------CCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          145 VSAESSCSTVKSWNVCASGTI---AFSKVDI--SEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i---~~~~~~~--~~~~l~~~~---------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                                .+|.......+   ..+.-+|  .+..++.++         .++.|..+|..+++.++.+..........
T Consensus       132 ----------~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~  201 (488)
T cd00216         132 ----------QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF  201 (488)
T ss_pred             ----------EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence                      34443322221   0011111  124444443         36789999999999998876532211110


Q ss_pred             cCC-----------eee-eEEEEEecCCCCEEEEEeCCC------------------eEEEEEcCCCCceeEEEEecCCC
Q 019405          211 FTP-----------TWF-TSAAFLSIDDHRKFVAGTNDH------------------QVRLYDTSAQRRPVMSFDFRETP  260 (341)
Q Consensus       211 ~~~-----------~~v-~~~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~  260 (341)
                      ...           ..+ ...++  .+.+.+++.++.++                  .|.-+|..+++. +-.++.-...
T Consensus       202 ~~~~~~~~~~~~~g~~vw~~pa~--d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~  278 (488)
T cd00216         202 PTWGPDRQMWGPGGGTSWASPTY--DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHD  278 (488)
T ss_pred             CCCCCCcceecCCCCCccCCeeE--eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCC
Confidence            000           001 12233  34566788877665                  788999998875 4333211111


Q ss_pred             eE------EEEEc----CCCc---eEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE---------
Q 019405          261 IK------AVAEE----PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS---------  318 (341)
Q Consensus       261 v~------~~~~~----~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s---------  318 (341)
                      ..      ...+.    -++.   .+++++.+|.++.+|.++|+.+......    ...++.+| +..++.         
T Consensus       279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~-~~vyv~~~~~~~~~~  353 (488)
T cd00216         279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP-GLVYLGAFHIPLGLP  353 (488)
T ss_pred             CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC-ceEEEccccccccCc
Confidence            10      01111    1232   6788889999999999999998766421    11233333 222221         


Q ss_pred             --------EeCCCcEEEEEcCCCceeee
Q 019405          319 --------CGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       319 --------~~~dg~v~iwd~~~~~~~~~  338 (341)
                              ...+|.|.-.|+.+|+.+.+
T Consensus       354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~  381 (488)
T cd00216         354 PQKKKRCKKPGKGGLAALDPKTGKVVWE  381 (488)
T ss_pred             ccccCCCCCCCceEEEEEeCCCCcEeeE
Confidence                    12356777788888776654

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.35  E-value=0.00018  Score=55.80  Aligned_cols=137  Identities=16%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      ..+++.|+..+.+..-|..+|...++....          .++.+-+..   -+++++.|+..|.+++.+.+++++ ...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----------~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~-~w~   88 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----------VRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQ-IWN   88 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC----------ceeeeeeEE---ECCEEEEEEccCcEEEEEecchhh-eee
Confidence            467788999999999999999988875543          334444442   477899999999999999999875 555


Q ss_pred             EEecCCCeE-EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          254 FDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       254 ~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      +..-+ .|. .....+++..+..|+.|+..+..|.++..++.+.+.. .+...+-+..|....|..+...|.|.
T Consensus        89 f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   89 FVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             eeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceEE
Confidence            55432 232 3445678999999999999999999999999887754 44444555666333333344444443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.34  E-value=0.0012  Score=55.53  Aligned_cols=227  Identities=15%  Similarity=0.159  Sum_probs=130.1

Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc---------c-ceeEEEEeeecc
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------K-GKASMRSIEVTK  144 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~-g~~~i~~~~~~~  144 (341)
                      ..|++.|..+.+.+..+...       ....+.++..+.-..... .....++.|+.         . |.+.++.+...+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~-------~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~   73 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE-------PNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP   73 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE-------TTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-
T ss_pred             cEEEEEeCCCCeEEEEEECC-------CCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEccc
Confidence            46888888888777766652       335566666655332100 01226666643         2 889999887541


Q ss_pred             cccccCCce-EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEE
Q 019405          145 VSAESSCST-VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       145 ~~~~~~~~~-v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                          ..+.. ..+......++|.+++.- ++. ++++. ++.|.+|++...+ .......+.        +..+.++.. 
T Consensus        74 ----~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~--------~~~i~sl~~-  137 (321)
T PF03178_consen   74 ----ENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDS--------PFYITSLSV-  137 (321)
T ss_dssp             --------EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-B--------SSSEEEEEE-
T ss_pred             ----ccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecc--------eEEEEEEec-
Confidence                01112 233444557888888876 344 44433 4689999998776 332222111        123666666 


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-------C--e
Q 019405          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------G--K  291 (341)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~--~  291 (341)
                         .+++++.|.....+.++..+.....+..+.  .....++++.+-+++..++++..+|.+.++....       +  +
T Consensus       138 ---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~  214 (321)
T PF03178_consen  138 ---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPK  214 (321)
T ss_dssp             ---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTB
T ss_pred             ---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccc
Confidence               366999999888888886554222133222  2344688888876667899999999999997652       2  3


Q ss_pred             EEeEEeccccCceeEE---EecCC--C------CEEEEEeCCCcEEEE
Q 019405          292 LLGCFIGKCSGSIRSI---ARHPT--L------PIIASCGLDSYLRFW  328 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~---~~~~~--~------~~l~s~~~dg~v~iw  328 (341)
                      +.....-|....|+++   .+.|.  +      +.++.++.+|.|...
T Consensus       215 L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  215 LERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            3333334445678887   55552  2      248888899988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.30  E-value=0.00064  Score=58.21  Aligned_cols=183  Identities=14%  Similarity=0.080  Sum_probs=100.9

Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe---cCCC--
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH--  227 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~--  227 (341)
                      +..+.+.. .++|.+++.+ |=.+++.|+.+|.+.|.|++....+..-.... ..........++++.|..   ..|+  
T Consensus        78 P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   78 PLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             chhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence            44555654 7899999997 56799999999999999998877665522111 001111235677787732   2233  


Q ss_pred             -CEEEEEeCCCeEEEEEcCC-C-Cc----eeEEEEecCCCeEEEE-EcCC-----------------C---ceEEEEeCC
Q 019405          228 -RKFVAGTNDHQVRLYDTSA-Q-RR----PVMSFDFRETPIKAVA-EEPD-----------------S---FNIYIGNGS  279 (341)
Q Consensus       228 -~~l~~~~~d~~i~iwd~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~g~~d  279 (341)
                       -.+++|...|.+.+|.+.- . ..    .......+.++|..+. ++.+                 +   +-+++...+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             4688999999999998752 1 11    1111123555665554 3221                 0   123444557


Q ss_pred             CCEEEEECCCCeEEeEEeccccCceeEEEec-----CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-----PTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..++++...+.+..++.... .-....+.+-     ..+..|++-..+|.|+++.+..-+.+..+
T Consensus       235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            78999999888776655422 2233334442     35667888899999999999988777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.29  E-value=0.0001  Score=49.63  Aligned_cols=104  Identities=11%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      |++++++.-...-.+.|++|+.|..||||+-+  +.+.++...         +.++++..... .        .++.+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~---------~~v~~L~~~~~-~--------~F~Y~l~   61 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET---------DKVTSLCSLGG-G--------RFAYALA   61 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc---------cceEEEEEcCC-C--------EEEEEec
Confidence            44555443222222469999999999999864  455555542         66777776655 2        8999999


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC---CC-CEEEEeeCCCeEE
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SE-KFSLFGGKGVEVN  187 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~  187 (341)
                      +|++-+|+-            ..++|.......+.++.+..   || ..|++|-.+|.|-
T Consensus        62 NGTVGvY~~------------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   62 NGTVGVYDR------------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CCEEEEEeC------------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999999863            67899999888888877643   33 3688888888764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.28  E-value=0.0006  Score=63.86  Aligned_cols=245  Identities=11%  Similarity=0.058  Sum_probs=138.5

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      ..+..+.|-.+..    -++.+..+|.|.+-|.++....  +-+       .-++.|.++.|.+...        .++..
T Consensus        69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~et~~~e--ivg-------~vd~GI~aaswS~Dee--------~l~li  127 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN----SICVITALGDIILVDPETLELE--IVG-------NVDNGISAASWSPDEE--------LLALI  127 (1265)
T ss_pred             cceEEEEEecccc----eEEEEecCCcEEEEccccccee--eee-------eccCceEEEeecCCCc--------EEEEE
Confidence            3444455544444    5888888999999988765432  212       1236677777776666        77777


Q ss_pred             cccceeEEEEeeecccc---------------cccCCceEEEEEeec--------------------CCceEEEEecCCC
Q 019405          130 TTKGKASMRSIEVTKVS---------------AESSCSTVKSWNVCA--------------------SGTIAFSKVDISE  174 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~---------------~~~~~~~v~~~~~~~--------------------~~~i~~~~~~~~~  174 (341)
                      +..+++.+..-.+.+..               ..+....-..+....                    ...=..+.|-.||
T Consensus       128 T~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg  207 (1265)
T KOG1920|consen  128 TGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG  207 (1265)
T ss_pred             eCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence            77777776654433221               000000000111000                    0112358899999


Q ss_pred             CEEEEe-----eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCC
Q 019405          175 KFSLFG-----GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSA  246 (341)
Q Consensus       175 ~~l~~~-----~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~  246 (341)
                      +++++.     .....|++||-+ +..-..-...         ..--.+++|  .|.|.++++-.   .|+.|.+|.-+.
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~---------~~l~~~LsW--kPsgs~iA~iq~~~sd~~IvffErNG  275 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV---------EGLQHSLSW--KPSGSLIAAIQCKTSDSDIVFFERNG  275 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-chhhcccCcc---------cccccceee--cCCCCeEeeeeecCCCCcEEEEecCC
Confidence            999973     223689999976 4332221111         122457899  78899988743   456799998654


Q ss_pred             CCce--eEEEEecCCCeEEEEEcCCCceEEE---EeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCC-EEEE
Q 019405          247 QRRP--VMSFDFRETPIKAVAEEPDSFNIYI---GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIAS  318 (341)
Q Consensus       247 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~---g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l~s  318 (341)
                      ...-  ...+.....++..++|+.++..|++   ......|++|-+.+...  ...+... ....  +.|+|... .|..
T Consensus       276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~~L~v  352 (1265)
T KOG1920|consen  276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEKTLHV  352 (1265)
T ss_pred             ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCceeEEE
Confidence            2211  1112223345899999999998887   33444599999887643  2233322 1122  77888543 2333


Q ss_pred             EeCCCcEEEEEc
Q 019405          319 CGLDSYLRFWDI  330 (341)
Q Consensus       319 ~~~dg~v~iwd~  330 (341)
                      -..+|...++|.
T Consensus       353 ~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  353 LRESGQRLVRDF  364 (1265)
T ss_pred             EecCCcEEEEEE
Confidence            335665555443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=1.4e-06  Score=78.06  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=107.4

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV  239 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i  239 (341)
                      ....+|++|+.+.+.|+.|+..|.|++|++.+|........|.         ..++-+.-  +.+|..+++.+.-.  ..
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---------SavT~veP--s~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---------SAVTLVEP--SVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---------cccccccc--cCCcceeeeeccccCchH
Confidence            3568899999999999999999999999999998877777654         44666554  67888777655433  46


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEE
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPII  316 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l  316 (341)
                      .+|++...-.+.+++..    -.++.|+...+.-+.|.......+||++++..+.++-..   ....-+...|+|+..++
T Consensus      1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            79998875455666653    357888876656666777778999999998776653211   01122556677776655


Q ss_pred             EEEeCCCcEEEEEcCCCcee
Q 019405          317 ASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       317 ~s~~~dg~v~iwd~~~~~~~  336 (341)
                      +   .||  .+||++..+.+
T Consensus      1246 l---ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred             e---eCc--eeeeeccHHHH
Confidence            4   333  35666554433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.0013  Score=58.48  Aligned_cols=94  Identities=16%  Similarity=0.042  Sum_probs=62.9

Q ss_pred             CCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCc-------
Q 019405          183 GVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR-------  249 (341)
Q Consensus       183 d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-------  249 (341)
                      ++.|.+.|..+     .+.+..+...          .....+.+  +||++++++++ .+.+|.++|+.+.+.       
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG----------KsPHGV~v--SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP----------KNPHGVNT--SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC----------CCccceEE--CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            34567777665     2333333322          33667888  89999887765 488999999987442       


Q ss_pred             ----eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          250 ----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       250 ----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                          .+........+ ...+|.++|....+-.-|..|..||+..
T Consensus       363 ~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence                12222223333 3567899998777888899999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.18  E-value=0.003  Score=54.95  Aligned_cols=221  Identities=10%  Similarity=0.040  Sum_probs=114.6

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      ........+.++|+++    ++++ +.||.-.|+.....+....             +.-...+|.. .+        .+
T Consensus        30 ~~~~~p~~ls~npngr----~v~V-~g~geY~iyt~~~~r~k~~-------------G~g~~~vw~~-~n--------~y   82 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGR----FVLV-CGDGEYEIYTALAWRNKAF-------------GSGLSFVWSS-RN--------RY   82 (443)
T ss_dssp             E-SS--SEEEE-TTSS----EEEE-EETTEEEEEETTTTEEEEE-------------EE-SEEEE-T-SS--------EE
T ss_pred             CCCcCCeeEEECCCCC----EEEE-EcCCEEEEEEccCCccccc-------------CceeEEEEec-Cc--------cE
Confidence            3444456677776666    6666 5588988888432222111             2233445544 33        66


Q ss_pred             EEEcccceeEEE-EeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          127 LTCTTKGKASMR-SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       127 ~~~~~~g~~~i~-~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      ++-..++.+.|+ ++....         ++.....  ..+..+-  + |.+|...+.+ .|.+||+.+++.+..+...  
T Consensus        83 Av~~~~~~I~I~kn~~~~~---------~k~i~~~--~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--  145 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEV---------VKSIKLP--FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--  145 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-T---------T-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred             EEEECCCeEEEEEcCcccc---------ceEEcCC--cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence            666667788875 332111         1111111  1122222  2 7777776655 8999999999999988853  


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC----------CceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----------RRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                               .|..+.|  ++++++++..+.+ .+.+++....          +.....+..-...|.+..|..+ -++++
T Consensus       146 ---------~vk~V~W--s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt  212 (443)
T PF04053_consen  146 ---------AVKYVIW--SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT  212 (443)
T ss_dssp             ---------E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE
T ss_pred             ---------CCcEEEE--ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE
Confidence                     3788999  8999999988755 6777775532          0124444443568899999766 34444


Q ss_pred             EeCCCCEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          276 GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ...  .|+.  +..|+.  +..+    ..+++=+...|..+.+.....|+.|..+.+..
T Consensus       213 T~~--~lkY--l~~Ge~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  213 TSN--HLKY--LVNGETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -TT--EEEE--EETTEEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             cCC--eEEE--EEcCCcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            332  6666  333433  3323    45677788888778888888898888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.17  E-value=0.0026  Score=52.21  Aligned_cols=231  Identities=14%  Similarity=0.117  Sum_probs=125.2

Q ss_pred             CceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           65 DPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      ++.|+.|+.+| |.+++... .+.......          ..+..+...+..+        .++.-+ |+.+.++++..-
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~--------~llvLs-d~~l~~~~L~~l   66 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELN--------LLLVLS-DGQLYVYDLDSL   66 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccC--------EEEEEc-CCccEEEEchhh
Confidence            45799999888 89999833 233222222          3477777777655        444443 599999997654


Q ss_pred             ccccccCCce-----EEEEEeecCCceEEEE--ecCCCCEEEEeeCCCeEEEEECCCC-----ceeeecCCCCCCccCcc
Q 019405          144 KVSAESSCST-----VKSWNVCASGTIAFSK--VDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       144 ~~~~~~~~~~-----v~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~~~~~~~~~  211 (341)
                      ..........     ...........+...+  -...+...++......|.+|.....     +...++..+        
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--------  138 (275)
T PF00780_consen   67 EPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--------  138 (275)
T ss_pred             ccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--------
Confidence            3222110000     0000111223344444  2223333344444558988887653     233444332        


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe------------cCCCeEEEEEcCCCceEEEEeCC
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------------RETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                        ..+..++|.    ++.++.|..+ ...+.|+.++.. ...+..            ...++..+... ++.+|++-  +
T Consensus       139 --~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~  207 (275)
T PF00780_consen  139 --DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--D  207 (275)
T ss_pred             --CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--c
Confidence              448888993    5677777655 478889886442 211111            11233344443 34555542  3


Q ss_pred             CCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          280 GDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       280 g~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ..-.+.|. .|+..+  .+..  .....++++  ..++|+..+.+ .|.||++.++++++++.
T Consensus       208 ~~g~fv~~-~G~~~r~~~i~W--~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  208 NIGVFVNK-NGEPSRKSTIQW--SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP  264 (275)
T ss_pred             ceEEEEcC-CCCcCcccEEEc--CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence            33333343 444332  3333  235556666  45677777665 59999999999998863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.6e-05  Score=68.68  Aligned_cols=94  Identities=12%  Similarity=0.127  Sum_probs=77.9

Q ss_pred             eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeE-EEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                      ..+..+.|  +|.-.++|.+..+|.|-+..+. .++ +.++..+...++ +++|.|||+.|++|-.||+|++.|+.++..
T Consensus        21 ~~i~~~ew--nP~~dLiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEW--NPKMDLIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEE--cCccchhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            34778889  8889999999999999999888 344 777776777777 999999999999999999999999999988


Q ss_pred             EeEEeccccCceeEEEecC
Q 019405          293 LGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~  311 (341)
                      +..+.......|.++-|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            8774332356788888863

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.11  E-value=2.8e-05  Score=68.10  Aligned_cols=115  Identities=7%  Similarity=0.003  Sum_probs=88.1

Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---  292 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---  292 (341)
                      +.--++  +..+++++.|+.-|.+++|+...++.......+....+..+..+++..++|+|+..|.|.++-+....+   
T Consensus        36 v~lTc~--dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCV--DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEe--ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            443344  568899999999999999998876543333333555667778899999999999999999998775422   


Q ss_pred             E--eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          293 L--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       293 ~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +  ..+...|...|++++|++++..+.+|..-|.|..-.+.+
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1  222222378999999999999999999999999888876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=7.2e-07  Score=76.89  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=117.9

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeC----CCeEEEEECCCCc--ee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGK----GVEVNVWDLDKCE--KI  197 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~----d~~v~i~d~~~~~--~~  197 (341)
                      .+.+|..+|.+.+-.+......       -..+-..+....++++|++ |.+.||.|-.    |..+.|||+.++-  +.
T Consensus        72 IlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk  144 (783)
T KOG1008|consen   72 ILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK  144 (783)
T ss_pred             hhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc
Confidence            7788888899988877644321       0112223345788999987 4566776532    4569999998751  11


Q ss_pred             --eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEE
Q 019405          198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIY  274 (341)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  274 (341)
                        ..+...        ......+++|  -.+.+++++|...+.+.++|++........+  ....+..+...| .+.+++
T Consensus       145 e~~~fs~~--------~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  145 ESPLFSSS--------TLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccccc--------cccCcccccc--ccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence              111110        1133557888  6788899999999999999999532112222  334566778888 556766


Q ss_pred             EEeCCCCEEEEE-CCCCeE-EeEEecc---ccCceeEEEecCCCC-EEEEEeCC-CcEEEEEcCC
Q 019405          275 IGNGSGDLASVD-IRTGKL-LGCFIGK---CSGSIRSIARHPTLP-IIASCGLD-SYLRFWDIKT  332 (341)
Q Consensus       275 ~g~~dg~i~iwd-~~~~~~-~~~~~~~---~~~~i~~~~~~~~~~-~l~s~~~d-g~v~iwd~~~  332 (341)
                      + ..||.|.+|| .++-+. +..+...   ....+..++|.|... .+++...| ++|+++|+..
T Consensus       213 s-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  213 S-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            5 4599999999 443322 2222111   123489999999665 55555544 6899998753

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.06  E-value=0.00039  Score=62.71  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             CCCCCceEEEEc----cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeE
Q 019405           61 DSQNDPLLAVAR----KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS  136 (341)
Q Consensus        61 ~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  136 (341)
                      ++|..+++++++    ..|.|.||- ++|++.......         -.+.+++|.+..-        .|+.+=.-|.+.
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------~hatSLCWHpe~~--------vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------VHATSLCWHPEEF--------VLAQGWEMGVSD   84 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------eehhhhccChHHH--------HHhhccccceeE
Confidence            455556777765    358888884 356554433221         2345577777665        777777788899


Q ss_pred             EEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405          137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD  192 (341)
Q Consensus       137 i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~  192 (341)
                      +|.....         ........|..+|..+.|+++|..++++..-|.|.+|...
T Consensus        85 v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   85 VQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9976432         3344455678899999999999999999999999999876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.05  E-value=1.6e-06  Score=74.83  Aligned_cols=202  Identities=13%  Similarity=0.078  Sum_probs=122.5

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch-heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      .+.|++...+..  ..++++|..+|.|.+-......-- .++..       ++....++++|.+.+.+       .|++|
T Consensus        58 y~kcva~~y~~d--~cIlavG~atG~I~l~s~r~~hdSs~E~tp-------~~ar~Ct~lAwneLDtn-------~LAag  121 (783)
T KOG1008|consen   58 YVKCVASFYGND--RCILAVGSATGNISLLSVRHPHDSSAEVTP-------GYARPCTSLAWNELDTN-------HLAAG  121 (783)
T ss_pred             CceeehhhcCCc--hhhhhhccccCceEEeecCCcccccceecc-------cccccccccccccccHH-------HHHhh
Confidence            344555444433  336899999999999877543221 11111       34466777777766542       55555


Q ss_pred             cc----cceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCC
Q 019405          130 TT----KGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP  202 (341)
Q Consensus       130 ~~----~g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~  202 (341)
                      -.    +..+.||++...-..      +...|..  .......+++|..+.+++.+|.....++++|++.. .....+..
T Consensus       122 ldkhrnds~~~Iwdi~s~ltv------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT  195 (783)
T KOG1008|consen  122 LDKHRNDSSLKIWDINSLLTV------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT  195 (783)
T ss_pred             hhhhcccCCccceecccccCC------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh
Confidence            33    466789998654110      1111111  12234457778888889999999989999999842 12222221


Q ss_pred             CCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEE-cCCCCceeEEEEecCC----CeEEEEEcCCC-ceEEE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYD-TSAQRRPVMSFDFRET----PIKAVAEEPDS-FNIYI  275 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~----~v~~~~~~~~~-~~l~~  275 (341)
                                 ..+..+..  .| .++++++-. |+.|.+|| .++-+.+++.+...+.    .+..++|+|.. .++++
T Consensus       196 -----------k~vqG~tV--dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~  261 (783)
T KOG1008|consen  196 -----------KYVQGITV--DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV  261 (783)
T ss_pred             -----------hhccccee--cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence                       22555566  55 677877755 99999999 5555555555443333    48899999943 34444


Q ss_pred             Ee-CCCCEEEEECC
Q 019405          276 GN-GSGDLASVDIR  288 (341)
Q Consensus       276 g~-~dg~i~iwd~~  288 (341)
                      .. ..++|+++|+.
T Consensus       262 l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  262 LSRDSITIRLYDIC  275 (783)
T ss_pred             hccCcceEEEeccc
Confidence            44 45889999976

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.03  E-value=0.0073  Score=52.45  Aligned_cols=208  Identities=16%  Similarity=0.091  Sum_probs=104.5

Q ss_pred             eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEE
Q 019405           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK  155 (341)
Q Consensus        76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~  155 (341)
                      .|+||+. .|+.+.++.-.       . +.++++.|... .        .|+....+|.++++++....  .-.....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~-------~-~~iv~~~wt~~-e--------~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~  121 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWD-------S-GRIVGMGWTDD-E--------ELVVVQSDGTVRVYDLFGEF--QFSLGEEIE  121 (410)
T ss_pred             EEEEECC-CCCEeEEEEEC-------C-CCEEEEEECCC-C--------eEEEEEcCCEEEEEeCCCce--eechhhhcc
Confidence            5999987 57777766541       2 78888888663 3        67788899999999874221  000000111


Q ss_pred             EEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEE-CCCCceeeecCCCCCCccCccCCeeeeE-EEEEecCCCCEEEEE
Q 019405          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWD-LDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG  233 (341)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~  233 (341)
                      ...+ ....+....+..+|-.++  ..++.+.+.+ .........+.................. ..+  ..+....+..
T Consensus       122 ~~~v-~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~  196 (410)
T PF04841_consen  122 EEKV-LECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILL  196 (410)
T ss_pred             ccCc-ccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEEEE
Confidence            1111 011122223333443333  3344444432 2211111111110000000000000111 122  3344444444


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      ..++.+.+.+-...+    .+. ..+++..++.||+++++|.-..+|.+.+.+..-.+.+..+..........|.|.-+.
T Consensus       197 ~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  197 ANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             ecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            555566644433211    122 235899999999999999999999999988765555555544323456667776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.03  E-value=0.0022  Score=52.73  Aligned_cols=215  Identities=15%  Similarity=0.137  Sum_probs=116.2

Q ss_pred             EEEeccCCCCCceEEE--EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405           55 LAASIDDSQNDPLLAV--ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (341)
Q Consensus        55 ~~~s~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (341)
                      .+++.|++    ++++  .+--..|.|-|+..++.+.++..            .-|...++..+.       .+.+-+.|
T Consensus       100 ~~ls~dgk----~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------PGC~~iyP~~~~-------~F~~lC~D  156 (342)
T PF06433_consen  100 FALSADGK----FLYVQNFTPATSVTVVDLAAKKVVGEIDT------------PGCWLIYPSGNR-------GFSMLCGD  156 (342)
T ss_dssp             EEE-TTSS----EEEEEEESSSEEEEEEETTTTEEEEEEEG------------TSEEEEEEEETT-------EEEEEETT
T ss_pred             eEEccCCc----EEEEEccCCCCeEEEEECCCCceeeeecC------------CCEEEEEecCCC-------ceEEEecC
Confidence            44555554    5544  34456677777777777766654            224445554432       68888889


Q ss_pred             ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee--cCCCC-CCccC
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP-KNSLG  209 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~-~~~~~  209 (341)
                      |.+.-..++......   ...-.+|+......+..-++...+..++--+.+|.|+--|+........  ..... ...-.
T Consensus       157 Gsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~  233 (342)
T PF06433_consen  157 GSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD  233 (342)
T ss_dssp             SCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred             CceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccccc
Confidence            999888876433221   0011244433222222334455555566578889999888875442211  11000 00000


Q ss_pred             ccCCeeeeEEEEEecCCCCEEEEEeC---CC-------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEE-e
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFVAGTN---DH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIG-N  277 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~~~~~---d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g-~  277 (341)
                      ---++.-.-+++  ++..++|.+--.   ++       .|-++|+.+.++ +..+... .++.++..+.+.+ +|++. .
T Consensus       234 ~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~  309 (342)
T PF06433_consen  234 GWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPLE-HPIDSIAVSQDDKPLLYALSA  309 (342)
T ss_dssp             TEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEEE-EEESEEEEESSSS-EEEEEET
T ss_pred             CcCCcceeeeee--ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeCC-CccceEEEccCCCcEEEEEcC
Confidence            001233445677  344444443211   11       477888888776 6666542 3677999988764 55544 4


Q ss_pred             CCCCEEEEECCCCeEEeEEecc
Q 019405          278 GSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      .++.+.+||..+|++++++..-
T Consensus       310 ~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  310 GDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             TTTEEEEEETTT--EEEEE---
T ss_pred             CCCeEEEEeCcCCcEEeehhcc
Confidence            5789999999999999988754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3.4e-05  Score=66.84  Aligned_cols=78  Identities=18%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee-EEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      ..+..+.|+|.-.++|.+..+|.|-+..+. .+.+.+++-+ ...++ +++|.|||+.||.|=.||+|++.|+.++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            357789999999999999999999999887 8888889876 55666 99999999999999999999999999988776


Q ss_pred             e
Q 019405          338 A  338 (341)
Q Consensus       338 ~  338 (341)
                      .
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            5

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.01  E-value=0.0014  Score=55.07  Aligned_cols=144  Identities=10%  Similarity=0.105  Sum_probs=88.3

Q ss_pred             CCEEEEeeC----------CCeEEEEECCCC----ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          174 EKFSLFGGK----------GVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       174 ~~~l~~~~~----------d~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      ..++++|+.          .|.|.++++...    ..+..+....       .+++|++++-.   ++ +|+++. ++.|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~---~~-~lv~~~-g~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF---NG-RLVVAV-GNKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE---TT-EEEEEE-TTEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh---CC-EEEEee-cCEE
Confidence            467776643          288999999874    1222221111       13568888773   44 455443 5799


Q ss_pred             EEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-Ce-EEeEEeccccCceeEEEecCCCCE
Q 019405          240 RLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GK-LLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      .+|++...+. +.....+  ...+.++...  +.++++|..-..+.++..+. .+ +...-+......++++.|-+++..
T Consensus       110 ~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~  186 (321)
T PF03178_consen  110 YVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT  186 (321)
T ss_dssp             EEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred             EEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence            9999998662 2222222  2355555554  55999999888888874432 33 332222222457889999866679


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 019405          316 IASCGLDSYLRFWDIKT  332 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~~  332 (341)
                      ++.+..+|.+.++....
T Consensus       187 ~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  187 IIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTSEEEEEEE-S
T ss_pred             EEEEcCCCeEEEEEECC
Confidence            99999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4.1e-05  Score=62.69  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             cCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          161 ASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      ++..|..++|+|..+ ++..++.++.|+|.|+++...+..+..+          ..+.+++|. -.+.+++..|-.+|.|
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----------~~~wSC~wD-lde~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----------NQIWSCCWD-LDERHVIYAGLQNGMV  260 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----------CCceeeeec-cCCcceeEEeccCceE
Confidence            456789999999877 7888999999999999998777766654          348899995 3446788899999999


Q ss_pred             EEEEcCCCCceeEEEEe
Q 019405          240 RLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~  256 (341)
                      .+||++..+.++..+..
T Consensus       261 lvyD~R~~~~~~~e~~a  277 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVA  277 (463)
T ss_pred             EEEEccCCCchHhhhhh
Confidence            99999987655554443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=0.0019  Score=56.22  Aligned_cols=140  Identities=10%  Similarity=0.059  Sum_probs=80.2

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      ....+.++|++++++++ .+|.-.+|.....+....              +.....+|  .+ .+.+|+-..+++|.++.
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~--------------G~g~~~vw--~~-~n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF--------------GSGLSFVW--SS-RNRYAVLESSSTIKIYK   95 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE--------------EE-SEEEE---T-SSEEEEE-TTS-EEEEE
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc--------------CceeEEEE--ec-CccEEEEECCCeEEEEE
Confidence            46789999999999985 456777887433222211              22455678  55 44577777788999973


Q ss_pred             cCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      --+.+. ...++.. ..+..+-.   |.+|...+.+ .|.+||..+++.+.++...   +|..+.|++++.+++..+.+ 
T Consensus        96 n~~~~~-~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   96 NFKNEV-VKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             TTEE-T-T-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--
T ss_pred             cCcccc-ceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC-
Confidence            222121 2333322 23344432   7777776554 8999999999999999753   48999999999999999866 


Q ss_pred             cEEEEEcC
Q 019405          324 YLRFWDIK  331 (341)
Q Consensus       324 ~v~iwd~~  331 (341)
                      .+.|++.+
T Consensus       166 ~i~il~~~  173 (443)
T PF04053_consen  166 SIYILKYN  173 (443)
T ss_dssp             SEEEEEE-
T ss_pred             eEEEEEec
Confidence            57776644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.98  E-value=0.00033  Score=64.34  Aligned_cols=145  Identities=14%  Similarity=0.120  Sum_probs=96.4

Q ss_pred             CCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-----CCCEEEEEeCCCeEEEEEcCC
Q 019405          173 SEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-----DHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       173 ~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +.++|+.- ...+.|+-.|++.|+.+.....+...        .|.  .+.|..     .......|-.+..+..||.|-
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~  561 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------PVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRL  561 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------cee--EecccccccccCCCceEEEECCCceEEeccCC
Confidence            33444443 34578999999999999888776532        122  231111     233456677788999999986


Q ss_pred             CCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          247 QRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       247 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      ....+..-..    ......|++-+.+| +||+|+.+|.||+||--..+....+++- ..+|.+|..+.||++|++.+..
T Consensus       562 ~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  562 SGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc
Confidence            4322221111    23456777777777 8999999999999995332333445565 7899999999999988777554


Q ss_pred             CcEEEEEc
Q 019405          323 SYLRFWDI  330 (341)
Q Consensus       323 g~v~iwd~  330 (341)
                       .+.+++.
T Consensus       640 -yLlLi~t  646 (794)
T PF08553_consen  640 -YLLLIDT  646 (794)
T ss_pred             -eEEEEEE
Confidence             6777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.98  E-value=3.1e-05  Score=41.57  Aligned_cols=39  Identities=33%  Similarity=0.623  Sum_probs=34.1

Q ss_pred             CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ++++..+..| ...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566677776 78999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.93  E-value=0.0065  Score=48.42  Aligned_cols=199  Identities=13%  Similarity=0.149  Sum_probs=106.8

Q ss_pred             CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  183 (341)
                      +.+.++.+.+..+.       .+++....+.+...+.+         ...++.+....-+..-.+++..++.++++--.+
T Consensus        22 ~e~SGLTy~pd~~t-------LfaV~d~~~~i~els~~---------G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   22 DELSGLTYNPDTGT-------LFAVQDEPGEIYELSLD---------GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             S-EEEEEEETTTTE-------EEEEETTTTEEEEEETT-----------EEEEEE-SS-SSEEEEEE-STTEEEEEETTT
T ss_pred             CCccccEEcCCCCe-------EEEEECCCCEEEEEcCC---------CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCC
Confidence            45778888776552       55555555665544431         124566665555677888888888777766668


Q ss_pred             CeEEEEECCCCc------eeeec--CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCceeEE
Q 019405          184 VEVNVWDLDKCE------KIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMS  253 (341)
Q Consensus       184 ~~v~i~d~~~~~------~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~  253 (341)
                      +.+.++++....      ....+  .....      +...+..++|  ++.++.|+.+-...-..+|.+..  ....+..
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~------~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRADVQKISLGFPNK------GNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             TEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             CcEEEEEEeccccccchhhceEEecccccC------CCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence            899999884321      11111  11111      2245889999  78777777777777777777654  1111211


Q ss_pred             EE--------ecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEecc---c-----cCceeEEEecCCCCEE
Q 019405          254 FD--------FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGK---C-----SGSIRSIARHPTLPII  316 (341)
Q Consensus       254 ~~--------~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l  316 (341)
                      ..        .....+.+++++|.. ++++....+..|..+| .+|+.+..+.-.   +     -..--.|+|.++|++.
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence            11        122357889999854 6667777788899999 567776655422   0     1246789999999665


Q ss_pred             EEEeCCCcEEEE
Q 019405          317 ASCGLDSYLRFW  328 (341)
Q Consensus       317 ~s~~~dg~v~iw  328 (341)
                      +++ +-+..++|
T Consensus       237 Ivs-EpNlfy~f  247 (248)
T PF06977_consen  237 IVS-EPNLFYRF  247 (248)
T ss_dssp             EEE-TTTEEEEE
T ss_pred             EEc-CCceEEEe
Confidence            554 54444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.00018  Score=63.28  Aligned_cols=117  Identities=13%  Similarity=0.228  Sum_probs=83.9

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..+.--+++..+++++.|+.-|.+++|+-..++.. ..+....       ...+..+..  +++..++|.|+..|.|.++
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~-------~~~~~~~~v--s~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGA-------TGITCVRSV--SSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCc-------cceEEEEEe--cchhHhhhhhcCCceEEee
Confidence            34444455667899999999999999997655433 2332211       122333444  7888899999999999999


Q ss_pred             EcCCCCceeEEE-----EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          243 DTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       243 d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      -+.....+-..+     +.|...|++++|++++..+++|...|.|.+-.+..
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            887633222222     12677899999999999999999999999887766

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=2.5e-05  Score=59.27  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=74.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCce
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i  304 (341)
                      -+..+++|+.+|.|++|...........+......|-+ +.--.++.+..+++.||.|+.|++.-.+.+.....|...++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            45688999999999999877322211111222223332 22233556888999999999999998888776666622677


Q ss_pred             eEEEecCCCCEEEEE--eCCCcEEEEEcCC
Q 019405          305 RSIARHPTLPIIASC--GLDSYLRFWDIKT  332 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~--~~dg~v~iwd~~~  332 (341)
                      ..+..+..+++++.+  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            777777778888888  8888899998865

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.82  E-value=0.017  Score=49.69  Aligned_cols=81  Identities=11%  Similarity=0.166  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-----------------C-EEEEEe
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-----------------P-IIASCG  320 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~-~l~s~~  320 (341)
                      ..+.+++.+|.+++.++...-|.|.++|+.++..++.+++..+..+.=+.....+                 . +++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            3578899999999888887789999999999988888887633222211111110                 1 244566


Q ss_pred             CCCcEEEEEcCCCceeeee
Q 019405          321 LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       321 ~dg~v~iwd~~~~~~~~~~  339 (341)
                      .-|.|.||.+++|..+..+
T Consensus       388 rRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             cCCeEEEEecCCCCEEEEE
Confidence            7899999999999988765

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.82  E-value=0.021  Score=53.39  Aligned_cols=255  Identities=12%  Similarity=0.097  Sum_probs=123.1

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc--------cccccceeEEEcccceeE
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE--------SSSRSRTLLTCTTKGKAS  136 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~g~~~  136 (341)
                      +..|..++.++.|.-.|..+|+.+..+.................+.++......        .......++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            346888888999999999999988887653221110000011223333321000        001122677788888887


Q ss_pred             EEEeeecccccc-cCCceEEEEEeecCC---ceEEEEecC--CCCEEEEeeC----------CCeEEEEECCCCceeeec
Q 019405          137 MRSIEVTKVSAE-SSCSTVKSWNVCASG---TIAFSKVDI--SEKFSLFGGK----------GVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       137 i~~~~~~~~~~~-~~~~~v~~~~~~~~~---~i~~~~~~~--~~~~l~~~~~----------d~~v~i~d~~~~~~~~~~  200 (341)
                      -.|.+.++.... ..++.+. |...-..   .-..+.-.|  .+..+++|+.          +|.|+-+|.++|+.++.+
T Consensus       274 ALDA~TGk~~W~fg~~G~vd-l~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVD-LTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCCCcee-eecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            777655442211 1111111 1100000   000111112  2345555542          688999999999999988


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .........           .  .+.+.....++.+. ..--+|.+.+.  +..-.+...    ..+....+.....-..
T Consensus       353 ~~g~p~~~~-----------~--~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~----pd~~g~~r~~~~n~y~  413 (764)
T TIGR03074       353 DPGNPDPTA-----------P--PAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQT----PDQWGGDRTPADEKYS  413 (764)
T ss_pred             ecCCCCccc-----------C--CCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCcc----ccccCCccccCccccc
Confidence            743211000           0  11222222121111 22233333221  111111110    0110111101111235


Q ss_pred             CCEEEEECCCCeEEeEEec-cccC-------ceeEEEecC-CCC---EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIG-KCSG-------SIRSIARHP-TLP---IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~-~~~~-------~i~~~~~~~-~~~---~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|.-.|+++|+....++. ||.-       ...-+.+.. +|+   .++.++.+|.+.++|-++|+.+..+
T Consensus       414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            6678889999998887765 3211       111112222 553   7899999999999999999988753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.0018  Score=56.15  Aligned_cols=156  Identities=13%  Similarity=0.045  Sum_probs=95.3

Q ss_pred             CceEEEEecCCCCEEEEe---eCC-CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCC
Q 019405          163 GTIAFSKVDISEKFSLFG---GKG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH  237 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~---~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~  237 (341)
                      ..+..-+|+|++..++..   ... ..+.++|+.+++....+....          .-...+|  +|+|++|+... .|+
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g----------~~~~P~f--spDG~~l~f~~~rdg  260 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG----------NNGAPAF--SPDGSKLAFSSSRDG  260 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------ccCCccC--CCCCCEEEEEECCCC
Confidence            455666888888776643   222 469999999876655444221          1233467  88998877544 455


Q ss_pred             e--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCC--EEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       238 ~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .  |.++|+....  +..+....+.-+.-.|+|+|+.|+-.+ ..|.  |.+.|.+.+... .+... ...-..-.|+|+
T Consensus       261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~Spd  336 (425)
T COG0823         261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPD  336 (425)
T ss_pred             CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCC
Confidence            4  6666776644  333544333334668999998887554 4454  666677655542 22221 112227789999


Q ss_pred             CCEEEEEeCC-Cc--EEEEEcCCCc
Q 019405          313 LPIIASCGLD-SY--LRFWDIKTRQ  334 (341)
Q Consensus       313 ~~~l~s~~~d-g~--v~iwd~~~~~  334 (341)
                      |.+|+..+.. |.  |.+.|+.++.
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCC
Confidence            9988877643 44  6777776655

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.74  E-value=0.001  Score=61.17  Aligned_cols=139  Identities=19%  Similarity=0.191  Sum_probs=90.7

Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCc-eeeecCCCC
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPP  204 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~  204 (341)
                      ....+.-.|++.++        .|..|+.....+|..++-..     +....+.|-.++.+..||.+-.. .+..-..+ 
T Consensus       502 ~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k-  572 (794)
T PF08553_consen  502 NPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK-  572 (794)
T ss_pred             CCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-
Confidence            34666667776555        78899987655555554321     13345667788899999998532 11111110 


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                        .+  ......+|++-  ..+| +||+|+.+|.||+||-- +.+....+.+-..+|..|..+.||++|++.+ +..|.+
T Consensus       573 --~Y--~~~~~Fs~~aT--t~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlL  643 (794)
T PF08553_consen  573 --QY--SSKNNFSCFAT--TEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLL  643 (794)
T ss_pred             --cc--ccCCCceEEEe--cCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence              01  11234667766  5444 89999999999999943 3443445556678999999999999988765 456777


Q ss_pred             EEC
Q 019405          285 VDI  287 (341)
Q Consensus       285 wd~  287 (341)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=0.00013  Score=39.04  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                      +...+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3566777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.69  E-value=0.037  Score=49.84  Aligned_cols=61  Identities=16%  Similarity=0.104  Sum_probs=37.5

Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      +.|.-+|+.+++. +-..........+. ..-.+.+++.++.+|.++.+|.++|+.+.+++..
T Consensus       441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            4566677777653 22222111111111 1124457778888999999999999999888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00014  Score=65.40  Aligned_cols=107  Identities=9%  Similarity=0.169  Sum_probs=80.3

Q ss_pred             EEEEecCCCCEEEEEeC----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405          219 AAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  294 (341)
                      ..|  +|...++++++.    .|.|.||-- +++ |-..... .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.
T Consensus        21 ~SW--HPsePlfAVA~fS~er~GSVtIfad-tGE-Pqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   21 SSW--HPSEPLFAVASFSPERGGSVTIFAD-TGE-PQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccc--CCCCceeEEEEecCCCCceEEEEec-CCC-CCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            356  677778877653    578888843 333 2222211 1135679999999899999999999999987665544


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ....| ..+|..+.||++|..|+++..=|.|.+|...
T Consensus        96 v~~th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 VVETH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eccCC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            44444 9999999999999999999999999999876

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.00033  Score=64.75  Aligned_cols=102  Identities=20%  Similarity=0.326  Sum_probs=76.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      .+..++.|+..|.+-..|+...-.+...-..-..+|++++|+.+|+.++.|-.+|.|.+||..+++.++.+..+ ..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccc
Confidence            35578889989999999888643332332334579999999999999999999999999999999888877765 45544


Q ss_pred             EE---EecCCCCEEEEEeCCCcEEEEEc
Q 019405          306 SI---ARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       306 ~~---~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ++   .+..++..++++..-|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   44456667888877776  5543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.029  Score=48.37  Aligned_cols=158  Identities=15%  Similarity=0.114  Sum_probs=108.6

Q ss_pred             eEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---CCeEE
Q 019405          165 IAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVR  240 (341)
Q Consensus       165 i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~  240 (341)
                      -..+++++.++.++ ....++.|.+.|..+.+.........          ....+++  +++++.+..+..   ++++.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----------~P~~~~~--~~~~~~vYV~n~~~~~~~vs  143 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----------GPVGLAV--DPDGKYVYVANAGNGNNTVS  143 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----------CCceEEE--CCCCCEEEEEecccCCceEE
Confidence            34667777777444 44456899999977766655544322          2456788  888877777655   68899


Q ss_pred             EEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEe-E----EeccccCceeEEEecCCCC
Q 019405          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~-~----~~~~~~~~i~~~~~~~~~~  314 (341)
                      +.|..+.+. .........+ ..++++|+|..+++.. .++.|.+.|........ .    ...  ...-..+.++|++.
T Consensus       144 vid~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~  219 (381)
T COG3391         144 VIDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGN  219 (381)
T ss_pred             EEeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCC
Confidence            999887664 4444444445 8899999998776665 68899999987665553 1    111  23456789999999


Q ss_pred             EEEEEeCC---CcEEEEEcCCCceeee
Q 019405          315 IIASCGLD---SYLRFWDIKTRQLLSA  338 (341)
Q Consensus       315 ~l~s~~~d---g~v~iwd~~~~~~~~~  338 (341)
                      ++......   +.+...|..++.....
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCCceEEEe
Confidence            65544433   5899999988776654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0027  Score=54.50  Aligned_cols=143  Identities=16%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             CCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-------EEEEEeCCCeEEEEEc
Q 019405          173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-------KFVAGTNDHQVRLYDT  244 (341)
Q Consensus       173 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~l~~~~~d~~i~iwd~  244 (341)
                      +.++|+ ++.....|+-.|++.|+.+.....+..          |+-+.+  .|+.+       .-+.|-.|..|.-||.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~--t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDI--TPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeec--cCCcchhcccccccEEeecCCceEEecc
Confidence            344444 455566788999999998877766542          444455  33321       2345667888999998


Q ss_pred             CCCCc-eeEEEEecC----CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          245 SAQRR-PVMSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       245 ~~~~~-~~~~~~~~~----~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      +-... .+...++|.    ....|.+-..+| +|++|+.+|.|++||--..+....+++- ..+|..+..+.+|.+|+..
T Consensus       412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~T  489 (644)
T KOG2395|consen  412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILAT  489 (644)
T ss_pred             cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEe
Confidence            85332 233333332    234455555555 8999999999999997333334456665 8899999999999988776


Q ss_pred             eCCCcEEEEEc
Q 019405          320 GLDSYLRFWDI  330 (341)
Q Consensus       320 ~~dg~v~iwd~  330 (341)
                      +.. .+.+-++
T Consensus       490 c~t-yLlLi~t  499 (644)
T KOG2395|consen  490 CKT-YLLLIDT  499 (644)
T ss_pred             ccc-EEEEEEE
Confidence            544 5555554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.50  E-value=0.033  Score=44.35  Aligned_cols=170  Identities=12%  Similarity=0.081  Sum_probs=108.0

Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (341)
                      +..+..........+.+..++.++-+.+.-|  .|+.+|+.+++......-+..        ..-..++..   ++.+..
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q  104 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ  104 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence            3444444445567888877788888877766  699999999987766554431        223455552   344555


Q ss_pred             EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc----cCceeEE
Q 019405          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI  307 (341)
Q Consensus       232 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~  307 (341)
                      ..-.++...+||..+.+. +..+... ..=+.++  .++..|+....+..|+++|..+.+....+....    -..++.+
T Consensus       105 LTWk~~~~f~yd~~tl~~-~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKK-IGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EESSSSEEEEEETTTTEE-EEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEecCCeEEEEccccceE-EEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            566889999999998654 6666643 3556676  467778888888899999999888777665431    1246667


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|- +|...|-.=....|..-|..+|+.+..+
T Consensus       181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~i  211 (264)
T PF05096_consen  181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWI  211 (264)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred             EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence            775 6666665556667888899998887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.49  E-value=0.034  Score=44.39  Aligned_cols=213  Identities=12%  Similarity=0.092  Sum_probs=108.3

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +.+-...+..+++.++..   .++++....+.|..++. +|+.++.+...       ..+-.-.+.+...+.        
T Consensus        17 l~g~~~e~SGLTy~pd~~---tLfaV~d~~~~i~els~-~G~vlr~i~l~-------g~~D~EgI~y~g~~~--------   77 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTG---TLFAVQDEPGEIYELSL-DGKVLRRIPLD-------GFGDYEGITYLGNGR--------   77 (248)
T ss_dssp             -TT--S-EEEEEEETTTT---EEEEEETTTTEEEEEET-T--EEEEEE-S-------S-SSEEEEEE-STTE--------
T ss_pred             CCCccCCccccEEcCCCC---eEEEEECCCCEEEEEcC-CCCEEEEEeCC-------CCCCceeEEEECCCE--------
Confidence            444445577888887644   36777888999999997 58888777652       113344455544333        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC---Ccee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK---CEKI  197 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~---~~~~  197 (341)
                      .+++--.++.+.+..+.......  ....+..+..    .....+-.++|++.++.|+.+-......+|.+..   ...+
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~--~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~  155 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSL--DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL  155 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred             EEEEEcCCCcEEEEEEecccccc--chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence            55555457888888874432111  1111222222    2335688999999888887776665666666543   1111


Q ss_pred             eecCC--CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------CCeEEEEE
Q 019405          198 WTAKP--PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAE  266 (341)
Q Consensus       198 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~  266 (341)
                      .....  .......   ..-+.+++++ +..+.+++.+..+..|..+|.. ++ ++..+....         ..--.|+|
T Consensus       156 ~~~~~~~~~~~~~~---~~d~S~l~~~-p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~  229 (248)
T PF06977_consen  156 FVSDDQDLDDDKLF---VRDLSGLSYD-PRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAF  229 (248)
T ss_dssp             EEEE-HHHH-HT-----SS---EEEEE-TTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred             eeccccccccccce---eccccceEEc-CCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEE
Confidence            11000  0000111   1236788886 4566778888888999999944 34 344443322         24567999


Q ss_pred             cCCCceEEEEeCCCCEEEE
Q 019405          267 EPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       267 ~~~~~~l~~g~~dg~i~iw  285 (341)
                      .++|. |+..+.-+..+.|
T Consensus       230 d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  230 DPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -TT---EEEEETTTEEEEE
T ss_pred             CCCCC-EEEEcCCceEEEe
Confidence            99985 4445566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.48  E-value=0.00044  Score=38.96  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      ...|..++|+|...+||.++.||.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999999 66654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.39  E-value=0.057  Score=44.71  Aligned_cols=191  Identities=13%  Similarity=0.068  Sum_probs=103.2

Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      .+--..+.+.-|+..         .+..+.|..  ...+.++..-..+..|+++..  .+.+++.+++.....+......
T Consensus        41 w~DI~~~~i~r~~~~---------~g~~~~~~~--p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          41 WVDILGGRIHRLDPE---------TGKKRVFPS--PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             EEeCCCCeEEEecCC---------cCceEEEEC--CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            333344555555542         234455553  334444444444555555443  3666777655553222221111


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      .    .....+....  .|+|.+.++...           -|.|+.+|. .+. .++.+..+-..-+.++||||++.|+.
T Consensus       108 ~----~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         108 L----PLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             C----CcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEE
Confidence            0    1133455566  677766555333           133444443 222 24444443445568999999988877


Q ss_pred             EeCC-CCEEEEECCC--C----eEEeEEeccccCceeEEEecCCCCEEEEEeCCC-cEEEEEcCCCceeeee
Q 019405          276 GNGS-GDLASVDIRT--G----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~d-g~i~iwd~~~--~----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~  339 (341)
                      .... +.|+-|++..  +    +....+.....+..-.++...+|.+.+++-.+| .|.+|+.+ |+++.++
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            7654 7788887752  2    111111111145556677888888776555554 89999998 8888765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.36  E-value=0.021  Score=49.06  Aligned_cols=238  Identities=10%  Similarity=0.027  Sum_probs=105.1

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +....++|++++.|.-+     ++|.|..+|.+.|.|++....+..-..............++++.|.--.-...+-..-
T Consensus        82 ~~~~~g~vtal~~S~iG-----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             E---S-SEEEEEE-BTS-----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             eeccCCcEeEEecCCCc-----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            33457888888877444     5999999999999999765554432211100001123445555553211110001112


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++|+..|.+.+|.+.-....    .-.+...+..         ...++..       ..|...|.++++........-
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g----~f~v~~~~~~---------~~~~~~i-------~~I~~i~~~~G~~a~At~~~~  216 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNG----RFSVQFAGAT---------TNHDSPI-------LSIIPINADTGESALATISAM  216 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-----EEEEEEEEE-----------SS-----------EEEEEETTT--B-B-BHHHH
T ss_pred             EEEEEeCCCCEEEEEEecCCCC----ceEEEEeecc---------ccCCCce-------EEEEEEECCCCCcccCchhHh
Confidence            6777788888888876421110    0011111110         0011111       123334555444321110000


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEE-----cCCCceEEEEeCC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE-----EPDSFNIYIGNGS  279 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~g~~d  279 (341)
                      .   ...     ..+.     ...++++ ..+..+|++...+.+...+.+ ........+.+     ...+..|++-..+
T Consensus       217 ~---~l~-----~g~~-----i~g~vVv-vSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~  281 (395)
T PF08596_consen  217 Q---GLS-----KGIS-----IPGYVVV-VSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNN  281 (395)
T ss_dssp             H---GGG-----GT---------EEEEE-E-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred             h---ccc-----cCCC-----cCcEEEE-EcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECC
Confidence            0   000     0000     1123333 346789999988766533333 11112233444     2356678888899


Q ss_pred             CCEEEEECCCCeEEeEEeccc---cCceeEEEecCCCCEEEEEeCC
Q 019405          280 GDLASVDIRTGKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      |.+++|.+..-+.+..++-+.   ...+....++++|..++-.+..
T Consensus       282 G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  282 GSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             SEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             CcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence            999999999988887776531   2345667788899877666544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.35  E-value=0.021  Score=38.74  Aligned_cols=102  Identities=11%  Similarity=0.130  Sum_probs=68.4

Q ss_pred             eeEEEEEe-cC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE
Q 019405          216 FTSAAFLS-ID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (341)
Q Consensus       216 v~~~~~~~-~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~  293 (341)
                      |++++++. .. ..+.|++|+.|..||+|+-..   .+..+... +.|++++-... ..++-+..+|+|-+|+-  .+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence            55666541 11 236899999999999998443   46666644 57788777666 46888899999999975  3444


Q ss_pred             eEEeccccCceeEEEecC-C--C-CEEEEEeCCCcEE
Q 019405          294 GCFIGKCSGSIRSIARHP-T--L-PIIASCGLDSYLR  326 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~-~--~-~~l~s~~~dg~v~  326 (341)
                      ...+.  ...+.++++.. +  | +-|++|=.+|.|-
T Consensus        75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            44544  34466666543 3  2 2688888888764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.33  E-value=0.14  Score=47.86  Aligned_cols=287  Identities=14%  Similarity=0.048  Sum_probs=145.6

Q ss_pred             CCccceeecCCCCCceeeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEE
Q 019405            1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD   78 (341)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~   78 (341)
                      .||...+.+......-++++..||.+..+.+... +|...-..  .+  ...++..-.|+.....   .+.+. .|.-..
T Consensus       582 iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~-tg~lsd~Kk~~l--Gt~P~~Lr~f~sk~~t---~vfa~-sdrP~v  654 (1096)
T KOG1897|consen  582 IPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN-TGQLSDRKKVTL--GTQPISLRTFSSKSRT---AVFAL-SDRPTV  654 (1096)
T ss_pred             cchheeeEEeeccceEEEEEcCCceEEEEEEEcc-cceEcccccccc--CCCCcEEEEEeeCCce---EEEEe-CCCCEE
Confidence            3677777777777778899999999987776665 33211111  12  2344444445544431   23333 344445


Q ss_pred             EeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEE
Q 019405           79 ILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW  157 (341)
Q Consensus        79 iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~  157 (341)
                      +|.- +++...+ +..          ..+..++-++...     ....++.+ ..+.+.+..++.-+        .+.+-
T Consensus       655 iY~~-n~kLv~spls~----------kev~~~c~f~s~a-----~~d~l~~~-~~~~l~i~tid~iq--------kl~ir  709 (1096)
T KOG1897|consen  655 IYSS-NGKLVYSPLSL----------KEVNHMCPFNSDA-----YPDSLASA-NGGALTIGTIDEIQ--------KLHIR  709 (1096)
T ss_pred             EEec-CCcEEEeccch----------HHhhhhccccccc-----CCceEEEe-cCCceEEEEecchh--------hccee
Confidence            5543 2222111 111          1111122222211     11123333 34455555544222        11111


Q ss_pred             EeecCCceEEEEecCCCCEEEEeeC-----------C---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          158 NVCASGTIAFSKVDISEKFSLFGGK-----------G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~~l~~~~~-----------d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                      .+.-+.....+++.+....+++.+.           .   ..++++|-.+.+.+...+....+.     ...+.++.|  
T Consensus       710 tvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~--  782 (1096)
T KOG1897|consen  710 TVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKF--  782 (1096)
T ss_pred             eecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeee--
Confidence            1222333444444443333332221           1   136677776665554333322111     123555567  


Q ss_pred             cCC-CCEEEEEeC----------CCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          224 IDD-HRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       224 ~~~-~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ..+ +.++++|..          .|.|.+|.+...+. ++....+  ++.+.++.. -+|+++|.-  ...|++|+..+.
T Consensus       783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~  858 (1096)
T KOG1897|consen  783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTE  858 (1096)
T ss_pred             cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEcccc
Confidence            344 667777653          46788887776332 3333222  234444432 256666543  458999999888


Q ss_pred             eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +.++.-..+ ..++..+...-.|..++.|..-+++.+...+
T Consensus       859 ~eLr~e~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  859 RELRIECNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             ceehhhhcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence            777666665 7788999998899999999877776654443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.018  Score=49.65  Aligned_cols=144  Identities=22%  Similarity=0.187  Sum_probs=92.4

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-------EEEEeeCCCeEEEEECCC-Cc-
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-------FSLFGGKGVEVNVWDLDK-CE-  195 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~v~i~d~~~-~~-  195 (341)
                      .+..+.....+.-.|++.++        .|..|....  .|.-+.+.|+.+       .-+.|-.++.|.-||.+- +. 
T Consensus       348 il~~~~~~~~l~klDIE~GK--------IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGK--------IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             EeeCCCCcCcceeeecccce--------eeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence            44555555667777777555        678888753  477777777542       223466788899999873 22 


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      .+...+.+.   +.  ......|.+-  . ...++++|+.+|.||+||. .+.+....+.+-..+|..+..+.+|++|++
T Consensus       418 kl~~~q~kq---y~--~k~nFsc~aT--T-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  418 KLAVVQSKQ---YS--TKNNFSCFAT--T-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             eeeeeeccc---cc--cccccceeee--c-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence            111111110   00  0122455554  3 4458999999999999997 444445566777789999999999998876


Q ss_pred             EeCCCCEEEEECC
Q 019405          276 GNGSGDLASVDIR  288 (341)
Q Consensus       276 g~~dg~i~iwd~~  288 (341)
                      .+ +..+.+-++.
T Consensus       489 Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  489 TC-KTYLLLIDTL  500 (644)
T ss_pred             ec-ccEEEEEEEe
Confidence            55 5566666653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.32  E-value=0.096  Score=45.63  Aligned_cols=162  Identities=14%  Similarity=-0.001  Sum_probs=78.6

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      +.+.++.|+.+. .|++...||.+++||+. |+....+.... ....+ ....+....+  ..+| .++ -..++.+.+.
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i-~~~~v-~e~~i~~~~~--~~~G-ivv-Lt~~~~~~~v  152 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEI-EEEKV-LECRIFAIWF--YKNG-IVV-LTGNNRFYVV  152 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cceeechhhhc-cccCc-cccccccccc--CCCC-EEE-ECCCCeEEEE
Confidence            688899998754 55566799999999986 33322111110 00000 0011222222  2244 222 2334444443


Q ss_pred             EcCCCCceeEEEEe--------cCC-CeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          243 DTSAQRRPVMSFDF--------RET-PIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       243 d~~~~~~~~~~~~~--------~~~-~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      +-.......+.+..        +.. .... ..++.+....+....++.+.+.+-...+.   +..  .+++..|+.||+
T Consensus       153 ~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~--~~~i~~iavSpn  227 (410)
T PF04841_consen  153 NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS--DGPIIKIAVSPN  227 (410)
T ss_pred             eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC--CCCeEEEEECCC
Confidence            22211100111100        000 0000 12333333444444444555443322111   211  368999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceee
Q 019405          313 LPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      ++++|.-..+|.+.+....-.+.+.
T Consensus       228 g~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  228 GKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             CCEEEEEECCCCEEEEECcccceeE
Confidence            9999999999999888765544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.096  Score=45.22  Aligned_cols=189  Identities=19%  Similarity=0.154  Sum_probs=125.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCceeeecC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~  201 (341)
                      .++....++.+.+.+.....        .+....  -+..-..++++++++.+..+..   ++++.+.|..+.+......
T Consensus        88 vyv~~~~~~~v~vid~~~~~--------~~~~~~--vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNT--------VLGSIP--VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             EEEecCCCCeEEEEcCcccc--------eeeEee--eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            45555556778887744332        111111  1225568899999988777655   6889999998888877743


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCceeE-----EEEecCCCeEEEEEcCCCceEEE
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM-----SFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ...         . -..+++  +|+++.++... .++.|.++|...... .+     ..... ..-..+.++|+|..+++
T Consensus       158 vG~---------~-P~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         158 VGN---------T-PTGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVG-TGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             cCC---------C-cceEEE--CCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccC-CCCceEEECCCCCEEEE
Confidence            322         1 156778  89999766655 788999999776432 21     01112 23356889999987776


Q ss_pred             EeCC---CCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeee
Q 019405          276 GNGS---GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       276 g~~d---g~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~  338 (341)
                      ....   +.+...|..++..... ...... .-..+..+|+|..+.... ..+.+.+-|..+.+....
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            5544   5899999998877665 222212 456789999999877764 447899999888766554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.0092  Score=51.80  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=79.1

Q ss_pred             EEEEecCCCCEEEEe-eCCCe--EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC--eE
Q 019405          166 AFSKVDISEKFSLFG-GKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QV  239 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~-~~d~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~--~i  239 (341)
                      ..-+|+|||+.|+.+ ..||.  |+++|+..++... +......         -..-.|  +|+|+.++..+. .|  .|
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi---------~~~Ps~--spdG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGI---------NTSPSW--SPDGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcc---------ccCccC--CCCCCEEEEEeCCCCCcce
Confidence            345789999887754 44554  6777877665322 3322211         113355  899998887654 34  46


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCC--EEEEECCCCeEEeEEeccccCceeEEEecCCCCEE
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  316 (341)
                      .++|.....  ...+......-..-.|+|+|++|+..+. +|.  |.+.|+.++..++.+..  ........|.+++..+
T Consensus       309 ~~~~~~g~~--~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~ng~~i  384 (425)
T COG0823         309 YLYDLEGSQ--VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAPNGRMI  384 (425)
T ss_pred             EEECCCCCc--eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCCCCceE
Confidence            666666543  3444443333337789999999887664 344  67777766654443432  2233345566666644


Q ss_pred             EE
Q 019405          317 AS  318 (341)
Q Consensus       317 ~s  318 (341)
                      ..
T Consensus       385 ~~  386 (425)
T COG0823         385 MF  386 (425)
T ss_pred             EE
Confidence            43

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.16  E-value=0.052  Score=46.37  Aligned_cols=169  Identities=13%  Similarity=0.093  Sum_probs=88.5

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccC---------CeeeeEEEEEecCCCCEEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT---------PTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~~  232 (341)
                      ...+....|+|+|+.++... ++.|.+++..+++..+--... ......+.         -..-..+.|  +|++++|+.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~  117 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAF  117 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEE--CCCCCEEEE
Confidence            35688899999999999875 568999998777444322221 11100000         012345678  899988887


Q ss_pred             EeCC-Ce-----------------------------------EEEEEcCCCCceeEEEE----ecCCCeEEEEEcCCCce
Q 019405          233 GTND-HQ-----------------------------------VRLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFN  272 (341)
Q Consensus       233 ~~~d-~~-----------------------------------i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~  272 (341)
                      ...| ..                                   +.++|+.+++.......    .....+..+.|.+++..
T Consensus       118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence            5443 22                                   23344443332111111    12234678899999884


Q ss_pred             EEEEe--CCC---CEEEEECCCCeEEeEEeccccCce---eEEEec-CCCC-EEEEEeCCCc--EEEEEcCCCc
Q 019405          273 IYIGN--GSG---DLASVDIRTGKLLGCFIGKCSGSI---RSIARH-PTLP-IIASCGLDSY--LRFWDIKTRQ  334 (341)
Q Consensus       273 l~~g~--~dg---~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~-~l~s~~~dg~--v~iwd~~~~~  334 (341)
                      |+...  .+.   .+.++|..+++....+.....+.|   ....|. +++. +|.....||.  |.+++...+.
T Consensus       198 l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             EEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence            44333  332   367778877654333332223333   245554 5555 5555557775  4455555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0015  Score=36.85  Aligned_cols=35  Identities=11%  Similarity=0.175  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE
Q 019405          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (341)
Q Consensus       258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~  293 (341)
                      ...|..++|+|...+||.++.+|.|.++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            356899999999999999999999999998 56544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.12  Score=42.80  Aligned_cols=214  Identities=15%  Similarity=0.087  Sum_probs=116.8

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++.+--..+.|.-|+..+++. ..+..         .+.+.+....+...        .|+++..  -+.+++.+..   
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~~---------p~~~~~~~~~d~~g--------~Lv~~~~--g~~~~~~~~~---   95 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFPS---------PGGFSSGALIDAGG--------RLIACEH--GVRLLDPDTG---   95 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEEC---------CCCcccceeecCCC--------eEEEEcc--ccEEEeccCC---
Confidence            455555678899998876543 22222         13344455555444        5555543  2333333211   


Q ss_pred             cccCCceEEEEE-eec---CCceEEEEecCCCCEEEEeeC-----------CCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          147 AESSCSTVKSWN-VCA---SGTIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       147 ~~~~~~~v~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~-----------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                           +.+..+. ...   ....+.+.+.|+|.+.+....           -|.|+.+|. .+.....+..+-       
T Consensus        96 -----~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~-------  162 (307)
T COG3386          96 -----GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL-------  162 (307)
T ss_pred             -----ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE-------
Confidence                 1212211 111   123456677788876664332           122333333 344443333321       


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCC--C---C-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC-CEE
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSA--Q---R-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLA  283 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~  283 (341)
                        ..-+.++|  +|+++.|+.+.. .+.|.-|++..  +   . .....+....+..-.++...+|.+.+++-.+| .|.
T Consensus       163 --~~~NGla~--SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~  238 (307)
T COG3386         163 --TIPNGLAF--SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV  238 (307)
T ss_pred             --EecCceEE--CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence              33578899  999987776654 47788887752  1   1 11122222334455677778887775444444 899


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecC-CCCE-EEEEeCC
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPI-IASCGLD  322 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-l~s~~~d  322 (341)
                      .|+.. ++++..+..+ ...+++++|-- +.+. ++|+...
T Consensus       239 ~~~pd-G~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         239 RFNPD-GKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EECCC-CcEEEEEECC-CCCCccceEeCCCcCEEEEEecCC
Confidence            99998 9999998877 57888888854 4444 4444333

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.05  E-value=0.037  Score=50.32  Aligned_cols=147  Identities=12%  Similarity=-0.009  Sum_probs=81.9

Q ss_pred             ceEEEEecCCCCEEEEee------CCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC
Q 019405          164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~------~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  235 (341)
                      .+...+++|+++.++..-      .|.  .|.+++... .. ..+...          .....-.|  +|++..|++...
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g----------~~~t~PsW--spDG~~lw~v~d  416 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG----------HSLTRPSW--SLDADAVWVVVD  416 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC----------CCCCCceE--CCCCCceEEEec
Confidence            466788999999887655      233  455555422 22 222111          11455677  888877776643


Q ss_pred             C------------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE---EECCCCeE-E---eEE
Q 019405          236 D------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF  296 (341)
Q Consensus       236 d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i---wd~~~~~~-~---~~~  296 (341)
                      .            +.+.+.++..++. ..   .....|..+.|||||..++... ++.|++   -....|+. +   ..+
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l  491 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV  491 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence            2            2233333333221 11   2245799999999998887655 477777   44444541 1   112


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      .......+.++.|.+++.++ .+..++...+|.+
T Consensus       492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            22113346889999999855 4444444444543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.04  E-value=0.099  Score=40.52  Aligned_cols=92  Identities=18%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCCEE-EEEeCCCeEEEEE--cCCCC----ceeEEEEe---cCCC-eEEEEEcCCCceEEEEeCCCCEEEE
Q 019405          217 TSAAFLSIDDHRKF-VAGTNDHQVRLYD--TSAQR----RPVMSFDF---RETP-IKAVAEEPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       217 ~~~~~~~~~~~~~l-~~~~~d~~i~iwd--~~~~~----~~~~~~~~---~~~~-v~~~~~~~~~~~l~~g~~dg~i~iw  285 (341)
                      +.++|  +.+.+.+ ++-+.+-.|.-||  ..++.    ..+..++.   .+.. --.++...+|.+.++....++|..+
T Consensus       161 Ngl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  161 NGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             ccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            46778  5555444 4556677787787  44432    11222221   1111 2245666788888888899999999


Q ss_pred             ECCCCeEEeEEeccccCceeEEEecC
Q 019405          286 DIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       286 d~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      |+.+|+.+.+++-+ ...|++++|--
T Consensus       239 dp~tGK~L~eiklP-t~qitsccFgG  263 (310)
T KOG4499|consen  239 DPTTGKILLEIKLP-TPQITSCCFGG  263 (310)
T ss_pred             CCCCCcEEEEEEcC-CCceEEEEecC
Confidence            99999999999988 88999999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.11  Score=41.71  Aligned_cols=165  Identities=7%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..+.++.|+|+.+.|++......-.++=-.+|+.+..++-....        -...+.|  -.++.++++--.++.+.++
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------DpE~Iey--ig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------DPETIEY--IGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--------ChhHeEE--ecCCEEEEEehhcceEEEE
Confidence            34889999999999998887777777766788888887654321        1345667  4567777777788888888


Q ss_pred             EcCCCCcee--E--EE-----EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE---EeEEecc------ccCce
Q 019405          243 DTSAQRRPV--M--SF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGK------CSGSI  304 (341)
Q Consensus       243 d~~~~~~~~--~--~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~------~~~~i  304 (341)
                      .+......+  .  .+     ...+...-.++|.|..+.|+.+=.-.-+.||.......   +.....+      .-..|
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            776543211  0  11     11245667899999998888888777777776653321   1111111      02347


Q ss_pred             eEEEecCC-CCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          305 RSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       305 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      .++.|++. +.+|+-+.+++.+.-.|.. |..+..
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~  269 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIEL  269 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeee
Confidence            77888874 4466666677777777765 444433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.00  E-value=0.083  Score=42.19  Aligned_cols=148  Identities=18%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             ceEEEEecCCCC-EEEEeeCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----
Q 019405          164 TIAFSKVDISEK-FSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----  236 (341)
Q Consensus       164 ~i~~~~~~~~~~-~l~~~~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----  236 (341)
                      ....++++|... -++.+-.-|+ ..++|....+....+...+...       ..-.=.|  +++|.+|...-+|     
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvf--s~dG~~LYATEndfd~~r  139 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVF--SPDGRLLYATENDFDPNR  139 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eeccccc--CCCCcEEEeecCCCCCCC
Confidence            344567777543 3445555554 5688888777665554443221       1122256  8999999886554     


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC------------------CCCEEEEECCCCeEEeEEec
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG------------------SGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------------------dg~i~iwd~~~~~~~~~~~~  298 (341)
                      |.|-+||.+..-+.+-.+..|.-.-..+.+.+||+.++.+..                  .-++.+.|..+|+++.+..-
T Consensus       140 GViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L  219 (366)
T COG3490         140 GVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL  219 (366)
T ss_pred             ceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence            789999998755556677777777788999999999887653                  12355566666766543321


Q ss_pred             c---ccCceeEEEecCCCCEEEEEe
Q 019405          299 K---CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       299 ~---~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      .   +.-.|..++..+||..++.+-
T Consensus       220 p~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         220 PASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             chhhhhcceeeeeeCCCCcEEEEEE
Confidence            1   245788888888887766553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.013  Score=55.21  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=95.6

Q ss_pred             EeecCCceEEEEecCCCCEEEEee--CCCeEEEEECCCCceeee--cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405          158 NVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (341)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  233 (341)
                      .+...-++..+...+|+...++..  .+-.|..||+++-.....  ..................++.|.|.+-. ..+..
T Consensus        96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~  174 (1405)
T KOG3630|consen   96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVD  174 (1405)
T ss_pred             eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhh
Confidence            333344666677777876555433  344789999976322110  1111111112223345667788533322 34566


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec---cccCceeEEEec
Q 019405          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARH  310 (341)
Q Consensus       234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~  310 (341)
                      ..|+.|++..+......+..+. -....++++|+|.|+.+++|...|++.-|... ++....+..   .....|.+|+|-
T Consensus       175 l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             ccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence            7789999887765443334433 33568999999999999999999999988653 443333332   213679999998


Q ss_pred             CCCCEEEE
Q 019405          311 PTLPIIAS  318 (341)
Q Consensus       311 ~~~~~l~s  318 (341)
                      ....+++.
T Consensus       253 ~t~eflvv  260 (1405)
T KOG3630|consen  253 STQEFLVV  260 (1405)
T ss_pred             cceeEEEE
Confidence            87776654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.86  E-value=0.0068  Score=46.42  Aligned_cols=107  Identities=8%  Similarity=-0.030  Sum_probs=66.1

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      -+..+++|+.+|.|.+|+....-..........        ..|.+.--. -.++.+..+++.|+.|+.|++.-.+. +-
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--------e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~-~g  138 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--------ESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKV-LG  138 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhccc--------ccceecccc-ccccceeEEeccCCceeeeccccCce-ee
Confidence            356788999999999998862111111111111        112221110 33556888999999999999987654 44


Q ss_pred             EEEecC-CCeEEEEEcCCCceEEEE--eCCCCEEEEECCC
Q 019405          253 SFDFRE-TPIKAVAEEPDSFNIYIG--NGSGDLASVDIRT  289 (341)
Q Consensus       253 ~~~~~~-~~v~~~~~~~~~~~l~~g--~~dg~i~iwd~~~  289 (341)
                      ....|+ .++.....+..++.++..  +.|..++.|++..
T Consensus       139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            445565 555555555666677766  7777777777653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.0074  Score=56.30  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=71.9

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      .+..++.|+..|.+...|+...-. .-..+..       ...+|++++|  +.+|.+++.|-.+|.|.+||+..++ +++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~-------v~~~Vtsvaf--n~dg~~l~~G~~~G~V~v~D~~~~k-~l~  166 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNER-------VQGPVTSVAF--NQDGSLLLAGLGDGHVTVWDMHRAK-ILK  166 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-hhhcCCc-------cCCcceeeEe--cCCCceeccccCCCcEEEEEccCCc-cee
Confidence            455788899999999988865311 1111111       1267999999  8999999999999999999999865 488


Q ss_pred             EEEecCCCeEEEEE---cCCCceEEEEeCCCC
Q 019405          253 SFDFRETPIKAVAE---EPDSFNIYIGNGSGD  281 (341)
Q Consensus       253 ~~~~~~~~v~~~~~---~~~~~~l~~g~~dg~  281 (341)
                      .+..|..+.+.+-+   ..++..++++...|.
T Consensus       167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             eeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            88888777666543   445567888887776

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.78  E-value=0.33  Score=44.29  Aligned_cols=146  Identities=17%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             CCCEEEEeeCCCe-----EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC------eEEE
Q 019405          173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL  241 (341)
Q Consensus       173 ~~~~l~~~~~d~~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~i  241 (341)
                      +|.+.++||.||.     +-.||.++.+-........       .......+.+    ++.+.++|+.++      ++..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-------~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-------RRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-------ceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence            5778888888864     6667766543211111110       0122233333    677888887554      4677


Q ss_pred             EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-----EEEEECCCCeEEeE--EeccccCceeEEEecCCC
Q 019405          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~  313 (341)
                      ||..+..- .+..+........ ++. -++.+.+.|+.|+.     |..||.++.+....  +... ...+....  -++
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~--~~~  523 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVV--LGG  523 (571)
T ss_pred             EcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEE--ECC
Confidence            87776431 1111111111111 222 25677788887763     78899887765433  2211 22222222  266


Q ss_pred             CEEEEEeCCC-----cEEEEEcCCCc
Q 019405          314 PIIASCGLDS-----YLRFWDIKTRQ  334 (341)
Q Consensus       314 ~~l~s~~~dg-----~v~iwd~~~~~  334 (341)
                      ...+.|+.||     +|..||..+.+
T Consensus       524 ~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  524 KLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEEEecccCccccceeEEcCCCCCc
Confidence            7778888876     56777776643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.72  E-value=0.25  Score=40.45  Aligned_cols=256  Identities=13%  Similarity=0.044  Sum_probs=128.6

Q ss_pred             cCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch
Q 019405            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (341)
Q Consensus         9 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~   88 (341)
                      |+..-.-+++.|.++| +.++++... .+..+.   .  +..++.-+...++..    .|++ -.|+.+.++++..-...
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i---~--~~~~I~ql~vl~~~~----~llv-Lsd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRI---L--KLSSITQLSVLPELN----LLLV-LSDGQLYVYDLDSLEPV   69 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCC-ccceeE---e--ecceEEEEEEecccC----EEEE-EcCCccEEEEchhhccc
Confidence            3444556788999999 777777222 121111   1  222366666666555    3333 34699999998764433


Q ss_pred             heeec-cCCCC--CCCCCCceeeEeeee-ccccccccccceeEEEcccceeEEEEeeecccccccCC-ceEEEEEeecCC
Q 019405           89 VAISN-AGDSG--AQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASG  163 (341)
Q Consensus        89 ~~~~~-~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~-~~v~~~~~~~~~  163 (341)
                      ..... ..+..  ....-........+. ....    .....+.......+.+|.......    .. ...+.+..  ..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~----~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~  139 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH----EGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PD  139 (275)
T ss_pred             cccccccccccccccccccccCCeeEEeecccc----ccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CC
Confidence            31110 00000  000001111222222 1110    111344444455888888765311    11 23444443  46


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc---cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      .+..++|.  ++.++.|..+ ...+.|+.++....-+.......   .......++..+..   +++.+|++-  |..-.
T Consensus       140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~~--~~~g~  211 (275)
T PF00780_consen  140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLCY--DNIGV  211 (275)
T ss_pred             CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEEe--cceEE
Confidence            78888887  5677777665 58889998766544332211110   00001122333333   345565543  33334


Q ss_pred             EEEcCCCCcee-EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405          241 LYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       241 iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      ..|.. ++... ..+... ....++++.  ..+|++-.. +.|.||++.++++++.+...
T Consensus       212 fv~~~-G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  212 FVNKN-GEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEcCC-CCcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            44443 33212 344433 345566663  336666554 56999999999999988754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.68  E-value=0.34  Score=41.43  Aligned_cols=150  Identities=14%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             eEEEEecCCCCEEEEee--CC---CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          165 IAFSKVDISEKFSLFGG--KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~--~d---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      +..+.|.++++.++..-  .+   -.+.+.|..+++...........-+..     .....|....+..+|.....+|.-
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~-----~~~~~~~~~~~~~~l~~s~~~G~~  260 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV-----YDPPHFLGPDGNEFLWISERDGYR  260 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS-----SSEEEE-TTTSSEEEEEEETTSSE
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee-----ecccccccCCCCEEEEEEEcCCCc
Confidence            66778888887444322  22   236677777665443332222111111     123344102334455555577765


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEE-EEeCC----CCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      +||-+.......+.+....-.|.. +.+++++..|+ ++..+    ..|+.-++..+..+..+... .+.-..+.|+|++
T Consensus       261 hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spdg  339 (353)
T PF00930_consen  261 HLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPDG  339 (353)
T ss_dssp             EEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TTS
T ss_pred             EEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCCC
Confidence            555444322224556656666755 67888776554 55543    24666677723333445433 2222689999999


Q ss_pred             CEEEEEe
Q 019405          314 PIIASCG  320 (341)
Q Consensus       314 ~~l~s~~  320 (341)
                      ++++-..
T Consensus       340 ~y~v~~~  346 (353)
T PF00930_consen  340 KYYVDTY  346 (353)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA02713 hypothetical protein; Provisional

Probab=96.56  E-value=0.59  Score=42.66  Aligned_cols=146  Identities=11%  Similarity=0.107  Sum_probs=75.8

Q ss_pred             CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----------
Q 019405          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----------  237 (341)
Q Consensus       173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----------  237 (341)
                      +++..+.||.++     .+..||..+.+=.. +.......      .....+.+    ++...+.|+.++          
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r------~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIAL------SSYGMCVL----DQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCccc------ccccEEEE----CCEEEEEeCCCccccccccccc
Confidence            567777787653     47889987653211 11111000      11122233    677777777542          


Q ss_pred             -------------eEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC------CCEEEEECCC-CeE--Ee
Q 019405          238 -------------QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GKL--LG  294 (341)
Q Consensus       238 -------------~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~-~~~--~~  294 (341)
                                   .+..||..+.+= .+..+....... +++ .-+++..+.|+.+      ..+..||..+ .+.  +.
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                         466777765321 011111111111 122 2256666777654      2467899887 443  34


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEeCCC--cEEEEEcCCCc
Q 019405          295 CFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQ  334 (341)
Q Consensus       295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~  334 (341)
                      .++.. ......+++  ++.+.+.|+.|+  .+..||+.+.+
T Consensus       498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        498 TTESR-LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccCcc-cccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            44332 222222233  778889999888  78888887754

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.46  E-value=0.5  Score=43.06  Aligned_cols=114  Identities=15%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      ...+.-+.-++..++-+....+.|||.+.+....+-.-.        ..+.|..+.|.+.|+++.+++.+..+.|.+|--
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------CCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            334444444555555555668999999887644332221        125599999988899999999999999999853


Q ss_pred             CC----CC----ceeEEE--EecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          245 SA----QR----RPVMSF--DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       245 ~~----~~----~~~~~~--~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      ..    ..    .+++.+  ..++ .+|.+..|.++|.+++.+  ++.+.|+|-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            21    01    123332  2333 579999999999655543  4568888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.41  E-value=0.23  Score=45.14  Aligned_cols=130  Identities=15%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ++...-.....+..|.-..    .-++-+....+.|||...+....+-..       ...+.|..+.|.......     
T Consensus        24 ~~~T~i~~~~li~gss~~k----~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~q-----   87 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKK----IAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQ-----   87 (631)
T ss_pred             EEecCCCCcceEeecccCc----EEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCC-----
Confidence            3333333444444444333    333334455699999987663222221       245889999998765532     


Q ss_pred             ceeEEEcccceeEEEEee-ecccccccCCceEEEEEee--cCCceEEEEecCCCCEEEEeeCCCeEEEEECC
Q 019405          124 RTLLTCTTKGKASMRSIE-VTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD  192 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~-~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~  192 (341)
                       .+++.+..+.+.++.-. ..-...+..-..++..++.  +..+|....|-++|.+++.+  ++.+.|+|-.
T Consensus        88 -siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen   88 -SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             -EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence             77888888888888632 1111111122345555443  34678899999988776644  3578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.31  E-value=0.13  Score=46.96  Aligned_cols=102  Identities=14%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             eeeEEEEEecCCCCEEEEEe------CCC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-------
Q 019405          215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-------  279 (341)
Q Consensus       215 ~v~~~~~~~~~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-------  279 (341)
                      .+...++  +|+++.++...      .|.  .|.+++..  ... ..+... ...+.-.|+|+|..|++....       
T Consensus       351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence            3667778  88999887655      243  45555542  222 223222 247788999998877766432       


Q ss_pred             -----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       280 -----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                           +.+.+.++..++...   .. .+.|..+.|+|||..++... ++.|++
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence                 233333444333322   11 45799999999999877665 467776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.25  E-value=0.73  Score=40.41  Aligned_cols=111  Identities=20%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             EEEecCCCCEEEEe-eCC----CeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---
Q 019405          167 FSKVDISEKFSLFG-GKG----VEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---  237 (341)
Q Consensus       167 ~~~~~~~~~~l~~~-~~d----~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---  237 (341)
                      ...++|++++++.+ +..    ..|+++|+++++.+... ..           .....+.|  .++++.|+....+.   
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-----------~~~~~~~W--~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-----------PKFSSVSW--SDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-----------EESEEEEE--CTTSSEEEEEECSTTTS
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-----------cccceEEE--eCCCCEEEEEEeCcccc
Confidence            56789999988854 222    35999999999766432 21           11223889  77877665544332   


Q ss_pred             --------eEEEEEcCCCCce-eEEEEecCCC--eEEEEEcCCCceEEEEeCC----CCEEEEECCCC
Q 019405          238 --------QVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG  290 (341)
Q Consensus       238 --------~i~iwd~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~  290 (341)
                              .|+.|.+.+.... ...+......  ...+..++++++|+.....    ..+++.|+..+
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence                    3788887765432 3444443333  5678899999988764432    35888888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.22  E-value=0.5  Score=38.20  Aligned_cols=144  Identities=11%  Similarity=0.068  Sum_probs=84.2

Q ss_pred             ceEEEEecCCCCEEEEee---CCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      .+...+++++++.++...   ....++++....  ..... ..           ..+....|  ++++...+....+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g-----------~~l~~PS~--d~~g~~W~v~~~~~~~   89 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG-----------GSLTRPSW--DPDGWVWTVDDGSGGV   89 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC-----------Cccccccc--cCCCCEEEEEcCCCce
Confidence            577889999998877655   333455555432  22221 21           12556677  7787766666666666


Q ss_pred             EEEE-cCCCCceeEEEEec-C-CCeEEEEEcCCCceEEEEe---CCCCEEEEECC---CC------eEEeEEeccccCce
Q 019405          240 RLYD-TSAQRRPVMSFDFR-E-TPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG------KLLGCFIGKCSGSI  304 (341)
Q Consensus       240 ~iwd-~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~---~~------~~~~~~~~~~~~~i  304 (341)
                      +++. ...+.......... . ..|..+++||||..++.-.   .++.|.+--+.   .+      ..+...... ...+
T Consensus        90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v  168 (253)
T PF10647_consen   90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDV  168 (253)
T ss_pred             EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcc
Confidence            6663 23332212222221 1 2899999999998776554   34667766443   22      111112122 4588


Q ss_pred             eEEEecCCCCEEEEEeCCC
Q 019405          305 RSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~~~dg  323 (341)
                      ..+.|.+++.+++.+...+
T Consensus       169 ~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeeecCCCEEEEEeCCCC
Confidence            9999999998776665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.13  E-value=1.3  Score=42.00  Aligned_cols=65  Identities=14%  Similarity=0.142  Sum_probs=40.4

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcCCCC
Q 019405          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       183 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~  248 (341)
                      .+.|.-.|.++|+..+.++....+..+..-+....-+.+. ..+++   .++.++.+|.+.++|.++++
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            3568888999999999887644332222111212222220 12442   78889999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.04  E-value=1.2  Score=41.12  Aligned_cols=155  Identities=12%  Similarity=0.085  Sum_probs=91.6

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceee------ecCC-CCCC----c--cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIW------TAKP-PPKN----S--LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~-~~~~----~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      .++++++. .+.|.||+++......      .+.. +...    .  .....+..|+.+....=-+...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666655 5689999986432211      1110 0000    0  000023335555441113456788999999999


Q ss_pred             EEEcCC-------C----C--------ceeEEEEecCCCeEEEEEc--CCCceEEEEeCCCCEEEEECCC--CeEEeEEe
Q 019405          241 LYDTSA-------Q----R--------RPVMSFDFRETPIKAVAEE--PDSFNIYIGNGSGDLASVDIRT--GKLLGCFI  297 (341)
Q Consensus       241 iwd~~~-------~----~--------~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~  297 (341)
                      +|....       .    .        .|...+. -...+++++++  ...++||+++....|.||-...  .+....-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997532       0    0        1222222 23478999998  7888999999988888875543  11111101


Q ss_pred             ccccCceeEEEecCCC---C---EEEEEeCCCcEEEEEc
Q 019405          298 GKCSGSIRSIARHPTL---P---IIASCGLDSYLRFWDI  330 (341)
Q Consensus       298 ~~~~~~i~~~~~~~~~---~---~l~s~~~dg~v~iwd~  330 (341)
                      ..+...|.+|.|-++.   .   .|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            1125689999998743   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.98  E-value=1.2  Score=40.66  Aligned_cols=225  Identities=15%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             eEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC------CeEEEeeCCCCcchheeeccCCCCC
Q 019405           26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN------GLTDILNPLNGDLRVAISNAGDSGA   99 (341)
Q Consensus        26 i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~   99 (341)
                      ...++..+...+.|.....+..... ...+++- .+    .+.++|+.|      .++..||..+++....-...     
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-----  368 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-----  368 (571)
T ss_pred             cceeEEecCCcCcEeecCCCCcccc-cccEEEE-CC----EEEEEccccCCCcccceEEEecCCCCceeccCCcc-----
Confidence            3555566655566655544433222 2223322 22    368888888      45788888877643321111     


Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCc--eEEE-EecCCCCE
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT--IAFS-KVDISEKF  176 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~--i~~~-~~~~~~~~  176 (341)
                        ....-..+...  .+       ...+.|+.||.-.+-+++.-       |-....|.......  .... ...-++.+
T Consensus       369 --~~R~~~~v~~l--~g-------~iYavGG~dg~~~l~svE~Y-------Dp~~~~W~~va~m~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  369 --TKRSDFGVAVL--DG-------KLYAVGGFDGEKSLNSVECY-------DPVTNKWTPVAPMLTRRSGHGVAVLGGKL  430 (571)
T ss_pred             --CccccceeEEE--CC-------EEEEEeccccccccccEEEe-------cCCCCcccccCCCCcceeeeEEEEECCEE
Confidence              00111111111  11       16777777766554443321       11223343322111  1111 11225777


Q ss_pred             EEEeeCCC------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEEEcC
Q 019405          177 SLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTS  245 (341)
Q Consensus       177 l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~  245 (341)
                      .++||.++      .+..||..+.+-...-+-...       ..... ++.   -++.+.+.|+.|+     +|..||..
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-------R~~~g-~a~---~~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-------RSGFG-VAV---LNGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcccc-------cccce-EEE---ECCEEEEECCccCCCccceEEEEcCC
Confidence            77777544      467888776543221111110       01122 333   2677888888776     36778877


Q ss_pred             CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCC-----EEEEECCCCeE
Q 019405          246 AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKL  292 (341)
Q Consensus       246 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~  292 (341)
                      +.+= .+..+......+....+  ++...++|+.||.     |..||..+.+.
T Consensus       500 ~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  500 TNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             CCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence            6431 11112212222222222  5667778887754     66777766543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.96  E-value=1  Score=39.49  Aligned_cols=241  Identities=10%  Similarity=0.026  Sum_probs=117.4

Q ss_pred             CCCCCceEEEE-ccC----CeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc--
Q 019405           61 DSQNDPLLAVA-RKN----GLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--  132 (341)
Q Consensus        61 ~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  132 (341)
                      .+|++++||.+ +..    ..|+++|+++++.+... ..          .....+.|.+.+..       .+.+...+  
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W~~d~~~-------~~y~~~~~~~  193 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSWSDDGKG-------FFYTRFDEDQ  193 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEECTTSSE-------EEEEECSTTT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEEeCCCCE-------EEEEEeCccc
Confidence            35556687764 333    34999999998765432 21          11112455544331       23333222  


Q ss_pred             --------ceeEEEEeeecccccccCCceEEEEEeecCCc-eEEEEecCCCCEEEEeeC---C-CeEEEEECCCC----c
Q 019405          133 --------GKASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGGK---G-VEVNVWDLDKC----E  195 (341)
Q Consensus       133 --------g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---d-~~v~i~d~~~~----~  195 (341)
                              ..+..|.+....      ..-..+|....... ...+..++++++++....   + ..+.+.|+..+    .
T Consensus       194 ~~~~~~~~~~v~~~~~gt~~------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~  267 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTPQ------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA  267 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-G------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred             ccccCCCCcEEEEEECCCCh------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence                    223444432221      11245665544444 667888999998775332   2 45888888764    1


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCC
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS  270 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~  270 (341)
                      ....+....        ......+..  . ++.+++...   .++.|...++.....  ....+..+...+.-..+...+
T Consensus       268 ~~~~l~~~~--------~~~~~~v~~--~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~  336 (414)
T PF02897_consen  268 KPKLLSPRE--------DGVEYYVDH--H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK  336 (414)
T ss_dssp             SEEEEEESS--------SS-EEEEEE--E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET
T ss_pred             CcEEEeCCC--------CceEEEEEc--c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC
Confidence            122221111        011223333  2 333443332   235677777776542  122444455533333333334


Q ss_pred             ceEEE-EeCCC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCE--EEEEeC--CCcEEEEEcCCCce
Q 019405          271 FNIYI-GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI--IASCGL--DSYLRFWDIKTRQL  335 (341)
Q Consensus       271 ~~l~~-g~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~s~~~--dg~v~iwd~~~~~~  335 (341)
                      .+|+. ...++  .|+++++..+.....+.....+.|..+...+++..  +...|.  -+++..||+.+++.
T Consensus       337 ~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  337 DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            44544 44443  48899998455555555443556777776666663  223332  25788899998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.96  E-value=0.0059  Score=55.94  Aligned_cols=147  Identities=16%  Similarity=0.137  Sum_probs=86.1

Q ss_pred             CeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405          184 VEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (341)
Q Consensus       184 ~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (341)
                      |.+.+||+.  .|+....+..+....++    ..+.-+.|+| -++..++..+-.++.|++.......+  ..+.+|...
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~g----s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~  226 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYG----SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQR  226 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCC----CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCC
Confidence            578889876  34433322222211111    2234444432 34556777777888998877765332  233446555


Q ss_pred             eEEEE-----------EcCCCceEEEEeCCCCEEEEECC-----CCeEEeEEeccccCceeEEEecCCC---------CE
Q 019405          261 IKAVA-----------EEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIGKCSGSIRSIARHPTL---------PI  315 (341)
Q Consensus       261 v~~~~-----------~~~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~~~~~~i~~~~~~~~~---------~~  315 (341)
                      +..++           .||||..++.++.||.++.|.+.     .-+++..++.|...+-.|.-++.+.         .+
T Consensus       227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~  306 (1283)
T KOG1916|consen  227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVL  306 (1283)
T ss_pred             cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEE
Confidence            54433           58999999999999998877653     3456667777633443333344321         13


Q ss_pred             EEEEe-CCCcEEEEEcCCCcee
Q 019405          316 IASCG-LDSYLRFWDIKTRQLL  336 (341)
Q Consensus       316 l~s~~-~dg~v~iwd~~~~~~~  336 (341)
                      +++++ .+..+++|....-+|+
T Consensus       307 ~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  307 RITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEecccCCcceeEeeccchhhh
Confidence            44444 4567999998887776

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.95  E-value=0.23  Score=46.33  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=51.5

Q ss_pred             CeEEEEEcCCCceEEEEeCCCCEEEEECCC---------CeE--E-eEE-------eccccCceeEEEecCCC---CEEE
Q 019405          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKL--L-GCF-------IGKCSGSIRSIARHPTL---PIIA  317 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~--~-~~~-------~~~~~~~i~~~~~~~~~---~~l~  317 (341)
                      .|..+.++|+|++|+..+..|...+.=.+.         |+.  . +++       ..+....|..+.|+|.+   ..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            578899999999999888766544332221         111  1 111       11224589999999964   6888


Q ss_pred             EEeCCCcEEEEEcCCCc
Q 019405          318 SCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~  334 (341)
                      .-..|+.+|+||+...+
T Consensus       166 vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEecCCEEEEEecCCCC
Confidence            99999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.83  E-value=0.86  Score=39.21  Aligned_cols=144  Identities=13%  Similarity=0.037  Sum_probs=76.3

Q ss_pred             ceEEEEecCCCCEEEEee-----------CCC-eEEEEECCC--Cc--eeeecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405          164 TIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~-----------~d~-~v~i~d~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (341)
                      ....++|+++|+++++-.           ..+ .|.+++-.+  ++  ....+....         .....+++  .+++
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~--~~~G   83 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---------SMVTGLAV--AVGG   83 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---------CCccceeE--ecCC
Confidence            445778889988777642           223 677776432  22  112222211         22566787  6677


Q ss_pred             CEEEEEeCCCeEEEEEcCCC-----Cc--eeEEEEe----cCCCeEEEEEcCCCceEEEEeC------------------
Q 019405          228 RKFVAGTNDHQVRLYDTSAQ-----RR--PVMSFDF----RETPIKAVAEEPDSFNIYIGNG------------------  278 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~-----~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~------------------  278 (341)
                       ++ +++.....++.|....     +.  .+..+..    +......++|.|+|.+.++-+.                  
T Consensus        84 -ly-V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        84 -VY-VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             -EE-EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence             44 4444433334354321     11  1111211    1234678999999976554331                  


Q ss_pred             -CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          279 -SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       279 -dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                       .|.|.-+|...++.. .+... -.....++|+|+|.++++-..+
T Consensus       162 ~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       162 LGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEEEEccCC
Confidence             134666666655432 22222 2345789999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.81  E-value=0.5  Score=36.84  Aligned_cols=97  Identities=11%  Similarity=0.002  Sum_probs=62.7

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC-----ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-----TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                      ....-+.+.++.-|+.+...   +.-.++-.++++....     .-..++++.+|++.++.-..++|...|..+|+.+.+
T Consensus       172 fY~iDsln~~V~a~dyd~~t---G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e  248 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPT---GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE  248 (310)
T ss_pred             EEEEccCceEEeeeecCCCc---ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence            55566667777777754332   1122233345544321     122345566889999999999999999999999999


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      +..+.         ..+++++|- .++-..+++.+
T Consensus       249 iklPt---------~qitsccFg-Gkn~d~~yvT~  273 (310)
T KOG4499|consen  249 IKLPT---------PQITSCCFG-GKNLDILYVTT  273 (310)
T ss_pred             EEcCC---------CceEEEEec-CCCccEEEEEe
Confidence            88775         449999994 34444555443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=95.78  E-value=2.2  Score=41.90  Aligned_cols=75  Identities=21%  Similarity=0.392  Sum_probs=40.4

Q ss_pred             ceeecCCCCC---------ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC
Q 019405            5 TTLECPGCPP---------LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG   75 (341)
Q Consensus         5 ~~~~~~~~~~---------~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg   75 (341)
                      ..++||.|..         --.++..+||.+.+=+..        .+.+.-......+++..+.......-++|..--||
T Consensus       348 R~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN--------yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg  419 (1899)
T KOG4659|consen  348 RDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN--------YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG  419 (1899)
T ss_pred             ccccCCCCCCccccceeeceeeEEEcCCCcEEEccch--------heeeecCCCceEEEEEecCCCccceeEEEecCcCc
Confidence            3488999965         125677889988653322        22222122222233333332222233567777788


Q ss_pred             eEEEeeCCCCcc
Q 019405           76 LTDILNPLNGDL   87 (341)
Q Consensus        76 ~i~iw~~~~~~~   87 (341)
                      ++.|=|..+.+.
T Consensus       420 tlyvSdp~s~qv  431 (1899)
T KOG4659|consen  420 TLYVSDPLSKQV  431 (1899)
T ss_pred             eEEecCCCcceE
Confidence            888887765443

>PHA02713 hypothetical protein; Provisional

Probab=95.77  E-value=0.89  Score=41.54  Aligned_cols=72  Identities=8%  Similarity=0.047  Sum_probs=42.8

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCC-CC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--CEEEEECCCCeEEeE
Q 019405          226 DHRKFVAGTND------HQVRLYDTSA-QR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGC  295 (341)
Q Consensus       226 ~~~~l~~~~~d------~~i~iwd~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~  295 (341)
                      ++...+.|+.+      ..+..||..+ .+ ..+..+.........+.+  ++++.++|+.++  .+..||+.+.+....
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence            56677777654      2467888876 22 122223222222222333  677888999888  788888888776554


Q ss_pred             Eecc
Q 019405          296 FIGK  299 (341)
Q Consensus       296 ~~~~  299 (341)
                      ...|
T Consensus       541 ~~~~  544 (557)
T PHA02713        541 CHQH  544 (557)
T ss_pred             hhhc
Confidence            4444

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.76  E-value=0.85  Score=40.60  Aligned_cols=120  Identities=12%  Similarity=-0.008  Sum_probs=70.7

Q ss_pred             ceEEEEecCC----CCEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          164 TIAFSKVDIS----EKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       164 ~i~~~~~~~~----~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      .|..+.|.|-    ...+.+.-....|.+|-+..     .+.+..-..+-.+.+    +---..+.|  +|....|++-.
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----pvLpQGCVW--HPk~~iL~VLT  131 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----PVLPQGCVW--HPKKAILTVLT  131 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----ccCCCcccc--cCCCceEEEEe
Confidence            5788899873    33444456667899998752     222211111111111    112345678  67787877766


Q ss_pred             CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCC
Q 019405          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT  289 (341)
Q Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~  289 (341)
                      ....-.+++++.....++.--...+.|.|.+|.+||+.|+++-. .=.-+|||-..
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            65555667776544434332235578999999999977765543 33468888543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.75  E-value=1.1  Score=38.16  Aligned_cols=193  Identities=13%  Similarity=0.084  Sum_probs=91.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .|+.+..+|.-.+|.++...       +.+....-..+.......++++.+.++..-.+..|+-.|+++.+....+..+.
T Consensus        50 llF~s~~dg~~nly~lDL~t-------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~  122 (386)
T PF14583_consen   50 LLFASDFDGNRNLYLLDLAT-------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD  122 (386)
T ss_dssp             EEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred             EEEEeccCCCcceEEEEccc-------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence            66777778777777765432       22222221111122234556777887765556689999999877654444432


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeC----------------------CCeEEEEEcCCCCceeEEEEecCCCeE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------------------DHQVRLYDTSAQRRPVMSFDFRETPIK  262 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~  262 (341)
                               .++....|..+.++.+++-.-.                      .+.|...|+.+++  ...+......+.
T Consensus       123 ---------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlg  191 (386)
T PF14583_consen  123 ---------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLG  191 (386)
T ss_dssp             ---------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EE
T ss_pred             ---------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCcccc
Confidence                     4455556643556665543211                      1235666777765  344444556788


Q ss_pred             EEEEcCCCceEEEEeCCCC-----EEEEECCC-CeEEeEEeccc-cCceeEEEecCCCCEEEEE-----eCCCcEEEEEc
Q 019405          263 AVAEEPDSFNIYIGNGSGD-----LASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIASC-----GLDSYLRFWDI  330 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~dg~-----i~iwd~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~-----~~dg~v~iwd~  330 (341)
                      -+.|+|....+++=+.+|-     -+||-+++ +.-...+..+. ...+..=-|.|||..|.--     +.+..|.-+|+
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~  271 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP  271 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence            8999997766665544321     35664432 22222222221 2234445688888855432     23446777778


Q ss_pred             CCCce
Q 019405          331 KTRQL  335 (341)
Q Consensus       331 ~~~~~  335 (341)
                      .+++.
T Consensus       272 ~t~~~  276 (386)
T PF14583_consen  272 DTGER  276 (386)
T ss_dssp             TT--E
T ss_pred             CCCCc
Confidence            77654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.48  Score=40.70  Aligned_cols=136  Identities=10%  Similarity=0.082  Sum_probs=83.8

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC-CC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~  203 (341)
                      ..+.+...|...=|-+...      .+.....++....++|.++.|++|.+.+|+--.+++|.+++....+...... .+
T Consensus        35 kqlfavrSggatgvvvkgp------ndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c  108 (657)
T KOG2377|consen   35 KQLFAVRSGGATGVVVKGP------NDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC  108 (657)
T ss_pred             ceEEEEecCCeeEEEEeCC------CCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence            3444444555555554322      2334556677778899999999999999999999999999974322221111 11


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g  276 (341)
                      ..      ....|....|  ..+ .-+|..... -+-+|-....++.++..+.|+..|.=..|.++.+.++.+
T Consensus       109 k~------k~~~IlGF~W--~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  109 KT------KNANILGFCW--TSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             cc------CcceeEEEEE--ecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            11      1133777788  333 445555433 467777665554466666677777777888877654433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.65  E-value=0.98  Score=42.31  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCC--C--------ce---eeecCCCCCCccCccCCeeeeEEEEEec-CCCCE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDK--C--------EK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHRK  229 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~--------~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  229 (341)
                      .|..+.++|+|.+++..|..|. .|-.+..  +        +.   .+.+.. ....+.......|..+.|+|. .++..
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhccCCCCceEEEEEEcCCCCCCCe
Confidence            5788999999999999888764 4444321  1        11   011110 001111223356899999653 24678


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFD  255 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~  255 (341)
                      |++-..|+++|+||+.....|.+.+.
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEEE
Confidence            88888999999999987665555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.53  E-value=0.079  Score=28.96  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             CceeEEEecCCCC---EEEEEeCCCcEEEEEcCCC
Q 019405          302 GSIRSIARHPTLP---IIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       302 ~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~~  333 (341)
                      +.|.++.|+|+..   +|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998544   8888888899999999953

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.15  E-value=0.47  Score=43.73  Aligned_cols=160  Identities=14%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             eeEEEcccceeEEEEeeeccccc---------------ccCCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEE
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSA---------------ESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVN  187 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~  187 (341)
                      .++. +..+.|.||+.+......               ...++.+..|.  ....|..+.+..  +...|+.|..||.|.
T Consensus        51 ~LFi-A~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p--~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   51 LLFI-AYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP--FPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             EEEE-EECCEEEEEecCCcccccccccccccccCccccccccccccCCC--CCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            4444 347889999875433211               11222222222  223455555432  567889999999999


Q ss_pred             EEECCCCc-eeeec---------CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC--CceeEEEE
Q 019405          188 VWDLDKCE-KIWTA---------KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFD  255 (341)
Q Consensus       188 i~d~~~~~-~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~  255 (341)
                      +|.+++-. .+...         .......+.......+.+++++.....++||++++...|.||-....  +.....-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            99774310 00000         00001112233345678888832267788888888888888865542  11111111


Q ss_pred             ecCCCeEEEEEcCCC-----c-eEEEEeCCCCEEEEEC
Q 019405          256 FRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDI  287 (341)
Q Consensus       256 ~~~~~v~~~~~~~~~-----~-~l~~g~~dg~i~iwd~  287 (341)
                      .+..-|.+|+|-++.     . .+++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            245568889886533     2 7778888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.08  E-value=1.9  Score=36.82  Aligned_cols=148  Identities=10%  Similarity=0.125  Sum_probs=86.2

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE--EEEEe-CC---CeEEEEEcC
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK--FVAGT-ND---HQVRLYDTS  245 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~-~d---~~i~iwd~~  245 (341)
                      |...+++...+++-+.+||+. |+.+..+.....+..     .-...+.+    +++.  |+.++ .+   .+|++|.+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-----Dvrygf~l----~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-----DVRYGFPL----NGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-----EEEEEEEE----TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-----eeecceec----CCceEEEEEEecCcCCCCeEEEEEec
Confidence            456677777888899999995 666666653322111     11222222    3332  33433 32   479999886


Q ss_pred             CCCceeEEEEe-------cCCCeEEEEE--cC-CC-ceEEEEeCCCCEEEEECC---CC----eEEeEEeccccCceeEE
Q 019405          246 AQRRPVMSFDF-------RETPIKAVAE--EP-DS-FNIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIRSI  307 (341)
Q Consensus       246 ~~~~~~~~~~~-------~~~~v~~~~~--~~-~~-~~l~~g~~dg~i~iwd~~---~~----~~~~~~~~~~~~~i~~~  307 (341)
                      .....+..+..       ....+..+++  +| +| .+.++...+|.+..|-+.   ++    +++++|...  ..+..+
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGC  213 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGC  213 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEE
Confidence            43333443322       1123566666  34 34 356677788988877664   33    567888763  578899


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcC
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +......+|..+-+|--|.-|+.+
T Consensus       214 VVDDe~g~LYvgEE~~GIW~y~Ae  237 (381)
T PF02333_consen  214 VVDDETGRLYVGEEDVGIWRYDAE  237 (381)
T ss_dssp             EEETTTTEEEEEETTTEEEEEESS
T ss_pred             EEecccCCEEEecCccEEEEEecC
Confidence            998888899999888777777765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.01  E-value=0.96  Score=40.30  Aligned_cols=124  Identities=11%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      ..|.-++|++-...+-+-|++......|.||.+.-     ++.+..-...-...+.   -=.-+..|.+...        
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p---vLpQGCVWHPk~~--------  125 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP---VLPQGCVWHPKKA--------  125 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc---cCCCcccccCCCc--------
Confidence            56788888888776666677778889999998852     2222211111100000   0001233444333        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD  192 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~  192 (341)
                      .|..-.....-.+.++...        +.--.-++...+.|.|.+|.+||+.|+++-. .=.-++||-.
T Consensus       126 iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4444444444445555432        2333446777899999999999998776533 3345677754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.96  E-value=1.6  Score=35.40  Aligned_cols=177  Identities=7%  Similarity=0.018  Sum_probs=99.3

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      ...+..++|+++..    .|.+......-.|+=..+|+.+.++..-.       -...-.+.+...+.        ..++
T Consensus        85 ~~nvS~LTynp~~r----tLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~--------fvi~  145 (316)
T COG3204          85 TANVSSLTYNPDTR----TLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQ--------FVIV  145 (316)
T ss_pred             cccccceeeCCCcc----eEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCE--------EEEE
Confidence            34477888888777    56666666666676666788888876521       01111234433333        4555


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC-
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN-  206 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-  206 (341)
                      --.+..+.++.++.........+..+.+=...+ ......++|+|..+.|..+=..+-+.||.+............... 
T Consensus       146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence            555667777766543221111111222211112 345678999999988888877777888876533211111111100 


Q ss_pred             -ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          207 -SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       207 -~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                       ..++ .-.-+.++.|. .+.+.+++-+.+++.+.-.|...
T Consensus       226 ~~~~~-f~~DvSgl~~~-~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         226 ADRDL-FVLDVSGLEFN-AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cccce-Eeeccccceec-CCCCcEEEEecCCceEEEEecCC
Confidence             0000 01336777885 35667788888888888888775

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.92  E-value=0.5  Score=40.89  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             EEEecCCCCEEEEeeCCCeEEE---EECC-CC----ceeeecCCCCCCccCccCCeeeeEEEEEec---------CCCCE
Q 019405          167 FSKVDISEKFSLFGGKGVEVNV---WDLD-KC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRK  229 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i---~d~~-~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~  229 (341)
                      .++.+|+++.|+.+..+..+.+   |+.. .+    .........-...    ....|+++.+.|-         ++...
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~----~~e~ITsi~clpl~s~~~s~~~~dw~~   81 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDE----PGECITSILCLPLSSQKRSTGGPDWTC   81 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCC----CCCEEEEEEEEEeecccccCCCCCcEE
Confidence            4677899999999887766555   5331 11    1222211111110    1145888777653         56678


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  267 (341)
                      +++|..+|.|++|.... .. +..-..|..+|..+...
T Consensus        82 I~VG~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   82 IAVGTSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEEecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence            99999999999998753 43 44444577777777763

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.88  E-value=0.14  Score=28.05  Aligned_cols=31  Identities=16%  Similarity=0.247  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCC---ceEEEEeCCCCEEEEECCC
Q 019405          259 TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       259 ~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~  289 (341)
                      +.+.++.|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   4777777779999999995

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.77  E-value=4  Score=38.94  Aligned_cols=294  Identities=11%  Similarity=0.029  Sum_probs=132.9

Q ss_pred             CCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCC--CCCceEEEEccCCeEEEeeC-CCCc
Q 019405           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDS--QNDPLLAVARKNGLTDILNP-LNGD   86 (341)
Q Consensus        10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~l~~~~~dg~i~iw~~-~~~~   86 (341)
                      -.+....++.+..++.+-...+.+.  +..+.  .-...+..+.|+.+++-+.  ...+++++|..+..+.+--. .+..
T Consensus       495 ~~~n~sqVvvA~~~~~l~y~~i~~~--~l~e~--~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~  570 (1096)
T KOG1897|consen  495 VSANASQVVVAGGGLALFYLEIEDG--GLREV--SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI  570 (1096)
T ss_pred             EeecceEEEEecCccEEEEEEeecc--ceeee--eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence            3344444555555555555555554  32222  1122456777888886532  23457888988777555432 2322


Q ss_pred             chheeec-cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405           87 LRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (341)
Q Consensus        87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i  165 (341)
                      .+..... ...     -...+.-..+-....        +|+.+..||.+..+.++.....- ++.   +.-.. ...++
T Consensus       571 ~~~~~~l~~~~-----iPRSIl~~~~e~d~~--------yLlvalgdG~l~~fv~d~~tg~l-sd~---Kk~~l-Gt~P~  632 (1096)
T KOG1897|consen  571 LITHEQLSGEI-----IPRSILLTTFEGDIH--------YLLVALGDGALLYFVLDINTGQL-SDR---KKVTL-GTQPI  632 (1096)
T ss_pred             eeeeeccCCCc-----cchheeeEEeeccce--------EEEEEcCCceEEEEEEEcccceE-ccc---ccccc-CCCCc
Confidence            2221111 000     112233222222122        89999999999877765432110 000   00000 01233


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE-EEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA-AFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      .--.|+..+..-+.+..|.-..+|.-+ ++....--..+          .+..+ .|..+.-...++++ ..+.+++.-+
T Consensus       633 ~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k----------ev~~~c~f~s~a~~d~l~~~-~~~~l~i~ti  700 (1096)
T KOG1897|consen  633 SLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK----------EVNHMCPFNSDAYPDSLASA-NGGALTIGTI  700 (1096)
T ss_pred             EEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH----------HhhhhcccccccCCceEEEe-cCCceEEEEe
Confidence            333333333222222333344444332 22222111100          01111 12101112334444 3456777766


Q ss_pred             CCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCC--------------CCEEEEECCCCeEEeEEeccccC---ceeE
Q 019405          245 SAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGCFIGKCSG---SIRS  306 (341)
Q Consensus       245 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------------g~i~iwd~~~~~~~~~~~~~~~~---~i~~  306 (341)
                      ..-+ ..+++...+ .....+++.+....+.+.+..              ..++++|-.+.+.+...+-....   .|.+
T Consensus       701 d~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s  779 (1096)
T KOG1897|consen  701 DEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIIS  779 (1096)
T ss_pred             cchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeee
Confidence            5422 223444333 345667776644444443321              13777787777665443322112   3555


Q ss_pred             EEecCC-CCEEEEEe----------CCCcEEEEEcCCCceeee
Q 019405          307 IARHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       307 ~~~~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~~~  338 (341)
                      +.|..| +.+++.|.          ..|.|.+|.+..++.++.
T Consensus       780 ~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~  822 (1096)
T KOG1897|consen  780 CKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL  822 (1096)
T ss_pred             eeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence            558877 55666664          457888888877444443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.70  E-value=1.8  Score=34.77  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +...-.-.++...+||..+.+.+.++.-..        ++  ..++.    ++..|+.+.....++++|..+.+. ...+
T Consensus       101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--------EG--WGLt~----dg~~Li~SDGS~~L~~~dP~~f~~-~~~i  165 (264)
T PF05096_consen  101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--------EG--WGLTS----DGKRLIMSDGSSRLYFLDPETFKE-VRTI  165 (264)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEE-SS--------S----EEEE----CSSCEEEE-SSSEEEEE-TTT-SE-EEEE
T ss_pred             EEEEEEecCCeEEEEccccceEEEEEecCC--------cc--eEEEc----CCCEEEEECCccceEEECCcccce-EEEE
Confidence            333344567899999999988888776542        13  34554    677777777778999999887653 4433


Q ss_pred             Ee--cCC---CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--------------ccCceeEEEecCCCCE
Q 019405          255 DF--RET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPI  315 (341)
Q Consensus       255 ~~--~~~---~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~  315 (341)
                      .-  ...   .++-+.|- +|...|=.-....|...|..+|+.+..+...              ..+-.+.+|+.|....
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            32  222   34556664 6767776777888999999999987766311              0246889999997765


Q ss_pred             EEEEe
Q 019405          316 IASCG  320 (341)
Q Consensus       316 l~s~~  320 (341)
                      |...+
T Consensus       245 l~vTG  249 (264)
T PF05096_consen  245 LFVTG  249 (264)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.63  E-value=2  Score=35.67  Aligned_cols=104  Identities=14%  Similarity=0.085  Sum_probs=56.3

Q ss_pred             eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC-CCCe
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGK  291 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~  291 (341)
                      ..+..+..  .+++.+++++..-....-||--...  -+.. +.-...|.++.|.|++.+.+++ ..|.|+.=+. ...+
T Consensus       145 gs~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  145 GSINDITR--SSDGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             --EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             ceeEeEEE--CCCCcEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            44677766  7899998888766666677744311  1111 2245689999999998776654 7888888772 2222


Q ss_pred             EEeE--Eec-cccCceeEEEecCCCCEEEEEeCC
Q 019405          292 LLGC--FIG-KCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       292 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      .-..  ... ...-.+..++|.+++...++|+..
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            2111  111 112348899999998887766544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.62  E-value=2.8  Score=36.53  Aligned_cols=292  Identities=9%  Similarity=-0.043  Sum_probs=134.6

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEecc-CCCCCceEEEEccCCeEEEeeCCC--Cc----
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID-DSQNDPLLAVARKNGLTDILNPLN--GD----   86 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~l~~~~~dg~i~iw~~~~--~~----   86 (341)
                      .-.++.|+..|.+++++..........++... .-..+|.-+....- .......||+ -.-.++.||.+..  |.    
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            35789999999999999865421111222121 23456666654432 2222234554 5578899998732  11    


Q ss_pred             ---chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC
Q 019405           87 ---LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (341)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~  163 (341)
                         .+..+..|.-      ......++.-+-.+.   .....++.=+.||.+.+++-+          ..........--
T Consensus       115 ~~~~L~~~yeh~l------~~~a~nm~~G~Fgg~---~~~~~IcVQS~DG~L~~feqe----------~~~f~~~lp~~l  175 (418)
T PF14727_consen  115 NQYQLELIYEHSL------QRTAYNMCCGPFGGV---KGRDFICVQSMDGSLSFFEQE----------SFAFSRFLPDFL  175 (418)
T ss_pred             cEEEEEEEEEEec------ccceeEEEEEECCCC---CCceEEEEEecCceEEEEeCC----------cEEEEEEcCCCC
Confidence               1111111110      011111221111110   012267777888888888632          222111111111


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-----------cCCCCC--CccCccCCeeeeEEEEEe-cCCCCE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-----------AKPPPK--NSLGIFTPTWFTSAAFLS-IDDHRK  229 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----------~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~  229 (341)
                      ---.+.+.+....+++++.+..|..|....-.....           ....+.  ......--..+..+.... +.....
T Consensus       176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~  255 (418)
T PF14727_consen  176 LPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD  255 (418)
T ss_pred             CCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce
Confidence            112456677778888888888888887632110000           000000  000000012233333321 112223


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc------CCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccC
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE------PDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~------~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      +++-+ .+++.+.+... . .....+..-.+.....|.      |+. ..+++++.++.+.||.=  .+++...+.. ..
T Consensus       256 IvvLg-er~Lf~l~~~G-~-l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~-~~  329 (418)
T PF14727_consen  256 IVVLG-ERSLFCLKDNG-S-LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLP-HV  329 (418)
T ss_pred             EEEEe-cceEEEEcCCC-e-EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCC-CC
Confidence            33322 44566665542 2 122222211222222221      221 25888999999999853  4454444433 23


Q ss_pred             ce--eEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          303 SI--RSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       303 ~i--~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +|  .-..|..-...|++-+.+|.+.+-=+-|
T Consensus       330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            33  2222333445888889999988765544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.54  E-value=1.1  Score=39.31  Aligned_cols=143  Identities=14%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             CCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-------CEEEEEeCCCeEEEEEc
Q 019405          173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       173 ~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~d~~i~iwd~  244 (341)
                      +.++|+ .|+....++-.|++.|+.+.....+..          + -+.|  .|..       ..-++|-.+..|.-.|.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy--~p~~kf~qmt~eqtlvGlS~~svFrIDP  544 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFRIDP  544 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeec--CCchhHHhcCccceEEeecccceEEecc
Confidence            444444 355556778888888888776665432          2 3344  3322       12334555666666676


Q ss_pred             CCCCceeEEEEecCCCeEEEEEc----CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          245 SAQRRPVMSFDFRETPIKAVAEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      +-....+..... ....+.-.|+    ....++|+++..|.|++||--.-+....+++- ...|..+..+.+|.++++.|
T Consensus       545 R~~gNKi~v~es-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         545 RARGNKIKVVES-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             cccCCceeeeee-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEee
Confidence            543222332221 1222222232    23459999999999999996544444445555 77899999999999887776


Q ss_pred             CCCcEEEEEcC
Q 019405          321 LDSYLRFWDIK  331 (341)
Q Consensus       321 ~dg~v~iwd~~  331 (341)
                      .. .+.+-|++
T Consensus       623 k~-yllL~d~~  632 (776)
T COG5167         623 KN-YLLLTDVP  632 (776)
T ss_pred             cc-eEEEEecc
Confidence            65 56666654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.35  E-value=0.7  Score=36.36  Aligned_cols=69  Identities=12%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEE------EE-------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ..++.+|++-+.+|.+++||+.+.+..+..      +.       .....|..+.++.+|.-|++- .+|..+.||..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence            346788999999999999999986542221      11       244678889999888766654 4578899987644


Q ss_pred             eEE
Q 019405          291 KLL  293 (341)
Q Consensus       291 ~~~  293 (341)
                      ..+
T Consensus        98 ~W~  100 (219)
T PF07569_consen   98 CWI  100 (219)
T ss_pred             eeE
Confidence            433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.18  E-value=3.2  Score=35.44  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             EecCCCCEEEEeeC-C--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          169 KVDISEKFSLFGGK-G--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       169 ~~~~~~~~l~~~~~-d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      +|.++|+.|+.++. +  ..+.+.|+.+++..+--.......         .....  +++.+.++-...+..|+-.|++
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~--s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL--SPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T---------TT-EE---TTSSEEEEEETTTEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc---------cceEE--ecCCCeEEEEECCCeEEEEECC
Confidence            56678876665554 4  457788888877655443322111         12233  5667776655556788999999


Q ss_pred             CCCceeEEEEecCCCeEEEEEc--CCCceEEEEe---CC-------------------CCEEEEECCCCeEEeEEecccc
Q 019405          246 AQRRPVMSFDFRETPIKAVAEE--PDSFNIYIGN---GS-------------------GDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~---~d-------------------g~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      +.+. ...+......+-...|.  .++..++-.-   .|                   ..|.-.|+.+|+....+..  .
T Consensus       111 T~e~-~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--~  187 (386)
T PF14583_consen  111 TLEE-RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--T  187 (386)
T ss_dssp             T--E-EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--S
T ss_pred             cCcE-EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--C
Confidence            8664 44455555555555553  4555543221   11                   2355668888887666654  5


Q ss_pred             CceeEEEecCCCCEEEEEeCCC-----cEEEEEcC
Q 019405          302 GSIRSIARHPTLPIIASCGLDS-----YLRFWDIK  331 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg-----~v~iwd~~  331 (341)
                      ..+..+.|+|..+.++.=|..|     .-|||-++
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~  222 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN  222 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence            7889999999877666655443     13666554

>PHA03098 kelch-like protein; Provisional

Probab=94.14  E-value=1.8  Score=39.41  Aligned_cols=146  Identities=14%  Similarity=0.062  Sum_probs=70.7

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEE
Q 019405          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL  241 (341)
Q Consensus       173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~i  241 (341)
                      ++...+.||.+     ..+..||..+.+-.. ......       +..-.+++.   -++...+.|+.+      ..+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~lp~-------~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~  410 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE-EPPLIF-------PRYNPCVVN---VNNLIYVIGGISKNDELLKTVEC  410 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceee-CCCcCc-------CCccceEEE---ECCEEEEECCcCCCCcccceEEE
Confidence            56677777765     347778876543221 111100       010112222   256677777632      45788


Q ss_pred             EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC--------CCEEEEECCCCeEEeE--EeccccCceeEEEec
Q 019405          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH  310 (341)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~  310 (341)
                      ||..+.+= .+..+....... +++ ..++..++.|+.+        ..+.+||..+++....  +... ......+.+ 
T Consensus       411 yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-  486 (534)
T PHA03098        411 FSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF-  486 (534)
T ss_pred             EeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE-
Confidence            88776321 011111011111 122 2355666666643        2388999887654322  1111 111111222 


Q ss_pred             CCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          311 PTLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       311 ~~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                       ++..++.|+.+     ..|.+||..+.+
T Consensus       487 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        487 -NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             -CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence             66777777654     478889988754

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.09  E-value=0.37  Score=44.01  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             ceeEEEecC----CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....++.++    +..+|++.+.|+.+|+||+.+++++.++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455566666    6679999999999999999999997654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA03098 kelch-like protein; Provisional

Probab=94.02  E-value=2.4  Score=38.70  Aligned_cols=148  Identities=14%  Similarity=0.049  Sum_probs=70.2

Q ss_pred             CCCEEEEeeCCC------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEE
Q 019405          173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL  241 (341)
Q Consensus       173 ~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~i  241 (341)
                      ++..++.||.++      .+..||..+.+-. .+......      ......+..    ++.+++.|+.+     ..+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~------R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~  362 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYP------RKNPGVTVF----NNRIYVIGGIYNSISLNTVES  362 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcc------cccceEEEE----CCEEEEEeCCCCCEecceEEE
Confidence            456666676542      4778888765432 22211100      011222233    56777777765     34677


Q ss_pred             EEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCC------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      ||..+.+= ....+...... .+++ .-+++..+.|+.+      ..+..||+.+++....-.......-.++ ...++.
T Consensus       363 yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~  439 (534)
T PHA03098        363 WKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGK  439 (534)
T ss_pred             EcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCE
Confidence            88765321 01111111111 1122 2256666677632      4588999887654322111100011122 223566


Q ss_pred             EEEEEeCCC--------cEEEEEcCCCc
Q 019405          315 IIASCGLDS--------YLRFWDIKTRQ  334 (341)
Q Consensus       315 ~l~s~~~dg--------~v~iwd~~~~~  334 (341)
                      .++.|+.+.        .+.+||..+++
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCc
Confidence            666666432        37888887654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.84  E-value=0.65  Score=36.56  Aligned_cols=67  Identities=15%  Similarity=-0.012  Sum_probs=49.8

Q ss_pred             EcCCCceEEEEeCCCCEEEEECCCCeEEeEE-------ec------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------IG------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------~~------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +..++.+|++-+.+|.+++||+.+++.+..-       ..      .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456778999999999999999988764332       11      1246788899998888777664 57889998765


Q ss_pred             C
Q 019405          333 R  333 (341)
Q Consensus       333 ~  333 (341)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=1.1  Score=39.35  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             CeEEEEEcCCCceEEEEeCCCCEEEEEC---------CCCeEEeEEe----------ccccCceeEEEecCCC---CEEE
Q 019405          260 PIKAVAEEPDSFNIYIGNGSGDLASVDI---------RTGKLLGCFI----------GKCSGSIRSIARHPTL---PIIA  317 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~---------~~~~~~~~~~----------~~~~~~i~~~~~~~~~---~~l~  317 (341)
                      .|..+..++.|..++..+.+|.+.++=.         ++|+..-..+          ....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4566778999999999998988766532         2343221111          1012356778999976   5788


Q ss_pred             EEeCCCcEEEEEcCCCc
Q 019405          318 SCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~  334 (341)
                      .-+.|..||+||+..-.
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            88899999999987643

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.56  E-value=4.1  Score=34.53  Aligned_cols=76  Identities=17%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             eeEEEEecCCCeEEEEEcC-------CCceEEEEeCCCCEEEEECCCCeEEe---EEeccccCceeEEEecCCCCEEEEE
Q 019405          250 PVMSFDFRETPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~-------~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      |+..+..| ..+..+.|..       .|.++++.-..+.|....+..+..+.   .+.......+..+++.|||.++++.
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~  323 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD  323 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred             cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence            34444434 4566777753       45566666666788888877553322   2222214479999999999988888


Q ss_pred             eCCCcEE
Q 019405          320 GLDSYLR  326 (341)
Q Consensus       320 ~~dg~v~  326 (341)
                      +.+|.|.
T Consensus       324 d~~G~iy  330 (331)
T PF07995_consen  324 DSDGKIY  330 (331)
T ss_dssp             -TTTTEE
T ss_pred             CCCCeEe
Confidence            8888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.04  E-value=2.3  Score=30.15  Aligned_cols=109  Identities=14%  Similarity=0.137  Sum_probs=69.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-----CCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                      .|+.++..|.+.|.+...........+..++..++  ...|.+++-.+     +...|+.|+.. .|..||+.+...++.
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFY   88 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhh
Confidence            78888889999999876655444446667788776  45777775533     34567777665 799999987665543


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEe-cCCCCEEEEEeCCCeEEEEEcCC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      -..+          ..++++.+-. .....-++..+.+..|.-||...
T Consensus        89 ke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   89 KEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             hhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            3322          3366666521 12123344444577888888664

>PRK13684 Ycf48-like protein; Provisional

Probab=93.03  E-value=5  Score=34.04  Aligned_cols=151  Identities=11%  Similarity=-0.018  Sum_probs=80.7

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ..+..+.+.+++.+++++ ..|.+.. ..+.+ +.........        ...++++.+  .++++.++++ ..|.+++
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~--------~~~l~~i~~--~~~g~~~~vg-~~G~~~~  239 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNS--------SRRLQSMGF--QPDGNLWMLA-RGGQIRF  239 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCC--------cccceeeeE--cCCCCEEEEe-cCCEEEE
Confidence            457788888887766554 4454442 22222 2222222211        144788888  6778776665 5676653


Q ss_pred             EEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec--cccCceeEEEecCCCCE
Q 019405          242 YDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPI  315 (341)
Q Consensus       242 wd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~  315 (341)
                      =....+.. -.....    ....+.++.+.|++..+++ +.+|.+.. ....++.-...+.  ......+.+.|..++..
T Consensus       240 ~s~d~G~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~  316 (334)
T PRK13684        240 NDPDDLES-WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG  316 (334)
T ss_pred             ccCCCCCc-cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCce
Confidence            22333221 111111    1235778899998776555 45665543 3443433222221  11345788888777666


Q ss_pred             EEEEeCCCcEEEEEc
Q 019405          316 IASCGLDSYLRFWDI  330 (341)
Q Consensus       316 l~s~~~dg~v~iwd~  330 (341)
                      ++ .+..|.|.-|+-
T Consensus       317 ~~-~G~~G~il~~~~  330 (334)
T PRK13684        317 FV-LGQRGVLLRYVG  330 (334)
T ss_pred             EE-ECCCceEEEecC
Confidence            55 557788777653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.90  E-value=4.3  Score=32.88  Aligned_cols=109  Identities=15%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             eeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE-CCCCe
Q 019405          216 FTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTGK  291 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd-~~~~~  291 (341)
                      +.+.+.  ++++..++...   ....++++...  ......+.  ...+..-.|++++...++...+...+++. ..+++
T Consensus        26 ~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   26 VTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccceEE--CCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            667788  88998877655   33345555433  32122222  23678889999988777777677777763 33333


Q ss_pred             EE-eEEecccc-CceeEEEecCCCCEEEEEe---CCCcEEEEEc
Q 019405          292 LL-GCFIGKCS-GSIRSIARHPTLPIIASCG---LDSYLRFWDI  330 (341)
Q Consensus       292 ~~-~~~~~~~~-~~i~~~~~~~~~~~l~s~~---~dg~v~iwd~  330 (341)
                      .. ........ ..|..+.++|||..++...   .++.|.+=-+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            21 12222112 2899999999999776654   3466766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.83  E-value=0.96  Score=43.49  Aligned_cols=106  Identities=10%  Similarity=0.002  Sum_probs=66.5

Q ss_pred             cCCCCEEEE--EeCCCeEEEEEcCCCCce----eEEEEe------cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCC
Q 019405          224 IDDHRKFVA--GTNDHQVRLYDTSAQRRP----VMSFDF------RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       224 ~~~~~~l~~--~~~d~~i~iwd~~~~~~~----~~~~~~------~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~  290 (341)
                      .+|....++  .+++-.|..||+++....    ..-+..      ...-..++.|+|.- ...++...|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            445544443  344457899998864311    111111      11234567888753 34566778888888876532


Q ss_pred             e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          291 K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       291 ~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      . ....++.  ....++++|+|.|..++.|-..|++.-|...
T Consensus       189 ~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  189 AQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            2 2233332  5678999999999999999999998877653

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.73  E-value=6.7  Score=34.68  Aligned_cols=143  Identities=19%  Similarity=0.183  Sum_probs=83.6

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-------CEEEEeeCCCeEEEEECCC-Cce
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-------KFSLFGGKGVEVNVWDLDK-CEK  196 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~d~~v~i~d~~~-~~~  196 (341)
                      .+..+...+.+.-.|++.++        .|..|++..  .+ -+.+.|+.       ..-++|-.+..|.-.|.+- +..
T Consensus       482 i~~dg~~~~kLykmDIErGk--------vveeW~~~d--dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGK--------VVEEWDLKD--DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             EEecCCCcccceeeecccce--------eeeEeecCC--cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            44455556666677776555        678898743  33 56666642       2223455555666666652 322


Q ss_pred             eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE
Q 019405          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g  276 (341)
                      +.......   +.  ......+..-   ....+++.++..|-|++||.-. .+....+.+-...|..+..+.+|.++++.
T Consensus       551 i~v~esKd---Y~--tKn~Fss~~t---TesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaT  621 (776)
T COG5167         551 IKVVESKD---YK--TKNKFSSGMT---TESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILAT  621 (776)
T ss_pred             eeeeeehh---cc--cccccccccc---ccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEe
Confidence            21111100   00  0011222222   3456999999999999999654 33244455566789999999999888776


Q ss_pred             eCCCCEEEEECC
Q 019405          277 NGSGDLASVDIR  288 (341)
Q Consensus       277 ~~dg~i~iwd~~  288 (341)
                      +. ..+.+-|++
T Consensus       622 Ck-~yllL~d~~  632 (776)
T COG5167         622 CK-NYLLLTDVP  632 (776)
T ss_pred             ec-ceEEEEecc
Confidence            64 467777764

>PHA02790 Kelch-like protein; Provisional

Probab=92.29  E-value=7.5  Score=34.94  Aligned_cols=141  Identities=10%  Similarity=0.002  Sum_probs=69.7

Q ss_pred             CCCEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---eEEEEEcCCC
Q 019405          173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ  247 (341)
Q Consensus       173 ~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~  247 (341)
                      ++...+.||.+  ..+..||..+.+-. .+......      ......+..    ++...+.|+.++   .+..||.++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~------r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKP------RCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCC------CcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCC
Confidence            56666777753  35777887654321 11111100      011222233    677777777553   4667887653


Q ss_pred             CceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          248 RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       248 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      +  -.....   .......+  .-+++..+.|   |.+.+||.++++...  .+... .... +++. -++++.+.||.+
T Consensus       387 ~--W~~~~~m~~~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~-~~~v-~~~~IYviGG~~  456 (480)
T PHA02790        387 Q--WQFGPSTYYPHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNP-ELII-VDNKLLLIGGFY  456 (480)
T ss_pred             E--EEeCCCCCCccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC-cccc-EEEE-ECCEEEEECCcC
Confidence            2  111110   10111112  2355566666   357789988765532  22211 1122 2222 367777777754


Q ss_pred             -----CcEEEEEcCCCc
Q 019405          323 -----SYLRFWDIKTRQ  334 (341)
Q Consensus       323 -----g~v~iwd~~~~~  334 (341)
                           ..+..||..+.+
T Consensus       457 ~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        457 RGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCcccceEEEEECCCCe
Confidence                 357888888764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.19  E-value=7.3  Score=33.89  Aligned_cols=195  Identities=12%  Similarity=0.014  Sum_probs=88.9

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEee---cC---CceEEEEecCCCCEEEEee------CCCeEEEEECC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---AS---GTIAFSKVDISEKFSLFGG------KGVEVNVWDLD  192 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---~~---~~i~~~~~~~~~~~l~~~~------~d~~v~i~d~~  192 (341)
                      .++-+-.++.|.|.|+...+..    -...++.+..   ..   ..-..+-.-|+|+.++++-      .-|.+.++|-+
T Consensus        90 Li~PgL~SsrIyviD~~~dPr~----P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   90 LILPGLRSSRIYVIDTKTDPRK----PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             EEEEBTTT--EEEEE--S-TTS-----EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             EEeeeeccCcEEEEECCCCCCC----CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            4455557889999998755431    1122332210   00   1112233346787877642      23468888888


Q ss_pred             CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC--------------------CCeEEEEEcCCCCceeE
Q 019405          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------------------DHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~  252 (341)
                      +.+.....+.....      ...-...-|  .|..+.+++...                    ..++.+||+.+.+ +++
T Consensus       166 tf~v~g~We~~~~~------~~~gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q  236 (461)
T PF05694_consen  166 TFEVKGRWEKDRGP------QPFGYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQ  236 (461)
T ss_dssp             T--EEEE--SB-TT------------EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEE
T ss_pred             cccccceeccCCCC------CCCCCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-Eee
Confidence            77666555543221      123455566  667777777543                    3579999999865 478


Q ss_pred             EEEecCC--CeEEEEEc--CCCceEEEEe-CCCCEEEEEC-CCCe----EEeEEecc---------c-------cCceeE
Q 019405          253 SFDFRET--PIKAVAEE--PDSFNIYIGN-GSGDLASVDI-RTGK----LLGCFIGK---------C-------SGSIRS  306 (341)
Q Consensus       253 ~~~~~~~--~v~~~~~~--~~~~~l~~g~-~dg~i~iwd~-~~~~----~~~~~~~~---------~-------~~~i~~  306 (341)
                      ++.....  ....+.|.  |+..+=++|+ ..++|..|-- ..++    .+-.+...         .       ..-|+.
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD  316 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD  316 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence            7776433  24456664  5554444433 4455555533 3442    22222211         0       235799


Q ss_pred             EEecCCCCEEEEEe-CCCcEEEEEcCC
Q 019405          307 IARHPTLPIIASCG-LDSYLRFWDIKT  332 (341)
Q Consensus       307 ~~~~~~~~~l~s~~-~dg~v~iwd~~~  332 (341)
                      +..|.|.++|..++ .+|.||.||+..
T Consensus       317 I~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  317 ILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             EEEccCCCEEEEEcccCCcEEEEecCC
Confidence            99999999887766 689999999976

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.15  E-value=1.3  Score=38.16  Aligned_cols=162  Identities=17%  Similarity=0.124  Sum_probs=94.3

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCC-CCCccCccCCeeee-EEEEEecCCCCEEEEEeCCCeE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPP-PKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      ..+..+-..||++.++.-+. .++.++++.+.... +++... .++..     ..|+ .+..  -..+.-+++++.||.|
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----~~Vte~l~l--L~Gg~SLLv~~~dG~v  292 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----HQVTEQLYL--LSGGFSLLVVHEDGLV  292 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----HHHHHHHHH--HhCceeEEEEcCCCce
Confidence            45667788899999887665 58889988754321 122111 11000     1111 1111  1245667888889988


Q ss_pred             EEE-EcCCCCce----eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       240 ~iw-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      .-| |.+....+    ++.++....++..+.-..+.+-+++-+..|++..+.....+.+..-..  -..+.-+++||.+.
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~  370 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence            766 55543322    222222223444443333445677777888888886654444322222  23567789999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCce
Q 019405          315 IIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +|++- ..|.++++.+++..+
T Consensus       371 ~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         371 YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             hheee-cCCceEEEEecCCCC
Confidence            98876 456899998887554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.13  E-value=1.3  Score=40.57  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC---CCceeEEEEe----------------------cCCCeEEEEEcC----CCceEEE
Q 019405          225 DDHRKFVAGTNDHQVRLYDTSA---QRRPVMSFDF----------------------RETPIKAVAEEP----DSFNIYI  275 (341)
Q Consensus       225 ~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~----------------------~~~~v~~~~~~~----~~~~l~~  275 (341)
                      ++...++.+..||.+.......   ..........                      .......++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3667888888999988887664   1111111110                      012345566665    6678999


Q ss_pred             EeCCCCEEEEECCCCeEEeEE
Q 019405          276 GNGSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~  296 (341)
                      -+.|+.+|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.09  E-value=7.5  Score=33.81  Aligned_cols=148  Identities=15%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             eEEEEecCCCCEEEEee--------------------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec
Q 019405          165 IAFSKVDISEKFSLFGG--------------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~--------------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (341)
                      -..+-+.|..+.+++..                    ...++.+||+.+.+.++.+.-....       .....+.|.-.
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-------~~pLEvRflH~  255 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-------QMPLEVRFLHD  255 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-------EEEEEEEE-SS
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-------CceEEEEecCC
Confidence            34556667777777643                    2457999999999998887765321       23556777545


Q ss_pred             CCCCEEEEEe-CCCeEEEEEc-CCCC---ceeEEEEec-----------------CCCeEEEEEcCCCceEEEEe-CCCC
Q 019405          225 DDHRKFVAGT-NDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEPDSFNIYIGN-GSGD  281 (341)
Q Consensus       225 ~~~~~l~~~~-~d~~i~iwd~-~~~~---~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~g~-~dg~  281 (341)
                      |+..+=.+++ -..+|..|-- ..++   +.+..+...                 ..-|+.+..|.|.++|+..+ .+|.
T Consensus       256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd  335 (461)
T PF05694_consen  256 PDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD  335 (461)
T ss_dssp             TT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE
T ss_pred             CCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc
Confidence            6665533333 3444544433 3221   112222211                 13478899999999988665 6899


Q ss_pred             EEEEECCCC---eEEeEEecc---------------ccCceeEEEecCCCCEEEEE
Q 019405          282 LASVDIRTG---KLLGCFIGK---------------CSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       282 i~iwd~~~~---~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~s~  319 (341)
                      |+.||+.+.   +++.++.-.               -.+...-+..|.||+.|...
T Consensus       336 vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  336 VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            999999753   444433211               01123557778888765443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.89  E-value=6  Score=34.39  Aligned_cols=102  Identities=10%  Similarity=0.069  Sum_probs=66.1

Q ss_pred             ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                      +...+.|.++.|  ++|.+.+|+--.+++|.+++....+.   ..++-+..+..|....|+.+. -+|.-...| +.+|-
T Consensus        63 m~d~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~  138 (657)
T KOG2377|consen   63 MDDKGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQ  138 (657)
T ss_pred             ecCCCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEE
Confidence            334577999999  99999999999999999999854321   122223344568889998663 455444333 55554


Q ss_pred             CCC-CeEEeEEeccccCceeEEEecCCCCEE
Q 019405          287 IRT-GKLLGCFIGKCSGSIRSIARHPTLPII  316 (341)
Q Consensus       287 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l  316 (341)
                      ... .+.++..+.+ ...|+=-.|.++.+.+
T Consensus       139 v~pekrslRlVks~-~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  139 VLPEKRSLRLVKSH-NLNVNWYMYCPETAVI  168 (657)
T ss_pred             Echhhhhhhhhhhc-ccCccEEEEccccceE
Confidence            432 2334444555 6677777788887743

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.73  E-value=11  Score=35.01  Aligned_cols=55  Identities=13%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       258 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      ...+..+..||+.++|+.-...|.|.+-+....+....+......+-..++|..+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            3567789999999999999999999999887766665554221222234555433

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.66  E-value=0.021  Score=48.94  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~  247 (341)
                      .|-+.+.-++.++.+..+..||-. ++.......+          .....++|  .-++..+ +.+...+.+.+||+.+.
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~w--DkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAW--DKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhh--ccccchhhhhhhcCCCeeechhhhh
Confidence            444555557777778788888853 3333333222          22445666  4455544 45667889999999874


Q ss_pred             CceeEEEEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          248 RRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       248 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      .  .+.+... ...-.-+.|++....++.+...|.+.|++..+.+.+-..-.| ...+++++|.+.+..+..
T Consensus       108 y--tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  108 Y--TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             h--HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccceeeec
Confidence            3  2222211 111122789999999999999999999999887776555445 788999999988755443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.63  E-value=1.3  Score=23.92  Aligned_cols=31  Identities=29%  Similarity=0.551  Sum_probs=24.3

Q ss_pred             CCCceEEEEe-CCCCEEEEECCCCeEEeEEec
Q 019405          268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       268 ~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~  298 (341)
                      |+++.|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677676655 578999999999988887765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.54  E-value=13  Score=35.53  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE----ecc--------------ccCceeEEEecCCCCEEEEEe
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGK--------------CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~--------------~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ..|.++....-+..++....||+|.++|..+.+.+...    ...              .-.++..++|||++..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45667777677788999999999999998877554433    100              012344588999999999999


Q ss_pred             CCCcEE
Q 019405          321 LDSYLR  326 (341)
Q Consensus       321 ~dg~v~  326 (341)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.42  E-value=7.7  Score=38.22  Aligned_cols=72  Identities=18%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +..++.+..+..... ++.+...+.+-+|+.........+..      ....+++++..++++..||.+.+||...++.
T Consensus       197 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLP------NGQLESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cccccceeeeecCCC-cceeeeeeeeeehhcccccchhhccc------ccccCccCCceEEEEEecCCEEeeecCCCce
Confidence            445555554443332 33344456666666544333333322      1122278889999999999999999998866

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.33  E-value=14  Score=36.64  Aligned_cols=162  Identities=9%  Similarity=0.048  Sum_probs=86.3

Q ss_pred             ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCC
Q 019405           72 RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC  151 (341)
Q Consensus        72 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~  151 (341)
                      +-|+.+.+|+.+++.....+...        ...|..+....+..+-=...=..++..+.--.+.++-+.+.....+. .
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~  166 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-S  166 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-c
Confidence            45799999999987766666652        23444454444332100000013444445556777776655422111 0


Q ss_pred             ceEEEEEeec-CCceEEEEecCCCCEEEEeeCCCeEEE--EECCCC---ceeeecCCCCCC--------ccC--ccCCee
Q 019405          152 STVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNV--WDLDKC---EKIWTAKPPPKN--------SLG--IFTPTW  215 (341)
Q Consensus       152 ~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~i--~d~~~~---~~~~~~~~~~~~--------~~~--~~~~~~  215 (341)
                      -....+.+.. +-.|.|+....+|+.+++| .||.|+-  |....+   +....+. +...        ...  -.+..+
T Consensus       167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kic-lt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  167 IFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKIC-LTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             ccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhccccccc-CchhHHHHhhhhhhcCCCCCCCc
Confidence            0111133323 4568888877777776654 5554432  222211   1000000 0000        000  123457


Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      |..++.  ...-+.+.+-+..++|.+||+..
T Consensus       245 I~qi~I--D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITI--DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEe--ccccceeeeeccCceEEEEEccC
Confidence            888998  66777888999999999999986

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.28  E-value=6.5  Score=31.46  Aligned_cols=140  Identities=12%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCC--CceeE----EEEe
Q 019405          186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQ--RRPVM----SFDF  256 (341)
Q Consensus       186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~--~~~~~----~~~~  256 (341)
                      -.+||+.+++... +....        ..++.+-.+  -++|++|.+|+..   ..+++++....  .+...    .+. 
T Consensus        48 s~~yD~~tn~~rp-l~v~t--------d~FCSgg~~--L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-  115 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQT--------DTFCSGGAF--LPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-  115 (243)
T ss_pred             EEEEecCCCcEEe-ccCCC--------CCcccCcCC--CCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-
Confidence            3468887765432 22111        122333345  5789999988752   35788875440  11011    111 


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCC-EEEEECCC-CeEEeE---Eec----cccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRT-GKLLGC---FIG----KCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~-i~iwd~~~-~~~~~~---~~~----~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      ...+-.+...-|||+.|+.|+...- ..+|.... ......   +..    ....---.+...|+|++++.+..+.  .|
T Consensus       116 ~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i  193 (243)
T PF07250_consen  116 SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--II  193 (243)
T ss_pred             CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EE
Confidence            2233445556689999999887743 45554421 111111   110    0012223466779999999887664  56


Q ss_pred             EEcCCCceeeee
Q 019405          328 WDIKTRQLLSAV  339 (341)
Q Consensus       328 wd~~~~~~~~~~  339 (341)
                      ||..+.+.+.++
T Consensus       194 ~d~~~n~v~~~l  205 (243)
T PF07250_consen  194 YDYKTNTVVRTL  205 (243)
T ss_pred             EeCCCCeEEeeC
Confidence            788887766554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.20  E-value=0.13  Score=47.80  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCc----eeEEEEecCCCeEEEEEcC---CCceEEEEeCCCCEEE
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRR----PVMSFDFRETPIKAVAEEP---DSFNIYIGNGSGDLAS  284 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~----~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~i  284 (341)
                      +.+-.+.|. +-+...+.  -.-|.+.+||+.-  ++.    .++........+.-+.|.|   +..++..+-.++.+++
T Consensus       133 G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l  209 (1283)
T KOG1916|consen  133 GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL  209 (1283)
T ss_pred             CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence            335555662 22222222  2335778888763  221    1222222334455666765   5567777778888888


Q ss_pred             EECCCCeEEeEEeccccCceeEEE-----------ecCCCCEEEEEeCCCcEEEEEc
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIA-----------RHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ....+... ..+.+| ...+..++           .+|||..|++++.||.+++|.+
T Consensus       210 L~~~ra~~-~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  210 LNINRALR-SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeechHHH-HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            77654322 334444 44444433           5799999999999999988875

>PRK10115 protease 2; Provisional

Probab=90.97  E-value=14  Score=34.89  Aligned_cols=110  Identities=7%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             eEEEEecCCCCEEEEeeC-----CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---
Q 019405          165 IAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---  236 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---  236 (341)
                      +..+.++|++++|+.+..     .-.|++.|+.+++.+......          . -..++|  .++++.|+....+   
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----------~-~~~~~w--~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----------V-EPSFVW--ANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----------c-ceEEEE--eeCCCEEEEEEecCCC
Confidence            556788999998886533     235888898877533211111          0 134788  6677665554332   


Q ss_pred             ---CeEEEEEcCCCC-ceeEEEEecCCCeE-EEEEcCCCceEEEEeC---CCCEEEEEC
Q 019405          237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGNG---SGDLASVDI  287 (341)
Q Consensus       237 ---~~i~iwd~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~---dg~i~iwd~  287 (341)
                         ..|+.+++.+.. .....+........ .+..+.++++++..+.   ++.+.+++.
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence               367788888762 12334443333333 3333447777665443   457888884

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.90  E-value=10  Score=33.13  Aligned_cols=158  Identities=11%  Similarity=0.092  Sum_probs=87.9

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeee--ccccccccccceeEEEcccceeEEEE
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRS  139 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~i~~  139 (341)
                      ..+.+++|+..|.++||++..+....  .+-..      .-..+|..+..=.  ...      ....++.-.-..+.||.
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~------~l~~PILqv~~G~F~s~~------~~~~LaVLhP~kl~vY~  103 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET------QLKDPILQVECGKFVSGS------EDLQLAVLHPRKLSVYS  103 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE------ecCCcEEEEEeccccCCC------CcceEEEecCCEEEEEE
Confidence            44679999999999999996543211  11100      1225666554321  111      11445556677788888


Q ss_pred             eeecccc--cccCCceEEEEEeecCCceEEEEecC----C-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccC
Q 019405          140 IEVTKVS--AESSCSTVKSWNVCASGTIAFSKVDI----S-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (341)
Q Consensus       140 ~~~~~~~--~~~~~~~v~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  212 (341)
                      +......  .+.....-.++...-......+.+-|    . ..+|++-+.||.+.+|+-+.......++.--       .
T Consensus       104 v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-------l  176 (418)
T PF14727_consen  104 VSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-------L  176 (418)
T ss_pred             EEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-------C
Confidence            8433221  01111112233333233334444322    2 4678889999999999987655444444311       1


Q ss_pred             CeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      |+   .+.|  .+.-+.|++++.+..+..|...
T Consensus       177 Pg---Pl~Y--~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  177 PG---PLCY--CPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             Cc---CeEE--eecCCEEEEecCceeEEEecHH
Confidence            23   3466  4566678888888888888753

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.87  E-value=9.8  Score=32.81  Aligned_cols=151  Identities=17%  Similarity=0.126  Sum_probs=84.9

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ..++.+..+|.|.-.|.++++.++.......       ...+..-.+  ..+| .++.++.++.++.+|.++++. +-..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~-------~~~~~~~~~--~~~G-~i~~g~~~g~~y~ld~~~G~~-~W~~  137 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGA-------VAQLSGPIL--GSDG-KIYVGSWDGKLYALDASTGTL-VWSR  137 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCc-------ceeccCceE--EeCC-eEEEecccceEEEEECCCCcE-EEEE
Confidence            3455557888999999999887765444320       011222223  2245 477888899899999877664 4444


Q ss_pred             EecCC-CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc--cCceeEEEecCCCCEEEEEeC--CCcEEEEE
Q 019405          255 DFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGL--DSYLRFWD  329 (341)
Q Consensus       255 ~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~--dg~v~iwd  329 (341)
                      ..... .+..-..-.++ .++.++.++.+...|..+|+.+.......  ...+..-....++ .+..+..  ++.+.-.|
T Consensus       138 ~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~  215 (370)
T COG1520         138 NVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALN  215 (370)
T ss_pred             ecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEE
Confidence            44430 11111222233 44555578999999999998876654420  1111111111233 3334434  55677778


Q ss_pred             cCCCceeee
Q 019405          330 IKTRQLLSA  338 (341)
Q Consensus       330 ~~~~~~~~~  338 (341)
                      +.+|+.+..
T Consensus       216 ~~~G~~~w~  224 (370)
T COG1520         216 AEDGTLKWS  224 (370)
T ss_pred             ccCCcEeee
Confidence            777776654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=6.9  Score=30.25  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=71.1

Q ss_pred             eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE--EecC
Q 019405          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRE  258 (341)
Q Consensus       181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~  258 (341)
                      -.+|.-..||.++.+.+..+.-..          .-..++.    ++..|+.+....+++.-|..+... ..+.  ....
T Consensus       108 w~egvaf~~d~~t~~~lg~~~y~G----------eGWgLt~----d~~~LimsdGsatL~frdP~tfa~-~~~v~VT~~g  172 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFSYEG----------EGWGLTS----DDKNLIMSDGSATLQFRDPKTFAE-LDTVQVTDDG  172 (262)
T ss_pred             eccceeEEEChHHhhhhcccccCC----------cceeeec----CCcceEeeCCceEEEecCHHHhhh-cceEEEEECC
Confidence            356777788888777665555432          1233433    555567666666777777665432 1111  1122


Q ss_pred             CCeE---EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe-----------ccccCceeEEEecCCCC-EEEEE
Q 019405          259 TPIK---AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----------GKCSGSIRSIARHPTLP-IIASC  319 (341)
Q Consensus       259 ~~v~---~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~-~l~s~  319 (341)
                      .+|.   -+.| -+|...|---.+..|...|.++|+.+..+.           ..+.+..+.+++.|++. ++++|
T Consensus       173 ~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         173 VPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            2332   3344 256566666666677777788877665543           11245678899999884 55555

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.36  E-value=7.1  Score=30.34  Aligned_cols=104  Identities=11%  Similarity=0.075  Sum_probs=61.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCCCceEEEEeCC---C---CEEEE---ECC--CCeEEe-
Q 019405          228 RKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---G---DLASV---DIR--TGKLLG-  294 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g---~i~iw---d~~--~~~~~~-  294 (341)
                      +.|..+...+.|.+|++.... .++..+.. -+.|..+.++..|.+|++-=.+   .   .+|+|   ...  ..+++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            344444667889999998433 33455543 3789999999999999985332   2   46665   211  111111 


Q ss_pred             EEec--------------------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          295 CFIG--------------------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       295 ~~~~--------------------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .+-|                    +-..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            1112                    1134677788777544455554 447888877643

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.19  E-value=11  Score=32.42  Aligned_cols=191  Identities=14%  Similarity=0.138  Sum_probs=99.2

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC---ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG---TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  201 (341)
                      .+.++..+|.+.-.+.+...          .+|......   .+..-.+..+|+ ++.++.++.++.+|.++++..+...
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~----------~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~  138 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGL----------VKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRN  138 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCc----------EEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEe
Confidence            56666777755555543222          235433221   111112222555 7778888899999999999998877


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---CCeEEEEEcCCCceEEEEeC
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~g~~  278 (341)
                      ... .      .........    ....+...+.++.+...|..++.. +-......   ..+..--. .....++.+..
T Consensus       139 ~~~-~------~~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~-~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~  205 (370)
T COG1520         139 VGG-S------PYYASPPVV----GDGTVYVGTDDGHLYALNADTGTL-KWTYETPAPLSLSIYGSPA-IASGTVYVGSD  205 (370)
T ss_pred             cCC-C------eEEecCcEE----cCcEEEEecCCCeEEEEEccCCcE-EEEEecCCccccccccCce-eecceEEEecC
Confidence            654 0      011222122    223444444677777777776653 22221111   00110000 12234555555


Q ss_pred             --CCCEEEEECCCCeEEeEEeccccCc---eeEEEecCCC-----CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 --SGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHPTL-----PIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 --dg~i~iwd~~~~~~~~~~~~~~~~~---i~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                        ++.+.-.|..+|......+.++.-.   +........+     .-+..++.++.+...|..+|+.+.+.
T Consensus       206 ~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         206 GYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             CCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence              6678888888888776643221111   1001111111     12356667777888888888877654

>smart00564 PQQ beta-propeller repeat

Probab=89.77  E-value=1.1  Score=22.61  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeec
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                      ..++.++.++.+..+|.++|+.++.+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            36777888999999999999888764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.67  E-value=12  Score=31.75  Aligned_cols=164  Identities=15%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             CceEEEEecCCCCEEEEeeCCCe------EEEEECCC--C--cee-----eecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVE------VNVWDLDK--C--EKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~------v~i~d~~~--~--~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (341)
                      +.+..+.+.+++..+++.+.++.      +..+++..  +  ..+     ..+.......+.. ..--..++++  .+++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~--~~~g   96 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAV--PPDG   96 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEE--ecCC
Confidence            45677788766666666677776      55555543  1  001     1111111111100 0012456777  6788


Q ss_pred             CEEEEEeCC------CeEEEEEcCCCCceeEEE---------------EecCCCeEEEEEcCCCceEEEEeCC-----C-
Q 019405          228 RKFVAGTND------HQVRLYDTSAQRRPVMSF---------------DFRETPIKAVAEEPDSFNIYIGNGS-----G-  280 (341)
Q Consensus       228 ~~l~~~~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~g~~d-----g-  280 (341)
                      .++++.-.+      ..|+.++.. +.. ...+               ...+...-+++++|+|+.|+++...     + 
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            888887777      788888866 332 2222               1134467889999999966665432     2 


Q ss_pred             -C-------EEE--EECCC-CeE----EeEEecc----ccCceeEEEecCCCCEEEEEe-----CCCcEEEEEcC
Q 019405          281 -D-------LAS--VDIRT-GKL----LGCFIGK----CSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIK  331 (341)
Q Consensus       281 -~-------i~i--wd~~~-~~~----~~~~~~~----~~~~i~~~~~~~~~~~l~s~~-----~dg~v~iwd~~  331 (341)
                       .       ++|  ||..+ ++.    .+.+...    ....|..+.+.+++++|+.--     ....++|+.+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence             1       444  45544 322    2222210    146788999999998766432     23455555443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.42  E-value=14  Score=32.26  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=78.6

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      ...+...+++.+++.+.....++-||-  ++.. .....+.        ...+..+.+  .+++.+++++ .+|.+.. .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~--------~~~l~~v~~--~~dg~l~l~g-~~G~l~~-S  306 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRAS--------ARRIQNMGW--RADGGLWLLT-RGGGLYV-S  306 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCC--------ccceeeeeE--cCCCCEEEEe-CCceEEE-e
Confidence            344556677777776555433334443  2221 1111111        244788888  7788777665 5666543 2


Q ss_pred             cCCCCc----eeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe--ccccCceeEEEecCCCCE
Q 019405          244 TSAQRR----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       244 ~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~  315 (341)
                      ...++.    .......  ....+.++.|.+++..+++ +..|.+.... ..|+.-...+  ..-....+.+.|.++++.
T Consensus       307 ~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g  384 (398)
T PLN00033        307 KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKG  384 (398)
T ss_pred             cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCce
Confidence            222221    1222221  1234888999888766555 4567666553 3344322222  111457889999877666


Q ss_pred             EEEEeCCCcEEEE
Q 019405          316 IASCGLDSYLRFW  328 (341)
Q Consensus       316 l~s~~~dg~v~iw  328 (341)
                      +++| .+|.|.-|
T Consensus       385 ~~~G-~~G~il~~  396 (398)
T PLN00033        385 FVLG-NDGVLLRY  396 (398)
T ss_pred             EEEe-CCcEEEEe
Confidence            6655 67766544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.24  E-value=13  Score=31.60  Aligned_cols=107  Identities=12%  Similarity=-0.078  Sum_probs=53.7

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEec--CCCCEEEEEeCC---
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI--DDHRKFVAGTND---  236 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~d---  236 (341)
                      -..|+|.|+++++++ -..|.|++++ ..+..   +..+...     ..........++++|.  .++.+.+..+..   
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-----~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~   76 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-----FADGERGLLGIAFHPDFASNGYLYVYYTNADED   76 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccc-----cccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence            467899999877665 6699999999 44433   2222211     1112355788999431  123333333321   


Q ss_pred             -----CeEEEEEcCCC-------CceeEEEEe---cCCCeEEEEEcCCCceEEEEeC
Q 019405          237 -----HQVRLYDTSAQ-------RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       237 -----~~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                           ..|.-|.....       +..+..+..   ....-..|.|.|+|.+.++.+.
T Consensus        77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence                 23444544433       111112222   2234567999999966555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK05560 DNA gyrase subunit A; Validated

Probab=89.21  E-value=22  Score=34.36  Aligned_cols=251  Identities=13%  Similarity=0.066  Sum_probs=118.3

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      .+.+++-+.+|.|+--...+..... ...... ......++.+......+...        .++..+..|.+....+..-
T Consensus       498 E~v~vllS~~GyIKri~~~~~~~~~-~~~~g~~~~klKe~D~l~~~~~~~t~d--------~LllfTs~Grv~~l~v~~i  568 (805)
T PRK05560        498 EDVVVTLTHGGYIKRTPLDEYRAQR-RGGKGVSGAKTKEDDFVEHLFVASTHD--------TLLFFTNRGRVYRLKVYEI  568 (805)
T ss_pred             CCEEEEEeCCCEEEEcchhhhhhhc-ccCCCccccccCCCCeeEEEEEecCCC--------eEEEEecCCeEEEEEhhhC
Confidence            4468888899999988664422100 000000 00001234454444444444        6777777787766655433


Q ss_pred             ccccccCCce-E-EEEEeecCCc-eEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          144 KVSAESSCST-V-KSWNVCASGT-IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       144 ~~~~~~~~~~-v-~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      +.......|. + .+.....+.. +.++.+..  +...++..+.+|.++--++..-.....  . ....+.+.....+..
T Consensus       569 P~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r--~-G~~~ikLke~D~lv~  645 (805)
T PRK05560        569 PEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRS--N-GIIAINLDEGDELIG  645 (805)
T ss_pred             cCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhccc--C-CceeeccCCCCEEEE
Confidence            3221111121 1 1122333333 44444542  567888899999998777643221110  0 000001111133444


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCCC--------ceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--------RPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      +..  ......++..+..|.+..+....-.        .....+.. ...|.+ +.+.++...++..+..|.++...+..
T Consensus       646 v~~--~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e  722 (805)
T PRK05560        646 VRL--TDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSE  722 (805)
T ss_pred             EEE--eCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHH
Confidence            444  2344556666777877766654311        01122222 223433 34444444677788888888775431


Q ss_pred             ---------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          290 ---------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       290 ---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                               |.....+... .+.+..+....+...++..+.+|.+..++..
T Consensus       723 ~~~~~R~~kG~~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~  772 (805)
T PRK05560        723 YRLQGRGGKGVITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIRTRVS  772 (805)
T ss_pred             hhccCCCCCcEEeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence                     1122222221 2344443333333445566677777666654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.17  E-value=20  Score=35.80  Aligned_cols=142  Identities=10%  Similarity=0.169  Sum_probs=80.4

Q ss_pred             eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE-ec-----CCCCEEEEEeCCCeEEEEEcCCCCc--ee-
Q 019405          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL-SI-----DDHRKFVAGTNDHQVRLYDTSAQRR--PV-  251 (341)
Q Consensus       181 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-----~~~~~l~~~~~d~~i~iwd~~~~~~--~~-  251 (341)
                      +-|+.+.+|+.+++.....+......         |..|... |.     |.=++++.-..--.|.++-+.-.+.  .. 
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~sht---------Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~  166 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHT---------ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS  166 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhh---------heeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence            45778999999987666655543321         3333322 11     1112333323333455554332111  01 


Q ss_pred             -----EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE--CCCC---e-E----------------EeEEeccccCce
Q 019405          252 -----MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD--IRTG---K-L----------------LGCFIGKCSGSI  304 (341)
Q Consensus       252 -----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd--~~~~---~-~----------------~~~~~~~~~~~i  304 (341)
                           .++......|.++....+|+.+++|- ||.|+-.-  ...+   + +                +..+.+.+..+|
T Consensus       167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI  245 (1311)
T KOG1900|consen  167 IFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI  245 (1311)
T ss_pred             ccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc
Confidence                 12222345688888788888777654 55444321  1111   1 0                112332336799


Q ss_pred             eEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          305 RSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ..+........+.+-+..|.|.+||+..
T Consensus       246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  246 RQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeEeccccceeeeeccCceEEEEEccC
Confidence            9999988888999999999999999976

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.10  E-value=11  Score=30.73  Aligned_cols=227  Identities=13%  Similarity=0.098  Sum_probs=109.6

Q ss_pred             EEEEccCCe-EEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc------ceeEEEEe
Q 019405           68 LAVARKNGL-TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------GKASMRSI  140 (341)
Q Consensus        68 l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------g~~~i~~~  140 (341)
                      ++.+-.-|+ ..++|....+...++...       .......--.|+.++        .++.++++      |.+-||+.
T Consensus        83 vafARrPGtf~~vfD~~~~~~pv~~~s~-------~~RHfyGHGvfs~dG--------~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          83 VAFARRPGTFAMVFDPNGAQEPVTLVSQ-------EGRHFYGHGVFSPDG--------RLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             EEEEecCCceEEEECCCCCcCcEEEecc-------cCceeecccccCCCC--------cEEEeecCCCCCCCceEEEEec
Confidence            666666666 678899887776665541       223333333444444        45544443      66777776


Q ss_pred             eecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC------------------CeEEEEECCCCceeeecCC
Q 019405          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG------------------VEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------~~v~i~d~~~~~~~~~~~~  202 (341)
                      ...       -..+-.|.. ++-.-..+.+.+||+.++.+...                  -.+.+.|..+++.+.+..-
T Consensus       148 r~~-------fqrvgE~~t-~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L  219 (366)
T COG3490         148 REG-------FQRVGEFST-HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL  219 (366)
T ss_pred             ccc-------cceeccccc-CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence            421       113333433 23334567788899988865321                  1122333333333322211


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE----EEEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCc
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV----RLYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSF  271 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i----~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~  271 (341)
                      +..     .+...+..++.  .+++..++-+-..|.-    -+--......++.-+..       -...|-+++.+.+..
T Consensus       220 p~~-----l~~lSiRHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g  292 (366)
T COG3490         220 PAS-----LRQLSIRHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG  292 (366)
T ss_pred             chh-----hhhcceeeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC
Confidence            100     01133555555  5555443332222110    00000000111222211       113466777776555


Q ss_pred             eEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          272 NIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       272 ~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      +++..+ ..+...+||..+|..+..-.-.   ....++-  ...-++..+.+|.+.++.
T Consensus       293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         293 LVALTSPRGNRAVIWDAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             eEEEecCCCCeEEEEEcCCCcEEeccccc---cccccee--ccCceEEecCCceEEecc
Confidence            555544 4566889999999887644322   1222332  333356666777777664

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.09  E-value=14  Score=31.88  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             eeEEEEEecCCCCEEEEEe-----------CCC-eEEEEEcCCC--Cc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          216 FTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQ--RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~-----------~d~-~i~iwd~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      ...++|  .++|+++++-.           ..+ .|.+++-.++  +. ....+...-.....+++.+++  |+++....
T Consensus        16 P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        16 PIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            567788  88888777643           223 6777765432  21 123333333456789999988  44444443


Q ss_pred             CEEEEECCC-------CeEE-eEEecc---ccCceeEEEecCCCCEEEEEe
Q 019405          281 DLASVDIRT-------GKLL-GCFIGK---CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       281 ~i~iwd~~~-------~~~~-~~~~~~---~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ..++.|...       .+.+ ..+...   +......++|.|||.+.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            333434431       1112 223221   123477899999998766555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=88.66  E-value=18  Score=32.59  Aligned_cols=144  Identities=10%  Similarity=-0.066  Sum_probs=67.0

Q ss_pred             CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--CeEEEEEcC
Q 019405          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTS  245 (341)
Q Consensus       173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~~i~iwd~~  245 (341)
                      ++.++++||.++     .+..||..+.+-.. +......      ......+..    ++...+.|+.+  ..+..||..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~------r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~  339 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSP------RLYASGVPA----NNKLYVVGGLPNPTSVERWFHG  339 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCch------hhcceEEEE----CCEEEEECCcCCCCceEEEECC
Confidence            345566776542     57778887654222 1111100      011222233    66777777754  357778865


Q ss_pred             CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEe
Q 019405          246 AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       246 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~  320 (341)
                      +.+- .+..+.........+  .-+|+..+.|+.++   .+..||.++.+....-.... .... ++ ..-++.+.+.|+
T Consensus       340 ~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG  415 (480)
T PHA02790        340 DAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR  415 (480)
T ss_pred             CCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC
Confidence            4320 111111011111112  22666777777553   47789988765433211110 1111 11 123555556553


Q ss_pred             CCCcEEEEEcCCCc
Q 019405          321 LDSYLRFWDIKTRQ  334 (341)
Q Consensus       321 ~dg~v~iwd~~~~~  334 (341)
                         .+.+||.++.+
T Consensus       416 ---~~e~ydp~~~~  426 (480)
T PHA02790        416 ---NAEFYCESSNT  426 (480)
T ss_pred             ---ceEEecCCCCc
Confidence               46677776543

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.48  E-value=25  Score=33.99  Aligned_cols=21  Identities=14%  Similarity=0.116  Sum_probs=17.8

Q ss_pred             CceEEEEccCCeEEEeeCCCC
Q 019405           65 DPLLAVARKNGLTDILNPLNG   85 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~   85 (341)
                      |+.|..|+.+|.+.+|.+.+.
T Consensus        26 ~~~l~vGt~~G~L~lY~i~~~   46 (877)
T KOG2063|consen   26 GNHLYVGTRDGDLYLYSIYER   46 (877)
T ss_pred             CCEEEEEcCCCcEEEEecccc
Confidence            346999999999999998754

>PF01011 PQQ: PQQ enzyme repeat family

Probab=88.01  E-value=1.4  Score=23.34  Aligned_cols=29  Identities=14%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++.++.+|.|...|.++|+.++.+....
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            45666999999999999999999887643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.93  E-value=23  Score=32.94  Aligned_cols=258  Identities=9%  Similarity=0.050  Sum_probs=126.3

Q ss_pred             cCCCCCceEEEEccCCeEEEeeCC-CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc-eeEE
Q 019405           60 DDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASM  137 (341)
Q Consensus        60 ~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~i  137 (341)
                      +.+|+.+.+-.|=....|.-|=+. +.+.+..+.-       +...-+.|+..+.....     ....+.|-.++ ..++
T Consensus        34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~~-----~~~~~~glt~rKk~~l  101 (670)
T PF10395_consen   34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSDG-----KKLYCVGLTERKKFKL  101 (670)
T ss_pred             ccCCCCceEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCCC-----cEEEEEEEeeCCeeEE
Confidence            334444455555444455444332 3444444443       23355556666544331     11455553443 3455


Q ss_pred             EEeeeccc--c-cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee--ecCCCCCCccCccC
Q 019405          138 RSIEVTKV--S-AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT  212 (341)
Q Consensus       138 ~~~~~~~~--~-~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~  212 (341)
                      -.+.....  . ..........+...-...+..+.+.++++.+++...+|.|.+||...+....  .+.....  ..+..
T Consensus       102 l~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~--~~v~y  179 (670)
T PF10395_consen  102 LLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS--INVSY  179 (670)
T ss_pred             EEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc--cceeh
Confidence            55544311  1 1112233445555557789999999999999999999999999993322211  1111110  00100


Q ss_pred             CeeeeEEEEEecCCCCEEEEEeC-C---CeEEEEEcCCCCceeEEEE---ecCCCeEEEEEcC-CCceEEEEeCCCCEEE
Q 019405          213 PTWFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEP-DSFNIYIGNGSGDLAS  284 (341)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~~~~~-d---~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~g~~dg~i~i  284 (341)
                      ...|.....  .....++++-+. +   -..+++.+......+..+.   .+........|+. +|. |+-= .++.|.+
T Consensus       180 s~fv~~~~~--~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~  255 (670)
T PF10395_consen  180 SKFVNDFEL--ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISS  255 (670)
T ss_pred             hhhhccccc--ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEE
Confidence            111221111  112344444443 2   2467777732222233333   2222333333433 443 3322 6779999


Q ss_pred             EECCCCeEEeEEecc---cc--CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          285 VDIRTGKLLGCFIGK---CS--GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       285 wd~~~~~~~~~~~~~---~~--~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      |++.+.+...++.-.   ..  ..+.++.--...+.|++  .++.|++.|+.-...+.
T Consensus       256 ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLs  311 (670)
T PF10395_consen  256 YSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILS  311 (670)
T ss_pred             EEcCCceEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence            999888876665432   01  23334432223334443  45689999987544443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>smart00564 PQQ beta-propeller repeat

Probab=87.66  E-value=1.5  Score=22.08  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          315 IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .++.++.+|.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777889999999999999988764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.52  E-value=8.3  Score=27.44  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCeEEEEEcC-----CCceEEEEeCCCCEEEEECCCCe
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      ......|++++.-|+|.|++.....       .++..+. -...|++++-.+     +...|+.|+ ...+..||+.+..
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~   84 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS   84 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence            4555678888888999999865421       1244444 345777776543     235666665 5579999998776


Q ss_pred             EEeEEeccccCceeEEEecC---CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          292 LLGCFIGKCSGSIRSIARHP---TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      -+.--..  .+.|+++.+-.   ...-|+..+-+..|.-||..-.+...++
T Consensus        85 d~Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   85 DLFYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             hhhhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            5542222  46677777643   1223555556677888887765655554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.40  E-value=2.1  Score=22.98  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 019405          311 PTLPIIASCG-LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       311 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~  339 (341)
                      |++++|..+. .++.|.++|..+++.+.++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            5667555544 5789999999998887765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.06  E-value=29  Score=33.30  Aligned_cols=224  Identities=10%  Similarity=0.056  Sum_probs=117.1

Q ss_pred             CCCCCceeeeecCCCCeEEEEEecCccCccceee-----eccCCCCCceeEEEeccCCCCCceEEEEccC---CeEEEee
Q 019405           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILN   81 (341)
Q Consensus        10 ~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~   81 (341)
                      |+.+.--+++....|.+++|....+  +.+....     .++..+.-++..++++...  |+.++.++.+   +.|++|.
T Consensus        58 P~~~K~A~i~Vt~nG~l~l~yQ~~~--~~~~~~s~~el~s~~~s~~~ithAsi~~~~~--g~~ili~t~s~~s~~l~~yr  133 (753)
T PF11635_consen   58 PGPAKSACIAVTRNGLLKLWYQKPD--GQWNESSTAELESLGSSDDLITHASIAPSDN--GKSILIATYSSLSKQLRFYR  133 (753)
T ss_pred             CCCCceEEEEEecCCeEEEEEEcCC--CccceeehhhhccccccccceeeceeeecCC--CCEEEEEEccccCCceEEEE
Confidence            3444456889999999999988443  2221211     1233455566666663333  3344444444   7899885


Q ss_pred             CCC--C--------cchheeec-cC-CC---C--CC--------CCCCceeeEeeeeccccccccccceeEEEcc----c
Q 019405           82 PLN--G--------DLRVAISN-AG-DS---G--AQ--------PEDDGIVGLHLFKRQREESSSRSRTLLTCTT----K  132 (341)
Q Consensus        82 ~~~--~--------~~~~~~~~-~~-~~---~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~  132 (341)
                      +.-  +        +....+.. +. ..   .  ..        ..-..++.+.+.+..... ......+++...    .
T Consensus       134 v~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~-~~~p~Ili~~~~~~~~~  212 (753)
T PF11635_consen  134 VQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDK-DSAPEILIVYSSPNTPS  212 (753)
T ss_pred             EEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCC-CCCCeEEEEEEcCCCCC
Confidence            431  1        11111111 00 00   0  00        012355667776622110 112223444332    3


Q ss_pred             ceeEEEEeeecccc-------------cccCCceEEEEEe----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          133 GKASMRSIEVTKVS-------------AESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       133 g~~~i~~~~~~~~~-------------~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                      ..+.-|.+......             ..........|..    ...+.|.++....-+..++....||+|.++|-.+.+
T Consensus       213 SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~  292 (753)
T PF11635_consen  213 SIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMK  292 (753)
T ss_pred             cEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcch
Confidence            46788887665321             1111222223322    223567888887788899999999999999998876


Q ss_pred             eeeec----CCCC------CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          196 KIWTA----KPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       196 ~~~~~----~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      .+...    ....      ...+.......+..++|  +|++.-++.-..+|.+.
T Consensus       293 ~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vaf--SPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  293 ELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAF--SPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             hhcccccccCCccccccccccccccccCCCCceEEE--CcccceEEEEecCCCce
Confidence            66544    1111      00011111123445778  88888888888888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.60  E-value=3.3  Score=21.90  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=18.7

Q ss_pred             cCCCeEEEEEcCCCceEEEEe-CC--CCEEEE
Q 019405          257 RETPIKAVAEEPDSFNIYIGN-GS--GDLASV  285 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~-~d--g~i~iw  285 (341)
                      ....-....|+|||+.|+-.+ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445567889999998776544 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.47  E-value=22  Score=31.32  Aligned_cols=31  Identities=19%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999999999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.44  E-value=12  Score=28.20  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCC------ceEEEEeCCCCEEEEECCC
Q 019405          259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       259 ~~v~~~~~~~~~------~~l~~g~~dg~i~iwd~~~  289 (341)
                      ..+.+++|||.|      -+|++-+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999954      4688889999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.23  E-value=17  Score=29.61  Aligned_cols=168  Identities=10%  Similarity=-0.005  Sum_probs=102.5

Q ss_pred             CCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                      .+.....|-+..+..-..++-.+||..-+++...+.|--.|..+++....--...         ..-..+..  .|++..
T Consensus        49 ~~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------a~Phgiv~--gpdg~~  117 (353)
T COG4257          49 PDGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------ASPHGIVV--GPDGSA  117 (353)
T ss_pred             CCCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---------CCCceEEE--CCCCCe
Confidence            4445566666666777788889999888888888888888888887654433222         11334445  677776


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCcee
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      -++-+.. -|.-.|-++.+  +..+..    .........|.+.|.+-+++... .---.|.. ...+..+.......-+
T Consensus       118 Witd~~~-aI~R~dpkt~e--vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa-~~~i~vfpaPqG~gpy  192 (353)
T COG4257         118 WITDTGL-AIGRLDPKTLE--VTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPA-RNVISVFPAPQGGGPY  192 (353)
T ss_pred             eEecCcc-eeEEecCcccc--eEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCcc-cCceeeeccCCCCCCc
Confidence            6664433 45556665544  333322    23456778899999888887632 11111211 1223444443345567


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      .|+..|+|....+.-.+..|-.-|..++
T Consensus       193 Gi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         193 GICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             ceEECCCCcEEEEeccccceEEcccccC
Confidence            7888888887777666666666665554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.93  E-value=18  Score=29.86  Aligned_cols=258  Identities=10%  Similarity=0.016  Sum_probs=126.2

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----CcchheeeccCC-CCCCCCCCceeeEeeeecccccc---
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREES---  119 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---  119 (341)
                      |..+...-.|....+|.+.+-++...-+...+||...    +.. ..+...-+ ...+......+.+.+.....=..   
T Consensus        17 ~tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~-~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~   95 (336)
T TIGR03118        17 IVDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ-DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE   95 (336)
T ss_pred             ccCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCc-cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence            3334333344444555555777777788999999861    111 11111101 00111123344444432211000   


Q ss_pred             -ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce-EEEEecC--CCCEEEE-eeCCCeEEEEECCCC
Q 019405          120 -SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-AFSKVDI--SEKFSLF-GGKGVEVNVWDLDKC  194 (341)
Q Consensus       120 -~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i-~~~~~~~--~~~~l~~-~~~d~~v~i~d~~~~  194 (341)
                       ......++.++++|+|.-|........   ....+.+++....+.| ..+++..  .+.+|+. =-..++|.+||-.-.
T Consensus        96 g~~~~a~Fif~tEdGTisaW~p~v~~t~---~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        96 GITGPSRFLFVTEDGTLSGWAPALGTTR---MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             CcccceeEEEEeCCceEEeecCcCCccc---ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence             012236889999999999985433310   0012233343322333 3445442  3455544 345788888885422


Q ss_pred             cee--eecCCCCC----CccCccCCeeeeEEEEE-ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCCCeEEEE
Q 019405          195 EKI--WTAKPPPK----NSLGIFTPTWFTSAAFL-SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVA  265 (341)
Q Consensus       195 ~~~--~~~~~~~~----~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~  265 (341)
                      +..  ..+..+..    .++.+..-+.-.-+.|. ..++...=+.+..-|.|-+||... + .++.+..  .-..-+.|+
T Consensus       173 ~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~-l~~r~as~g~LNaPWG~a  250 (336)
T TIGR03118       173 PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-Q-LLRRVASSGRLNAPWGLA  250 (336)
T ss_pred             cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-c-EEEEeccCCcccCCceee
Confidence            211  11111100    01111000111111221 022333333444567899999885 3 3555532  122345677


Q ss_pred             EcC------CCceEEEEeCCCCEEEEECCCCeEEeEEecccc-----CceeEEEecC
Q 019405          266 EEP------DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHP  311 (341)
Q Consensus       266 ~~~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~  311 (341)
                      ..|      .+.+|+--..||+|..||..+++.+..+.....     ..++.|.|..
T Consensus       251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            655      456666666799999999999998887765422     2467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=85.92  E-value=17  Score=29.52  Aligned_cols=148  Identities=13%  Similarity=0.028  Sum_probs=85.0

Q ss_pred             CceEEEEecCCCCEEEEeeCC---------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  233 (341)
                      .......|++.|++-+++...         +.|++|+.-.+                   ...+.++.  .|+|..-++.
T Consensus       148 ~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------------------~gpyGi~a--tpdGsvwyas  206 (353)
T COG4257         148 ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG-------------------GGPYGICA--TPDGSVWYAS  206 (353)
T ss_pred             CcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC-------------------CCCcceEE--CCCCcEEEEe
Confidence            346677888888888876421         22333333211                   12445566  7899888887


Q ss_pred             eCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE-EeEEeccccCceeEEEecC
Q 019405          234 TNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       234 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~  311 (341)
                      -.++.|-..|...+...+... .........+--+|.|+.-++....+.+..||..+... ...+.+. ...-.++....
T Consensus       207 lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~  285 (353)
T COG4257         207 LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDR  285 (353)
T ss_pred             ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeecc
Confidence            778888888877653212111 11122345565678888888888888899988775442 2233333 33445555555


Q ss_pred             CCCEEEEEeCCCcEEEEEcCC
Q 019405          312 TLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       312 ~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .++.-++--..|.|.-||.++
T Consensus       286 ~grVW~sea~agai~rfdpet  306 (353)
T COG4257         286 HGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             CCcEEeeccccCceeecCccc
Confidence            555444433445555555544

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.82  E-value=26  Score=31.51  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC---eEEEEEcCCCceEEEEeC-------------CCCEEEEEC
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP---IKAVAEEPDSFNIYIGNG-------------SGDLASVDI  287 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~  287 (341)
                      -++|.+++...  ..++.+|+.. +. +..+......   -..+..-|+|.+|+.+..             ...|..+| 
T Consensus       156 l~nG~ll~~~~--~~~~e~D~~G-~v-~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-  230 (477)
T PF05935_consen  156 LPNGNLLIGSG--NRLYEIDLLG-KV-IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-  230 (477)
T ss_dssp             -TTS-EEEEEB--TEEEEE-TT---E-EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred             cCCCCEEEecC--CceEEEcCCC-CE-EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-
Confidence            57787776554  7888888874 32 4444332211   245777899988887772             12366667 


Q ss_pred             CCCeEEeEEecc------cc--------------------CceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          288 RTGKLLGCFIGK------CS--------------------GSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       288 ~~~~~~~~~~~~------~~--------------------~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+|+.+..+...      ..                    --++++.+.+ ++.+|+++-.-..|...|.++++....+
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            777766654311      00                    1378899999 5555666555558999998888877654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.36  E-value=26  Score=31.11  Aligned_cols=105  Identities=11%  Similarity=0.079  Sum_probs=58.0

Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEE----E-ecCCCeEEEEEcCCC------ceEEEEe------
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSF----D-FRETPIKAVAEEPDS------FNIYIGN------  277 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~----~-~~~~~v~~~~~~~~~------~~l~~g~------  277 (341)
                      ...++|  .|++++|++--..|.|++++..+... .+..+    . ..+.....|+++|+-      .+|++..      
T Consensus        32 Pw~maf--lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        32 PWALLW--GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             ceEEEE--cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            567889  78887776654469999998654321 12111    1 134668899999873      3455543      


Q ss_pred             ----CCCCEEEEECCCC-------eEE-eEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          278 ----GSGDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       278 ----~dg~i~iwd~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                          ....|.-|.+...       +.+ ..+.......-..|+|.|||.++++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                1223444544311       111 11211101124468899999977766554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.85  E-value=3  Score=22.06  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=23.2

Q ss_pred             eEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405          272 NIYIGNGSGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       272 ~l~~g~~dg~i~iwd~~~~~~~~~~~~  298 (341)
                      .+++++.+|.|+-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456679999999999999999988875

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.35  E-value=20  Score=28.81  Aligned_cols=136  Identities=13%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCC---CeEEEEECCC---CceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                      +++-..+.+...+..-.+-+||+++.+|+..   ..+++++..+   .....+...      .+....|-..+..  -+|
T Consensus        57 ~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~------~m~~~RWYpT~~~--L~D  128 (243)
T PF07250_consen   57 TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN------DMQSGRWYPTATT--LPD  128 (243)
T ss_pred             cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc------cccCCCccccceE--CCC
Confidence            3443333333333333566899999998763   3477777543   111111110      0122344444444  478


Q ss_pred             CCEEEEEeCCCe-EEEEEcCCC-CceeE--EEEe-----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          227 HRKFVAGTNDHQ-VRLYDTSAQ-RRPVM--SFDF-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       227 ~~~l~~~~~d~~-i~iwd~~~~-~~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      |+.|+.|+.+.. ..+|.-... .....  .+..     ...--..+-..|+|++++.+..+  -.|||..+.+.++.+.
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence            999998887643 344443221 11111  1110     11122346668999999888765  4566888887766665


Q ss_pred             c
Q 019405          298 G  298 (341)
Q Consensus       298 ~  298 (341)
                      .
T Consensus       207 ~  207 (243)
T PF07250_consen  207 D  207 (243)
T ss_pred             C
Confidence            4

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.23  E-value=23  Score=29.53  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      .+.+..+.-++++.+++++.......-||-...  .+......       ....|..+.|  .|++.+.+.+ ..|.|+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~~r~-------~~~riq~~gf--~~~~~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPHNRN-------SSRRIQSMGF--SPDGNLWMLA-RGGQIQF  211 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEEE---------SSS-EEEEEE---TTS-EEEEE-TTTEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEEccC-------ccceehhcee--cCCCCEEEEe-CCcEEEE
Confidence            356778888899999998877776777875421  11111100       1255999999  7887776654 8888888


Q ss_pred             EEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec--cccCceeEEEecCC
Q 019405          242 YDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPT  312 (341)
Q Consensus       242 wd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~  312 (341)
                      =+....   ...+..       ....+..++|.+++...++|+. |.+ +.....|+-=.+.+.  .....++.+.|.+.
T Consensus       212 s~~~~~---~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  212 SDDPDD---GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EE-TTE---EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             ccCCCC---ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            762221   222221       2224788999988877776654 443 334555544333322  11456889999766


Q ss_pred             CCEEEEEeCCCcEEEE
Q 019405          313 LPIIASCGLDSYLRFW  328 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iw  328 (341)
                      .+-++. +.+|.|.-|
T Consensus       287 ~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  287 DKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             TEEEEE--STTEEEEE
T ss_pred             CceEEE-CCCcEEEEe
Confidence            554544 478876554

>PRK13684 Ycf48-like protein; Provisional

Probab=84.21  E-value=25  Score=29.90  Aligned_cols=107  Identities=9%  Similarity=-0.064  Sum_probs=58.4

Q ss_pred             eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE
Q 019405          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~  292 (341)
                      ..+..+.+  .+++.+++++ ..|.+..- .+.+...-.... .-...++++.+.++++.+++| ..|.+++=....++.
T Consensus       173 g~~~~i~~--~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        173 GVVRNLRR--SPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             ceEEEEEE--CCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45788888  6777666555 45554432 112211122222 234578899999999877765 456654323333332


Q ss_pred             EeEEecc---ccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          293 LGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       293 ~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      -.....+   ....+.++.+.|++..++.+ .+|.+.
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~  283 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL  283 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence            2211111   12457889999987765544 566544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.97  E-value=18  Score=28.09  Aligned_cols=151  Identities=16%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             CCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          173 SEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       173 ~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      ++.++.+.+.  ...|+.||+++++.+..-.-.....+..+    ++.     ..+ .+....-.+|.-..+|.++.+. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEG----it~-----~gd-~~y~LTw~egvaf~~d~~t~~~-  123 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEG----ITK-----LGD-YFYQLTWKEGVAFKYDADTLEE-  123 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccc----eee-----ccc-eEEEEEeccceeEEEChHHhhh-
Confidence            3455555544  34699999999988876554422222111    111     011 1222234678888899887654 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe----ccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI----GKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      +..+... +.=+.++.  ++..|+.++....++.-|.++.....++.    +..-..++.+.|- +|...|-.=.+..|.
T Consensus       124 lg~~~y~-GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~  199 (262)
T COG3823         124 LGRFSYE-GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIA  199 (262)
T ss_pred             hcccccC-Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceE
Confidence            4444322 33345543  55567777767778888877655444332    2111233444443 555555444555566


Q ss_pred             EEEcCCCceeee
Q 019405          327 FWDIKTRQLLSA  338 (341)
Q Consensus       327 iwd~~~~~~~~~  338 (341)
                      .-|.++|+.+..
T Consensus       200 rI~p~sGrV~~w  211 (262)
T COG3823         200 RIDPDSGRVVAW  211 (262)
T ss_pred             EEcCCCCcEEEE
Confidence            666666666543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.38  E-value=13  Score=28.07  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=25.9

Q ss_pred             CceeEEEecCCC------CEEEEEeCCCcEEEEEcCC
Q 019405          302 GSIRSIARHPTL------PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       302 ~~i~~~~~~~~~------~~l~s~~~dg~v~iwd~~~  332 (341)
                      ..|.+++|||.|      -+|+....++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954      2789999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.16  E-value=0.15  Score=44.04  Aligned_cols=231  Identities=10%  Similarity=-0.004  Sum_probs=118.7

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      -++.++.+..+..||-.. +.......         ......++|-..       ++..++.+...+.+.+|+++.....
T Consensus        48 nlavaca~tiv~~YD~ag-q~~le~n~---------tg~aldm~wDke-------gdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   48 NLAVACANTIVIYYDKAG-QVILELNP---------TGKALDMAWDKE-------GDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             ceehhhhhhHHHhhhhhc-ceecccCC---------chhHhhhhhccc-------cchhhhhhhcCCCeeechhhhhhHH
Confidence            488888899999998643 33222221         133333444321       2226777778889999998654311


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                            ++ .....+...  -+.|++....++.+-..|.+.+++..+.+.......+         ..++.++++  .+.
T Consensus       111 ------qL-E~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh---------~RRgtq~av--~lE  170 (615)
T KOG2247|consen  111 ------QL-ESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH---------QRRGTQIAV--TLE  170 (615)
T ss_pred             ------HH-hccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhccc---------ccceeEEEe--ccc
Confidence                  00 000011111  2567777788888888899999998877665544433         255888888  555


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC----CeEEE---EEcCCCceEEEEeCCCCEEEE----ECCCCeEEeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAV---AEEPDSFNIYIGNGSGDLASV----DIRTGKLLGC  295 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~v~~~---~~~~~~~~l~~g~~dg~i~iw----d~~~~~~~~~  295 (341)
                      + +.+.++.|..+.+-...+..  .........    ....+   .|..-|..+.+.= .|.+.+.    +-.++..--.
T Consensus       171 d-~vil~dcd~~L~v~~qeget--a~ltevggepdnm~~~y~k~n~w~kage~m~sVv-sgKkhl~yak~nE~D~pval~  246 (615)
T KOG2247|consen  171 D-YVILCDCDNTLSVTTQEGET--ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVV-SGKKHLMYAKYNELDEPVALQ  246 (615)
T ss_pred             c-eeeecCcHHHHHHhhhccce--eeeeeccCccchhhhheeeeeccccccceeeeee-ecHHHHHHHhhcCCCCccceE
Confidence            5 55666666555443322211  111111100    00011   1222232222211 1111111    1111111115


Q ss_pred             EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       296 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ++.. .+.+.+..|--||..+ .+-.-|.|..-.+.+++..+++|
T Consensus       247 fq~~-~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  247 FQEK-YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             eeec-CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHHH
Confidence            5554 6788899998887544 34444555555577777666654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.92  E-value=26  Score=29.08  Aligned_cols=77  Identities=10%  Similarity=0.004  Sum_probs=45.7

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECC------CCc-eeeecCCCCCCccCccCCeeeeEEEEEe------cCC----C
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLD------KCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDD----H  227 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~------~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~----~  227 (341)
                      -+.++++|.+.+-++....+...+||..      ..+ .+-.+......    ..+...+.+.|..      ...    .
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~----~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL----AAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC----CCCCCccEEEEeCCCceEEcCCCcccc
Confidence            3567889988888888788899999986      122 22222221110    0113355666621      111    1


Q ss_pred             CEEEEEeCCCeEEEEEcC
Q 019405          228 RKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~  245 (341)
                      ..++.+++||+|.-|...
T Consensus       101 a~Fif~tEdGTisaW~p~  118 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPA  118 (336)
T ss_pred             eeEEEEeCCceEEeecCc
Confidence            236778899999999853

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.76  E-value=35  Score=30.58  Aligned_cols=83  Identities=13%  Similarity=0.008  Sum_probs=47.7

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEEC---------CCCceee---ecCCCCCCccCccCCeeeeEEEEEecC-CCCEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDL---------DKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKF  230 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~---------~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l  230 (341)
                      .|..+..++.|..++-.|.+|.+.++=.         +.++..-   .+.... ..+.....-.+..++|+|+. ....|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceE
Confidence            4667788999999999899986655431         1222211   111100 00000011236678895433 13566


Q ss_pred             EEEeCCCeEEEEEcCCC
Q 019405          231 VAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~  247 (341)
                      ..-+.|..||+||+...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            67778999999998764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.56  E-value=27  Score=28.98  Aligned_cols=181  Identities=11%  Similarity=0.055  Sum_probs=0.0

Q ss_pred             eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccc----cccccccceeEEEcccceeEEEEeeecccccccCC
Q 019405           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR----EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC  151 (341)
Q Consensus        76 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~  151 (341)
                      +|.+||+.+++.++++........  ....+..+..-....    .-      ..++=...+.+.|+|+.          
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~------aYItD~~~~glIV~dl~----------   96 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGF------AYITDSGGPGLIVYDLA----------   96 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEE------EEEEETTTCEEEEEETT----------
T ss_pred             EEEEEECCCCcEEEEEECChHHcc--cccccceEEEEccCCCCcceE------EEEeCCCcCcEEEEEcc----------


Q ss_pred             ceEEEEEeecC---------------------CceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCC--
Q 019405          152 STVKSWNVCAS---------------------GTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--  205 (341)
Q Consensus       152 ~~v~~~~~~~~---------------------~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~--  205 (341)
                       .-+.|.+.+.                     ..+..++.+|   +++.|+..... .-++|.+.+......-.....  
T Consensus        97 -~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~T~~L~~~~~~~~~~~  174 (287)
T PF03022_consen   97 -TGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVPTSVLRDPSLSDAQAL  174 (287)
T ss_dssp             -TTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-H
T ss_pred             -CCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEEHHHhhCccccccccc


Q ss_pred             --CccCccCCe-eeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC----CCceeEEEEec-CCCeEEEEEcC--CCceEEE
Q 019405          206 --NSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA----QRRPVMSFDFR-ETPIKAVAEEP--DSFNIYI  275 (341)
Q Consensus       206 --~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~  275 (341)
                        ....++... ....+++  +++|.++++--..+.|..|+..+    ....+...... -.....+.+.+  +|.+.+.
T Consensus       175 ~~~v~~lG~k~~~s~g~~~--D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  175 ASQVQDLGDKGSQSDGMAI--DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             HHT-EEEEE---SECEEEE--ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             cccceeccccCCCCceEEE--CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE


Q ss_pred             EeC
Q 019405          276 GNG  278 (341)
Q Consensus       276 g~~  278 (341)
                      ...
T Consensus       253 snr  255 (287)
T PF03022_consen  253 SNR  255 (287)
T ss_dssp             E-S
T ss_pred             ECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.87  E-value=30  Score=29.14  Aligned_cols=65  Identities=18%  Similarity=0.240  Sum_probs=34.6

Q ss_pred             CCCEEEEEeC-----CCeEEEEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCC----CEEEEECCCCeE
Q 019405          226 DHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKL  292 (341)
Q Consensus       226 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~  292 (341)
                      ++.+.+.|+.     ...+..||+.+.+  -..+..  ........+..-++++.+.|+.++    .+..||+.+.+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQE--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCC--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            5666666664     2357888887643  111211  111111222233566777777654    356889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=81.30  E-value=31  Score=28.83  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+.++...++|.+|++.-.-..|.+.|-++++.++.+.+.....+.+    .-...++  ..+-+++-.+..++.|.+||
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~----~~~~f~~--QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL----PATNFSW--QHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc----cCCcEee--ccCCEEeccCCCCCEEEEEc
Confidence            36777888899999999888899999999999999997763333322    0111223  33444444556788899998


Q ss_pred             cC
Q 019405          244 TS  245 (341)
Q Consensus       244 ~~  245 (341)
                      -.
T Consensus       219 N~  220 (299)
T PF14269_consen  219 NA  220 (299)
T ss_pred             CC
Confidence            63

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=81.24  E-value=58  Score=32.01  Aligned_cols=148  Identities=18%  Similarity=0.078  Sum_probs=0.0

Q ss_pred             eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEE
Q 019405          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~  253 (341)
                      .|+++|..+++.+..+........-.     +..+.|..++...+++++..           +|.++.|++-.....+.-
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~-----v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel  928 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFS-----VCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL  928 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhh-----eeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +...+-+-.-.+..|-..++++|-.+ .+++||+...++++...... ...|..+.+  .+..++.|...-.|.++..+.
T Consensus       929 lh~T~~~~~v~Ai~~f~~~~LagvG~-~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  929 LHKTEIPGPVGAICPFQGRVLAGVGR-FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             eeccCCCccceEEeccCCEEEEeccc-EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec


Q ss_pred             Cceeeeec
Q 019405          333 RQLLSAVC  340 (341)
Q Consensus       333 ~~~~~~~~  340 (341)
                      ....--.|
T Consensus      1006 ~~n~l~~f 1013 (1205)
T KOG1898|consen 1006 EDNQLIVF 1013 (1205)
T ss_pred             CCCeEEEE

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=80.97  E-value=56  Score=31.69  Aligned_cols=252  Identities=13%  Similarity=0.090  Sum_probs=119.5

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      .+.+++-+.+|.|+--+..+-.... ...... ......++.+......+...        .++..+..|.+.......-
T Consensus       496 e~~~vllS~~GyIKri~~~~~~~~~-~~~~g~s~~klKe~D~l~~~~~~~t~d--------~LllfTs~Grv~~l~~~~I  566 (800)
T TIGR01063       496 ENVVVTLSHNGYVKRVPVSAYRLQK-RGGKGVSGADMKDDDFIEQLLVASTHD--------YLLFFTNRGKVYWLKVYQI  566 (800)
T ss_pred             ceEEEEEcCCCEEEecchhhhhhhc-ccCcCccccccCCCCeeEEEEEecCCC--------eEEEEeCCCcEEEEEhhhC
Confidence            3468888899999988765422100 000000 00001234555444444444        6677777777766554332


Q ss_pred             ccccccCCce-E-EEEEeecCCc-eEEEEec--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          144 KVSAESSCST-V-KSWNVCASGT-IAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       144 ~~~~~~~~~~-v-~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      +.......|. + .+.....+.. +.++...  .+...++..+.+|.++-.++..-..... .  ....+.+.....+..
T Consensus       567 P~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r-~--G~~aiklke~D~lv~  643 (800)
T TIGR01063       567 PEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS-N--GIIAIKLDDGDELIS  643 (800)
T ss_pred             cCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc-C--CcccccCCCCCEEEE
Confidence            2211111111 1 1123333333 3344432  3456788899999999887754322111 0  000011111233444


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCC---C---ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC--
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---R---RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--  289 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--  289 (341)
                      +..  ......++..+..|.+..+....-   .   ..+..+.. ....|.++..-.+...++..+..|.++...+..  
T Consensus       644 v~~--~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~  721 (800)
T TIGR01063       644 VRL--TSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYR  721 (800)
T ss_pred             EEE--eCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcc
Confidence            433  233445666667787766654321   0   01111111 223354444334455677888888888776431  


Q ss_pred             -----CeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          290 -----GKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       290 -----~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                           ++-+.  .+... .+.+..+....+...++..+.+|.+..++..
T Consensus       722 ~~~R~~kGv~~ikl~~~-~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       722 ETSRGGKGVKSIKITDR-NGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             ccCCCCcceEEEEccCC-CCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence                 22222  22222 2344444444444456666777777666654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=80.49  E-value=25  Score=27.41  Aligned_cols=110  Identities=15%  Similarity=0.022  Sum_probs=57.7

Q ss_pred             eEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc------eeEEE
Q 019405           67 LLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG------KASMR  138 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------~~~i~  138 (341)
                      .|..+...+.|.+|++.+.  +.+..+...         +.+..+.+...++        ++++--++.      .+++|
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------~~V~~l~y~~~GD--------YlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---------GRVLQLVYSEAGD--------YLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch---------hheeEEEeccccc--------eEEEEEeecCCccceEEEEE
Confidence            3545466788999999833  334444432         6666666666555        666553332      22333


Q ss_pred             E-eeeccc-------------cc----ccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          139 S-IEVTKV-------------SA----ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       139 ~-~~~~~~-------------~~----~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                      - .+....             .+    ......+.+.++.-.....+++..|-..-|+.|+. +.+.+|.+...
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~  165 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ  165 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence            1 111100             00    00111344444444556778888775444555544 48999988643

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.16  E-value=59  Score=31.43  Aligned_cols=168  Identities=13%  Similarity=0.122  Sum_probs=95.7

Q ss_pred             EEEEEeecCCceEEEEec---C----CCCEEEEeeCCCeEEEEECCCCce---------------eeecCCCCCCccCcc
Q 019405          154 VKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKCEK---------------IWTAKPPPKNSLGIF  211 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~---~----~~~~l~~~~~d~~v~i~d~~~~~~---------------~~~~~~~~~~~~~~~  211 (341)
                      -..|.+..+.+|..|+|.   .    ...+|++- ....+.|+...-.+.               +..+.....      
T Consensus        71 ~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t------  143 (765)
T PF10214_consen   71 SGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT------  143 (765)
T ss_pred             cceeEcCCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhc------
Confidence            345776678899999997   2    22455544 444677777322111               111111110      


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecC----------CCeEEEEEcCCCceEEEEe
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRE----------TPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~----------~~v~~~~~~~~~~~l~~g~  277 (341)
                      .......++|+| .+...||+....|.-.|||+....    ..+.....+.          ..-..+.|.++-..|++++
T Consensus       144 gg~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  144 GGFPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CCCccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            123466788953 345689999999999999992211    1111111111          2234688988877777765


Q ss_pred             CCCCEEEEECCCCeEEe-EEeccccCceeEEEecCCC--CEEEEEeCCCcEEEEEcCC
Q 019405          278 GSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~v~iwd~~~  332 (341)
                      . ..+.++|+++..... .........|..+.-+|..  ..++-.  ...|...++.+
T Consensus       223 r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  223 R-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             C-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            4 578999998775532 2222125678888888873  333322  24566667665

These proteins are found in fungi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-05

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
           VDIS    +     ++ ++  WDL+  ++I +    P ++  + F+P            D
Sbjct: 86  VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 133
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
            +    GT+  +V ++   + ++   S D R   I ++A  PD   +  G   G +   D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
           I TGKLL    G     IRS+   P   ++ +   D Y++ +D++   L
Sbjct: 193 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.51
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.41
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.39
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.3
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.29
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.14
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.07
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.02
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.99
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.93
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.89
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.6
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.52
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.19
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.17
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.16
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.97
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.97
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.95
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.85
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.67
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.44
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.42
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.33
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.31
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.26
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.13
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.02
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.56
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.08
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.42
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.25
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.91
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.78
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.76
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.83
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	93.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.48
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.3
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.27
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	93.05
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	93.04
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.52
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	91.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.52
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	91.03
3ott_A	758	Two-component system sensor histidine kinase; beta	90.5
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.31
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.92
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.51
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.14
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.9
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.58
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.36
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.49
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.3
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	85.69
3ott_A	758	Two-component system sensor histidine kinase; beta	83.83
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.27
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	83.12
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	82.19
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	82.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	81.7
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	80.27

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-44  Score=300.35  Aligned_cols=272  Identities=17%  Similarity=0.128  Sum_probs=236.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.+++|++...   ...+...+.+|...+.+++++++..    ++++++.|++|++||+.+++.+..+..+
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~~~~~~~----~l~s~s~D~~i~lWd~~~~~~~~~~~~~  121 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVDISHTLP----IAASSSLDAHIRLWDLENGKQIKSIDAG  121 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEEECCCCC----EEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence            46899999999999999875   1123446788999999999887665    8999999999999999999888877653


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                              ...+.++.+.+...        .+++++.+|.+.+|++....        ...... .+...+.+++|+|++
T Consensus       122 --------~~~~~~~~~spdg~--------~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg  176 (321)
T 3ow8_A          122 --------PVDAWTLAFSPDSQ--------YLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG  176 (321)
T ss_dssp             --------TTCCCCEEECTTSS--------EEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred             --------CccEEEEEECCCCC--------EEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence                    34566677666555        89999999999999986433        333333 356689999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ++|++++.|+.|++||+++++.+..+..+.         ..|.+++|  +|++++|++++.|++|++||+++.+. +..+
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~--spd~~~l~s~s~dg~i~iwd~~~~~~-~~~~  244 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHANL-AGTL  244 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEE--CTTSCEEEEECTTSCEEEEETTTCCE-EEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEE--cCCCCEEEEEcCCCeEEEEECCCcce-eEEE
Confidence            999999999999999999999988887654         56999999  89999999999999999999998664 7888


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .+|...|.+++|+|++.+|++++.|+.|++||+++++++..+.+| ...|++++|+|++++|++++.|+.|++||..
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999999999998 8999999999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-44  Score=310.11  Aligned_cols=269  Identities=11%  Similarity=0.145  Sum_probs=236.7

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++++.||.|++|++...     +....+.+|...|.+++|++++.    +|++|+.|++|+|||+.+++++..+..  
T Consensus       122 ~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~~~~~~~----~l~sgs~D~~i~iwd~~~~~~~~~~~~--  190 (410)
T 1vyh_C          122 VMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISFDHSGK----LLASCSADMTIKLWDFQGFECIRTMHG--  190 (410)
T ss_dssp             EEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEEECTTSS----EEEEEETTSCCCEEETTSSCEEECCCC--
T ss_pred             EEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEeCCCCceeEEEcC--
Confidence            5788999999999998876     56668889999999999987655    899999999999999998888777765  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            |...+.++.+.+...        .+++++.|+.+++|++....        .+..+. .|...|.++.++|++.
T Consensus       191 ------h~~~V~~v~~~p~~~--------~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g~  247 (410)
T 1vyh_C          191 ------HDHNVSSVSIMPNGD--------HIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDGT  247 (410)
T ss_dssp             ------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTSS
T ss_pred             ------CCCCEEEEEEeCCCC--------EEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCCC
Confidence                  457788888877666        89999999999999986433        455554 4677899999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC--------------------CCEEEEEeC
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--------------------HRKFVAGTN  235 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~l~~~~~  235 (341)
                      ++++|+.|+.|++||+.+++....+..+.         ..|.+++|  +|+                    +.+|++|+.
T Consensus       248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~  316 (410)
T 1vyh_C          248 LIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGSR  316 (410)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             EEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEeC
Confidence            99999999999999999998888877654         56999999  554                    678999999


Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      |++|++||++++.. +..+.+|...|++++|+|++++|++|+.|+.|++||+.+++++..+.+| ...|++++|+|++++
T Consensus       317 D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          317 DKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPY  394 (410)
T ss_dssp             TSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSC
T ss_pred             CCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCCE
Confidence            99999999998764 8889999999999999999999999999999999999999999999998 899999999999999


Q ss_pred             EEEEeCCCcEEEEEcC
Q 019405          316 IASCGLDSYLRFWDIK  331 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~  331 (341)
                      |++++.|+.|++|+++
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-42  Score=288.35  Aligned_cols=258  Identities=15%  Similarity=0.185  Sum_probs=221.0

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      +..+|.+|...|.+++|++++.    +|++|+.||+|+|||+++++.+..+..        +..++.++.+.+...    
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~----~l~s~~~dg~v~lWd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~----   68 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVELWNYETQVEVRSIQV--------TETPVRAGKFIARKN----   68 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEEC--------CSSCEEEEEEEGGGT----
T ss_pred             eEEeecCCCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCceeEEeec--------cCCcEEEEEEeCCCC----
Confidence            4457888999999999998776    899999999999999999988887776        346788888777666    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeee
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWT  199 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~  199 (341)
                          .+++++.|+.+++|++....        .+..+. .|...|.+++|+|++++|++|+.|++|++||++++. ....
T Consensus        69 ----~l~s~s~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  135 (304)
T 2ynn_A           69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (304)
T ss_dssp             ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred             ----EEEEECCCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence                99999999999999986433        455554 467899999999999999999999999999998774 3444


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC--CCceEEEE
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--DSFNIYIG  276 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g  276 (341)
                      +..|.         ..|.+++|  +| ++.+|++|+.|++|++||++...........|...+..+.|+|  ++.+|++|
T Consensus       136 ~~~h~---------~~v~~v~~--~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  204 (304)
T 2ynn_A          136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA  204 (304)
T ss_dssp             ECCCC---------SCEEEEEE--CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred             hcccC---------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence            55543         66999999  77 6789999999999999999876653333445667899999987  67899999


Q ss_pred             eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.||.|++||++++++++++
T Consensus       205 s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          205 SDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence            99999999999999999999998 899999999999999999999999999999999988765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=290.64  Aligned_cols=262  Identities=15%  Similarity=0.244  Sum_probs=222.5

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh--eeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      +.....+|...|.+++|+++..+++++|++|+.|++|+||++.+++...  .+.+        |...+.++.+.+...  
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g--------h~~~v~~~~~~~~~~--   93 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG--------HQLGVVSVDISHTLP--   93 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECSSSS--
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc--------CCCCEEEEEECCCCC--
Confidence            4456778999999999999887778899999999999999997665432  2333        567788888776655  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                            .+++++.|+.+++|++....        .+..+.. +...+.+++|+|++++|++++.|+.|++||+++++...
T Consensus        94 ------~l~s~s~D~~i~lWd~~~~~--------~~~~~~~-~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           94 ------IAASSSLDAHIRLWDLENGK--------QIKSIDA-GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             ------EEEEEETTSEEEEEETTTTE--------EEEEEEC-CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred             ------EEEEEeCCCcEEEEECCCCC--------EEEEEeC-CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence                  89999999999999986433        4444443 45678899999999999999999999999999998887


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      .+..+.         ..+.+++|  +|++++|++++.|+.|++||+++++ .+..+.+|..+|.+++|+|++++|++|+.
T Consensus       159 ~~~~~~---------~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          159 SLDTRG---------KFILSIAY--SPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             EEECSS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred             EecCCC---------ceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence            776543         55899999  8999999999999999999999876 48889999999999999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      |+.|++||+++++++..+.+| ...|.+++|+|++++|++++.|+.|++||+++++++.+++
T Consensus       227 dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          227 DGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            999999999999999999998 8999999999999999999999999999999999988764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-41  Score=287.32  Aligned_cols=267  Identities=13%  Similarity=0.190  Sum_probs=225.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc----hhe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVA   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~   90 (341)
                      -.+++++.||.|++|++...     +.+..+..|...+.+++|++++.    +|++|+.|+.|++|++.+++.    ...
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~----~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTC-----CEEEEEECSSSCEEEEEECTTSS----EEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCC-----CcceEeecCCccEEEEEECCCCC----EEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            45788999999999998776     56667778999999999987765    899999999999999987542    223


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      +..        |.+.+.++.+.+ ..        .+++++.|+.+++|++....        .+..+. .|...|.+++|
T Consensus       139 ~~~--------h~~~v~~~~~~~-~~--------~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~  192 (340)
T 1got_B          139 LAG--------HTGYLSCCRFLD-DN--------QIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSL  192 (340)
T ss_dssp             EEC--------CSSCEEEEEEEE-TT--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEE
T ss_pred             ecC--------CCccEEEEEECC-CC--------cEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEE
Confidence            333        446677776643 33        78999999999999986433        344443 46788999999


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      +|+++++++|+.|+.|++||+++++....+..+.         ..|.+++|  +|++++|++++.|++|++||++..+. 
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~d~~v~iwd~~~~~~-  260 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE-  260 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence            9999999999999999999999998888887654         56999999  89999999999999999999998653 


Q ss_pred             eEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          251 VMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       251 ~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      +..+..  +...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|.+++|+|++.+|++++.|+.|++|
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            555542  2247999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             E
Q 019405          329 D  329 (341)
Q Consensus       329 d  329 (341)
                      |
T Consensus       340 d  340 (340)
T 1got_B          340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-41  Score=281.88  Aligned_cols=274  Identities=14%  Similarity=0.083  Sum_probs=230.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.+++|++...     +.+..+..|..++.+++|++++.    +|++|+.|++|++||+.+++.+..+.. 
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----~l~s~s~d~~i~vwd~~~~~~~~~~~~-   95 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTETPVRAGKFIARKN----WIIVGSDDFRIRVFNYNTGEKVVDFEA-   95 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEEEGGGT----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCCcEEEEEEeCCCC----EEEEECCCCEEEEEECCCCcEEEEEeC-
Confidence            35788999999999998876     56677888999999999998877    899999999999999999998888876 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-C
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~  173 (341)
                             |.+.+.++.+.+...        .+++++.|+.+++|++.....       ....+ ..|...|.+++|+| +
T Consensus        96 -------h~~~v~~~~~~~~~~--------~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           96 -------HPDYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             -------CSSCEEEEEECSSSS--------EEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred             -------CCCcEEEEEEcCCCC--------EEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence                   457788888877666        899999999999999864321       22233 34678899999999 6


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      +.+|++|+.|++|++||++++.....+....        ...+..+.|.|.+++.+|++++.|++|++||+++++. +..
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~  223 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VAT  223 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-cee
Confidence            7899999999999999998876655544322        2458888996566888999999999999999998664 889


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC--EEEEEeCCCcEEEEEcC
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIK  331 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~  331 (341)
                      +.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..| ...+++++|+|++.  ++++++.| .+.+|++.
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~  301 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDN-GFTVLSLG  301 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence            9999999999999999999999999999999999999999999987 88999999999885  46776655 57888876


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      +
T Consensus       302 ~  302 (304)
T 2ynn_A          302 N  302 (304)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-42  Score=287.75  Aligned_cols=249  Identities=13%  Similarity=0.116  Sum_probs=203.7

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ++..|.+++|+++..     |++|+.||+|+|||+++++.+......    ...|.+.+.++.+.+...        .|+
T Consensus        81 ~~~~v~~~~~s~d~~-----l~~~s~dg~v~lWd~~~~~~~~~~~~~----~~~H~~~V~~v~~spdg~--------~l~  143 (344)
T 4gqb_B           81 TEAGVADLTWVGERG-----ILVASDSGAVELWELDENETLIVSKFC----KYEHDDIVSTVSVLSSGT--------QAV  143 (344)
T ss_dssp             ESSCEEEEEEETTTE-----EEEEETTSEEEEEEECTTSSCEEEEEE----EECCSSCEEEEEECTTSS--------EEE
T ss_pred             cCCCEEEEEEeCCCe-----EEEEECCCEEEEEeccCCCceeEeecc----ccCCCCCEEEEEECCCCC--------EEE
Confidence            567799999998744     999999999999999998876554421    013568899998877666        999


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      +++.|+.+++|++....        .+..+. .|...|.+++|++++ .++++++.|++|++||+++++....+....  
T Consensus       144 sgs~d~~i~iwd~~~~~--------~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--  212 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQV--------VLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA--  212 (344)
T ss_dssp             EEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred             EEeCCCeEEEEECCCCc--------EEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce--
Confidence            99999999999986443        444444 477899999999987 478999999999999999998887765433  


Q ss_pred             ccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEE
Q 019405          207 SLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLAS  284 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i  284 (341)
                           +...+.+++|  +| ++++|++|+.|++|++||+++++. +..+.+|...|++++|+|++ ++|++|+.|+.|+|
T Consensus       213 -----~~~~~~~~~~--~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v  284 (344)
T 4gqb_B          213 -----PGYLPTSLAW--HPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV  284 (344)
T ss_dssp             ------CCCEEEEEE--CSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             -----eeccceeeee--cCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence                 1245889999  55 567889999999999999998764 88999999999999999998 67999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ||+++++++ .+.+| .+.|++++|+|+++ +|++++.|++|++|++.+..
T Consensus       285 wd~~~~~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          285 LDSSLSELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECTTCCEEE-EECCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EECCCCcEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            999998765 56787 89999999999987 57799999999999998754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-41  Score=293.42  Aligned_cols=255  Identities=13%  Similarity=0.226  Sum_probs=225.5

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ..+.+|..+|++++|++++.    +|++|+.||+|+|||+.+++....+..        |.+.+.++.+.+...      
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~vwd~~~~~~~~~l~~--------h~~~V~~v~~~~~~~------  163 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKG--------HTDSVQDISFDHSGK------  163 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECC--------CSSCEEEEEECTTSS------
T ss_pred             EeecccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEEec--------cCCcEEEEEEcCCCC------
Confidence            35667999999999988766    899999999999999999998888876        457788888876555      


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                        .+++++.|+.+++|++....        .++.+. .|...|.+++|+|+++++++++.|++|++||+++++.+..+..
T Consensus       164 --~l~sgs~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  232 (410)
T 1vyh_C          164 --LLASCSADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG  232 (410)
T ss_dssp             --EEEEEETTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             --EEEEEeCCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Confidence              99999999999999985432        334333 3677899999999999999999999999999999998888876


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC-------------
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-------------  269 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------  269 (341)
                      +.         .+|.++.|  ++++.+|++++.|++|++||+++++. ...+..|...|.+++|+|+             
T Consensus       233 h~---------~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~  300 (410)
T 1vyh_C          233 HR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSE  300 (410)
T ss_dssp             CS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred             CC---------ccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence            54         66999999  89999999999999999999998764 7888899999999999996             


Q ss_pred             -------CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          270 -------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       270 -------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                             +.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++++|++++.|+.|++||+.+++++.++
T Consensus       301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~  376 (410)
T 1vyh_C          301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  376 (410)
T ss_dssp             -------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence                   668999999999999999999999999998 899999999999999999999999999999999887765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-40  Score=277.07  Aligned_cols=275  Identities=9%  Similarity=0.105  Sum_probs=228.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.+++|++..........+..+.+|...+.+++|++++.    +|++|+.|++|+|||+.+++.+..+.. 
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~----~l~s~s~D~~v~~wd~~~~~~~~~~~~-  105 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA----YALSASWDKTLRLWDVATGETYQRFVG-  105 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC----EEEEEeCCCEEEEEECCCCCeeEEEcc-
Confidence            458899999999999998642222245667889999999999987766    899999999999999999998888876 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-  173 (341)
                             |...+.++.+.+...        .+++++.|+.+++|++..         ..+..+. .|...|.++.+.|. 
T Consensus       106 -------h~~~v~~~~~~~~~~--------~l~s~s~D~~i~vwd~~~---------~~~~~~~-~h~~~v~~~~~~~~~  160 (319)
T 3frx_A          106 -------HKSDVMSVDIDKKAS--------MIISGSRDKTIKVWTIKG---------QCLATLL-GHNDWVSQVRVVPNE  160 (319)
T ss_dssp             -------CSSCEEEEEECTTSC--------EEEEEETTSCEEEEETTS---------CEEEEEC-CCSSCEEEEEECCC-
T ss_pred             -------CCCcEEEEEEcCCCC--------EEEEEeCCCeEEEEECCC---------CeEEEEe-ccCCcEEEEEEccCC
Confidence                   457788888776555        899999999999999742         2333333 46778999999884 


Q ss_pred             -----CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       174 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                           +..+++++.|+.|++||+++.+....+..|.         ..|.+++|  +|++++|++++.|+.|++||+.+.+
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~--sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence                 4589999999999999999988887777654         56999999  8999999999999999999999865


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------ccCceeEEEecCCCCEEEEEeC
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      . +..+.. ..+|.+++|+|++.+|++++.+ .+++|++..+..+..+..+       +...+.+++|+|+|++|++++.
T Consensus       230 ~-~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~  306 (319)
T 3frx_A          230 A-MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT  306 (319)
T ss_dssp             E-EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred             E-EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence            4 677764 4689999999999999888755 5999999988777666432       2567899999999999999999


Q ss_pred             CCcEEEEEcCCC
Q 019405          322 DSYLRFWDIKTR  333 (341)
Q Consensus       322 dg~v~iwd~~~~  333 (341)
                      |+.|++||+.++
T Consensus       307 Dg~i~vWd~~t~  318 (319)
T 3frx_A          307 DNVIRVWQVMTA  318 (319)
T ss_dssp             TSCEEEEEEEEC
T ss_pred             CceEEEEEEeec
Confidence            999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-41  Score=290.75  Aligned_cols=283  Identities=13%  Similarity=0.143  Sum_probs=226.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++...     +....+..|...+..++|++++.    +|++|+.|+.|+||++.+........ .
T Consensus        79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~v~~~~~s~~g~----~las~~~d~~v~iw~~~~~~~~~~~~-~  148 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPWVMECAFAPNGQ----SVACGGLDSACSIFNLSSQADRDGNM-P  148 (380)
T ss_dssp             SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTTCCCCEECTTSS----EEEECCSSSCCEEEECCCCSSCCCSS-T
T ss_pred             CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCCEEEEEECCCCC----EEEEeeCCCcEEEEECCCCccccCCc-c
Confidence            45889999999999998776     56667888999999999987766    89999999999999997532110000 0


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE----eecCCceEEEEe
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSKV  170 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~----~~~~~~i~~~~~  170 (341)
                      .......|.+.+.++.+.+....       .+++++.|+.+++|++....        .+..+.    ..|...|.++++
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~~-------~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQET-------RLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSSS-------CEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEEE
T ss_pred             ceeeccCCCcceEEEEEecCCCC-------EEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEEe
Confidence            00011235566777777665442       79999999999999986543        344442    235678999999


Q ss_pred             cC-CCCEEEEeeCCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          171 DI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       171 ~~-~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      ++ +++++++|+.|+.|++||++ ..+.+..+..|.         ..|.+++|  +|++.+|++++.|++|++||+++++
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKF--FPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEE--CTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEE--ecCCCeEEEEcCCCeEEEEECCCCc
Confidence            77 88999999999999999998 445566666543         66999999  8999999999999999999999876


Q ss_pred             ceeEEEEecC-------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE----eccccCceeEEEecCCCCEEE
Q 019405          249 RPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       249 ~~~~~~~~~~-------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      . +..+..+.       ..|++++|+|+|++|++|+.||.|++||+.+++.+..+    .+| .+.|++++|+|++.+|+
T Consensus       283 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          283 Q-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC  360 (380)
T ss_dssp             E-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred             E-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence            4 66665432       24899999999999999999999999999999888777    456 89999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCce
Q 019405          318 SCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~  335 (341)
                      +|+.|+.|++|++..++.
T Consensus       361 sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EECTTSCEEEEECCSSSS
T ss_pred             EeeCCCCEEEEecCCCcc
Confidence            999999999999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-40  Score=280.67  Aligned_cols=268  Identities=14%  Similarity=0.193  Sum_probs=225.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------ch
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR   88 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~   88 (341)
                      -++++++.||.+++|+....     +....+..|...+.+++|++++.    +|++|+.|+.+++|++....      ..
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~~v~~~~~sp~g~----~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCTWVMACAYAPSGC----AIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCCCEEEECTTSS----EEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CcceEEecCCCCEEEEEECCCCC----EEEEeeCCCCEEEEEEeccccccccccc
Confidence            46889999999999998765     44556667888899999988766    89999999999999986432      12


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      ..+..        |...+.++.+.+...        .+++++.|+++++|+++...        .+..+. .|...|.++
T Consensus       148 ~~~~~--------h~~~v~~~~~~~~~~--------~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~  202 (354)
T 2pbi_B          148 KSVAM--------HTNYLSACSFTNSDM--------QILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL  202 (354)
T ss_dssp             EEEEE--------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred             eeeec--------cCCcEEEEEEeCCCC--------EEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence            22333        456777887776655        89999999999999986433        455554 367789999


Q ss_pred             EecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          169 KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       169 ~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +++|  ++++|++|+.|+.|++||+++++.+..+..|.         ..|.+++|  +|++.+|++++.|++|++||++.
T Consensus       203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRY--YPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEE--eCCCCEEEEEeCCCeEEEEECCC
Confidence            9987  56899999999999999999999888887654         66999999  89999999999999999999998


Q ss_pred             CCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       247 ~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      .+. +..+..+  ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| .+.|++++|+|++++|++++.|+.
T Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          272 DRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             TEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CcE-EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence            653 5555433  346899999999999999999999999999999999999998 899999999999999999999999


Q ss_pred             EEEEE
Q 019405          325 LRFWD  329 (341)
Q Consensus       325 v~iwd  329 (341)
                      |++|+
T Consensus       350 v~vW~  354 (354)
T 2pbi_B          350 LRVWA  354 (354)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-40  Score=302.47  Aligned_cols=298  Identities=13%  Similarity=0.143  Sum_probs=236.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      .++++++.||.+++|+....     +....+.+|...|.+++|++++.    +|++|+.|++|+|||+.+++.+..+...
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v~fspdg~----~las~s~D~~i~lwd~~~g~~~~~~~~~  231 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRYNPDGS----LFASTGGDGTIVLYNGVDGTKTGVFEDD  231 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             eEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEEEECCCCC----EEEEEECCCcEEEEECCCCcEeeeeccc
Confidence            46899999999999997654     56678899999999999998766    8999999999999999988877665320


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc------------------------ccccC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS  150 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~------------------------~~~~~  150 (341)
                       ......|.+.+.++.|.+...        .|++++.|+++++|++.....                        .+++.
T Consensus       232 -~~~~~~h~~~V~~v~~spdg~--------~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          232 -SLKNVAHSGSVFGLTWSPDGT--------KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             -TSSSCSSSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             -cccccccCCCEEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence             001113668898998877665        899999999999999864321                        23446


Q ss_pred             CceEEEEEee----------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC-CCCC-------------
Q 019405          151 CSTVKSWNVC----------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP-PPKN-------------  206 (341)
Q Consensus       151 ~~~v~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~-------------  206 (341)
                      ++.+++|+..          |...|.+++|+|++++|++++.|++|++||+.+++....+.. |...             
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence            6778888743          456799999999999999999999999999988765443210 1000             


Q ss_pred             -----------------------------------------------------------ccCccCCeeeeEEEEEecCCC
Q 019405          207 -----------------------------------------------------------SLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       207 -----------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~  227 (341)
                                                                                 .....+...+.+++|  +|++
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~--spdg  460 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL--SNDK  460 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE--CTTS
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE--eCCC
Confidence                                                                       000012244678999  8999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCce-eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeE--EeccccCc
Q 019405          228 RKFVAGTNDHQVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGS  303 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~--~~~~~~~~  303 (341)
                      ++|++|+.|++|++||+...... +.. ..|...|++++|+|++++|++++.|+.|++||+.+ ++++..  +..| ...
T Consensus       461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~  538 (611)
T 1nr0_A          461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAK  538 (611)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSC
T ss_pred             CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccc
Confidence            99999999999999999875421 233 67999999999999999999999999999999987 666554  2336 899


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      |++++|+|++++|++++.|++|++||+++++
T Consensus       539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             eeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            9999999999999999999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-41  Score=286.08  Aligned_cols=254  Identities=14%  Similarity=0.123  Sum_probs=200.3

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ...+|...|.+++|++++.     +++++.||+|+|||+.+++........    ...|.+.+.++.+.+...       
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-----~l~~s~dg~v~lWd~~~~~~~~~~~~~----~~~h~~~V~~v~~spdg~-------  152 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-----ILVASDSGAVELWEILEKESLLVNKFA----KYEHDDIVKTLSVFSDGT-------  152 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-----EEEEETTSCEEEC--------CCCCEE----ECCCSSCEEEEEECSSSS-------
T ss_pred             ccCCCCCCEEEEEEcCCCC-----EEEEECCCEEEEeeccccceeEEEeec----cCCCCCCEEEEEECCCCC-------
Confidence            3446888899999998765     777888999999999887655433210    013568899998877666       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                       .|++++.|+.+++|++....        .+..+. .|...|.+++|++++. ++++++.|+.|++||+++++....+..
T Consensus       153 -~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~  222 (357)
T 4g56_B          153 -QAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF  222 (357)
T ss_dssp             -EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred             -EEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence             89999999999999986433        444444 3678899999999874 789999999999999998887765544


Q ss_pred             CCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCC
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSG  280 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg  280 (341)
                      ..       +...+.+++|  +|+ +.+|++|+.|+.|++||+++++. +..+..|...|++++|+|++ ++|++|+.|+
T Consensus       223 ~~-------~~~~v~~v~~--sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          223 CA-------SDTIPTSVTW--HPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             TT-------CCSCEEEEEE--CTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             cc-------ccccccchhh--hhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence            32       2356899999  665 56889999999999999998764 88899999999999999987 6799999999


Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCCCce
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      .|+|||+++++++..+ +| .+.|++++|+| ++.+|++++.||+|++||+.+...
T Consensus       293 ~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          293 TVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             CEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            9999999999887655 66 89999999998 789999999999999999976433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.2e-40  Score=276.30  Aligned_cols=284  Identities=14%  Similarity=0.115  Sum_probs=217.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~   92 (341)
                      -.+++++.||.|++|++...  ..........+|...|.+++|++++.    +|++|+.|++|+||+..++.  .+..+.
T Consensus        29 ~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~----~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGN----YLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSS----EEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCC----EEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            35778899999999999875  10011112357999999999988766    89999999999999987664  344444


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      .        |...+.++.+.+...        .|++++.|+.+++|++.....     ...+..+. .|...|.+++|+|
T Consensus       103 ~--------h~~~v~~v~~sp~~~--------~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p  160 (345)
T 3fm0_A          103 G--------HENEVKSVAWAPSGN--------LLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHP  160 (345)
T ss_dssp             C--------CSSCEEEEEECTTSS--------EEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECS
T ss_pred             C--------CCCCceEEEEeCCCC--------EEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECC
Confidence            4        557888888877655        999999999999999864321     11233333 4667899999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC--
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--  248 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--  248 (341)
                      ++++|++++.|+.|++||.++++.  ...+..|.         ..|.+++|  +|++++|++++.|++|++||.....  
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~--sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEE--CCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            999999999999999999987653  34555543         66999999  8999999999999999999974321  


Q ss_pred             ------------ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--------EE-eEEeccccCceeE
Q 019405          249 ------------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------LL-GCFIGKCSGSIRS  306 (341)
Q Consensus       249 ------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------~~-~~~~~~~~~~i~~  306 (341)
                                  ..+..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.        .. ....+| ...|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  308 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNC  308 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeE
Confidence                        11233333 78899999999999999999999999999987542        11 222456 889999


Q ss_pred             EEecCCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 019405          307 IARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       307 ~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++|+|++. +|++++.||.|++|++.+++.+..
T Consensus       309 v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          309 VAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             eEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            99999985 999999999999999999887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-39  Score=272.41  Aligned_cols=262  Identities=14%  Similarity=0.137  Sum_probs=221.0

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      +...++.+|...|.+++|++++.    +|++|+.||+|+|||..+++.+..+..        +...+.++.+.+...   
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~----~l~s~s~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~---  110 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSR----LLLSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGN---  110 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEEC--------SSSCEEEEEECTTSS---
T ss_pred             hhheeecCCCCceEEEEECCCCC----EEEEEeCCCcEEEEECCCCCcceEeec--------CCccEEEEEECCCCC---
Confidence            34557889999999999987665    899999999999999999888877766        346677777766555   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.|+.+++|++.....    .....+.+ ..|...|.++.|++++. +++++.|+.|++||+++++.+..
T Consensus       111 -----~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          111 -----YVACGGLDNICSIYNLKTREG----NVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             -----EEEEEETTCEEEEEETTTCSB----SCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred             -----EEEEEeCCCeEEEEECccCCC----cceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence                 899999999999999854321    00122222 34678899999998765 88999999999999999999888


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      +..|.         ..|.+++|  +|++++|++++.|+.|++||++++.. +..+.+|...|.+++|+|++.+|++|+.|
T Consensus       180 ~~~h~---------~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCC---------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            87654         56999999  88999999999999999999998764 88899999999999999999999999999


Q ss_pred             CCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|++||+++++.+..+..+ +...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence            99999999999888777532 1347999999999999999999999999999998887665

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.2e-39  Score=272.59  Aligned_cols=277  Identities=12%  Similarity=0.090  Sum_probs=220.9

Q ss_pred             CceeeeecCCCCeEEEEEecCcc-C-ccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHG-G-VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      .-.+++++.||.|++|++..... + .......+.+|...|.+++|++++.    +|++|+.|++|++||+.+++.+..+
T Consensus        39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~----~l~s~s~D~~v~lwd~~~~~~~~~~  114 (343)
T 2xzm_R           39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC----FAISSSWDKTLRLWDLRTGTTYKRF  114 (343)
T ss_dssp             CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT----EEEEEETTSEEEEEETTSSCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCcEEEEE
Confidence            34688999999999999986421 1 1134557888999999999987665    8999999999999999999888887


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSK  169 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~  169 (341)
                      ..        |...+.++.+.+...        .+++++.|+.+++|++....         .....  ..+...|.+++
T Consensus       115 ~~--------h~~~v~~v~~sp~~~--------~l~s~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R          115 VG--------HQSEVYSVAFSPDNR--------QILSAGAEREIKLWNILGEC---------KFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EC--------CCSCEEEEEECSSTT--------EEEEEETTSCEEEEESSSCE---------EEECCTTTSCSSCEEEEE
T ss_pred             cC--------CCCcEEEEEECCCCC--------EEEEEcCCCEEEEEeccCCc---------eeeeecccCCCceeeeee
Confidence            76        457788888877666        89999999999999985221         11111  13566799999


Q ss_pred             ecCCC----------CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeE
Q 019405          170 VDISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       170 ~~~~~----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  239 (341)
                      |+|++          .++++++.|+.|++||. +.+....+..|.         ..|.+++|  +|++++|++++.|+.|
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~--s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSI--SPNGKYIATGGKDKKL  237 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTCEE
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEE--CCCCCEEEEEcCCCeE
Confidence            99986          78999999999999994 455555555543         66999999  8999999999999999


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe--EEe-----------ccccCceeE
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRS  306 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~~i~~  306 (341)
                      ++||+.....+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.           +| ...|.+
T Consensus       238 ~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~  314 (343)
T 2xzm_R          238 LIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTS  314 (343)
T ss_dssp             EEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEE
T ss_pred             EEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEE
Confidence            9999965444455443 55679999999999877655 57889999998776543  333           44 778999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ++|+|++++|++|+.||.|++|++++++
T Consensus       315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          315 LAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEECCCCCeEEEecCCceEEEEEEEccC
Confidence            9999999999999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-39  Score=278.70  Aligned_cols=273  Identities=17%  Similarity=0.197  Sum_probs=217.7

Q ss_pred             cCCCCeEEEEEecCccCccceeeeccCCC------------------CCceeEEEeccCCCCCceEEEEccCCeEEEeeC
Q 019405           21 DSLGLIKVIEARGEHGGVPKVVERWGDPH------------------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (341)
Q Consensus        21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~------------------~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~   82 (341)
                      +.++.+++|++.+.     +.+..+..+.                  ..+.+++|++++.    +|++|+.|++|+|||+
T Consensus        82 g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~----~l~s~~~d~~i~iwd~  152 (393)
T 1erj_A           82 GCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIRIWDI  152 (393)
T ss_dssp             ECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEECTTSS----EEEEEETTSCEEEEET
T ss_pred             EcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEECCCCC----EEEEEcCCCeEEEEEC
Confidence            34566788887664     3443443322                  2377888877665    8999999999999999


Q ss_pred             CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (341)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~  162 (341)
                      .+++.+..+..        |...+.++.+.+...        .+++++.|+.+++|++....        .+..+  .+.
T Consensus       153 ~~~~~~~~~~~--------h~~~v~~~~~~p~~~--------~l~s~s~d~~v~iwd~~~~~--------~~~~~--~~~  206 (393)
T 1erj_A          153 ENRKIVMILQG--------HEQDIYSLDYFPSGD--------KLVSGSGDRTVRIWDLRTGQ--------CSLTL--SIE  206 (393)
T ss_dssp             TTTEEEEEECC--------CSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTE--------EEEEE--ECS
T ss_pred             CCCcEEEEEcc--------CCCCEEEEEEcCCCC--------EEEEecCCCcEEEEECCCCe--------eEEEE--EcC
Confidence            99888777766        457788888877666        89999999999999986432        22232  345


Q ss_pred             CceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ..+.+++++| +++++++++.|+.|++||+++++.+..+.....  ....|...|.+++|  +|++.+|++++.|+.|++
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~--~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVF--TRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEETTSEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--CCCCCCCCEEEEEE--CCCCCEEEEEeCCCEEEE
Confidence            6899999999 899999999999999999999887776643211  11225577999999  899999999999999999


Q ss_pred             EEcCCCC-----------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          242 YDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       242 wd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ||++...           .....+.+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+| .+.|.+++|+
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~  361 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVA  361 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCEEEEEec
Confidence            9997632           124567789999999999999999999999999999999999999999998 8999999988


Q ss_pred             C------CCCEEEEEeCCCcEEEEEcCCC
Q 019405          311 P------TLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       311 ~------~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      +      ++++|++++.||.|++|+++..
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            6      6789999999999999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.6e-39  Score=272.03  Aligned_cols=266  Identities=11%  Similarity=0.117  Sum_probs=223.3

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      ....+.+|...|.+++|++++.    +|++|+.||+|+|||..+++....+..+        ...+.++.+.+...    
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--------~~~v~~~~~sp~g~----  119 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMP--------CTWVMACAYAPSGC----  119 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECS--------SSCCCEEEECTTSS----
T ss_pred             EEEEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecC--------CCCEEEEEECCCCC----
Confidence            4557889999999999988765    8999999999999999888877776653        35677777766655    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                          .+++++.|+.+.+|++.......  ......... .|...|.+++|+|++..|++++.|++|++||+++++.+..+
T Consensus       120 ----~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          120 ----AIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             ----EEEEESTTSEEEEEECCCCTTCC--SGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----EEEEeeCCCCEEEEEEecccccc--ccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence                99999999999999986543211  111223333 46788999999999999999999999999999999998888


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      ..|.         ..|.+++|.|++++++|++++.|+.|++||+++++. +..+..|...|.+++|+|++.+|++|+.|+
T Consensus       193 ~~h~---------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  262 (354)
T 2pbi_B          193 HGHG---------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSDDA  262 (354)
T ss_dssp             ECCS---------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCC---------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence            7754         558999995555678999999999999999998764 888899999999999999999999999999


Q ss_pred             CEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|++||+++++.+..+..+ +...+.+++|+|++++|++++.|+.|++||+.+++++..+
T Consensus       263 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            9999999999887776543 1347899999999999999999999999999999887665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.1e-39  Score=268.41  Aligned_cols=271  Identities=15%  Similarity=0.152  Sum_probs=228.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.+++|++.+.     +....+.+|...+..++|++++.    +|++++.|+.|++||+++++.+..+.. 
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~d~~i~vwd~~~~~~~~~~~~-  105 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSN----LLVSASDDKTLKIWDVSSGKCLKTLKG-  105 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceEEEEEcCCCC----EEEEECCCCEEEEEECCCCcEEEEEcC-
Confidence            35788899999999998765     56667888999999999988665    899999999999999999988888776 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+.++.+.+...        .+++++.|+.+++|++....        .+..+. .+...|.+++|+|++
T Consensus       106 -------~~~~v~~~~~~~~~~--------~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~  161 (312)
T 4ery_A          106 -------HSNYVFCCNFNPQSN--------LIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG  161 (312)
T ss_dssp             -------CSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred             -------CCCCEEEEEEcCCCC--------EEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence                   446788888776655        89999999999999986433        344443 356789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +++++++.|+.|++||+++++.+..+....        ...+..++|  +|++++|++++.|+.|++||+++++. +..+
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~  230 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGKC-LKTY  230 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEE-EEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcE-EEEE
Confidence            999999999999999999988777664332        245888999  89999999999999999999998664 7778


Q ss_pred             EecCCCeEE--EEE-cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEE
Q 019405          255 DFRETPIKA--VAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWD  329 (341)
Q Consensus       255 ~~~~~~v~~--~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd  329 (341)
                      ..|......  ..+ .+++.+|++|+.||.|++||+++++.+..+.+| ...|.+++|+|++++|++++  .|+.|++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            777654332  234 467889999999999999999999999999998 89999999999999999987  699999998


Q ss_pred             cC
Q 019405          330 IK  331 (341)
Q Consensus       330 ~~  331 (341)
                      .+
T Consensus       310 ~d  311 (312)
T 4ery_A          310 SD  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.5e-39  Score=292.40  Aligned_cols=267  Identities=12%  Similarity=0.094  Sum_probs=217.8

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch--heeeccCCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQ  100 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~  100 (341)
                      ++.+++|++.+.     +....+.+|...|++++|++++.    +||+|+.|++|+|||+.+++..  ..+..       
T Consensus        38 ~~~v~l~~~~~~-----~~~~~~~~h~~~v~~~~~spdg~----~lasg~~d~~v~lWd~~~~~~~~~~~~~~-------  101 (611)
T 1nr0_A           38 GTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPV-------  101 (611)
T ss_dssp             TTEEEEEETTCS-----SCCEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEEC-------
T ss_pred             CCEEEEecCCCc-----ccCeEecCCCCceEEEEECCCCc----EEEEEeCCCCEEEeECCCCcceeeEeecc-------
Confidence            456788887654     45567889999999999998766    9999999999999999765432  33443       


Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC-
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK-  175 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-  175 (341)
                       +.+++.++.|.+...        .+++++.+    +.+.+|+...          .+..+ ..|...|.+++|+|++. 
T Consensus       102 -~~~~v~~v~fs~dg~--------~l~~~~~~~~~~~~v~~wd~~~----------~~~~l-~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A          102 -FSGPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGT----------SNGNL-TGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             -SSSCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCC----------BCBCC-CCCSSCEEEEEECSSSSC
T ss_pred             -cCCceEEEEECCCCC--------EEEEEECCCCceeEEEEeeCCC----------Cccee-cCCCCCceEEEECCCCCe
Confidence             457788888876655        77777654    4778887421          11111 24678899999999987 


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  255 (341)
                      .|++++.|++|++||..+++....+..|.         ..|.+++|  +|++++|++++.|++|++||+.+++. +..+.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~---------~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~-~~~~~  229 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTK-TGVFE  229 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEECB
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeecccc---------CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcE-eeeec
Confidence            59999999999999999888888877654         66999999  89999999999999999999988764 66663


Q ss_pred             -------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE--------------------------------
Q 019405          256 -------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF--------------------------------  296 (341)
Q Consensus       256 -------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------------------------------  296 (341)
                             +|...|.+++|+|++++|++++.|+.|++||+++++++..+                                
T Consensus       230 ~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~  309 (611)
T 1nr0_A          230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV  309 (611)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence                   69999999999999999999999999999999988765443                                


Q ss_pred             -----------eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          297 -----------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       297 -----------~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                                 .+| ...|++++|+|++++|++++.|+.|++||+.++++...
T Consensus       310 ~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          310 NPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             ETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             eCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence                       355 78999999999999999999999999999998876543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.6e-38  Score=266.49  Aligned_cols=277  Identities=11%  Similarity=0.111  Sum_probs=222.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++.............+.+|...|.+++|++++.    +|++++.|+.|++|+............ 
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~----~l~s~~~d~~i~~~~~~~~~~~~~~~~-  126 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ----FALSGSWDGTLRLWDLTTGTTTRRFVG-  126 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC----EEEEEcccccceEEeecccceeeeecC-
Confidence            357899999999999998764333345567888999999999987666    899999999999999987766555554 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+....+.+...        .+++++.|+.+.+|++....        ........+...+..+++++++
T Consensus       127 -------~~~~~~~~~~~~~~~--------~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          127 -------HTKDVLSVAFSSDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             -------CSSCEEEEEECTTSS--------CEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred             -------CCCceeEEEEeecCc--------cceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence                   224444444444444        89999999999999975332        2223333456788899998764


Q ss_pred             --CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          175 --KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       175 --~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                        .++++++.|+.|++||+++++....+..+.         ..|.+++|  +|++++|++++.|+.|++||+++.+. +.
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~--s~~~~~l~s~s~Dg~i~iwd~~~~~~-~~  251 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTV--SPDGSLCASGGKDGQAMLWDLNEGKH-LY  251 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTEE-EE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEE--CCCCCEEEEEeCCCeEEEEEeccCce-ee
Confidence              578899999999999999999888887654         56999999  89999999999999999999998654 66


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe---------ccccCceeEEEecCCCCEEEEEeCCC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      .+.. ...+.++.|+|++. +++++.|+.|++||++++..+..+.         +| ...|++++|+|++++|++|+.||
T Consensus       252 ~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          252 TLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred             eecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence            6664 46899999999875 4566679999999999988776654         34 78999999999999999999999


Q ss_pred             cEEEEEcCCCc
Q 019405          324 YLRFWDIKTRQ  334 (341)
Q Consensus       324 ~v~iwd~~~~~  334 (341)
                      .|+|||+++|+
T Consensus       329 ~v~iW~~~tGt  339 (340)
T 4aow_A          329 LVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEEEC--
T ss_pred             EEEEEeCCCcC
Confidence            99999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-39  Score=268.45  Aligned_cols=276  Identities=15%  Similarity=0.120  Sum_probs=207.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeec-cC-CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-------c
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERW-GD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-------D   86 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~   86 (341)
                      .+++++.||.|++|++...   ..+....+ .. |...|.+++|++++.    +|++|+.|++|+|||++..       +
T Consensus        26 ~las~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~sp~~~----~las~s~D~~v~iw~~~~~~~~~~~~~   98 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPHTS----LLAAGSFDSTVSIWAKEESADRTFEMD   98 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEECTTSS----EEEEEETTSCEEEEEC-------CCCE
T ss_pred             EEEEEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEECCCCC----EEEEEeCCCcEEEEEcccCcCccccce
Confidence            6889999999999998764   11333344 33 899999999988765    8999999999999998542       2


Q ss_pred             chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      .+..+..        |.+.+.++.+.+...        .|++++.|+.+++|++.....    ....+..+. .|...|.
T Consensus        99 ~~~~~~~--------h~~~V~~v~~sp~g~--------~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~v~  157 (330)
T 2hes_X           99 LLAIIEG--------HENEVKGVAWSNDGY--------YLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQDVK  157 (330)
T ss_dssp             EEEEEC------------CEEEEEECTTSC--------EEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSCEE
T ss_pred             eEEEEcC--------CCCcEEEEEECCCCC--------EEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCceE
Confidence            2333333        557888888877655        999999999999999843210    111233333 4678899


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCC--CCEEEEEeCCCeEEEE
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLY  242 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~~i~iw  242 (341)
                      +++|+|++++|++++.|++|++||..++  +.+..+..|.         ..|.+++|  +|+  +.+|++++.|++|++|
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDF--DKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCSSSSCEEEEEETTSCEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEe--cCCCCeeEEEEEeCCCeEEEE
Confidence            9999999999999999999999998766  4566666654         66999999  666  6789999999999999


Q ss_pred             EcCCCC-------ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--EEeEE-eccccC-ceeEEEec
Q 019405          243 DTSAQR-------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCF-IGKCSG-SIRSIARH  310 (341)
Q Consensus       243 d~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~-~~~~~~-~i~~~~~~  310 (341)
                      |++...       .....+.. |...|.+++|++++ +|++++.||.|++||..+++  ..... .+| .. .|++++|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~  304 (330)
T 2hes_X          227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWL  304 (330)
T ss_dssp             EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC
T ss_pred             EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEe
Confidence            987532       12333333 88899999999765 89999999999999998874  33333 456 55 89999999


Q ss_pred             C--CCCEEEEEeCCCcEEEEEcCC
Q 019405          311 P--TLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       311 ~--~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      |  ++++|++++.||.|++||+++
T Consensus       305 ~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          305 ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEEecCCCcEEEEEecc
Confidence            9  688999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.4e-39  Score=276.09  Aligned_cols=294  Identities=11%  Similarity=0.045  Sum_probs=235.6

Q ss_pred             ceeeeecCCCCeEEEEEecCcc-CccceeeeccCCCCCceeEEEeccCCCCC---ceEEEEccCCeEEEeeCCCCcc---
Q 019405           15 LRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDL---   87 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~---   87 (341)
                      -.+++++.||.|++|++..... ...+....+..|...+.+++|+++..+++   .+|++++.||.|++|++.+++.   
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~  106 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  106 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence            5688999999999999987620 11225667778999999999999832334   4899999999999999988776   


Q ss_pred             --hheeeccCCCCCCCC--CCceeeEeee----eccccccccccce-eEEEcccceeEEEEeee------cccccccCCc
Q 019405           88 --RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TKVSAESSCS  152 (341)
Q Consensus        88 --~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~g~~~i~~~~~------~~~~~~~~~~  152 (341)
                        ...+..+.     .+  ...+.++.+.    +...        . +++++.||.+.+|++..      ......   .
T Consensus       107 ~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~  170 (397)
T 1sq9_A          107 VIFEKLDLLD-----SDMKKHSFWALKWGASNDRLLS--------HRLVATDVKGTTYIWKFHPFADESNSLTLNW---S  170 (397)
T ss_dssp             EEEEEECCSC-----TTGGGSCEEEEEEECCC----C--------EEEEEEETTSCEEEEEEESSSSHHHHTTTCC---C
T ss_pred             ccceeecccc-----cccCCCcEEEEEEeeccCCCCc--------eEEEEEeCCCcEEEEeCCccccccccceeec---c
Confidence              55555431     01  3778888887    5555        7 99999999999999986      332110   0


Q ss_pred             eEEEEE------eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC---CCCCccCccCCeeeeEEEEEe
Q 019405          153 TVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       153 ~v~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~  223 (341)
                      ....+.      ..+...|.+++|+|++ ++++++.|+.|++||+++++.+..+..   +..      ....|.+++|  
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~------~~~~i~~i~~--  241 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN------NSNSIRSVKF--  241 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C------CCCCEEEEEE--
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc------cCCccceEEE--
Confidence            111222      2356789999999999 999999999999999999988888776   300      0256999999  


Q ss_pred             cCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEe-------------cCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          224 IDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       224 ~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                      +|++.+|++++.|   +.|++||+++++. +..+..             |...|.+++|+|++++|++++.||.|++||+
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            8899999999999   9999999998764 888888             9999999999999999999999999999999


Q ss_pred             CCCeEEeEEe------cc--------------ccCceeEEEecCCC----------CEEEEEeCCCcEEEEEcCCCc
Q 019405          288 RTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       288 ~~~~~~~~~~------~~--------------~~~~i~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ++++++..+.      .|              |...|++++|+|++          ++|++++.||.|++||+++|+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            9999999998      54              27899999999998          799999999999999998874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.2e-39  Score=275.55  Aligned_cols=273  Identities=15%  Similarity=0.123  Sum_probs=221.0

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      .....+.+|...|++++|++++.    +|++|+.||+|+|||+.+++....+..|        ...+.++.+.+...   
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h--------~~~v~~~~~s~~g~---  121 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLH--------CPWVMECAFAPNGQ---  121 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECC--------CTTCCCCEECTTSS---
T ss_pred             EEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecC--------CCCEEEEEECCCCC---
Confidence            45667899999999999998765    8999999999999999999888888764        45677777766555   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                           .+++++.|+.+++|++.......+ .....+.+ ..|.+.+.++.|.|+ +..|++|+.|++|++||+++++.+.
T Consensus       122 -----~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          122 -----SVACGGLDSACSIFNLSSQADRDG-NMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             -----EEEECCSSSCCEEEECCCCSSCCC-SSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred             -----EEEEeeCCCcEEEEECCCCccccC-Cccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence                 999999999999999865321110 00011112 245678889999986 4579999999999999999998877


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      .+....    ...|...|.+++|. ++++++|++|+.|++|++||++....++..+.+|...|.+++|+|++++|++|+.
T Consensus       195 ~~~~~~----~~~h~~~v~~~~~~-~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  269 (380)
T 3iz6_a          195 IFGSEF----PSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD  269 (380)
T ss_dssp             EECCCS----SSSCCSCEEEEEEC-SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred             Eeeccc----CCCCccCeEEEEee-cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence            663221    11245679999994 3488999999999999999998655568889999999999999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccc------cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+.|++||+++++.+..+..+.      ...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            9999999999999988876541      124899999999999999999999999999988877654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.9e-38  Score=260.66  Aligned_cols=258  Identities=16%  Similarity=0.222  Sum_probs=218.2

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      .+..++.+|...|.+++|++++.    +|++|+.||.|++|+..+++....+..        +...+.++.+.+...   
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~----~l~s~~~dg~i~iw~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~---   78 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGE----WLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDSN---   78 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTSS---
T ss_pred             eeEEEEcccCCcEEEEEECCCCC----EEEEeeCCCeEEEEeCCCcccchhhcc--------CCCceEEEEEcCCCC---
Confidence            45567889999999999987665    899999999999999998888777765        457788888877655   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.|+.+++|++....        .+..+. .+...|.+++|+|+++++++++.|+.|++||+++++.+..
T Consensus        79 -----~l~s~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           79 -----LLVSASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             -----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             -----EEEEECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence                 99999999999999986433        444444 3677899999999999999999999999999999988888


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      +..+.         ..|.+++|  +|++++|++++.|+.|++||+++++. +..+ ..+..++..++|+|++++|++++.
T Consensus       145 ~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          145 LPAHS---------DPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             ecCCC---------CcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            77654         56999999  89999999999999999999998764 4444 346678999999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeE--EEe-cCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRS--IAR-HPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+.|++||+++++.+..+.+| ...+..  ..+ .+++.+|++++.||.|++||+++++++.++
T Consensus       213 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             TTEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence            999999999999999999887 443322  233 467889999999999999999999888765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=265.97  Aligned_cols=259  Identities=16%  Similarity=0.156  Sum_probs=197.5

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC---CCCCCCCCCceeeEeeeecccccccccc
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG---DSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      .++..+.+++|++|+.    +|++++ |+++++||............+.   ......++..+.++.|.+. +       
T Consensus        28 ~~~~~v~~~~fs~dG~----~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~-------   94 (344)
T 4gqb_B           28 CMERQLEAARYRSDGA----LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-R-------   94 (344)
T ss_dssp             SCCSEEEEEEECTTSC----EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-T-------
T ss_pred             cccCCEEEEEECCCCC----EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-C-------
Confidence            3566788999998877    666666 8888888742110000000000   0000012356777777553 4       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                       .+++++.||.+++|+++..+..     ...+.....|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|
T Consensus        95 -~l~~~s~dg~v~lWd~~~~~~~-----~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h  168 (344)
T 4gqb_B           95 -GILVASDSGAVELWELDENETL-----IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH  168 (344)
T ss_dssp             -EEEEEETTSEEEEEEECTTSSC-----EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             -eEEEEECCCEEEEEeccCCCce-----eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc
Confidence             7899999999999999755421     1223333457889999999999999999999999999999999999988876


Q ss_pred             CCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCceeEEE--EecCCCeEEEEEcCC-CceEEEEeCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPD-SFNIYIGNGS  279 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~g~~d  279 (341)
                      .         ..|.+++|  ++++ .+|++++.|++|++||+++++. ...+  ..+...+.+++|+|+ +++|++|+.|
T Consensus       169 ~---------~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          169 A---------AQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             S---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             C---------CceEEEEe--cCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            4         66999999  7776 5789999999999999998764 5544  345667999999995 5788999999


Q ss_pred             CCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEEEEcCCCceee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      |.|++||+++++++..+.+| ...|++++|+|++ ++|++++.|++|+|||+++++++.
T Consensus       237 g~v~~wd~~~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             SEEEEEESCC--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             CcEEEEECCCCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            99999999999999999998 8999999999998 589999999999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-38  Score=270.20  Aligned_cols=278  Identities=15%  Similarity=0.147  Sum_probs=203.1

Q ss_pred             eeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc------CCeEEEeeCCCCcchhee
Q 019405           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        18 ~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~   91 (341)
                      +..+.+...+.|++...         ....|+..|.+++||+|+.    +|++|+.      |+.|++|+..++.....+
T Consensus        20 ~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~----~las~s~d~~~~wd~~v~~~~~~~~~~~~~~   86 (357)
T 4g56_B           20 FQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGA----LLLAASSLSSRTWGGSIWVFKDPEGAPNESL   86 (357)
T ss_dssp             -----------------------------CCCSEEEEEEECSSSC----EEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred             EecCCCccccccCCCCC---------CcccccCCEEEEEECCCCC----EEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence            34444455566665433         1235889999999998877    8999987      788999998877654333


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ...    ...+...+.+++|.+. +        .+++++.||.+++|++.......     ....-...|...|.+++|+
T Consensus        87 ~~~----~~~~~~~V~~~~~s~d-~--------~~l~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~V~~v~~s  148 (357)
T 4g56_B           87 CTA----GVQTEAGVTDVAWVSE-K--------GILVASDSGAVELWEILEKESLL-----VNKFAKYEHDDIVKTLSVF  148 (357)
T ss_dssp             CSE----EEECSSCEEEEEEETT-T--------EEEEEETTSCEEEC--------C-----CCCEEECCCSSCEEEEEEC
T ss_pred             ecc----cCCCCCCEEEEEEcCC-C--------CEEEEECCCEEEEeeccccceeE-----EEeeccCCCCCCEEEEEEC
Confidence            210    0024567888887654 3        67788899999999987554211     1112223467899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      |++++|++++.|+.|++||+++++.+..+..+.         ..|.+++|  ++++ .++++++.|++|++||+++++. 
T Consensus       149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~~-  216 (357)
T 4g56_B          149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPKP-  216 (357)
T ss_dssp             SSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSSC-
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--ccCCCceeeeeccCCceEEEECCCCce-
Confidence            999999999999999999999999998887754         56999999  7766 4789999999999999998664 


Q ss_pred             eEEE--EecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEE
Q 019405          251 VMSF--DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLR  326 (341)
Q Consensus       251 ~~~~--~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~  326 (341)
                      +..+  ..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++++.|++|+
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            3333  3466789999999975 68889999999999999999999999998 8999999999987 5799999999999


Q ss_pred             EEEcCCCceeeee
Q 019405          327 FWDIKTRQLLSAV  339 (341)
Q Consensus       327 iwd~~~~~~~~~~  339 (341)
                      |||+++++++..+
T Consensus       296 iwd~~~~~~~~~~  308 (357)
T 4g56_B          296 VLDADFSEVFRDL  308 (357)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EEECCCCcEeEEC
Confidence            9999999887653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-37  Score=279.66  Aligned_cols=262  Identities=16%  Similarity=0.235  Sum_probs=222.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.+++|+....      .+..+..|...+.+++|++++.    +|++++.|+.|++||. +++.+..+.. 
T Consensus       316 ~~l~t~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~~~~s~~g~----~l~~~~~dg~v~~~~~-~~~~~~~~~~-  383 (577)
T 2ymu_A          316 QTIASASDDKTVKLWNRNGQ------HLQTLTGHSSSVWGVAFSPDGQ----TIASASDDKTVKLWNR-NGQLLQTLTG-  383 (577)
T ss_dssp             SEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEET-TCCEEEEEEC-
T ss_pred             CEEEEEeCCCeEEEEeCCCC------eeEEEeCCCCCEEEEEECCCCC----EEEEEeCCCEEEEEcC-CCCEEEEecC-
Confidence            35778889999999996543      3456778999999999987766    8999999999999996 5666666665 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+.++.+.+...        .+++++.|+.+++|+...         ..+.... .+...|.+++|+|++
T Consensus       384 -------~~~~v~~~~~s~dg~--------~l~~~~~d~~v~~~~~~~---------~~~~~~~-~~~~~v~~~~~s~d~  438 (577)
T 2ymu_A          384 -------HSSSVRGVAFSPDGQ--------TIASASDDKTVKLWNRNG---------QLLQTLT-GHSSSVWGVAFSPDD  438 (577)
T ss_dssp             -------CSSCEEEEEECTTSS--------CEEEEETTSEEEEECTTC---------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred             -------CCCCeEEEEECCCCC--------EEEEEeCCCEEEEEeCCC---------CEEEEec-CCCCCeEEEEECCCC
Confidence                   457788888766555        899999999999998521         2344443 467889999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      ++|++++.|+.|++||. +++.+..+..+.         ..|.+++|  +|++++|++++.|+.|++||.. ++ .+..+
T Consensus       439 ~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~---------~~v~~~~~--spd~~~las~~~d~~i~iw~~~-~~-~~~~~  504 (577)
T 2ymu_A          439 QTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVRGVAF--SPDGQTIASASDDKTVKLWNRN-GQ-LLQTL  504 (577)
T ss_dssp             SEEEEEETTSEEEEEET-TSCEEEEEECCS---------SCEEEEEE--CTTSCEEEEEETTSEEEEEETT-SC-EEEEE
T ss_pred             CEEEEEcCCCEEEEEEC-CCCEEEEEcCCC---------CCEEEEEE--cCCCCEEEEEeCCCEEEEEcCC-CC-EEEEE
Confidence            99999999999999996 556666666543         56999999  8999999999999999999964 34 48889


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      .+|...|++++|+|++++|++++.|+.|++||. +++++..+.+| .+.|++++|+||+++|++++.|+.|++||
T Consensus       505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999999999996 68899999998 99999999999999999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-37  Score=257.96  Aligned_cols=250  Identities=12%  Similarity=0.088  Sum_probs=199.4

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeecc-ccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESS  120 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  120 (341)
                      .+.+|...|.+++|++++.    +|++|+.|++|+|||+.++  +.+.++..        |.+++.++.|.++. +.   
T Consensus         4 ~~~~h~~~V~~~~~s~~g~----~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~---   68 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGK----RMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGT---   68 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSS----EEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCS---
T ss_pred             eccCCcCceEEEEECCCCC----EEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCC---
Confidence            5678999999999987766    8999999999999999743  45556655        55788888886542 22   


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce--
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK--  196 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~--  196 (341)
                          .|++++.|+++++|+++....      ..+..+. .|...|.+++|+|+  +.+|++++.|+.|++||++++..  
T Consensus        69 ----~l~s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~  137 (297)
T 2pm7_B           69 ----ILASCSYDGKVMIWKEENGRW------SQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS  137 (297)
T ss_dssp             ----EEEEEETTTEEEEEEBSSSCB------CCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC
T ss_pred             ----EEEEEcCCCEEEEEEcCCCce------EEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee
Confidence                899999999999999864321      1222322 36678999999997  88999999999999999987532  


Q ss_pred             eeecCCCCCCccCccCCeeeeEEEEEecCC-------------CCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCC
Q 019405          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-------------HRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETP  260 (341)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~  260 (341)
                      ...+..         |...|.+++|  +|+             +++|++++.|++|++||+++.+.   ....+.+|...
T Consensus       138 ~~~~~~---------h~~~v~~~~~--~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~  206 (297)
T 2pm7_B          138 PIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (297)
T ss_dssp             CEEEEC---------CSSCEEEEEE--CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             eeeeec---------ccCccceEee--cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc
Confidence            222333         3466999999  664             57999999999999999987552   35677889999


Q ss_pred             eEEEEEcCCC---ceEEEEeCCCCEEEEECCCCe---EEeEE--eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          261 IKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       261 v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~---~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      |.+++|+|++   .+|++++.|+.|++||+++..   ....+  ..| ...|.+++|+|++++|++++.|+.|++|+..
T Consensus       207 V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          207 VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999999984   899999999999999998642   12222  345 7899999999999999999999999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-37  Score=260.94  Aligned_cols=283  Identities=12%  Similarity=0.125  Sum_probs=235.5

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++.+.     +.+..+..|...+.+++|++++.    +|++++.||.|++||+.+++.+..+.. 
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~-  114 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIWSIDVDCFTK----YCVTGSADYSIKLWDVSNGQCVATWKS-  114 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence            35788889999999998876     66778888999999999987665    899999999999999999988777763 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEccc-----ceeEEEEeeeccccc---ccCCceEEEEEe-ecCCce
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVSA---ESSCSTVKSWNV-CASGTI  165 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~i~~~~~~~~~~---~~~~~~v~~~~~-~~~~~i  165 (341)
                              ...+.++.+.+...        .+++++.+     +.+.+|++.......   ......+..... .....+
T Consensus       115 --------~~~v~~~~~~~~~~--------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          115 --------PVPVKRVEFSPCGN--------YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             --------SSCEEEEEECTTSS--------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             --------CCCeEEEEEccCCC--------EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence                    26678888776655        88888888     999999998764321   001112222221 112389


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      .+++|+|+++++++++.||.|++||+++ .+....+..+.         ..|.+++|  +|++++|++++.|+.|++||+
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQF--SPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEE--CCCCCEEEEecCCceEEEEEC
Confidence            9999999999999999999999999998 67777666643         56999999  899999999999999999999


Q ss_pred             CCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--------------CEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ++++. +..+. +...+..++|+|+++++++++.++              .+++||..+++.+..+.+| ...|++++|+
T Consensus       248 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s  324 (369)
T 3zwl_B          248 STLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAIS  324 (369)
T ss_dssp             TTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred             CCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEEC
Confidence            98764 66665 778999999999999999999988              8999999999999999998 8999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          311 PTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       311 ~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      |++++|++++.||.|++|+++++....
T Consensus       325 ~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          325 PQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             TTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             CCCCEEEEEcCCCeEEEEECccccchh
Confidence            999999999999999999998765443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-37  Score=278.93  Aligned_cols=281  Identities=19%  Similarity=0.264  Sum_probs=235.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.+++|+...      +.+..+.+|...+..++|++++.    +|++++.|+.|++|+. +++.+..+.. 
T Consensus       234 ~~l~~~~~d~~i~~w~~~~------~~~~~~~~~~~~v~~v~~~~d~~----~l~~~~~d~~i~~w~~-~~~~~~~~~~-  301 (577)
T 2ymu_A          234 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVNGVAFRPDGQ----TIASASDDKTVKLWNR-NGQLLQTLTG-  301 (577)
T ss_dssp             SCEEEEETTSCEEEECTTS------CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEET-TSCEEEEECC-
T ss_pred             CEEEEEeCCCEEEEEeCCC------CEEEEEecCCCCEEEEEEcCCCC----EEEEEeCCCEEEEEeC-CCcEEEEEec-
Confidence            3467888899999998432      45667888999999999987665    8999999999999997 4566666554 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc----------------------ccccCCc
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----------------------SAESSCS  152 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~----------------------~~~~~~~  152 (341)
                             +...+.++.+.+...        .+++++.|+.+++|++.....                      +++..++
T Consensus       302 -------h~~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          302 -------HSSSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             -------CSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -------CCCCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence                   457788887766555        899999999999998643211                      2456788


Q ss_pred             eEEEEEee---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       153 ~v~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                      .+++|+..         +...|.+++|+|++++|++++.|+.|++||. +++.+..+..+.         ..|.+++|  
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~--  434 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAF--  434 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred             EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEE--
Confidence            89998753         3467899999999999999999999999995 566666666543         56999999  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      +|++++|++++.|+.|++||... + .+..+..|...|++++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~  510 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS  510 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred             CCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence            89999999999999999999754 4 47888999999999999999999999999999999995 68899999998 899


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |++++|+|++++|++++.|+.|++||. +++++.++
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~  545 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  545 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE
Confidence            999999999999999999999999996 57777765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-37  Score=266.09  Aligned_cols=276  Identities=16%  Similarity=0.181  Sum_probs=222.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccC-CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      ..+++++.||.|++|++...     +....+.. |...+.+++|++++.    +|++|+.||.|++||+.+++.+..+..
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~~~~~~v~~v~~s~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSG-----SVSALAETDESTYVASVKWSHDGS----FLSVGLGNGLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTC-----CEEEEEECCTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEECCCeEEEeeCCCC-----cEeEeeecCCCCCEEEEEECCCCC----EEEEECCCCeEEEEECcCCeEEEEecC
Confidence            45788999999999999875     33334433 788999999988665    899999999999999999988877765


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                              +...+.++.+  ...        .+++++.||.+.+|++....       ..+..+. .+...|.+++|+|+
T Consensus       175 --------~~~~v~~~~~--~~~--------~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~~  228 (401)
T 4aez_A          175 --------HQARVGCLSW--NRH--------VLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRSD  228 (401)
T ss_dssp             --------CSSCEEEEEE--ETT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred             --------CCCceEEEEE--CCC--------EEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcCC
Confidence                    4577888877  223        89999999999999986322       1344443 46789999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEe--CCCeEEEEEcCCCCce
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT--NDHQVRLYDTSAQRRP  250 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~--~d~~i~iwd~~~~~~~  250 (341)
                      +++|++++.|+.|++||+++++....+..+.         ..|.+++|  +|++ .++++++  .|+.|++||+++++. 
T Consensus       229 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~--~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-  296 (401)
T 4aez_A          229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAW--CPWQSNLLATGGGTMDKQIHFWNAATGAR-  296 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEE--CTTSTTEEEEECCTTTCEEEEEETTTCCE-
T ss_pred             CCEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEE--CCCCCCEEEEecCCCCCEEEEEECCCCCE-
Confidence            9999999999999999999988888776653         56999999  7755 5566654  799999999998764 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEE--EeCCCCEEEEECCCCeEEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      +..+. +...|.+++|+|++++|++  |+.||.|++||+.+++...  .+.+| ...|.+++|+|++++|++++.||.|+
T Consensus       297 ~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          297 VNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLK  374 (401)
T ss_dssp             EEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred             EEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            66665 6678999999999999998  5589999999999876544  46677 89999999999999999999999999


Q ss_pred             EEEcCCCceeeee
Q 019405          327 FWDIKTRQLLSAV  339 (341)
Q Consensus       327 iwd~~~~~~~~~~  339 (341)
                      +||+.+++.+.+.
T Consensus       375 iw~~~~~~~~~~~  387 (401)
T 4aez_A          375 FWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECCC-------
T ss_pred             EEECCCCcccccc
Confidence            9999999877653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.5e-38  Score=268.29  Aligned_cols=288  Identities=15%  Similarity=0.218  Sum_probs=227.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeecc--CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ..+++++.+|.|++|++...  +....+..+.  .|...+.+++|+++..+.+++|++|+.||.|++||+.+++.+..+.
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            34777777889999999875  2112222222  3678899999999988778899999999999999999998888777


Q ss_pred             ccCCCCCCCCCCceeeEeeee-ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEE
Q 019405           93 NAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSK  169 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~  169 (341)
                      .        +...+.++.+.+ ...        .+++++.||.+.+|++....        .+..+.  ..+...|.+++
T Consensus       113 ~--------~~~~i~~~~~~~~~~~--------~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A          113 G--------HGNAINELKFHPRDPN--------LLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             S--------CCSCEEEEEECSSCTT--------EEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEE
T ss_pred             C--------CCCcEEEEEECCCCCC--------EEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEE
Confidence            5        457888888877 444        89999999999999986433        444442  24678999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC-------------------CCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      |+|++++|++++.|+.|++||+++++....+...                   ........|...|.+++|  +  ++++
T Consensus       169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l  244 (366)
T 3k26_A          169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L--GDLI  244 (366)
T ss_dssp             ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E--TTEE
T ss_pred             ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c--CCEE
Confidence            9999999999999999999999987654333210                   000001115577999999  4  7799


Q ss_pred             EEEeCCCeEEEEEcCCCCc-------------eeEEEEecCCCeEEEEEcCC--CceEEEEeCCCCEEEEECCCCe----
Q 019405          231 VAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGK----  291 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~----  291 (341)
                      ++++.|+.|++||+++...             .+..+..|...|++++|+|+  +++|++|+.||.|++||+.+++    
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  324 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA  324 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred             EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence            9999999999999987532             36777889999999999999  9999999999999999999875    


Q ss_pred             EEeEEecc-ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          292 LLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       292 ~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ....+..| +...|++++|+|++++|++++.||.|++||+.+
T Consensus       325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            34466665 258999999999999999999999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-37  Score=284.91  Aligned_cols=276  Identities=11%  Similarity=0.100  Sum_probs=223.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.|++|++.............+.+|...|.+++|++++.    +|++|+.||+|+|||+.+++....+.. 
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~----~l~sgs~Dg~v~vwd~~~~~~~~~~~~-  470 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ----FALSGSWDGELRLWDLAAGVSTRRFVG-  470 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEEC-
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC----EEEEEeCCCcEEEEECCCCcceeEEeC-
Confidence            458899999999999998752221234457888999999999988766    899999999999999999988887776 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--eecCCceEEEEecC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDI  172 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~i~~~~~~~  172 (341)
                             |...+.++.+.+...        .+++++.|+++++|++....        ...+..  ..|...|.+++|+|
T Consensus       471 -------h~~~v~~~~~s~~~~--------~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~  527 (694)
T 3dm0_A          471 -------HTKDVLSVAFSLDNR--------QIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSP  527 (694)
T ss_dssp             -------CSSCEEEEEECTTSS--------CEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECS
T ss_pred             -------CCCCEEEEEEeCCCC--------EEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeC
Confidence                   457788888877665        89999999999999964221        111111  13556799999999


Q ss_pred             CC--CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          173 SE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       173 ~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      ++  ..+++++.|+.|++||+++++....+..|.         ..|.+++|  +|++++|++++.|+.|++||+++++. 
T Consensus       528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~sg~~Dg~i~iwd~~~~~~-  595 (694)
T 3dm0_A          528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAV--SPDGSLCASGGKDGVVLLWDLAEGKK-  595 (694)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSBCEEEETTTTEE-
T ss_pred             CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCce-
Confidence            86  689999999999999999998888877654         66999999  89999999999999999999998764 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc------------------CceeEEEecCC
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS------------------GSIRSIARHPT  312 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~~~~~  312 (341)
                      +..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+..                  ..+++++|+|+
T Consensus       596 ~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd  673 (694)
T 3dm0_A          596 LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD  673 (694)
T ss_dssp             EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred             EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence            55554 456899999999998877765 56699999999998877754311                  13788999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 019405          313 LPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +++|++|+.||.|++||+..
T Consensus       674 g~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          674 GSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             SSEEEEEETTSEEEEEEC--
T ss_pred             CCEEEEEcCCCeEEEEeccC
Confidence            99999999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.6e-37  Score=260.16  Aligned_cols=259  Identities=12%  Similarity=0.077  Sum_probs=208.2

Q ss_pred             ceeeeccCCCC-CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           40 KVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        40 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      +++.++.+|.. .+.+++|++++.    +||+|+.|++|+|||++++.........     ..|.+.+.++.+.+...  
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~----~las~~~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~g~--   74 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGT----LLASCGGDRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSPCGN--   74 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSS----CEEEEETTSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECTTSS--
T ss_pred             EEeeeecCCCCCcEEEEEECCCCC----EEEEEcCCCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECCCCC--
Confidence            45667878877 889999987766    8999999999999999876543222110     13567888888877655  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--  196 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--  196 (341)
                            .|++++.|+.+++|++.....      ..+..+. .|...|.+++|+|++++|++++.|+.|++||++++..  
T Consensus        75 ------~l~s~s~D~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           75 ------YLASASFDATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             ------EEEEEETTSCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             ------EEEEEECCCcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence                  999999999999999854321      1233333 4678899999999999999999999999999987643  


Q ss_pred             -eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEE
Q 019405          197 -IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIY  274 (341)
Q Consensus       197 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~  274 (341)
                       +..+..+         ...|.+++|  +|++.+|++++.|++|++||.+..+. ....+.+|...|++++|+|++++|+
T Consensus       142 ~~~~~~~h---------~~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          142 CVSVLNSH---------TQDVKHVVW--HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             EEEEECCC---------CSCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEecCc---------CCCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence             3344443         356999999  89999999999999999999987542 3567888999999999999999999


Q ss_pred             EEeCCCCEEEEECCC---------------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          275 IGNGSGDLASVDIRT---------------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       275 ~g~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      +|+.|+.|++||...               .+++..+.+.|...|++++|+|++..|++++.|+.|++|+...+
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            999999999999632               23455666645889999999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-37  Score=264.03  Aligned_cols=282  Identities=11%  Similarity=0.071  Sum_probs=227.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.+|.|++|++...   .++.+..+.+|...+.+++|++++.    +|++++.||.|++||+++++....+...
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPDSN----RIVTCGTDRNAYVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETTTT----EEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEeCCCC---cEEeeeeecCCCCcccEEEEeCCCC----EEEEEcCCCeEEEEECCCCeeeeeEEee
Confidence            34677889999999999875   1226678888999999999998665    8999999999999999887655444321


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                            .+...+.++.+.+...        .+++++.++.+.+|++.....     ..........+...|.+++|+|++
T Consensus        94 ------~~~~~v~~~~~~~~~~--------~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           94 ------RINRAARCVRWAPNEK--------KFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             ------CCSSCEEEEEECTTSS--------EEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred             ------cCCCceeEEEECCCCC--------EEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcCCC
Confidence                  3457788888876655        899999999999999975431     112333334457789999999999


Q ss_pred             CEEEEeeCCCeEEEEECC------------------CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405          175 KFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  236 (341)
                      +++++++.|+.|++||++                  .++.+..+..+         ...+.+++|  +|++++|++++.|
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~--~~~~~~l~~~~~d  223 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS---------CGWVHGVCF--SANGSRVAWVSHD  223 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC---------SSCEEEEEE--CSSSSEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC---------CCeEEEEEE--CCCCCEEEEEeCC
Confidence            999999999999999964                  45555555543         366999999  8899999999999


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC--CeE--E-------------------
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL--L-------------------  293 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~--~-------------------  293 (341)
                      +.|++||+++++ ++..+..|..+|.+++|+|++.+|++| .|+.|++|++.+  ++.  +                   
T Consensus       224 ~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (372)
T 1k8k_C          224 STVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER  301 (372)
T ss_dssp             TEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred             CEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence            999999999876 488899999999999999999988887 899999999987  431  1                   


Q ss_pred             -----------------eEEe-ccccCceeEEEec-CCC---CEEEEEeCCCcEEEEEcCCCcee
Q 019405          294 -----------------GCFI-GKCSGSIRSIARH-PTL---PIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       294 -----------------~~~~-~~~~~~i~~~~~~-~~~---~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                                       ..+. +| ...|++++|+ +++   .+|++++.||.|++||+++++.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          302 FQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             HHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             hhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence                             2333 66 8899999976 666   89999999999999999886543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8e-37  Score=255.19  Aligned_cols=255  Identities=13%  Similarity=0.163  Sum_probs=210.0

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----chheeeccCCCCCCCCCCceeeEeeeec
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (341)
                      .+..++.+|...|.+++|+++..   ++|++|+.|++|++|++....     .+..+..        |...+.++.+.+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~d   76 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTAD   76 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTT
T ss_pred             EEEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCC
Confidence            45567889999999999987542   379999999999999986432     2344444        4577888877666


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                      ..        .+++++.|+++++|++....        .+..+. .|...|.+++|+|++.++++++.|++|++||++ +
T Consensus        77 g~--------~l~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~  138 (319)
T 3frx_A           77 GA--------YALSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G  138 (319)
T ss_dssp             SS--------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred             CC--------EEEEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence            55        99999999999999986443        344444 467899999999999999999999999999996 4


Q ss_pred             ceeeecCCCCCCccCccCCeeeeEEEEEecC------CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC
Q 019405          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  268 (341)
                      +.+..+..+         ...|.++.|  .|      ++..+++++.|+.|++||+++.+. ...+.+|...|.+++|+|
T Consensus       139 ~~~~~~~~h---------~~~v~~~~~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          139 QCLATLLGH---------NDWVSQVRV--VPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASP  206 (319)
T ss_dssp             CEEEEECCC---------SSCEEEEEE--CCC------CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECT
T ss_pred             CeEEEEecc---------CCcEEEEEE--ccCCCCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcC
Confidence            455555554         366899999  55      345899999999999999998654 778889999999999999


Q ss_pred             CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++++|++|+.|+.|++||+.+++.+..+..+  ..|.+++|+|++.+|++++.+ .+++|++..+..+..
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~  273 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDD  273 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeec
Confidence            9999999999999999999999999988864  689999999999999988765 599999988766544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=255.70  Aligned_cols=261  Identities=11%  Similarity=0.077  Sum_probs=201.1

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (341)
                      +++..+.+|...|.+++|+++      +|++|+.|++|+|||+.++.  ....+..      ..|.+.+.++.+.+... 
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~------~~h~~~v~~v~~sp~~~-   71 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDE------TAHKKAIRSVAWRPHTS-   71 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECT------TCCCSCEEEEEECTTSS-
T ss_pred             ccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEec------CCccCCEEEEEECCCCC-
Confidence            456678899999999998854      69999999999999998653  2233311      12567888888877655 


Q ss_pred             ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC---
Q 019405          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---  194 (341)
Q Consensus       118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---  194 (341)
                             .|++++.|+.+++|++....... .....+..+. .|...|.+++|+|++++|++++.|++|++||++..   
T Consensus        72 -------~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           72 -------LLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             -------EEEEEETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             -------EEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence                   89999999999999985322100 0111233332 46788999999999999999999999999999532   


Q ss_pred             -ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEEEecCCCeEEEEEcCC--C
Q 019405          195 -EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--S  270 (341)
Q Consensus       195 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~--~  270 (341)
                       +.+..+..|         ...|.+++|  +|++.+|++++.|++|++||..... .++..+.+|...|.+++|+|+  +
T Consensus       143 ~~~~~~~~~h---------~~~v~~v~~--~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          143 YECISVLQEH---------SQDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             CEEEEEECCC---------SSCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             eEEEEEeccC---------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence             344455554         366999999  8899999999999999999988652 347788899999999999998  6


Q ss_pred             ceEEEEeCCCCEEEEECCCC--------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          271 FNIYIGNGSGDLASVDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       271 ~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ..|++|+.|+.|++||++.+        .+...+...|...|++++|++++ +|++++.||.|++||..+++
T Consensus       212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            78999999999999998754        44555655338899999999765 89999999999999998763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-36  Score=260.95  Aligned_cols=272  Identities=15%  Similarity=0.161  Sum_probs=218.1

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .+++.+-|+.|++|++.+.     ++..  .+.+|...|++++|++++.    +|++|+.||+|+|||+++++.+..+..
T Consensus       117 n~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~V~sv~fspdg~----~lasgs~Dg~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          117 NVLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             SEEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CEEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCcEEEEEECCCCC----EEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence            3566667899999998875     3333  4556888899999988766    999999999999999999998888776


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      |        ...+.++.+.  ..        .+++++.|+.+.+|+.....       ..+..+. .+...+..+.++|+
T Consensus       188 h--------~~~v~~~s~~--~~--------~l~sgs~d~~i~~~d~~~~~-------~~~~~~~-~h~~~~~~~~~~~~  241 (420)
T 4gga_A          188 H--------SARVGSLSWN--SY--------ILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPD  241 (420)
T ss_dssp             C--------SSCEEEEEEE--TT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTT
T ss_pred             C--------CCceEEEeeC--CC--------EEEEEeCCCceeEeeecccc-------eeeEEec-ccccceeeeeecCC
Confidence            4        4566666542  22        89999999999999975432       2344444 46788999999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCcee----eecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEE--EeCCCeEEEEEcCC
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKI----WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVA--GTNDHQVRLYDTSA  246 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~--~~~d~~i~iwd~~~  246 (341)
                      ++++++++.|+.+++|+..+++..    .....         +...|.+++|  .|. ..++++  |+.|++|++||+.+
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~---------~~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ---------HQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECC---------CSSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecc---------cCCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCc
Confidence            999999999999999999876532    22222         3466999999  554 455555  45799999999998


Q ss_pred             CCceeEEEEecCCCeEEEEEcCCCceEEEEe--CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       247 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      ++. +..+..| ..+.++.|+|++..+++++  .|+.|+|||+.+++++..+.+| .+.|++++|+|+|++|++++.|++
T Consensus       311 ~~~-~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          311 GAC-LSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             TEE-EEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ccc-ceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCe
Confidence            764 6666644 5789999999998888765  7899999999999999999998 899999999999999999999999


Q ss_pred             EEEEEcCCCcee
Q 019405          325 LRFWDIKTRQLL  336 (341)
Q Consensus       325 v~iwd~~~~~~~  336 (341)
                      |+|||+....+.
T Consensus       388 vriWdv~~~~~~  399 (420)
T 4gga_A          388 LRLWRCFELDPA  399 (420)
T ss_dssp             EEEECCSCSSCC
T ss_pred             EEEEECCCCCcc
Confidence            999999765543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-37  Score=264.39  Aligned_cols=281  Identities=13%  Similarity=0.102  Sum_probs=229.3

Q ss_pred             eeeeecCCCCeEEEEE----ecCcc-----CccceeeeccC------CCCCceeEEEeccCCCCCceEEEEccCCeEEEe
Q 019405           16 RALTFDSLGLIKVIEA----RGEHG-----GVPKVVERWGD------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~----~~~~~-----g~~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw   80 (341)
                      .+++++.||.+++|++    .....     ....+...+..      |...+.+++|++++.    +|++++.||.|++|
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~l~~~~~dg~i~i~  135 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN----SIVTGVENGELRLW  135 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS----EEEEEETTSCEEEE
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC----EEEEEeCCCeEEEE
Confidence            5788899999999999    54410     01111122222      577999999988665    89999999999999


Q ss_pred             eCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------------
Q 019405           81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------  145 (341)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---------------  145 (341)
                      | .+++.+..+..        +...+.++.+.+...        .+++++.++.+.+|++.....               
T Consensus       136 ~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          136 N-KTGALLNVLNF--------HRAPIVSVKWNKDGT--------HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             E-TTSCEEEEECC--------CCSCEEEEEECTTSS--------EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             e-CCCCeeeeccC--------CCccEEEEEECCCCC--------EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            9 56777666665        457788888877655        899999999999999754321               


Q ss_pred             ----------------------ccccCCceEEEEEeec----------CCceEEEEecCCCCEEEEeeCCCeEEEEECCC
Q 019405          146 ----------------------SAESSCSTVKSWNVCA----------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK  193 (341)
Q Consensus       146 ----------------------~~~~~~~~v~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~  193 (341)
                                            ..+..++.+++|+...          ...|.+++|+|++++|++++.|+.|++||+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                                  1234567788887643          45789999999999999999999999999999


Q ss_pred             CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                      ++....+..+.         ..+.+++|  +|++ ++++++.|+.|++||+++++ .+..+..|...+.+++|+|++++|
T Consensus       279 ~~~~~~~~~~~---------~~i~~~~~--~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          279 GNSQNCFYGHS---------QSIVSASW--VGDD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKY  345 (425)
T ss_dssp             BSCSEEECCCS---------SCEEEEEE--ETTT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEE
T ss_pred             CccceEecCCC---------ccEEEEEE--CCCC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEE
Confidence            88877776543         56999999  7788 99999999999999999866 488888899999999999999999


Q ss_pred             EEEeCCCCEEEEECCCCe--------------------EEeEEeccccC--ceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          274 YIGNGSGDLASVDIRTGK--------------------LLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ++++.||.|++||+++++                    ++..+..| ..  .|++++|+|++++|++++.||.|++||++
T Consensus       346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-QDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-TCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-ccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            999999999999999888                    88889887 55  99999999999999999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=269.17  Aligned_cols=287  Identities=10%  Similarity=0.112  Sum_probs=228.8

Q ss_pred             cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----CcchheeeccCC
Q 019405           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----GDLRVAISNAGD   96 (341)
Q Consensus        21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~~~~   96 (341)
                      +.||.|++|++......  +....+ .|...+.+++|++++.    +|++|+.||.|++|++.+    .+.+..+..   
T Consensus        42 ~~d~~v~iw~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~----~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~---  111 (416)
T 2pm9_A           42 STDSSLELWSLLAADSE--KPIASL-QVDSKFNDLDWSHNNK----IIAGALDNGSLELYSTNEANNAINSMARFSN---  111 (416)
T ss_dssp             CCCCCCEEEESSSGGGC--SCSCCC-CCSSCEEEEEECSSSS----CEEEEESSSCEEEECCSSTTSCCCEEEECCC---
T ss_pred             CCCCeEEEEEccCCCCC--cEEEEE-ecCCceEEEEECCCCC----eEEEEccCCeEEEeecccccccccchhhccC---
Confidence            78999999999876211  233334 5788999999987665    899999999999999987    234444443   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE-EEeecCCceEEEEecCC-C
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDIS-E  174 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~-~~~~~~~~i~~~~~~~~-~  174 (341)
                           |...+.++.+.+....       .+++++.|+.+.+|++......... ...... ....+...|.+++|+|+ +
T Consensus       112 -----h~~~v~~~~~~~~~~~-------~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~  178 (416)
T 2pm9_A          112 -----HSSSVKTVKFNAKQDN-------VLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSMSSVDEVISLAWNQSLA  178 (416)
T ss_dssp             -----SSSCCCEEEECSSSTT-------BEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSCCSSCCCCEEEECSSCT
T ss_pred             -----CccceEEEEEcCCCCC-------EEEEEcCCCeEEEEECCCCcccccc-ccccccccccCCCCCeeEEEeCCCCC
Confidence                 5577888888765232       8999999999999998754310000 001110 01235678999999998 7


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCC---eEEEEEcCCCCce
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH---QVRLYDTSAQRRP  250 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~---~i~iwd~~~~~~~  250 (341)
                      .++++++.|+.|++||+++++.+..+..+...   ..|...+.+++|  +|++ .++++++.|+   .|++||+++...+
T Consensus       179 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~  253 (416)
T 2pm9_A          179 HVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEW--HPKNSTRVATATGSDNDPSILIWDLRNANTP  253 (416)
T ss_dssp             TEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEE--CSSCTTEEEEEECCSSSCCCCEEETTSTTSC
T ss_pred             cEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEE--CCCCCCEEEEEECCCCCceEEEEeCCCCCCC
Confidence            89999999999999999999888877765311   112366999999  7876 6899999998   9999999987556


Q ss_pred             eEEEE-ecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC-CEEEEEeCCCcEEE
Q 019405          251 VMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRF  327 (341)
Q Consensus       251 ~~~~~-~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~v~i  327 (341)
                      +..+. .|...|.+++|+| ++.+|++++.|+.|++||+++++++..+..| ...|++++|+|++ .+|++++.|+.|++
T Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~i  332 (416)
T 2pm9_A          254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAPDLFACASFDNKIEV  332 (416)
T ss_dssp             SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred             cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCCCEEEEEecCCcEEE
Confidence            77787 8999999999999 8999999999999999999999999999998 8999999999999 79999999999999


Q ss_pred             EEcCCCcee
Q 019405          328 WDIKTRQLL  336 (341)
Q Consensus       328 wd~~~~~~~  336 (341)
                      ||+.+++..
T Consensus       333 w~~~~~~~~  341 (416)
T 2pm9_A          333 QTLQNLTNT  341 (416)
T ss_dssp             EESCCCCCS
T ss_pred             EEccCCCCC
Confidence            999887643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-36  Score=259.64  Aligned_cols=257  Identities=21%  Similarity=0.188  Sum_probs=208.0

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCC----------CCCCCceeeEeeeeccc
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA----------QPEDDGIVGLHLFKRQR  116 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  116 (341)
                      +|...|.+++|++++.    +|++|+ +++++||++.+++.+..+..+.....          ..+...+.++.+.+...
T Consensus        62 ~h~~~V~~v~fspdg~----~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             ECSSCCCEEEECTTSS----EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             CCCCEEEEEEECCCCC----EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            5899999999998776    888876 78999999999988777655321100          01223466777766555


Q ss_pred             cccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce
Q 019405          117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       117 ~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~  196 (341)
                              .+++++.|+.+++|++....        .+..+. .|...|.+++|+|++++|++++.|++|++||+++++.
T Consensus       137 --------~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          137 --------FLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             --------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             --------EEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence                    89999999999999986432        344443 4678899999999999999999999999999999887


Q ss_pred             eeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEE-------EecCCCeEEEEEcC
Q 019405          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSF-------DFRETPIKAVAEEP  268 (341)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~  268 (341)
                      ...+...          ..+.+++|  +| ++.+|++++.|+.|++||+++++. +..+       .+|...|.+++|+|
T Consensus       200 ~~~~~~~----------~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~  266 (393)
T 1erj_A          200 SLTLSIE----------DGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTR  266 (393)
T ss_dssp             EEEEECS----------SCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECT
T ss_pred             EEEEEcC----------CCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECC
Confidence            7666532          44889999  66 889999999999999999998664 5444       46889999999999


Q ss_pred             CCceEEEEeCCCCEEEEECCCC------------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          269 DSFNIYIGNGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      ++++|++|+.|+.|++||+++.            .+...+.+| ...|.+++|+|++.+|++++.|+.|++||+++++++
T Consensus       267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  345 (393)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            9999999999999999999753            345677787 889999999999999999999999999999999887


Q ss_pred             eee
Q 019405          337 SAV  339 (341)
Q Consensus       337 ~~~  339 (341)
                      ..+
T Consensus       346 ~~l  348 (393)
T 1erj_A          346 LML  348 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=247.35  Aligned_cols=269  Identities=13%  Similarity=0.112  Sum_probs=221.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chhee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI   91 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~   91 (341)
                      -.+++++.||.|++|++...     +....+..|...+.+++|++++.    +|++++.||.|++|++.+..   ....+
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~dg~i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTGQGFLNSVCYDSEKE----LLLFGGKDTMINGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSS-----EEEEEEEECSSCEEEEEEETTTT----EEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred             CEEEEEEcCCcEEEEECCCC-----EEEEEeecCCccEEEEEECCCCC----EEEEecCCCeEEEEEeeecCCCCcccch
Confidence            45889999999999999765     55666778899999999998766    89999999999999987643   33444


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ..        +...+.++.+  ...        .+++++.||.+.+|+.          ...+..+. .+...+.++.+.
T Consensus       101 ~~--------~~~~i~~~~~--~~~--------~l~~~~~d~~i~~~d~----------~~~~~~~~-~~~~~v~~~~~~  151 (313)
T 3odt_A          101 IG--------HQGNVCSLSF--QDG--------VVISGSWDKTAKVWKE----------GSLVYNLQ-AHNASVWDAKVV  151 (313)
T ss_dssp             CC--------CSSCEEEEEE--ETT--------EEEEEETTSEEEEEET----------TEEEEEEE-CCSSCEEEEEEE
T ss_pred             hh--------cccCEEEEEe--cCC--------EEEEEeCCCCEEEEcC----------CcEEEecc-cCCCceeEEEEc
Confidence            33        5577888877  233        8999999999999981          11334444 367889999998


Q ss_pred             C-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      | +++++++++.|+.|++||.  .+....+...        +...+.+++|  +|++. +++++.|+.|++||+++++ +
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~--------~~~~i~~~~~--~~~~~-~~~~~~dg~i~i~d~~~~~-~  217 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQN--DKVIKTFSGI--------HNDVVRHLAV--VDDGH-FISCSNDGLIKLVDMHTGD-V  217 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEET--TEEEEEECSS--------CSSCEEEEEE--EETTE-EEEEETTSEEEEEETTTCC-E
T ss_pred             cCCCCEEEEEECCCCEEEEec--CceEEEEecc--------CcccEEEEEE--cCCCe-EEEccCCCeEEEEECCchh-h
Confidence            8 8999999999999999994  4444444442        2356999999  67776 8999999999999999876 4


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +..+..|..+|.+++|+|++ .|++++.||.|++||+++++++..+..| ...|.+++|+|+++ +++++.||.|++||+
T Consensus       218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            88899999999999999999 6889999999999999999999999988 88999999999998 667999999999999


Q ss_pred             CCCceeee
Q 019405          331 KTRQLLSA  338 (341)
Q Consensus       331 ~~~~~~~~  338 (341)
                      ++++.+..
T Consensus       295 ~~~~~~~~  302 (313)
T 3odt_A          295 EKSRWASE  302 (313)
T ss_dssp             CGGGCCC-
T ss_pred             CCCceeeh
Confidence            99876654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-35  Score=249.83  Aligned_cols=267  Identities=11%  Similarity=0.085  Sum_probs=218.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeecc--CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheee
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAIS   92 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~   92 (341)
                      +++++ ||.+++|++......  .....+.  .|...+.+++|++++.    +|++++.||.|++||+.+++.  ...+.
T Consensus        66 l~~~~-dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~d~~i~~~d~~~~~~~~~~~~~  138 (337)
T 1gxr_A           66 VYTGG-KGCVKVWDISHPGNK--SPVSQLDCLNRDNYIRSCKLLPDGC----TLIVGGEASTLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             EEEEC-BSEEEEEETTSTTCC--SCSEEEECSCTTSBEEEEEECTTSS----EEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred             EEEcC-CCeEEEEECCCCCce--eeeecccccCCCCcEEEEEEcCCCC----EEEEEcCCCcEEEEECCCCCcceeeecc
Confidence            44555 999999999875211  2222333  6888999999988665    899999999999999988763  33333


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      .        +...+.++.+.+...        .+++++.+|.+.+|++....        .+..+. .+...+.+++|+|
T Consensus       139 ~--------~~~~i~~~~~~~~~~--------~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~~  193 (337)
T 1gxr_A          139 S--------SAPACYALAISPDSK--------VCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISN  193 (337)
T ss_dssp             C--------SSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEECT
T ss_pred             c--------CCCceEEEEECCCCC--------EEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEECC
Confidence            3        446678888776555        89999999999999986433        344444 3677899999999


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      +++++++++.|+.|++||+++++....+..          ...+.+++|  +|++++|++++.|+.|++||+++.+  ..
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~v~~~~~--s~~~~~l~~~~~~~~i~~~~~~~~~--~~  259 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDF----------TSQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--KY  259 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEEC----------SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--EE
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeecC----------CCceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCC--eE
Confidence            999999999999999999999888776542          255899999  8999999999999999999999865  45


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... | ...|.+++|+|++++|++++.||.|++||+.
T Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            677899999999999999999999999999999999998885543 4 7899999999999999999999999999973

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.1e-36  Score=250.13  Aligned_cols=273  Identities=15%  Similarity=0.162  Sum_probs=212.5

Q ss_pred             eeeecCCCCeEEEEEecCccCccceee--eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      +++.+.|+.|++|++.+.     +++.  .+.+|...|.+++|++++.    +|++|+.||+|+|||+++++.+..+..|
T Consensus        38 ~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~~~~~~----~l~sgs~Dg~v~iw~~~~~~~~~~~~~h  108 (318)
T 4ggc_A           38 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAWIKEGN----YLAVGTSSAEVQLWDVQQQKRLRNMTSH  108 (318)
T ss_dssp             EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEECCCCC----EEEEEECCCcEEEeecCCceeEEEecCc
Confidence            566667899999998765     4443  4456888899999988776    8999999999999999999998888774


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                              ...+.+...  ...        .+++++.++.+.+|+.....       ..+.... .+...+..+.+++++
T Consensus       109 --------~~~~~~~~~--~~~--------~l~s~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          109 --------SARVGSLSW--NSY--------ILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPDG  162 (318)
T ss_dssp             --------SSCEEEEEE--ETT--------EEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred             --------cceEEEeec--CCC--------EEEEEecCCceEeeecCCCc-------eeEEEEc-CccCceEEEEEcCCC
Confidence                    244443332  222        89999999999999865332       1333333 467789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EE--EEEeCCCeEEEEEcCCCCcee
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF--VAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l--~~~~~d~~i~iwd~~~~~~~~  251 (341)
                      +++++++.|+.|++||+++++........     ...+...|.++.+  .+.+. .+  ++++.+++|++||.+....  
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~i~lwd~~~~~~--  233 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQT-----FTQHQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGAC--  233 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEE-----ECCCCSCEEEEEE--CTTSTTEEEEEECTTTCEEEEEETTTCCE--
T ss_pred             CEEEEEecCcceeEEECCCCcccccceee-----ecccCCceEEEEe--cCCCCcEEEEEecCCCCEEEEEecccccc--
Confidence            99999999999999999886543221111     0112356888888  55544 33  3567889999999988653  


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEe--CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      .....+...+..+.|+|++..+++++  .|+.|++||+++++++.++.+| .+.|++++|+|++++|++++.||+|+|||
T Consensus       234 ~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          234 LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            33445777899999999998877654  7899999999999999999998 89999999999999999999999999999


Q ss_pred             cCCCc
Q 019405          330 IKTRQ  334 (341)
Q Consensus       330 ~~~~~  334 (341)
                      +.+..
T Consensus       313 ~~~~d  317 (318)
T 4ggc_A          313 CFELD  317 (318)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            97654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-37  Score=273.55  Aligned_cols=287  Identities=10%  Similarity=-0.020  Sum_probs=208.7

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccC--CCCCceEEEEccCCeEEEeeCCCCcchhe--ee
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDLRVA--IS   92 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~   92 (341)
                      +.+++.||.|++|++.... ........+..|...+..++|+++.  .+++.+||+++.||+|+|||+.+++....  +.
T Consensus       176 laS~s~D~tI~iWd~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             ------CEEEEEEEEETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hccCCCCceEEEEEccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            4567889999999987651 1111223455677889999999973  23466999999999999999987643210  00


Q ss_pred             ccCC-CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE--E
Q 019405           93 NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS--K  169 (341)
Q Consensus        93 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~--~  169 (341)
                      ...+ .....+...+.++.|.+ ..        .|++|+.||++++|+++....       ....+. .|...|.++  .
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~-~~--------~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~~~  317 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLS-PT--------TVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVSTA  317 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESS-SS--------EEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEEEE
T ss_pred             ecCceEEEEcCCCCEEEEEecC-CC--------eEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEEEE
Confidence            0000 01123567888888864 23        899999999999999864321       222333 467889999  5


Q ss_pred             ecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          170 VDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       170 ~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      +++++ ++|++++.|++|++||+++++....+..+..       ...|.+++|  +|++..+++++.|++|++||++++.
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------~~~v~~v~f--sp~~~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------GSNLVPVVY--CPQIYSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------CCSCCCEEE--ETTTTEEEEECSSSEEEEEETTCTT
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------cCcccceEe--CCCcCeEEEeCCCCcEEEEECcccc
Confidence            78887 8999999999999999998776554443221       023788999  8899999999999999999999876


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC--------------------------------------
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--------------------------------------  290 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--------------------------------------  290 (341)
                      . +..+.+|...|++++|+|++++|++|+.|++|++||+..+                                      
T Consensus       389 ~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~  467 (524)
T 2j04_B          389 A-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVY  467 (524)
T ss_dssp             C-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCC
T ss_pred             c-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceec
Confidence            5 6778899999999999999999999999999999975321                                      


Q ss_pred             ------eEEeEEeccccCceeEEEecCCCC---EEEEEeCCCcEEEEEcCC
Q 019405          291 ------KLLGCFIGKCSGSIRSIARHPTLP---IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       291 ------~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~  332 (341)
                            .++..+.+| ...|++++|+|+++   .+++|+.||.|+||++.-
T Consensus       468 ~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          468 PLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             C-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                  112233445 78999999999965   999999999999999873

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.9e-37  Score=267.71  Aligned_cols=280  Identities=12%  Similarity=0.088  Sum_probs=219.8

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++++.||.+++|++...     +....+..+ ..+...++++++.    +|++|+.||.|++||+.+++....+..  
T Consensus        70 ~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~-~~~~~~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~--  137 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIR-----DGSKMLKRA-DYTAVDTAKLQMR----RFILGTTEGDIKVLDSNFNLQREIDQA--  137 (420)
T ss_dssp             TEEEEEETTEEEEEECCSE-----ETTTTSCSC-CEEEEEEECSSSC----EEEEEETTSCEEEECTTSCEEEEETTS--
T ss_pred             eEEEEEcCCcEEEEEeccc-----ceeeEEecC-CceEEEEEecCCC----EEEEEECCCCEEEEeCCCcceeeeccc--
Confidence            4788899999999998775     222233333 3333445555544    899999999999999998877665544  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            |...+.++.+.+...        .+++++.|+.+++|++....        .+..+. .|...|.+++|+|+++
T Consensus       138 ------h~~~v~~~~~~~~~~--------~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~  194 (420)
T 3vl1_A          138 ------HVSEITKLKFFPSGE--------ALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRGR  194 (420)
T ss_dssp             ------SSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTTT
T ss_pred             ------ccCccEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCCC
Confidence                  557899998877655        89999999999999986443        344444 4678999999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCcc---------------CccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---------------GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      +|++++.|+.|++||+++++.+..+..+.....               ...+...+.+++|  +|++++|++++.||.|+
T Consensus       195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~  272 (420)
T 3vl1_A          195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF--GTYGKYVIAGHVSGVIT  272 (420)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS--SCTTEEEEEEETTSCEE
T ss_pred             EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE--cCCCCEEEEEcCCCeEE
Confidence            999999999999999999998888765432110               0011234555666  78999999999999999


Q ss_pred             EEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCCe-EEeEEeccccCceeEEEecCCCCEEEE
Q 019405          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      +||+++++........|...|.+++|+|++. +|++|+.||.|++||+++++ ++..+..|+...|.++.+ +++++|++
T Consensus       273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s  351 (420)
T 3vl1_A          273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS  351 (420)
T ss_dssp             EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred             EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence            9999987753333345788999999999998 99999999999999999875 477788766888988865 57889999


Q ss_pred             EeCCCcEEEEEcCCC
Q 019405          319 CGLDSYLRFWDIKTR  333 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~  333 (341)
                      ++.|+.|++||+...
T Consensus       352 ~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          352 SGFDTSIKLDIISDP  366 (420)
T ss_dssp             ETTTEEEEEEEECCT
T ss_pred             ecCCccEEEEeccCC
Confidence            999999999998863

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.1e-37  Score=267.38  Aligned_cols=281  Identities=13%  Similarity=0.083  Sum_probs=207.6

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++|+.||.|++|++.... .  .....+.+|...|.+++|++..   +.+|++|+.||+|+|||++++.. ..+..+.
T Consensus       134 ~lasGs~dg~i~lWd~~~~~-~--~~~~~~~gH~~~V~~l~f~p~~---~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~  206 (435)
T 4e54_B          134 TVAVGSKGGDIMLWNFGIKD-K--PTFIKGIGAGGSITGLKFNPLN---TNQFYASSMEGTTRLQDFKGNIL-RVFASSD  206 (435)
T ss_dssp             CEEEEETTSCEEEECSSCCS-C--CEEECCCSSSCCCCEEEECSSC---TTEEEEECSSSCEEEEETTSCEE-EEEECCS
T ss_pred             EEEEEeCCCEEEEEECCCCC-c--eeEEEccCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEeeccCCce-eEEeccC
Confidence            47789999999999987651 1  2344667899999999998632   23899999999999999976543 3333211


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                           .....+.++.+.+...        .+++++.||.+.+|+++...         +..+. .|...|.+++|+|++.
T Consensus       207 -----~~~~~~~~~~~~~~~~--------~l~~g~~dg~i~~wd~~~~~---------~~~~~-~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          207 -----TINIWFCSLDVSASSR--------MVVTGDNVGNVILLNMDGKE---------LWNLR-MHKKKVTHVALNPCCD  263 (435)
T ss_dssp             -----SCSCCCCCEEEETTTT--------EEEEECSSSBEEEEESSSCB---------CCCSB-CCSSCEEEEEECTTCS
T ss_pred             -----CCCccEEEEEECCCCC--------EEEEEeCCCcEeeeccCcce---------eEEEe-cccceEEeeeecCCCc
Confidence                 1223455666655544        89999999999999985322         22222 3567899999999875


Q ss_pred             -EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          176 -FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       176 -~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                       ++++++.|+.|++||+++.+....+...      ..|...|.+++|  +|++.+|++++.|+.|++||+.++.. ...+
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~------~~h~~~v~~~~~--spdg~~l~s~~~D~~i~iwd~~~~~~-~~~~  334 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYS------LPHRHPVNAACF--SPDGARLLTTDQKSEIRVYSASQWDC-PLGL  334 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBC------CBCSSCEEECCB--CTTSSEEEEEESSSCEEEEESSSSSS-EEEE
T ss_pred             eEEEEecCcceeeEEecccccccceEEEe------eeccccccceeE--CCCCCeeEEEcCCCEEEEEECCCCcc-ceEE
Confidence             7889999999999999876654333221      124577999999  89999999999999999999998765 4455


Q ss_pred             EecCC------CeEEEEEcCCCceEEEEeC------------CCCEEEEECCCCeEEeEEeccccCceeEE-EecCCCCE
Q 019405          255 DFRET------PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPI  315 (341)
Q Consensus       255 ~~~~~------~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~  315 (341)
                      ..|..      .+....|+|++..+++++.            ++.|++||..+++.+..+..+|...|.++ +|+|+|.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence            44432      2334567777777766642            35799999999999988876558889987 69999999


Q ss_pred             EEEEeCCCcEEEEEcCCCcee
Q 019405          316 IASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      |++|+ |+.|+|||+++++..
T Consensus       415 lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          415 LASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEEC-SSEEEECCCC-----
T ss_pred             EEEEc-CCcEEEEECCcCeee
Confidence            99876 789999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=257.87  Aligned_cols=278  Identities=13%  Similarity=0.099  Sum_probs=215.7

Q ss_pred             eeeecC---CCCeEEEEEecCccCccceeee-ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-chhee
Q 019405           17 ALTFDS---LGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAI   91 (341)
Q Consensus        17 ~~~~~~---~g~i~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~   91 (341)
                      +++++.   ||.+++|++...     +.... ..+|...+.+++|+++. +++++|++|+.||.|++||+.+++ .+..+
T Consensus        34 ~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           34 VTMGNFARGTGVIQLYEIQHG-----DLKLLREIEKAKPIKCGTFGATS-LQQRYLATGDFGGNLHIWNLEAPEMPVYSV  107 (357)
T ss_dssp             EEEEC--CCCEEEEEEEECSS-----SEEEEEEEEESSCEEEEECTTCC-TTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEecCccCCCcEEEEEeCCCC-----cccceeeecccCcEEEEEEcCCC-CCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence            345554   899999999875     22212 22688999999998873 124589999999999999999887 66666


Q ss_pred             eccCCCCCCCCCCceeeEeeee-----ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec---CC
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFK-----RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SG  163 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~---~~  163 (341)
                      ..        +...+.++.+.+     ++.       ..+++++.||.+.+|++.....       .+..+....   ..
T Consensus       108 ~~--------~~~~v~~~~~~~~~~~s~~~-------~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~  165 (357)
T 3i2n_A          108 KG--------HKEIINAIDGIGGLGIGEGA-------PEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKR  165 (357)
T ss_dssp             CC--------CSSCEEEEEEESGGGCC-CC-------CEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCC
T ss_pred             Ee--------cccceEEEeeccccccCCCc-------cEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCC
Confidence            65        457788886643     222       2899999999999999864331       334443322   23


Q ss_pred             ceEEEE----ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC---CCCEEEEEeCC
Q 019405          164 TIAFSK----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID---DHRKFVAGTND  236 (341)
Q Consensus       164 ~i~~~~----~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d  236 (341)
                      .+.+++    |+|+++++++++.|+.|++||+++++......          +...|.+++|  +|   ++.+|++++.|
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~v~~~~~--~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----------IKNGVCSLEF--DRKDISMNKLVATSLE  233 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEE--SCSSSSCCEEEEEEST
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC----------CCCceEEEEc--CCCCCCCCEEEEECCC
Confidence            788887    78899999999999999999999887754422          2356999999  78   89999999999


Q ss_pred             CeEEEEEcCCCCceeEE-----EEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCC-------------------e
Q 019405          237 HQVRLYDTSAQRRPVMS-----FDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------K  291 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~-------------------~  291 (341)
                      +.|++||+++.+. +..     +..|...|++++|+|+++ +|++++.||.|++||++++                   +
T Consensus       234 g~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~  312 (357)
T 3i2n_A          234 GKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS  312 (357)
T ss_dssp             TEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred             CeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccc
Confidence            9999999987543 333     348999999999999998 8999999999999999753                   4


Q ss_pred             EEeEEeccccCceeEEEecCCCCEEE-EEeCCCcEEEEEcCCCcee
Q 019405          292 LLGCFIGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~  336 (341)
                      ++..+.+| ...|++++|+|++++|+ +++.|+.|++||+.+.+.+
T Consensus       313 ~~~~~~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          313 LLQNVTLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             EEEEEECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC----
T ss_pred             eeeccccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcccC
Confidence            67778887 89999999999999988 8999999999999987653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.3e-36  Score=251.37  Aligned_cols=257  Identities=13%  Similarity=0.165  Sum_probs=200.2

Q ss_pred             eeeeccCCCCCceeEEEeccC--CCCCceEEEEccCCeEEEeeCCCCcc-------hheeeccCCCCCCCCCCceeeEee
Q 019405           41 VVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLHL  111 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  111 (341)
                      ....+.+|...|++++|.+..  .+++++|++|+.|++|+|||+.+.+.       ...+.        .|...+.++.+
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--------~h~~~V~~~~~   84 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--------GHNHFVSDLAL   84 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--------CCSSCEEEEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--------cCCCceEEEEE
Confidence            445688899999999984432  23667999999999999999975432       22333        35678888888


Q ss_pred             eeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEEC
Q 019405          112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (341)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~  191 (341)
                      .+...        .+++++.|+.+++|++....        .+..+. .|...|.+++|+|++++|++++.|+.|++||+
T Consensus        85 ~~~~~--------~l~s~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           85 SQENC--------FAISSSWDKTLRLWDLRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             CSSTT--------EEEEEETTSEEEEEETTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             CCCCC--------EEEEEcCCCcEEEEECCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            76555        89999999999999986433        444444 46789999999999999999999999999999


Q ss_pred             CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC----------CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (341)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  261 (341)
                      .... .......      ..|..+|.+++|  +|++          .+|++++.|+.|++||...  .....+..|...|
T Consensus       148 ~~~~-~~~~~~~------~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v  216 (343)
T 2xzm_R          148 LGEC-KFSSAEK------ENHSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNV  216 (343)
T ss_dssp             SSCE-EEECCTT------TSCSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCE
T ss_pred             cCCc-eeeeecc------cCCCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccc
Confidence            7433 2222211      114467999999  6665          7899999999999999543  3477888999999


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      .+++|+|++++|++|+.|+.|++||+.+ ......+. + ...|.+++|+|++++++++ .|+.|++||+.+++..
T Consensus       217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~-~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~  289 (343)
T 2xzm_R          217 NHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-A-GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA  289 (343)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-C-SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-C-CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence            9999999999999999999999999954 34444443 3 4679999999999887654 6888999999887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.3e-36  Score=261.99  Aligned_cols=281  Identities=9%  Similarity=0.108  Sum_probs=231.1

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      +-.+++++.||.|++|++.+.     +.+..+.+|...+.+++|+++.     +|++|+.||+|++||+++++.+..+..
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            346889999999999998876     6777888999999999997654     599999999999999999988877765


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc--------------CCc-eEEEEE
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES--------------SCS-TVKSWN  158 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~--------------~~~-~v~~~~  158 (341)
                              +...+.++.+.+....      ..+++++.||.+.+|++.........              ... .+... 
T Consensus       202 --------h~~~v~~l~~~~~~~~------~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  266 (464)
T 3v7d_B          202 --------HNSTVRCLDIVEYKNI------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-  266 (464)
T ss_dssp             --------CSSCEEEEEEEESSSC------EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-
T ss_pred             --------CCCccEEEEEecCCCC------CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-
Confidence                    4578888888753221      18999999999999998765422100              000 12222 


Q ss_pred             eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405          159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (341)
Q Consensus       159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  238 (341)
                      ..+...+.++  +++++++++++.|+.|++||+++++.+..+..+.         ..|.+++|  +|+++++++++.|+.
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~sg~~dg~  333 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISASMDTT  333 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEEETTSC
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCEEEEEE--cCCCCEEEEEeCCCc
Confidence            2344556665  5778999999999999999999999988887654         56999999  889999999999999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      |++||+++++ ++..+.+|...|.+++|+  +.+|++++.||.|++||+.+++....+.  +...+..++|+|++++|++
T Consensus       334 i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  408 (464)
T 3v7d_B          334 IRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVS  408 (464)
T ss_dssp             EEEEETTTTE-EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEE
T ss_pred             EEEEECCCCc-EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEE
Confidence            9999999876 488899999999999997  4699999999999999999988766654  3678888999999999999


Q ss_pred             EeCCCcEEEEEcCCCceeee
Q 019405          319 CGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ++ ||.|++||+++++++.+
T Consensus       409 ~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          409 GS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EE-TTEEEEEETTTCCEEES
T ss_pred             ec-CCeEEEEECCCCcEEeh
Confidence            98 89999999999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.4e-36  Score=251.29  Aligned_cols=272  Identities=11%  Similarity=0.071  Sum_probs=213.6

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeec--ccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKR--QRE  117 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  117 (341)
                      .+.+|...|.+++|++++.    +|++|+.||.|+|||+.++.    ....+..        +...+.++.+.+.  .. 
T Consensus         6 ~~~gH~~~v~~~~~~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~d~~-   72 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGR----HVATCSSDQHIKVFKLDKDTSNWELSDSWRA--------HDSSIVAIDWASPEYGR-   72 (351)
T ss_dssp             EECCCSSCEEEEEECSSSS----EEEEEETTSEEEEEEECSSSCCEEEEEEEEC--------CSSCEEEEEECCGGGCS-
T ss_pred             cCcccccceeEEEEcCCCC----EEEEeeCCCeEEEEECCCCCCcceecceecc--------CCCcEEEEEEcCCCCCC-
Confidence            4678999999999988666    89999999999999998764    3333333        5578999998775  33 


Q ss_pred             ccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCC
Q 019405          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~  194 (341)
                             .+++++.||.+++|++......... ....+..+. .+...|.+++|+|+  ++++++++.|+.|++||++++
T Consensus        73 -------~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           73 -------IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             -------EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             -------EEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence                   8999999999999999754321110 112334443 46788999999999  999999999999999999887


Q ss_pred             ceeeecCCCC----CCccCccCCeeeeEEEEEecCC---CCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEE
Q 019405          195 EKIWTAKPPP----KNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAE  266 (341)
Q Consensus       195 ~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~  266 (341)
                      +.+..+....    .......+...+.+++|  +|+   +.++++++.++.+.+|+...++. .+..+..|...|++++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             TCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             HHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            6544332100    00011124467999999  665   88999999999998888776542 35666779999999999


Q ss_pred             cCCC----ceEEEEeCCCCEEEEECCCC----------------------------------------------eEEeEE
Q 019405          267 EPDS----FNIYIGNGSGDLASVDIRTG----------------------------------------------KLLGCF  296 (341)
Q Consensus       267 ~~~~----~~l~~g~~dg~i~iwd~~~~----------------------------------------------~~~~~~  296 (341)
                      +|++    .+|++|+.||.|++||++++                                              +++..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            9998    89999999999999999864                                              667778


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+| ...|++++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       303 ~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          303 DDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            887 899999999999999999999999999999998766554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.4e-37  Score=254.73  Aligned_cols=250  Identities=10%  Similarity=0.077  Sum_probs=194.4

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecc-ccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESS  120 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  120 (341)
                      .+.+|...|.+++|++++.    +|++|+.|++|+|||+.+++  .+..+..        |.+.+.++.|.++. ..   
T Consensus         8 ~~~~H~~~V~~v~~s~~g~----~lasgs~D~~v~lwd~~~~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~---   72 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGT----RLATCSSDRSVKIFDVRNGGQILIADLRG--------HEGPVWQVAWAHPMYGN---   72 (316)
T ss_dssp             ------CCEEEEEECGGGC----EEEEEETTTEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEECCGGGSS---
T ss_pred             ecccccCeEEEeeEcCCCC----EEEEEeCCCeEEEEEecCCCcEEEEEEcC--------CCccEEEEEeCCCCCCC---
Confidence            3567999999999998776    89999999999999998764  3445554        55789888886542 22   


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCcee-
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKI-  197 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~-  197 (341)
                          .|++++.|+++++|++.....      ..+..+. .|...|.+++|+|+  +.+|++++.|+.|++||++++... 
T Consensus        73 ----~l~s~s~D~~v~iWd~~~~~~------~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           73 ----ILASCSYDRKVIIWREENGTW------EKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             ----CEEEEETTSCEEEECCSSSCC------CEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             ----EEEEEECCCEEEEEECCCCcc------eEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence                899999999999999864320      1223332 36778999999997  789999999999999999875322 


Q ss_pred             --eecCCCCCCccCccCCeeeeEEEEEecCC-----------------CCEEEEEeCCCeEEEEEcCCCC--ceeEEEEe
Q 019405          198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-----------------HRKFVAGTNDHQVRLYDTSAQR--RPVMSFDF  256 (341)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~  256 (341)
                        ..+..         |...+.+++|  +|+                 +.+|++++.|++|++||++...  .++..+.+
T Consensus       142 ~~~~~~~---------h~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~  210 (316)
T 3bg1_A          142 VKKINNA---------HTIGCNAVSW--APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA  210 (316)
T ss_dssp             ECCBTTS---------SSSCBCCCEE--CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred             eeeeecc---------ccCCcceEEE--ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence              22222         3356888999  555                 4689999999999999997542  24667788


Q ss_pred             cCCCeEEEEEcCCC----ceEEEEeCCCCEEEEECCCC---e-EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          257 RETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       257 ~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      |...|.+++|+|++    .+|++++.|+.|++||+++.   + ....+..| ...|++++|+|++++|++++.|+.|++|
T Consensus       211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            99999999999986    78999999999999999762   1 22344555 8899999999999999999999999999


Q ss_pred             EcC
Q 019405          329 DIK  331 (341)
Q Consensus       329 d~~  331 (341)
                      +..
T Consensus       290 ~~~  292 (316)
T 3bg1_A          290 KES  292 (316)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-37  Score=265.97  Aligned_cols=282  Identities=10%  Similarity=0.040  Sum_probs=223.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------ch
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LR   88 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~   88 (341)
                      ..+++++.||.+++|++.....+ .+....+..|...+.+++|++++   +.+|++++.||.|++||+.+++      ..
T Consensus        80 ~~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           80 KIIAGALDNGSLELYSTNEANNA-INSMARFSNHSSSVKTVKFNAKQ---DNVLASGGNNGEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             SCEEEEESSSCEEEECCSSTTSC-CCEEEECCCSSSCCCEEEECSSS---TTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred             CeEEEEccCCeEEEeeccccccc-ccchhhccCCccceEEEEEcCCC---CCEEEEEcCCCeEEEEECCCCccccccccc
Confidence            34677889999999999873222 13566788899999999998872   2389999999999999998876      22


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-----CC
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SG  163 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-----~~  163 (341)
                      ..+.     ....+...+.++.+.+....       .+++++.||.+.+|++....        .+..+....     ..
T Consensus       156 ~~~~-----~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~~  215 (416)
T 2pm9_A          156 LTPG-----QSMSSVDEVISLAWNQSLAH-------VFASAGSSNFASIWDLKAKK--------EVIHLSYTSPNSGIKQ  215 (416)
T ss_dssp             BCCC-----CSCCSSCCCCEEEECSSCTT-------EEEEESSSSCEEEEETTTTE--------EEEEECCCCCSSCCCC
T ss_pred             cccc-----cccCCCCCeeEEEeCCCCCc-------EEEEEcCCCCEEEEECCCCC--------cceEEeccccccccCC
Confidence            2211     11235678888888776332       89999999999999986433        444444332     67


Q ss_pred             ceEEEEecCCC-CEEEEeeCCC---eEEEEECCCC-ceeeecC-CCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC
Q 019405          164 TIAFSKVDISE-KFSLFGGKGV---EVNVWDLDKC-EKIWTAK-PPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND  236 (341)
Q Consensus       164 ~i~~~~~~~~~-~~l~~~~~d~---~v~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d  236 (341)
                      .+.+++|+|++ .++++++.|+   .|++||++++ +....+. .         |...|.+++|  +| ++.+|++++.|
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~v~~~~~--s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---------HQKGILSLDW--CHQDEHLLLSSGRD  284 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---------CSSCEEEEEE--CSSCSSCEEEEESS
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---------ccCceeEEEe--CCCCCCeEEEEeCC
Confidence            89999999997 6899999998   9999999986 4444444 3         3366999999  77 89999999999


Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEec-----------------
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIG-----------------  298 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------------  298 (341)
                      +.|++||+++++. +..+..|...|.+++|+|++ .+|++++.|+.|++||+.+++.......                 
T Consensus       285 g~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          285 NTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred             CCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            9999999998764 88899999999999999999 8999999999999999987653222111                 


Q ss_pred             ------------------cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          299 ------------------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       299 ------------------~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                                        + ..++.+++|+|+|++|++++.|+.|+||++.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                              3 667889999999999999999999999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.6e-35  Score=253.79  Aligned_cols=271  Identities=13%  Similarity=0.110  Sum_probs=213.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      ..+++++.||.|++|++....   ........+|...+.+++|++ +..    +|++++.|+.|++||+.+ +.+..+..
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~d~~i~iwd~~~-~~~~~~~~  158 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTN----QLFVSSIRGATTLRDFSG-SVIQVFAK  158 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEE----EEEEEETTTEEEEEETTS-CEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCC----EEEEEeCCCEEEEEECCC-CceEEEec
Confidence            468889999999999998651   122223346999999999998 444    799999999999999985 44455544


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      +.     .+...+.++.+.+...        .+++++.|+.+.+|++..         ..+..+. .+...|.+++|+|+
T Consensus       159 ~~-----~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~i~d~~~---------~~~~~~~-~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          159 TD-----SWDYWYCCVDVSVSRQ--------MLATGDSTGRLLLLGLDG---------HEIFKEK-LHKAKVTHAEFNPR  215 (383)
T ss_dssp             CC-----CSSCCEEEEEEETTTT--------EEEEEETTSEEEEEETTS---------CEEEEEE-CSSSCEEEEEECSS
T ss_pred             cC-----CCCCCeEEEEECCCCC--------EEEEECCCCCEEEEECCC---------CEEEEec-cCCCcEEEEEECCC
Confidence            21     2346788888877655        999999999999999831         1444444 36789999999999


Q ss_pred             CC-EEEEeeCCCeEEEEECCC----CceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCC
Q 019405          174 EK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       174 ~~-~l~~~~~d~~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ++ ++++++.|+.|++||+++    +..+..+.          |...|.+++|  +| ++.+|++++.|+.|++||++++
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP----------HEKPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE----------CSSCEEEEEE--CTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEec----------CCCceEEEEE--cCCCCCEEEEEcCCCcEEEEECCCC
Confidence            98 999999999999999987    44444442          3366999999  88 9999999999999999999987


Q ss_pred             CceeEEEEecC-----------------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc-ccCceeEEEe
Q 019405          248 RRPVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIAR  309 (341)
Q Consensus       248 ~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~  309 (341)
                      +. ...+..|.                 ..+..++|+|++++  +|+.|+.|++||+.+++++..+.++ +...+..++|
T Consensus       284 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~  360 (383)
T 3ei3_B          284 SK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF  360 (383)
T ss_dssp             TS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred             cc-ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence            65 45555443                 23445667777766  7789999999999999999999874 2567777899


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCC
Q 019405          310 HPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       310 ~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +|++++|++++ |+.|++||+++
T Consensus       361 s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          361 SPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ecCccEEEEec-CCcEEEEecCC
Confidence            99999999997 99999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-35  Score=255.22  Aligned_cols=268  Identities=14%  Similarity=0.172  Sum_probs=215.4

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc------chheeeccCCCCCCCCCCceeeEeeeec
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (341)
                      ....+.+|...|++++|++      ++|++|+.||.|+||++.+++      .+..+..        +...+.++.+.+.
T Consensus         8 ~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~   73 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV--------HKSGLHHVDVLQA   73 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC--------CTTCEEEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEec--------CCCcEEEEEEecc
Confidence            4456778999999999976      379999999999999998877      4455544        5578889988876


Q ss_pred             ----c---ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec----CCceEEEEec----CCCCE-EE
Q 019405          115 ----Q---REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVD----ISEKF-SL  178 (341)
Q Consensus       115 ----~---~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~~~~----~~~~~-l~  178 (341)
                          .   .        .+++++.||.+.+|++.......   ...+..+....    ...|.+++|+    |++++ |+
T Consensus        74 ~~~~g~~~~--------~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~  142 (397)
T 1sq9_A           74 IERDAFELC--------LVATTSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV  142 (397)
T ss_dssp             EETTTEEEE--------EEEEEETTSCEEEEEEEECTTTC---CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred             cccCCcccc--------EEEEEcCCCCEEEEEccCCcccc---cccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence                4   4        89999999999999997654200   00134443321    4789999999    99999 99


Q ss_pred             EeeCCCeEEEEECCC------Cceee-----ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          179 FGGKGVEVNVWDLDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       179 ~~~~d~~v~i~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      +++.|+.|++||+++      ++.+.     .+...  ......|...+.+++|  +|++ +|++++.|+.|++||+++.
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~  217 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTL  217 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--ECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTT
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeee--eccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCC
Confidence            999999999999987      55444     33210  0000113466999999  8889 9999999999999999986


Q ss_pred             CceeEEEEe---c---CCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEec-------------cccCcee
Q 019405          248 RRPVMSFDF---R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIR  305 (341)
Q Consensus       248 ~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~~i~  305 (341)
                      + ++..+..   |   ...|.+++|+|++.+|++++.|   +.|++||+++++.+..+..             | ...|.
T Consensus       218 ~-~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~  295 (397)
T 1sq9_A          218 R-PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVM  295 (397)
T ss_dssp             E-EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEE
T ss_pred             c-eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEE
Confidence            5 4888888   8   8999999999999999999999   9999999999999999988             7 89999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      +++|+|++++|++++.||.|++||+++++++.++.
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            99999999999999999999999999999887764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.9e-36  Score=259.30  Aligned_cols=268  Identities=14%  Similarity=0.222  Sum_probs=219.9

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .-.+++++.||.|++|++.+.     +....+.+|...+.++++  +    +++|++|+.||+|++||+.+++.+..+..
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~--~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  211 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQY--D----ERVIITGSSDSTVRVWDVNTGEMLNTLIH  211 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEESSSCCEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEEEE--C----CCEEEEEcCCCeEEEEECCCCcEEEEEcC
Confidence            446789999999999998775     567788889999998887  3    44899999999999999999988877765


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                              +...+.++.+.  ..        .+++++.||.+.+|++......      ........+...|.++++  +
T Consensus       212 --------h~~~v~~l~~~--~~--------~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~~~~--~  265 (435)
T 1p22_A          212 --------HCEAVLHLRFN--NG--------MMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVVDF--D  265 (435)
T ss_dssp             --------CCSCEEEEECC--TT--------EEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEEEE--E
T ss_pred             --------CCCcEEEEEEc--CC--------EEEEeeCCCcEEEEeCCCCCCc------eeeeEecCCCCcEEEEEe--C
Confidence                    44678777763  22        8999999999999998654311      112223356778999998  6


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      ++++++++.|+.|++||+++++.+..+..+.         ..|.++.|    +++++++|+.|+.|++||+++++. +..
T Consensus       266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~g~~dg~i~iwd~~~~~~-~~~  331 (435)
T 1p22_A          266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGAC-LRV  331 (435)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCCE-EEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCCCCE-EEE
Confidence            8899999999999999999999988887654         55888888    468999999999999999998764 888


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccccCceeEEEecCCCCEEEEEeCCCc
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~  324 (341)
                      +.+|...|.+++|  ++.+|++|+.||.|++||+++++         ++..+.+| .+.|.+++|  ++.+|++++.||.
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence            9999999999999  67899999999999999998765         78888888 899999999  7889999999999


Q ss_pred             EEEEEcCCCceee
Q 019405          325 LRFWDIKTRQLLS  337 (341)
Q Consensus       325 v~iwd~~~~~~~~  337 (341)
                      |++||+.+.....
T Consensus       407 i~iwd~~~~~~~~  419 (435)
T 1p22_A          407 ILIWDFLNDPAAQ  419 (435)
T ss_dssp             EEEEC--------
T ss_pred             EEEEECCCCCCcc
Confidence            9999998765543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=262.47  Aligned_cols=270  Identities=13%  Similarity=0.162  Sum_probs=213.2

Q ss_pred             ceeeec-cCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCC---Ccchh-eeeccCCCCCCCCCCceeeEeeee
Q 019405           40 KVVERW-GDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLN---GDLRV-AISNAGDSGAQPEDDGIVGLHLFK  113 (341)
Q Consensus        40 ~~~~~~-~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  113 (341)
                      +++..+ .+|...|.+++|++ ++.    +|++|+.||+|+|||+.+   +.... ....       .+...+.++.+.+
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~----~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~  121 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETP----YLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-------DCSSTVTQITMIP  121 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSC----EEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-------ECSSCEEEEEECT
T ss_pred             eEEeeeccCCCCceEEEEECCCCCC----EEEEecCCceEEEeECcccccCcccceeeec-------cCCCCEEEEEEeC
Confidence            566677 77999999999998 665    899999999999999876   33221 1221       2457899999886


Q ss_pred             ccccccccccceeEEEcccceeEEEEeeeccc---ccccCCceEEEEEee---cCCceEEEE--ecCCCCEEEEeeCCCe
Q 019405          114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSWNVC---ASGTIAFSK--VDISEKFSLFGGKGVE  185 (341)
Q Consensus       114 ~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---~~~~~~~~v~~~~~~---~~~~i~~~~--~~~~~~~l~~~~~d~~  185 (341)
                      ...        .+++++.||.+++|+++....   ........++.....   +...+.++.  ++++++++++++.|+.
T Consensus       122 ~~~--------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  193 (437)
T 3gre_A          122 NFD--------AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSR  193 (437)
T ss_dssp             TSS--------EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSE
T ss_pred             CCC--------EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCe
Confidence            555        899999999999999963211   110011122233222   345677776  5688999999999999


Q ss_pred             EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCeEEE
Q 019405          186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAV  264 (341)
Q Consensus       186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~  264 (341)
                      |++||+++++.+..+..+.       |...|.+++|  +|++.+|++++.||.|++||+++++ ++..+. .|..+|.++
T Consensus       194 i~iwd~~~~~~~~~~~~~~-------h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          194 VIIFDIRTLERLQIIENSP-------RHGAVSSICI--DEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHV  263 (437)
T ss_dssp             EEEEETTTCCEEEEEECCG-------GGCCEEEEEE--CTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEE
T ss_pred             EEEEeCCCCeeeEEEccCC-------CCCceEEEEE--CCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEE
Confidence            9999999999988887632       2356999999  8999999999999999999999855 477765 677799999


Q ss_pred             EEc----CCCceEEEEeCCCCEEEEECCCCeEEeEEecc-------------------------ccCceeEEEecCCCCE
Q 019405          265 AEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSIRSIARHPTLPI  315 (341)
Q Consensus       265 ~~~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~  315 (341)
                      +|+    |++.+|++|+.|+.|++||+++++++..+.+|                         |...|++++|+ ++++
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~  342 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI  342 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence            665    46789999999999999999999998888754                         35668899999 7789


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeee
Q 019405          316 IASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |++++.|+.|++||+.+++++..+
T Consensus       343 l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          343 LLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             EEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EEecCCCCeEEEEECCCcccceEE
Confidence            999999999999999999887765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.2e-35  Score=250.87  Aligned_cols=280  Identities=10%  Similarity=0.043  Sum_probs=197.0

Q ss_pred             CeEEEEEecCccCccc-----eeeeccCCCCCceeEEEeccC-----CCCCceEEEEccCCeEEEeeCCCCcchhe-eec
Q 019405           25 LIKVIEARGEHGGVPK-----VVERWGDPHSSNCVLAASIDD-----SQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN   93 (341)
Q Consensus        25 ~i~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~s~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~   93 (341)
                      .|++|++.........     ....+..|+..+.+++++.+.     ...+..|++++.|+.+|+|++........ ...
T Consensus        44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~  123 (365)
T 4h5i_A           44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS  123 (365)
T ss_dssp             EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee
Confidence            4788988765221100     112456677777766654321     11112333445688899998865433222 221


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeE--EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .........+..+.++++.+...        .++  +++.|+.++||++....        .+  ....+...|.+++|+
T Consensus       124 ~~~~~~~~~~~~~~~v~fSpDg~--------~la~as~~~d~~i~iwd~~~~~--------~~--~~~~~~~~V~~v~fs  185 (365)
T 4h5i_A          124 VDFDASTNADDYTKLVYISREGT--------VAAIASSKVPAIMRIIDPSDLT--------EK--FEIETRGEVKDLHFS  185 (365)
T ss_dssp             ECSSCCCCTTCCEEEEEECTTSS--------CEEEEESCSSCEEEEEETTTTE--------EE--EEEECSSCCCEEEEC
T ss_pred             eceeecCCcccCEEEEEEcCCCC--------EEEEEECCCCCEEEEeECCCCc--------EE--EEeCCCCceEEEEEc
Confidence            11111122334455555544333        554  44578999999986433        23  334577889999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC----eEEEEEcCCC
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQ  247 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~  247 (341)
                      |+++++++++.+ .+.+|+..+++.........       |...|.+++|  +|++.++++++.|+    .+++|++...
T Consensus       186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~f--spdg~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFD-------KNWSLSKINF--IADDTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             TTSSEEEEECSS-CEEEEETTTCCEEEEECCCC-------TTEEEEEEEE--EETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             cCCceEEeccce-eEEEEEeccCcceeeeecCC-------CCCCEEEEEE--cCCCCEEEEEecCCcceeEEeecccccc
Confidence            999999999866 56777777776654332221       3467999999  88999999999887    6889998765


Q ss_pred             Cce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCEEEEEeCCC
Q 019405          248 RRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       248 ~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      ...   ...+..|..+|++++|+|+|++||+|+.|+.|+|||+++++++..+ .+| ..+|++++|+|||++|+++|.|+
T Consensus       256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCC
Confidence            431   3456778899999999999999999999999999999999999886 566 99999999999999999999999


Q ss_pred             cEEEEEcCCC
Q 019405          324 YLRFWDIKTR  333 (341)
Q Consensus       324 ~v~iwd~~~~  333 (341)
                      +|+|||+...
T Consensus       335 tvrvw~ip~~  344 (365)
T 4h5i_A          335 TIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEEEcCCC
Confidence            9999999653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.8e-34  Score=242.59  Aligned_cols=286  Identities=13%  Similarity=0.109  Sum_probs=223.2

Q ss_pred             CceeeeecCCCCeEEEEEecCcc------CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc
Q 019405           14 PLRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~   87 (341)
                      ++..++.++||....+.......      ...+.. ...+|...+.+++|++++.    +|++++ ||.|++||+.+++.
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~----~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSS----EEEEEC-BSEEEEEETTSTTC
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCc----EEEEcC-CCeEEEEECCCCCc
Confidence            34566677777665433222100      001222 2336899999999987666    888888 99999999988765


Q ss_pred             hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (341)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~  167 (341)
                      ...+....   ...+...+.++.+.+...        .+++++.+|.+.+|++.....       ........+...+.+
T Consensus        85 ~~~~~~~~---~~~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~  146 (337)
T 1gxr_A           85 KSPVSQLD---CLNRDNYIRSCKLLPDGC--------TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYA  146 (337)
T ss_dssp             CSCSEEEE---CSCTTSBEEEEEECTTSS--------EEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEE
T ss_pred             eeeeeccc---ccCCCCcEEEEEEcCCCC--------EEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEE
Confidence            44433211   013557788888877655        899999999999999864321       122222345678999


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      ++|+|+++++++++.|+.|++||+++++....+..+.         ..+.+++|  +|++++|++++.|+.|++||++++
T Consensus       147 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~  215 (337)
T 1gxr_A          147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc---------CceEEEEE--CCCCCEEEEEecCCcEEEEECCCC
Confidence            9999999999999999999999999998888877654         56999999  889999999999999999999986


Q ss_pred             CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       248 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      +. +..+ .+...+.+++|+|++++|++++.++.|++||+++++.. .+..| ...|.+++|+|++++|++++.||.|++
T Consensus       216 ~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          216 RQ-LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EE-EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ce-Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC-ccceeEEEECCCCCEEEEecCCCcEEE
Confidence            53 5554 47789999999999999999999999999999988764 56666 889999999999999999999999999


Q ss_pred             EEcCCCceeee
Q 019405          328 WDIKTRQLLSA  338 (341)
Q Consensus       328 wd~~~~~~~~~  338 (341)
                      ||+++++.+..
T Consensus       292 ~~~~~~~~~~~  302 (337)
T 1gxr_A          292 WRTPYGASIFQ  302 (337)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECCCCeEEEE
Confidence            99999887644

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=252.78  Aligned_cols=257  Identities=12%  Similarity=0.086  Sum_probs=204.4

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeeccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (341)
                      ++..+.+|...|.+++|++++.    +|++|+.||.|+|||+.  +++.+..+..        |...+.++.|.+.... 
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~-   69 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFG-   69 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS----EEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGC-
T ss_pred             ccEEecCCcccEEEEEEcCCCC----EEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCC-
Confidence            4456788999999999998766    89999999999999997  4455555554        5578888988765211 


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~  196 (341)
                           ..+++++.||.+++|++.....      ..+..+ ..+...|.+++|+|+  ++++++++.|+.|++||+++...
T Consensus        70 -----~~l~s~~~dg~v~iwd~~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           70 -----TILASCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             -----SEEEEEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             -----CEEEEeccCCEEEEEEcCCCce------eEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence                 1899999999999999875321      022222 236788999999999  99999999999999999987643


Q ss_pred             e--eecCCCCCCccCccCCeeeeEEEEEecC-------------CCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecC
Q 019405          197 I--WTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRE  258 (341)
Q Consensus       197 ~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~  258 (341)
                      .  ..+..         |...|.+++|  +|             ++.+|++++.|+.|++||++....   ....+..|.
T Consensus       138 ~~~~~~~~---------~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~  206 (379)
T 3jrp_A          138 TSPIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  206 (379)
T ss_dssp             CCEEEEEC---------CTTCEEEEEE--CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             eeeEEecC---------CCCceEEEEE--cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence            2  22323         3356999999  66             689999999999999999987653   345677799


Q ss_pred             CCeEEEEEcCC---CceEEEEeCCCCEEEEECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          259 TPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       259 ~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ..|.+++|+|+   +.+|++++.||.|++||+++++     .+.....| ...|++++|+|++++|++++.||.|++||+
T Consensus       207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            99999999999   8999999999999999999863     22222234 789999999999999999999999999999


Q ss_pred             CCCc
Q 019405          331 KTRQ  334 (341)
Q Consensus       331 ~~~~  334 (341)
                      .++.
T Consensus       286 ~~~~  289 (379)
T 3jrp_A          286 NLEG  289 (379)
T ss_dssp             EETT
T ss_pred             CCCC
Confidence            8544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.8e-35  Score=251.84  Aligned_cols=273  Identities=12%  Similarity=0.096  Sum_probs=222.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++...     +....+..|...+.+++|++++.    +|++|+.|+.|++||+.+++.+..+.. 
T Consensus       110 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~----~l~s~s~d~~i~iwd~~~~~~~~~~~~-  179 (420)
T 3vl1_A          110 RRFILGTTEGDIKVLDSNFN-----LQREIDQAHVSEITKLKFFPSGE----ALISSSQDMQLKIWSVKDGSNPRTLIG-  179 (420)
T ss_dssp             CEEEEEETTSCEEEECTTSC-----EEEEETTSSSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCCCEEEEC-
T ss_pred             CEEEEEECCCCEEEEeCCCc-----ceeeecccccCccEEEEECCCCC----EEEEEeCCCeEEEEeCCCCcCceEEcC-
Confidence            45888999999999998765     56667788999999999988765    899999999999999999988888776 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee--------------
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------------  160 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------------  160 (341)
                             |...+.++.+.+...        .+++++.||.+++|++....        .+..+...              
T Consensus       180 -------h~~~v~~~~~~~~~~--------~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~  236 (420)
T 3vl1_A          180 -------HRATVTDIAIIDRGR--------NVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSIALFV  236 (420)
T ss_dssp             -------CSSCEEEEEEETTTT--------EEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEEEEEE
T ss_pred             -------CCCcEEEEEEcCCCC--------EEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEEEEec
Confidence                   457788888877655        89999999999999986543        22222210              


Q ss_pred             ---------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EE
Q 019405          161 ---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (341)
Q Consensus       161 ---------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l  230 (341)
                               +...+.+++|+|+++++++++.||.|++||+++++....+...        |...|.+++|  +|++. +|
T Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~--~~~~~~~l  306 (420)
T 3vl1_A          237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--------FTCSCNSLTV--DGNNANYI  306 (420)
T ss_dssp             CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------TSSCEEEEEE--CSSCTTEE
T ss_pred             CCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------cCCCceeEEE--eCCCCCEE
Confidence                     1245666777899999999999999999999998877776542        2356999999  88888 99


Q ss_pred             EEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe---------EEeEEeccc
Q 019405          231 VAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKC  300 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~~~  300 (341)
                      ++++.||.|++||+++++.++..+.. |...+.++.+ +++++|++++.|+.|++||+...+         ....+..+ 
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-  384 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-  384 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-
Confidence            99999999999999987766778877 6667888755 577899999999999999987631         12234455 


Q ss_pred             cCceeEEEecCCCC---EEEEEeCCCcEEEEEcCC
Q 019405          301 SGSIRSIARHPTLP---IIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       301 ~~~i~~~~~~~~~~---~l~s~~~dg~v~iwd~~~  332 (341)
                      ...|.+++|+|+++   .+++++.+|.+.+|++++
T Consensus       385 ~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          385 DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            78999999999999   788888999999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=254.92  Aligned_cols=278  Identities=8%  Similarity=0.084  Sum_probs=218.5

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC-----C
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG-----D   96 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~   96 (341)
                      ++.+++|++...     +....+..|...+.+++|++ ++.    +|++|+.||.|++||+.+++....+....     .
T Consensus        22 ~~~~~v~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~----~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   92 (408)
T 4a11_B           22 ESTRRVLGLELN-----KDRDVERIHGGGINTLDIEPVEGR----YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR   92 (408)
T ss_dssp             HHHHHHHTEEEC-----TTEEECCCCSSCEEEEEECTTTCC----EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECT
T ss_pred             cCcceeeccccC-----cceeeeeccCCcEEEEEEecCCCC----EEEEEcCCCeEEEEECCCCcccceEeccccccccc
Confidence            344566766654     34446777999999999987 655    89999999999999999887766654210     0


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---  173 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~---  173 (341)
                      .....+...+.++.+.+....       .+++++.||.+.+|++....        .+..+.  +...+.++.+++.   
T Consensus        93 ~~~~~~~~~v~~~~~~~~~~~-------~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~  155 (408)
T 4a11_B           93 DHPDVHRYSVETVQWYPHDTG-------MFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVSTK  155 (408)
T ss_dssp             TCTTCCSSCEEEEEECTTCTT-------CEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCSS
T ss_pred             cccccCCCcEEEEEEccCCCc-------EEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCCC
Confidence            111236688999988774432       89999999999999986433        334443  5678899999884   


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      +.++++++.|+.|++||+++++....+..+.         ..|.+++|  +|++. +|++++.|+.|++||++....++.
T Consensus       156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~  224 (408)
T 4a11_B          156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLI  224 (408)
T ss_dssp             CCEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCSE
T ss_pred             CcEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCcccc
Confidence            4599999999999999999988887777654         56999999  78888 589999999999999988664455


Q ss_pred             EE---------------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC---------------------------
Q 019405          253 SF---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------------------------  290 (341)
Q Consensus       253 ~~---------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---------------------------  290 (341)
                      .+               ..|...|.+++|+|++++|++++.||.|++||+.++                           
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
T 4a11_B          225 TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS  304 (408)
T ss_dssp             ECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS
T ss_pred             cccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC
Confidence            55               568889999999999999999999999999998754                           


Q ss_pred             --------------------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          291 --------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       291 --------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                                          +++..+.+| ...|++++|+|++++|++++.||.|++||+++++.+..
T Consensus       305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          305 SEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             SCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             ceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence                                345566677 88999999999999999999999999999999887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.8e-34  Score=250.93  Aligned_cols=266  Identities=15%  Similarity=0.227  Sum_probs=227.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++.+.     +.+..+.+|...+.+++++      +++|++|+.||+|++||+.+++.+..+.. 
T Consensus       130 ~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  197 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR------DNIIISGSTDRTLKVWNAETGECIHTLYG-  197 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred             CEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec------CCEEEEEeCCCeEEEEECCcCcEEEEECC-
Confidence            45789999999999999876     6777888999999999886      23799999999999999999988877765 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+.++.+.  ..        .+++++.||.+.+|++....        .+..+. .+...|.++++  ++
T Consensus       198 -------h~~~v~~~~~~--~~--------~l~s~s~dg~i~~wd~~~~~--------~~~~~~-~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          198 -------HTSTVRCMHLH--EK--------RVVSGSRDATLRVWDIETGQ--------CLHVLM-GHVAAVRCVQY--DG  249 (445)
T ss_dssp             -------CSSCEEEEEEE--TT--------EEEEEETTSEEEEEESSSCC--------EEEEEE-CCSSCEEEEEE--CS
T ss_pred             -------CCCcEEEEEec--CC--------EEEEEeCCCEEEEEECCCCc--------EEEEEc-CCcccEEEEEE--CC
Confidence                   44677777762  22        89999999999999986433        344444 36778999998  68


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +++++++.|+.|++||+++++.+..+..+.         ..|.++.|    ++.++++++.|+.|++||+++++. +..+
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~~-~~~~  315 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGNC-IHTL  315 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCCE-EEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCCCE-EEEE
Confidence            899999999999999999999888887654         55888888    788999999999999999998764 8888


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..|...+.++.++  +.+|++|+.||.|++||+++++.+..+..   | ...|++++|+  +++|++++.||.|++||+.
T Consensus       316 ~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          316 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            8899999988875  56999999999999999999999999986   5 7899999995  5799999999999999999


Q ss_pred             CCceeeee
Q 019405          332 TRQLLSAV  339 (341)
Q Consensus       332 ~~~~~~~~  339 (341)
                      +++.+..+
T Consensus       391 ~~~~~~~~  398 (445)
T 2ovr_B          391 TGEFIRNL  398 (445)
T ss_dssp             TCCEEEEE
T ss_pred             CCceeeee
Confidence            99988776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-36  Score=260.66  Aligned_cols=286  Identities=12%  Similarity=0.117  Sum_probs=218.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCc-cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC---CCcchhe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~   90 (341)
                      -.+++++.||.|++|++.....+. .+....+ .|...+.+++|++++.    +|++|+.||.|++||++   +++....
T Consensus        77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~----~l~s~s~dg~i~vwd~~~~~~~~~~~~  151 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD----AFAVSSKDGQIIVLKVNHYQQESEVKF  151 (437)
T ss_dssp             CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS----EEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred             CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC----EEEEEeCCCEEEEEEeccccCCceeec
Confidence            468889999999999998732221 2222334 4889999999997655    89999999999999995   5555444


Q ss_pred             eeccC--CCCCCC--CCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-cCCce
Q 019405           91 ISNAG--DSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTI  165 (341)
Q Consensus        91 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i  165 (341)
                      ...+.  ...+.+  +...+.++.+.....      ...+++++.|+.+.+|++....        .+..+... +...|
T Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v  217 (437)
T 3gre_A          152 LNCECIRKINLKNFGKNEYAVRMRAFVNEE------KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAV  217 (437)
T ss_dssp             EEEEEEEEEEGGGGSSCCCEEEEEEEECSS------CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCE
T ss_pred             cccceeEEEEccCcccccCceEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCce
Confidence            33221  011112  445666666543222      1289999999999999986433        45555543 67899


Q ss_pred             EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe--cCCCCEEEEEeCCCeEEEEE
Q 019405          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+++|+|++++|++|+.||.|++||+++++.+..+...        +...|.+++|.|  ++++.+|++++.|+.|++||
T Consensus       218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            99999999999999999999999999998888776522        236699997743  35688999999999999999


Q ss_pred             cCCCCceeEEEEe--------------------------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          244 TSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       244 ~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      +++++. +..+..                          |...|++++|+ ++++|++|+.|+.|++||+.+++.+..+.
T Consensus       290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          290 FVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             cCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            998664 566654                          44558888998 77899999999999999999988777776


Q ss_pred             cc------------------------------------ccCceeEEEecCC--CCEEEEEeCCCcEEEEE
Q 019405          298 GK------------------------------------CSGSIRSIARHPT--LPIIASCGLDSYLRFWD  329 (341)
Q Consensus       298 ~~------------------------------------~~~~i~~~~~~~~--~~~l~s~~~dg~v~iwd  329 (341)
                      +|                                    |.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            53                                    4889999999998  77999999999999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-34  Score=248.74  Aligned_cols=260  Identities=15%  Similarity=0.134  Sum_probs=209.5

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++...+.+|...+.+++|++++.   ++|++|+.||.|+|||+.+++....+...      .+...+.++.|.+.+..  
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~--  132 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHP---TTVAVGSKGGDIILWDYDVQNKTSFIQGM------GPGDAITGMKFNQFNTN--  132 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCT---TEEEEEEBTSCEEEEETTSTTCEEEECCC------STTCBEEEEEEETTEEE--
T ss_pred             ceEEeccCCCCCEEEEEECCCCC---CEEEEEcCCCeEEEEeCCCcccceeeecC------CcCCceeEEEeCCCCCC--
Confidence            45567788999999999998762   38999999999999999988776665531      35688999988773332  


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  197 (341)
                           .+++++.|+.+.+|++..         +.+..+....  ...|.+++|+|++++|++++.|+.|++||+ +++.+
T Consensus       133 -----~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~  197 (383)
T 3ei3_B          133 -----QLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI  197 (383)
T ss_dssp             -----EEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred             -----EEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence                 899999999999999862         2444444322  367999999999999999999999999999 56677


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCC---ceeEEEEecCCCeEEEEEcC-CCce
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSFN  272 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~  272 (341)
                      ..+..+.         ..|.+++|  +|+++ +|++++.|+.|++||+++.+   ..+..+ .|...|.+++|+| ++.+
T Consensus       198 ~~~~~h~---------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          198 FKEKLHK---------AKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTK  265 (383)
T ss_dssp             EEEECSS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCE
T ss_pred             EEeccCC---------CcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCE
Confidence            7776543         66999999  88888 99999999999999999732   224444 6999999999999 9999


Q ss_pred             EEEEeCCCCEEEEECCCCeEEeEEeccc------c----------CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          273 IYIGNGSGDLASVDIRTGKLLGCFIGKC------S----------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~----------~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      |++++.|+.|++||+++++.+..+.+|.      .          ..+..++|+|++++  +++.|+.|++||+.+++++
T Consensus       266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence            9999999999999999888777766541      1          23444667777766  7789999999999999988


Q ss_pred             eee
Q 019405          337 SAV  339 (341)
Q Consensus       337 ~~~  339 (341)
                      .++
T Consensus       344 ~~l  346 (383)
T 3ei3_B          344 HQL  346 (383)
T ss_dssp             EEE
T ss_pred             eee
Confidence            776

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.7e-34  Score=240.44  Aligned_cols=264  Identities=11%  Similarity=0.142  Sum_probs=209.7

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++..++.+|.+.|++++|+++..   ++|+||+.|++|+|||+.+.+.........   ...|...+.++.+.+...   
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~---~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~---l~~h~~~V~~~~~s~dg~---   99 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFP---DMILSASRDKTIIMWKLTRDETNYGIPQRA---LRGHSHFVSDVVISSDGQ---   99 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCT---TEEEEEETTSCEEEEEECCSSSCSEEEEEE---ECCCSSCEEEEEECTTSS---
T ss_pred             EEEEEECCccCCEEEEEEeCCCC---CEEEEEcCCCeEEEEECCCCCcccceeeEE---EeCCCCCEEEEEECCCCC---
Confidence            45567899999999999998642   389999999999999998755432211100   113567888888876655   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.|+.+.+|+.....         .......+...+....++++++++++++.|+.+++||+........
T Consensus       100 -----~l~s~~~d~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A          100 -----FALSGSWDGTLRLWDLTTGT---------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             -----EEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             -----EEEEEcccccceEEeecccc---------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence                 89999999999999975332         2333334566788889999999999999999999999976554332


Q ss_pred             -cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                       ...         |...+..++|.+.+...++++++.|+.|++||+++.+. +..+.+|..+|++++|+|++++|++|+.
T Consensus       166 ~~~~---------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          166 QDES---------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             CSSS---------CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             Eecc---------ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence             222         33568899995444556889999999999999998664 8888899999999999999999999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+.|++||+++.+.+..+..+  ..|.+++|+|++.++ +++.|+.|++||++++.++..+
T Consensus       236 Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          236 DGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             TCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEEeccCceeeeecCC--ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEec
Confidence            999999999999999988864  689999999987654 5667999999999988776654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-35  Score=254.82  Aligned_cols=277  Identities=15%  Similarity=0.148  Sum_probs=219.8

Q ss_pred             eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec-cCCCCCceEEEEccCCeEEEeeCCCC-------cchhe
Q 019405           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNG-------DLRVA   90 (341)
Q Consensus        19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~   90 (341)
                      +++.+|.|++|++.... ...+....+.+|...|.+++|++ ++.    +|++|+.||+|+|||+.++       +.+..
T Consensus        52 ~~~~~g~i~v~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~p~~~~----~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~  126 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTG-RVDKNVPLVCGHTAPVLDIAWCPHNDN----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT  126 (402)
T ss_dssp             CCSSSCCEEEEETTCCE-ECCTTCCCBCCCSSCEEEEEECTTCTT----EEEEEETTSEEEEEECCTTCCSSCBCSCSEE
T ss_pred             EEcCCCEEEEEECccCC-CCCCCCceEecCCCCEEEEEeCCCCCC----EEEEEeCCCeEEEEEccCCCCccccCCceEE
Confidence            47889999999986641 11123446778999999999998 554    8999999999999999887       34445


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEE
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSK  169 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~  169 (341)
                      +..        |...+.++.+.+....       .+++++.||.+.+|++....        .+..+. ..+...|.+++
T Consensus       127 ~~~--------h~~~v~~~~~~p~~~~-------~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          127 LEG--------HTKRVGIVAWHPTAQN-------VLLSAGCDNVILVWDVGTGA--------AVLTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             EEC--------CSSCEEEEEECSSBTT-------EEEEEETTSCEEEEETTTTE--------EEEEECTTTCCSCEEEEE
T ss_pred             ecC--------CCCeEEEEEECcCCCC-------EEEEEcCCCEEEEEECCCCC--------ccEEEecCCCCCceEEEE
Confidence            544        5578888888776532       89999999999999986433        444442 34678999999


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeec-CCCCCCccCccCCeeeeEEEEEecCCCCEEEEE---eCCCeEEEEEcC
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---TNDHQVRLYDTS  245 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~  245 (341)
                      |+|++++|++++.|+.|++||+++++.+..+ ..+..        ..+.++.|  +|++.+|+++   +.|+.|++||++
T Consensus       184 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          184 WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------TRPVHAVF--VSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------SSCCEEEE--CSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------CcceEEEE--cCCCcEEEEeccCCCCceEEEEcCc
Confidence            9999999999999999999999999888877 44432        23788899  8899999999   789999999999


Q ss_pred             CCCceeEEEE-ecCCCeEEEEEcCCCceEE-EEeCCCCEEEEECCCCeE-EeEEecc-ccCceeEEEecCCCCEEEEEeC
Q 019405          246 AQRRPVMSFD-FRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL-LGCFIGK-CSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       246 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      +.+.++.... .|...+.+++|+|++++|+ +|+.|+.|++||+.+++. +..+..+ +...|.+++|+|++.++++  .
T Consensus       254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~  331 (402)
T 2aq5_A          254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K  331 (402)
T ss_dssp             BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred             cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence            8765454444 4677899999999999886 455799999999998873 4444433 2589999999999988764  5


Q ss_pred             CCcEEEEEcCCCce
Q 019405          322 DSYLRFWDIKTRQL  335 (341)
Q Consensus       322 dg~v~iwd~~~~~~  335 (341)
                      |+.+++|++.++++
T Consensus       332 ~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          332 CEIARFYKLHERKC  345 (402)
T ss_dssp             TEEEEEEEEETTEE
T ss_pred             ceeEEEEEcCCCcE
Confidence            66999999998765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6e-36  Score=255.83  Aligned_cols=274  Identities=10%  Similarity=0.074  Sum_probs=203.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chhee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI   91 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~   91 (341)
                      -.+++++.||.|++|++...   .++....+.+|...+.+++|++++.    +|++++.|++|+|||+.+++   ....+
T Consensus        24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~----~l~s~s~d~~v~vwd~~~~~~~~~~~~~   96 (377)
T 3dwl_C           24 TEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTCVDWAPKSN----RIVTCSQDRNAYVYEKRPDGTWKQTLVL   96 (377)
T ss_dssp             SEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEEEEECTTTC----CEEEEETTSSEEEC------CCCCEEEC
T ss_pred             CEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEEEEEeCCCC----EEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence            35778889999999999864   2245567888999999999988765    89999999999999998876   22222


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .        .+...+.++.+.+...        .+++++.|+.+++|+++....     ...++.+...|...|.+++|+
T Consensus        97 ~--------~~~~~v~~~~~~~~~~--------~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           97 L--------RLNRAATFVRWSPNED--------KFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             C--------CCSSCEEEEECCTTSS--------CCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEEC
T ss_pred             c--------ccCCceEEEEECCCCC--------EEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEc
Confidence            2        3557888888877655        899999999999999875431     112344443367899999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCc------------------eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCE------------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  233 (341)
                      |++++|++++.|+.|++||+++.+                  .+..+          .|...|.+++|  +|++++|+++
T Consensus       156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~--sp~~~~l~~~  223 (377)
T 3dwl_C          156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGF--SPSGNALAYA  223 (377)
T ss_dssp             TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEE--CTTSSCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEE--CCCCCEEEEE
Confidence            999999999999999999996432                  22222          34577999999  8999999999


Q ss_pred             eCCCeEEEEEcCCCCce---eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--E----------------
Q 019405          234 TNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--L----------------  292 (341)
Q Consensus       234 ~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~----------------  292 (341)
                      +.|+.|++||+++++.+   +..+..|..+|.+++|+|++++|++|+.++.+ +|+.....  .                
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T 3dwl_C          224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT  302 (377)
T ss_dssp             ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred             eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence            99999999999987642   66788899999999999999999988766555 66654211  0                


Q ss_pred             ------------E------eEEe----------------ccccCceeEEEecCCC-C---EEEEEeCCCcEEEEEc
Q 019405          293 ------------L------GCFI----------------GKCSGSIRSIARHPTL-P---IIASCGLDSYLRFWDI  330 (341)
Q Consensus       293 ------------~------~~~~----------------~~~~~~i~~~~~~~~~-~---~l~s~~~dg~v~iwd~  330 (341)
                                  .      ..+.                .| .+.|+++++.+.. .   .|+|++.||.|++||+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                        0      1111                15 8899999976644 3   6999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-34  Score=266.47  Aligned_cols=259  Identities=12%  Similarity=0.184  Sum_probs=210.3

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-----hheeeccCCCCCCCCCCceeeEeeeecc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKRQ  115 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (341)
                      ....+.+|...|++++++++..   ++|++|+.|++|+||++.+...     ...+..        |...+.++.+.+..
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~s~~g  442 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLSSDG  442 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--------CSSCEEEEEECTTS
T ss_pred             hhhhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCCcccccccceecC--------CCCcEEEEEECCCC
Confidence            3345778999999999887653   4899999999999999976432     223333        55778888887665


Q ss_pred             ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          116 REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       116 ~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                      .        .+++++.||.+++|++....        .++.+. .|...|.+++|+|++++|++++.|++|++||.....
T Consensus       443 ~--------~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          443 Q--------FALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             S--------EEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             C--------EEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            5        89999999999999986433        344443 477899999999999999999999999999986544


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCC--CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                      ........      ..|...|.+++|  +|++  ..|++++.|++|++||+++.+. ...+.+|...|++++|+|++++|
T Consensus       506 ~~~~~~~~------~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~~l  576 (694)
T 3dm0_A          506 KYTISEGG------EGHRDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLC  576 (694)
T ss_dssp             EEEECSST------TSCSSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEE
T ss_pred             ceeeccCC------CCCCCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEE
Confidence            33222211      124577999999  6665  6899999999999999998664 78888999999999999999999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++|+.|+.|++||+++++.+..+..  ...|.+++|+|++.+|++++ |+.|++||+++++++..+
T Consensus       577 ~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          577 ASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             EEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence            9999999999999999999888765  46899999999998887765 566999999999887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.8e-35  Score=264.37  Aligned_cols=279  Identities=14%  Similarity=0.128  Sum_probs=206.7

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEecc-CCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASID-DSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~-~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      .+++++.||.+++|++...     +.+..+..|..   .+.+++|+++ +.    +|++++.||.|++||+.+++.+..+
T Consensus       175 ~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFVRDVEFSPDSGE----FVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCEEEEEECSTTCC----EEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceEEEEEECCCCCC----EEEEEeCCCeEEEEECCCCCEeEEe
Confidence            5888999999999997765     66778888888   8999999887 55    8999999999999999998887777


Q ss_pred             -eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-------------------------
Q 019405           92 -SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------------------------  145 (341)
Q Consensus        92 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-------------------------  145 (341)
                       ...     ..+...+.++.+. ...        .+++++.|+.+++|++.....                         
T Consensus       246 ~~~~-----~~~~~~v~~~~~~-~~~--------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (615)
T 1pgu_A          246 EDDQ-----EPVQGGIFALSWL-DSQ--------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR  311 (615)
T ss_dssp             CBTT-----BCCCSCEEEEEES-SSS--------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred             cccc-----cccCCceEEEEEc-CCC--------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence             300     0134566666665 333        667777777777776542210                         


Q ss_pred             -ccccCCceEEEEEee-------------------------------------------cCCceEEEEecCCCCEEEEee
Q 019405          146 -SAESSCSTVKSWNVC-------------------------------------------ASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       146 -~~~~~~~~v~~~~~~-------------------------------------------~~~~i~~~~~~~~~~~l~~~~  181 (341)
                       ..+..++.+++|+..                                           +...|.++++ ++++.+++++
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~  390 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS  390 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence             112234444444422                                           2223334444 2244444444


Q ss_pred             CCCeEEE-------------------------------------------------------------------------
Q 019405          182 KGVEVNV-------------------------------------------------------------------------  188 (341)
Q Consensus       182 ~d~~v~i-------------------------------------------------------------------------  188 (341)
                      .|+.|++                                                                         
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence            4444444                                                                         


Q ss_pred             -EECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEE
Q 019405          189 -WDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVA  265 (341)
Q Consensus       189 -~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~  265 (341)
                       ||+.+++.. ..+.         .|...|.+++|  +|++++|++++.|+.|++||+.+++. +..+.. |...|++++
T Consensus       471 ~~~~~~~~~~~~~~~---------~~~~~v~~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~  538 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKT---------PLRAKPSYISI--SPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAIS  538 (615)
T ss_dssp             EEETTEEEEEEECSS---------CCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEE
T ss_pred             EEECCCccccccccC---------CccCceEEEEE--CCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEE
Confidence             444433222 1222         24577999999  89999999999999999999998764 667776 999999999


Q ss_pred             EcC----------CCceEEEEeCCCCEEEEECCCC-eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          266 EEP----------DSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       266 ~~~----------~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      |+|          ++++|++++.||.|++||+.++ +++..+.+| ...|++++|+|+++ |++++.||.|++||+++
T Consensus       539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            999          9999999999999999999998 788888888 89999999999999 99999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-34  Score=243.52  Aligned_cols=269  Identities=14%  Similarity=0.154  Sum_probs=221.9

Q ss_pred             CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccc
Q 019405           37 GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQR  116 (341)
Q Consensus        37 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (341)
                      |.......+.+|...|.+++|++++.    +|++++.||.|++||+.+++.+..+..        +...+.++.+.+...
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~~~~~   87 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGD----LLFSCSKDSSASVWYSLNGERLGTLDG--------HTGTIWSIDVDCFTK   87 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSC----EEEEEESSSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTSS
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCC----EEEEEeCCCEEEEEeCCCchhhhhhhh--------cCCcEEEEEEcCCCC
Confidence            44444457888999999999998766    899999999999999999988888775        457788888876555


Q ss_pred             cccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC-----CeEEEEEC
Q 019405          117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDL  191 (341)
Q Consensus       117 ~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~i~d~  191 (341)
                              .+++++.||.+.+|++....        .+..+.  +...+.+++|+|+++++++++.+     +.|++||+
T Consensus        88 --------~l~s~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B           88 --------YCVTGSADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             --------EEEEEETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             --------EEEEEeCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence                    89999999999999986433        444444  67889999999999999999998     99999999


Q ss_pred             CCCceeeecCCCCCCc--cCccCC--eeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405          192 DKCEKIWTAKPPPKNS--LGIFTP--TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       192 ~~~~~~~~~~~~~~~~--~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  267 (341)
                      ........+.......  ....+.  ..+.+++|  +|++++|++++.|+.|++||+++...++..+..|...|.+++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  227 (369)
T 3zwl_B          150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS  227 (369)
T ss_dssp             EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCccceeecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC
Confidence            7654322211111000  000111  26999999  88999999999999999999998555688888999999999999


Q ss_pred             CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC--------------cEEEEEcCCC
Q 019405          268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------YLRFWDIKTR  333 (341)
Q Consensus       268 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--------------~v~iwd~~~~  333 (341)
                      |++.+|++++.|+.|++||+++++.+..+. + ...+..++|+|+++++++++.++              .+++||+.++
T Consensus       228 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          228 PDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             CCCCEEEEecCCceEEEEECCCCceeeeec-C-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            999999999999999999999999998887 3 68999999999999999999988              8999999999


Q ss_pred             ceeeee
Q 019405          334 QLLSAV  339 (341)
Q Consensus       334 ~~~~~~  339 (341)
                      +++..+
T Consensus       306 ~~~~~~  311 (369)
T 3zwl_B          306 EEIGRV  311 (369)
T ss_dssp             CEEEEE
T ss_pred             cchhhe
Confidence            887765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-34  Score=267.02  Aligned_cols=292  Identities=12%  Similarity=0.113  Sum_probs=219.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++++.||.|++|+....     +....+ .|...|..++|++ +.    +|++++.|++|+|||+.+++.+..+.. 
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~-~~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~~~~~~~~~~-   97 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQV-----EVVIKL-EDRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYSQKVLTTVFV-   97 (902)
T ss_dssp             TEEEEEETTSEEEEECSTTC-----EEEEEC-SSCCCEEEEEEET-TT----EEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----EEEEEc-CCCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence            35778889999999986554     343344 4778999999998 43    899999999999999999888777652 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc------------------------------
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK------------------------------  144 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~------------------------------  144 (341)
                              ...+.++.+.+...        .+++++.||.+++|++....                              
T Consensus        98 --------~~~V~~v~~sp~g~--------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           98 --------PGKITSIDTDASLD--------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             --------SSCEEEEECCTTCS--------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             --------CCCEEEEEECCCCC--------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence                    25677777766655        89999999999999874321                              


Q ss_pred             -----cccccCCceEEEEEeec----------------------------CCceEEEEecCCCCEEEEeeCCCeEEEEEC
Q 019405          145 -----VSAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (341)
Q Consensus       145 -----~~~~~~~~~v~~~~~~~----------------------------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~  191 (341)
                           .+.+..++.+ +|+...                            ...|.+++|+|++++|++++.|+.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence                 1245677888 888643                            245999999999999999999999999999


Q ss_pred             CCCceeee--cC---CC-------------C-------------C---C--------------c---cC-----------
Q 019405          192 DKCEKIWT--AK---PP-------------P-------------K---N--------------S---LG-----------  209 (341)
Q Consensus       192 ~~~~~~~~--~~---~~-------------~-------------~---~--------------~---~~-----------  209 (341)
                      ++++.+..  +.   .+             .             .   .              .   +.           
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            87665431  10   00             0             0   0              0   00           


Q ss_pred             ------------------cc-----------------------------------------------------------C
Q 019405          210 ------------------IF-----------------------------------------------------------T  212 (341)
Q Consensus       210 ------------------~~-----------------------------------------------------------~  212 (341)
                                        ..                                                           |
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                              00                                                           0


Q ss_pred             CeeeeEEEEEe--------------------------------cCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEE--
Q 019405          213 PTWFTSAAFLS--------------------------------IDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFD--  255 (341)
Q Consensus       213 ~~~v~~~~~~~--------------------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~--  255 (341)
                      ...|++++|.+                                +|++++|++|+.|++|++||+.++...   .....  
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence            01122222210                                466789999999999999999876421   11221  


Q ss_pred             -----ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC----------------------------------------
Q 019405          256 -----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------------------------------  290 (341)
Q Consensus       256 -----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----------------------------------------  290 (341)
                           +|...|++++|+|++++||+|+.||+|+|||+.++                                        
T Consensus       481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                 68889999999999999999999999999999765                                        


Q ss_pred             -----eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          291 -----KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       291 -----~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                           +++..+.+| .+.|++++|+|+| +||+|+.|++|++||++++..+.
T Consensus       561 ~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~  610 (902)
T 2oaj_A          561 VRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY  610 (902)
T ss_dssp             CSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence                 346778887 8999999999999 99999999999999998876653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.9e-35  Score=254.42  Aligned_cols=273  Identities=13%  Similarity=0.137  Sum_probs=202.9

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc-----------chheeeccCCC----CCCCCCCceeeEeee
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDS----GAQPEDDGIVGLHLF  112 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~~~~~  112 (341)
                      +...|.+++|++++.    +||+|+.||.|+||++.+++           ....+..|...    ......+.+.++.|.
T Consensus        27 ~~~~V~~v~~s~~g~----~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           27 EADIISTVEFNHSGE----LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGGSEEEEEECSSSS----EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccCcEEEEEECCCCC----EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            678899999998665    99999999999999998776           34455543100    000001668888887


Q ss_pred             eccccccccccceeEEEcccceeEEEEeeecccccc-----cC--------------------------CceEEEEEeec
Q 019405          113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE-----SS--------------------------CSTVKSWNVCA  161 (341)
Q Consensus       113 ~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~-----~~--------------------------~~~v~~~~~~~  161 (341)
                      +....      ..+++++.|+.+++|++........     ..                          ....+.+...|
T Consensus       103 ~~~~~------~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B          103 PQKNA------AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CCCSS------SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             CCCCc------ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            76521      1899999999999999976432100     00                          01122333457


Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCC-CEEEEEeCCCeE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQV  239 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i  239 (341)
                      ...|.+++|+|++++|++| .|+.|++||+++. +....+.....  ....|...|.+++|  +|++ ++|++++.|+.|
T Consensus       177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--NMEELTEVITAAEF--HPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--SGGGCCCCEEEEEE--CSSCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc--cccccCcceEEEEE--CCCCCcEEEEEeCCCeE
Confidence            7889999999999999998 7999999999843 33332211100  01124577999999  8888 999999999999


Q ss_pred             EEEEcCCCCc---eeEEEEecCC------------CeEEEEEcCCCceEEEEeCCCCEEEEECCC-CeEEeEEeccccCc
Q 019405          240 RLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS  303 (341)
Q Consensus       240 ~iwd~~~~~~---~~~~~~~~~~------------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~  303 (341)
                      ++||+++++.   .+..+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.+| ...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~  329 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYL  329 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGG
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccc
Confidence            9999998653   1577777775            8999999999999999999 9999999997 8888888887 432


Q ss_pred             ---------------eeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          304 ---------------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       304 ---------------i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                                     +..++|+|++++|++++.||.|++||+.+++.+.
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                           3349999999999999999999999999988753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-34  Score=280.24  Aligned_cols=288  Identities=15%  Similarity=0.254  Sum_probs=227.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++.+.     +.+..+.+|...|.+++|++++.    +|++++.||+|+|||+.+++.+..+..|
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~----~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLCCAFSSDDS----YIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEEEEEecCCC----EEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            35678889999999999876     56778889999999999998766    8999999999999999999988888764


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-----------------------ccccCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------SAESSC  151 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-----------------------~~~~~~  151 (341)
                              ...+.++.+.+....      ..+++++.|+.+.+|++.....                       ++++.+
T Consensus       699 --------~~~v~~~~~~~~~~~------~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          699 --------SEQVNCCHFTNKSNH------LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             --------SSCEEEEEECSSSSC------CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             --------CCcEEEEEEecCCCc------eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence                    355666655543221      1555666666666666433211                       133455


Q ss_pred             ceEEEEEee-----------------------------------------------------------------cCCceE
Q 019405          152 STVKSWNVC-----------------------------------------------------------------ASGTIA  166 (341)
Q Consensus       152 ~~v~~~~~~-----------------------------------------------------------------~~~~i~  166 (341)
                      +.+++|+..                                                                 +...+.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            555555532                                                                 234577


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +++|+|+++++++++.|+.|++||+.++.....+..+.         ..|.+++|  +|++++|++++.|+.|++||+..
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL---------SWVHGVMF--SPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc---------cceEEEEE--CCCCCEEEEEeCCCeEEEEEccc
Confidence            88899999999999999999999999988888877654         66999999  89999999999999999999753


Q ss_pred             CCc----------------------------eeEE--------EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          247 QRR----------------------------PVMS--------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       247 ~~~----------------------------~~~~--------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ...                            .+..        ...+...+.+++|+|+++++++|+.+|.|++||+.++
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            100                            0000        1123467999999999999999999999999999999


Q ss_pred             eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      +.+..+.+| ...|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus       994 ~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A          994 RVFSSGVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             SCEEECCCC-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred             ceeeecccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence            999999988 8999999999999999999999999999999887653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.7e-34  Score=243.47  Aligned_cols=246  Identities=10%  Similarity=0.085  Sum_probs=206.6

Q ss_pred             cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ..|..++.+++|++++.    +|++++.|+.|++||+.+++  .+..+..        +...+.++.+.+...       
T Consensus         5 ~~~~~~i~~~~~s~~~~----~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~-------   65 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDSN-------   65 (372)
T ss_dssp             ESCSSCCCEEEECTTSS----EEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTTT-------
T ss_pred             cccCCCeEEEEECCCCC----EEEEEeCCCEEEEEeCCCCcEEeeeeecC--------CCCcccEEEEeCCCC-------
Confidence            34889999999997765    89999999999999998876  6666665        457788888877555       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eee
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWT  199 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~  199 (341)
                       .+++++.||.+.+|++....        ...... ..+...|.+++|+|+++++++++.|+.|++||++.++.   ...
T Consensus        66 -~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  136 (372)
T 1k8k_C           66 -RIVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  136 (372)
T ss_dssp             -EEEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence             89999999999999986433        122221 34677899999999999999999999999999987663   222


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC------------------CCCceeEEEEecCCCe
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS------------------AQRRPVMSFDFRETPI  261 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v  261 (341)
                      +...        |...|.+++|  +|++++|++++.|+.|++||++                  .+ .++..+..|...|
T Consensus       137 ~~~~--------~~~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v  205 (372)
T 1k8k_C          137 IKKP--------IRSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWV  205 (372)
T ss_dssp             ECTT--------CCSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCE
T ss_pred             eecc--------cCCCeeEEEE--cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh-hheEecCCCCCeE
Confidence            2211        3366999999  8899999999999999999964                  33 3477777899999


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .+++|+|++.+|++++.|+.|++||+++++++..+..| ..+|.+++|+|++.+|+++ .|+.|++|++.+
T Consensus       206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999999999999999999999999999999999988 8899999999999988877 999999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.4e-34  Score=267.05  Aligned_cols=257  Identities=15%  Similarity=0.204  Sum_probs=221.5

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      +...+.+|...+.+++|++++.    +|++++.||.|+|||+.+++.+..+..        +..++.++.|.+...    
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~----~la~~~~~g~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~----   68 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEP----WVLTTLYSGRVEIWNYETQVEVRSIQV--------TETPVRAGKFIARKN----   68 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSS----EEEEEETTSEEEEEETTTTEEEEEEEC--------CSSCEEEEEEEGGGT----
T ss_pred             cceeeecCCCceEEEEECCCCC----EEEEEeCCCEEEEEECCCCceEEEEec--------CCCcEEEEEEeCCCC----
Confidence            4456788999999999988766    899999999999999999988888776        457788888887766    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeee
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWT  199 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~  199 (341)
                          .+++++.||.+.+|++....        .+..+. .+...|.+++|+|++++|++++.||.|++||++++ .....
T Consensus        69 ----~l~~~~~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           69 ----WIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             ----EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             ----EEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence                89999999999999986433        444443 36788999999999999999999999999999876 45555


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCeEEEEEcC--CCceEEE
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEP--DSFNIYI  275 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~  275 (341)
                      +..+.         ..|.+++|  +| ++..|++++.|+.|++||+.++.. ...+..+ ...+.+++|+|  ++.+|++
T Consensus       136 ~~~~~---------~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          136 FEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             EECCS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEE
T ss_pred             EcCCC---------CcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEE
Confidence            55443         56999999  77 788999999999999999988665 5555544 48899999999  9999999


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++.||.|++||+++++.+..+.+| ...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       204 ~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          204 ASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            999999999999999999999988 899999999999999999999999999999998887664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-34  Score=267.50  Aligned_cols=308  Identities=8%  Similarity=0.004  Sum_probs=215.3

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCC------------------CCCceeEEEeccCCCCCceEEEEccCCe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------------------HSSNCVLAASIDDSQNDPLLAVARKNGL   76 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~s~~~~~~~~~l~~~~~dg~   76 (341)
                      ..+++++.||.+ +|++...     +....+..|                  ...+.+++|++++.    +|++|+.||+
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~----~lasgs~Dg~  234 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL----HIITIHEDNS  234 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS----EEEEEETTCC
T ss_pred             CEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC----EEEEEECCCe
Confidence            357788999999 9998875     444444433                  56789999987755    8999999999


Q ss_pred             EEEeeCCCCcchhe--ee---ccCCCCCC-----CCCCceeeEeeeeccccccccccceeEEEccc-----ceeEEEEee
Q 019405           77 TDILNPLNGDLRVA--IS---NAGDSGAQ-----PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIE  141 (341)
Q Consensus        77 i~iw~~~~~~~~~~--~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----g~~~i~~~~  141 (341)
                      |++||+.+++++..  +.   .+.+....     .+...+.++.|.+....+   ....+++++.+     +.+.+|++.
T Consensus       235 i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd---~~~ll~sg~~~~~~~~~~v~~~~~~  311 (902)
T 2oaj_A          235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE---YTSLLISHKSISRGDNQSLTMIDLG  311 (902)
T ss_dssp             EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT---EEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred             EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC---CCEEEEeCCCCCCCCCceEEEEecC
Confidence            99999998876543  21   12110000     123467777775421100   00145555444     256666632


Q ss_pred             ec------------------------------------------c----------cccccCCceEEEEEeecC-------
Q 019405          142 VT------------------------------------------K----------VSAESSCSTVKSWNVCAS-------  162 (341)
Q Consensus       142 ~~------------------------------------------~----------~~~~~~~~~v~~~~~~~~-------  162 (341)
                      ..                                          +          ......++.+++|+...+       
T Consensus       312 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~  391 (902)
T 2oaj_A          312 YTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKAS  391 (902)
T ss_dssp             ECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGG
T ss_pred             CCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccc
Confidence            00                                          0          011223567888875321       


Q ss_pred             ----------CceEE----------------------------------EEecCCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          163 ----------GTIAF----------------------------------SKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       163 ----------~~i~~----------------------------------~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                                ..|.+                                  ++|+|++++|++|+.|++|++||+.++....
T Consensus       392 ~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~  471 (902)
T 2oaj_A          392 LFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD  471 (902)
T ss_dssp             GSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred             cCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence                      22333                                  3456889999999999999999998874210


Q ss_pred             --ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----------------------------
Q 019405          199 --TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----------------------------  248 (341)
Q Consensus       199 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------------------------  248 (341)
                        .+...........|...|.+++|  +|++++||+|+.||+|++||+.+++                            
T Consensus       472 ~~~~~~~l~~~~~~~h~~~V~svaf--spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (902)
T 2oaj_A          472 NASFEVNLSRTLNKAKELAVDKISF--AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV  549 (902)
T ss_dssp             TBCEEEEHHHHTTCSSSCCEEEEEE--ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred             CceEEeechhhcCCCCCCceeEEEe--cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence              00000000001135578999999  8999999999999999999997652                            


Q ss_pred             ----------------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE-----Ee-ccccCceeE
Q 019405          249 ----------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-----FI-GKCSGSIRS  306 (341)
Q Consensus       249 ----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-----~~-~~~~~~i~~  306 (341)
                                      +++..+.+|..+|++++|+|+| +||+|+.|++|++||++++..+..     +. +| .+.|++
T Consensus       550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~s  627 (902)
T 2oaj_A          550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTC  627 (902)
T ss_dssp             EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEE
T ss_pred             cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEE
Confidence                            2366778899999999999999 999999999999999998877642     22 66 889999


Q ss_pred             EEec-----CCC---CEEEEEeCCCcEEEEEc---CCCceeeee
Q 019405          307 IARH-----PTL---PIIASCGLDSYLRFWDI---KTRQLLSAV  339 (341)
Q Consensus       307 ~~~~-----~~~---~~l~s~~~dg~v~iwd~---~~~~~~~~~  339 (341)
                      ++|+     |||   ++|++++.|++|++||+   .+|+++.++
T Consensus       628 v~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~  671 (902)
T 2oaj_A          628 IEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQL  671 (902)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEE
T ss_pred             EEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEe
Confidence            9999     886   79999999999999999   788877654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=234.16  Aligned_cols=253  Identities=15%  Similarity=0.216  Sum_probs=211.8

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++...+.+|...|.+++| +++.    +|++|+.||.|++||+.+++....+..        +...+.++.+.+...   
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~---   72 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQWLGTVVYT--------GQGFLNSVCYDSEKE---   72 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSEEEEEEEE--------CSSCEEEEEEETTTT---
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCEEEEEeec--------CCccEEEEEECCCCC---
Confidence            566788999999999998 6655    899999999999999988887777766        347788888877665   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.||.+.+|++.....     ...+..+. .+...|.++.+  +++++++++.|+.|++||  .++....
T Consensus        73 -----~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           73 -----LLLFGGKDTMINGVPLFATSG-----EDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             -----EEEEEETTSCEEEEETTCCTT-----SCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             -----EEEEecCCCeEEEEEeeecCC-----CCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence                 999999999999999865431     12333333 46778999999  578999999999999999  5566666


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      +..+.         ..+.++.|. +++++++++++.|+.|++||..   .....+.. |...+.+++|+|++. +++++.
T Consensus       138 ~~~~~---------~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          138 LQAHN---------ASVWDAKVV-SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             EECCS---------SCEEEEEEE-ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred             cccCC---------CceeEEEEc-cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence            65543         558999995 3488999999999999999933   24666766 889999999999998 999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+.|++||+++++.+..+..| ...|++++|+|++ .|++++.||.|++||+++++++..+
T Consensus       204 dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             TSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence            999999999999999999988 8999999999999 6899999999999999999887765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.5e-33  Score=244.94  Aligned_cols=261  Identities=11%  Similarity=0.160  Sum_probs=220.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++...     +.+..+..|...+.+++++      +++|++|+.||+|++||+.+++.+..+.. 
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-  237 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETG-----ECIHTLYGHTSTVRCMHLH------EKRVVSGSRDATLRVWDIETGQCLHVLMG-  237 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEESSSCCEEEEEEC-
T ss_pred             CEEEEEeCCCeEEEEECCcC-----cEEEEECCCCCcEEEEEec------CCEEEEEeCCCEEEEEECCCCcEEEEEcC-
Confidence            36889999999999999876     6677888899999988874      23799999999999999999988887776 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+.++.+  ...        .+++++.||.+.+|++....        .+..+. .+...|.++.+  ++
T Consensus       238 -------~~~~v~~~~~--~~~--------~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~  289 (445)
T 2ovr_B          238 -------HVAAVRCVQY--DGR--------RVVSGAYDFMVKVWDPETET--------CLHTLQ-GHTNRVYSLQF--DG  289 (445)
T ss_dssp             -------CSSCEEEEEE--CSS--------CEEEEETTSCEEEEEGGGTE--------EEEEEC-CCSSCEEEEEE--CS
T ss_pred             -------CcccEEEEEE--CCC--------EEEEEcCCCEEEEEECCCCc--------EeEEec-CCCCceEEEEE--CC
Confidence                   4467777776  223        89999999999999986443        344444 35678999998  78


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +++++++.|+.|++||+++++.+..+..+.         ..+.++.+    +++++++++.||.|++||+++++. +..+
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~-~~~~  355 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMEL----KDNILVSGNADSTVKIWDIKTGQC-LQTL  355 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCCE-EEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEcCCc---------ccEEEEEE----eCCEEEEEeCCCeEEEEECCCCcE-EEEE
Confidence            999999999999999999999988887654         44777777    567999999999999999998764 7777


Q ss_pred             Ee---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe-----ccccCceeEEEecCCCCEEEEEeCCCc--
Q 019405          255 DF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSY--  324 (341)
Q Consensus       255 ~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~--  324 (341)
                      ..   |..+|.+++|+  +.+|++|+.||.|++||+.+++.+..+.     .+ .+.|++++|+|++.++++++.||.  
T Consensus       356 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~la~~~~dg~~~  432 (445)
T 2ovr_B          356 QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEE  432 (445)
T ss_dssp             CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred             ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC-CceEEEEEecCCEEEEEEcccCCCCc
Confidence            76   78899999996  5699999999999999999999988883     44 789999999999999999999998  


Q ss_pred             --EEEEEcCC
Q 019405          325 --LRFWDIKT  332 (341)
Q Consensus       325 --v~iwd~~~  332 (341)
                        |.+||+..
T Consensus       433 ~~l~v~df~~  442 (445)
T 2ovr_B          433 TKLLVLDFDV  442 (445)
T ss_dssp             CEEEEEECCC
T ss_pred             cEEEEEECCC
Confidence              99999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.2e-35  Score=283.69  Aligned_cols=297  Identities=13%  Similarity=0.126  Sum_probs=229.0

Q ss_pred             CCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        13 ~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ....+++++.||.+++|++...     +....+.+|...+.+++|++++.    +|++++.||.|++||+.+++....+.
T Consensus       712 ~~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~sp~~~----~l~s~s~dg~v~vwd~~~~~~~~~~~  782 (1249)
T 3sfz_A          712 NHLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVNHCRFSPDDE----LLASCSADGTLRLWDVRSANERKSIN  782 (1249)
T ss_dssp             SCCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEEEEEECSSTT----EEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred             CceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEEEEEEecCCC----EEEEEECCCeEEEEeCCCCcccceec
Confidence            4456788999999999999876     56677888999999999988666    89999999999999998876655443


Q ss_pred             ccC-----------------CCCCC------------------------------CCCCceeeEeeeeccccccccccce
Q 019405           93 NAG-----------------DSGAQ------------------------------PEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        93 ~~~-----------------~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      ...                 ...++                              .+...+.++.+.+...        .
T Consensus       783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--------~  854 (1249)
T 3sfz_A          783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--------L  854 (1249)
T ss_dssp             CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT--------E
T ss_pred             ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC--------E
Confidence            211                 11111                              2233444444444433        8


Q ss_pred             eEEEcccceeEEEEeeeccc-----------------------ccccCCceEEEEEeec---------------------
Q 019405          126 LLTCTTKGKASMRSIEVTKV-----------------------SAESSCSTVKSWNVCA---------------------  161 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~-----------------------~~~~~~~~v~~~~~~~---------------------  161 (341)
                      +++++.+|.+.+|++.....                       .+++.++.+++|+...                     
T Consensus       855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            88899999999998653321                       2456788888887532                     


Q ss_pred             --------------------------CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee
Q 019405          162 --------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (341)
Q Consensus       162 --------------------------~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  215 (341)
                                                ...+.+++++|+++++++|+.+|.|++||+.+++....+..+.         ..
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~---------~~ 1005 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK---------KA 1005 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS---------SC
T ss_pred             cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC---------Cc
Confidence                                      2458899999999999999999999999999887777666543         34


Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEc----------------------------------------CCCCceeEEEE
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDT----------------------------------------SAQRRPVMSFD  255 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~----------------------------------------~~~~~~~~~~~  255 (341)
                      |.+++|  +|++++|++++.|+.|++||+                                        .+++ .+..+.
T Consensus      1006 v~~l~~--s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~ 1082 (1249)
T 3sfz_A         1006 VRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR-IERDFT 1082 (1249)
T ss_dssp             CCCEEE--CSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-CCEEEE
T ss_pred             eEEEEE--CCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-eeEEEc
Confidence            555666  555555555555555555554                                        4433 255677


Q ss_pred             ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       256 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      .|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+| ...|++++|+|++++|++++.||.|++||+.++++
T Consensus      1083 ~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred             ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            78889999999999999999999999999999999999999998 89999999999999999999999999999999987


Q ss_pred             eeee
Q 019405          336 LSAV  339 (341)
Q Consensus       336 ~~~~  339 (341)
                      +..+
T Consensus      1162 ~~~~ 1165 (1249)
T 3sfz_A         1162 LHSC 1165 (1249)
T ss_dssp             CCCC
T ss_pred             EEEe
Confidence            7654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-33  Score=264.34  Aligned_cols=278  Identities=13%  Similarity=0.101  Sum_probs=233.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.+|.|++|++...     +.+..+..|...+.+++|++++.    +|++|+.||.|+|||+.+++.+..+.. 
T Consensus        26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~-   95 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTETPVRAGKFIARKN----WIIVGSDDFRIRVFNYNTGEKVVDFEA-   95 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEEEGGGT----EEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEECCCC-----ceEEEEecCCCcEEEEEEeCCCC----EEEEEeCCCeEEEEECCCCcEEEEEec-
Confidence            34777888999999998775     66778888999999999999877    899999999999999999988888776 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-C
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~  173 (341)
                             +.+.+.++.|.+...        .+++++.||.+.+|++....       .....+. .+...|.+++|+| +
T Consensus        96 -------~~~~v~~~~~s~~~~--------~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           96 -------HPDYIRSIAVHPTKP--------YVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD  152 (814)
T ss_dssp             -------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred             -------CCCCEEEEEEeCCCC--------EEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence                   457788888877666        89999999999999986431       1233333 4678899999999 8


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      ++.+++++.||.|++||+.+++....+..+.        ...+.+++|.|.+++.+|++++.|+.|++||+++++ ++..
T Consensus       153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~  223 (814)
T 3mkq_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT  223 (814)
T ss_dssp             EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence            8999999999999999998877766665442        245889999433499999999999999999999866 4888


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE-EEEEeCCCcEEEEEcCC
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIKT  332 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~v~iwd~~~  332 (341)
                      +..|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. +++++.|+.+.+|++..
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            8889999999999999999999999999999999999999999987 889999999999873 35555677899999876


Q ss_pred             Cce
Q 019405          333 RQL  335 (341)
Q Consensus       333 ~~~  335 (341)
                      +..
T Consensus       303 ~~~  305 (814)
T 3mkq_A          303 DEP  305 (814)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-35  Score=258.78  Aligned_cols=244  Identities=12%  Similarity=0.084  Sum_probs=179.3

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchh----eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~  141 (341)
                      ++|++++.|++|+||++.+++...    .+..        +.+.+..+.|.+.....  .....|++++.||++++|++.
T Consensus       174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~--------~~~~V~~v~wsp~~~~~--~~~~~LAs~s~DgtvrlWd~~  243 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH--------SFGEVWDLKWHEGCHAP--HLVGCLSFVSQEGTINFLEII  243 (524)
T ss_dssp             --------CEEEEEEEEETTTCCEEEEEEEEE--------CCCSEEEEEECSSCCCS--SSSCEEEEEETTSCEEEEECC
T ss_pred             hhhccCCCCceEEEEEccCCCCCceEEEEEEe--------cCCcEEEEEECCCCCCC--CCCceEEEEecCCeEEEEEcC
Confidence            345556688999999998766432    1222        34668888887641100  011289999999999999997


Q ss_pred             ecccccc---cCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeee
Q 019405          142 VTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFT  217 (341)
Q Consensus       142 ~~~~~~~---~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~  217 (341)
                      .......   ........+. .+...|.+++|+++ ..|++|+.||+|++||++++. +...+..|         ...|.
T Consensus       244 ~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H---------~~~V~  312 (524)
T 2j04_B          244 DNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVH---------DSYIL  312 (524)
T ss_dssp             CCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECS---------SSCEE
T ss_pred             CCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecc---------cccEE
Confidence            5432100   0011122332 35678999999986 589999999999999998763 23334443         36699


Q ss_pred             EEEEEecCCC-CEEEEEeCCCeEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405          218 SAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (341)
Q Consensus       218 ~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  294 (341)
                      ++++..++++ .+|++++.|++|++||+++++. ...+.+|..  .|.+++|+|+++.+++++.|+.|++||+++++++.
T Consensus       313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~  391 (524)
T 2j04_B          313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH  391 (524)
T ss_dssp             EEEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred             EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence            9942117777 8999999999999999998654 556666653  58899999999999999999999999999999888


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       295 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .+.+| .+.|++++|+|++++|++|+.|++|++||+..
T Consensus       392 ~l~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          392 PLVSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             eeecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            88888 99999999999999999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-34  Score=251.24  Aligned_cols=261  Identities=13%  Similarity=0.133  Sum_probs=200.1

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .....|+..|++++|+|...   .+||+|+.||+|+|||+.+++....+...      +|.+.|.++.|.+.+..     
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~---~~lasGs~dg~i~lWd~~~~~~~~~~~~~------gH~~~V~~l~f~p~~~~-----  178 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHP---STVAVGSKGGDIMLWNFGIKDKPTFIKGI------GAGGSITGLKFNPLNTN-----  178 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCT---TCEEEEETTSCEEEECSSCCSCCEEECCC------SSSCCCCEEEECSSCTT-----
T ss_pred             ccCCCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEEECCCCCceeEEEcc------CCCCCEEEEEEeCCCCC-----
Confidence            34455788899999987432   37999999999999999877655444432      46688999998764432     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                        .|++++.||++++|+++..         .+..+...+  ...+.+++|+|++++|++|+.||.|++||++. +.+..+
T Consensus       179 --~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          179 --QFYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             --EEEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             --EEEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence              8999999999999998532         333333222  24578899999999999999999999999864 445555


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~  277 (341)
                      ..|         ...|.+++|  +|++. +|++++.|+.|++||+++.+.  .+....+|..+|++++|+|++.+|++++
T Consensus       247 ~~h---------~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          247 RMH---------KKKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             BCC---------SSCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ecc---------cceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            543         366999999  77765 788999999999999987543  1233456899999999999999999999


Q ss_pred             CCCCEEEEECCCCeEEeEEecccc-----CceeEEEecCCCCEEEEEe------------CCCcEEEEEcCCCceeeeec
Q 019405          278 GSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCG------------LDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~  340 (341)
                      .||.|++||+.+++....+..|..     ..+....|+|++..+++++            .++.|++||..+++++..++
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            999999999999988777765511     1234567777777666654            34579999999999887764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-34  Score=245.34  Aligned_cols=265  Identities=12%  Similarity=0.066  Sum_probs=212.7

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      ..+|..+|.+++|+++......++++++.++.|+|||+.+++.+..+..+...   .+...+.++.|.+....    ...
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~----~~~   86 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSNT----SHP   86 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTTT----CCE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCCC----CCC
Confidence            34699999999999864333346777777889999999988887777765322   25577888888776320    122


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      .+++++.||.+.+|++....        .+..+. .+...|.+++|+| ++++|++++.|+.|++||+++++....+...
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             EEEEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            89999999999999986433        444444 4678999999999 8999999999999999999999888877321


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce---------------------------eEEEEe
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---------------------------VMSFDF  256 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------~~~~~~  256 (341)
                      ..      |...|.+++|  +|++++|++++.|+.|++||+++++..                           ......
T Consensus       158 ~~------~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T 3k26_A          158 EG------HRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI  229 (366)
T ss_dssp             TS------CSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred             cc------ccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence            11      3366999999  889999999999999999999875320                           112223


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe--------------EEeEEeccccCceeEEEecCC--CCEEEEEe
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASCG  320 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~  320 (341)
                      |...|.+++|+  +.+|++++.|+.|++||+++++              .+..+..| ...|++++|+|+  +++|++++
T Consensus       230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEEC
T ss_pred             CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEEe
Confidence            88999999998  6699999999999999998763              47788887 889999999999  99999999


Q ss_pred             CCCcEEEEEcCCCcee
Q 019405          321 LDSYLRFWDIKTRQLL  336 (341)
Q Consensus       321 ~dg~v~iwd~~~~~~~  336 (341)
                      .||.|++||+.+++++
T Consensus       307 ~dg~i~vwd~~~~~~~  322 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPH  322 (366)
T ss_dssp             TTSCEEEEECCSSSGG
T ss_pred             cCCcEEEEECCCCCCc
Confidence            9999999999988654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.8e-33  Score=242.55  Aligned_cols=257  Identities=14%  Similarity=0.142  Sum_probs=205.3

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC----------CcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (341)
                      .-.|...+.+++|+++.   +.+|++++.||.|+||++.+          .+.+..+..        |...+.++.|.+.
T Consensus       124 ~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~  192 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNPN  192 (430)
T ss_dssp             EEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECTT
T ss_pred             EEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCCC
Confidence            34688999999999862   23799999999999999976          344444444        4567888888665


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCCCeEEEEECCC
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK  193 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~  193 (341)
                      ...       .|++++.||.+.+|++........ .......+. .+...|.+++|+| ++.++++++.|+.|++||+++
T Consensus       193 ~~~-------~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          193 LNG-------YLLSASDDHTICLWDINATPKEHR-VIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             STT-------EEEEECTTSCEEEEETTSCCBGGG-EEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCC-------eEEEEeCCCeEEEEeCCCCCCCCc-eeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            442       899999999999999875321100 000123332 4677899999999 678999999999999999997


Q ss_pred             C---ceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405          194 C---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD  269 (341)
Q Consensus       194 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (341)
                      +   +....+..+         ...|++++|  +|++. +|++++.||.|++||++....++..+..|...|.+++|+|+
T Consensus       264 ~~~~~~~~~~~~~---------~~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          264 NNTSKPSHTVDAH---------TAEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  332 (430)
T ss_dssp             SCSSSCSEEEECC---------SSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred             CCCCcceeEeecC---------CCCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence            6   344444433         366999999  78776 68899999999999999866678899999999999999999


Q ss_pred             Cc-eEEEEeCCCCEEEEECCC--------------CeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCC
Q 019405          270 SF-NIYIGNGSGDLASVDIRT--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       270 ~~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~  333 (341)
                      +. +|++++.|+.|++||+..              .+++..+.+| ...|++++|+|+++ +|++++.||.|++|++..+
T Consensus       333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            85 689999999999999986              3667777787 88999999999999 8999999999999999754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2e-33  Score=228.81  Aligned_cols=261  Identities=10%  Similarity=0.006  Sum_probs=178.9

Q ss_pred             eecCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCC-----------------------
Q 019405            7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-----------------------   63 (341)
Q Consensus         7 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~-----------------------   63 (341)
                      -|.++|-.+-+++++ ...|++|+..+.  -.|+.+++|..|+.+|..+++.+|...                       
T Consensus        47 ~~~~~~~~~~~~~~~-~~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~  123 (356)
T 2w18_A           47 WERAGCKEPCIITAC-EDVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDD  123 (356)
T ss_dssp             EC----CEEEEEEEE-SSEEEEEEESSS--SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred             eccCCCCccEEEEec-cceEEEcccCCC--ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCc
Confidence            356677666566654 457899999886  567888999888888777777664441                       


Q ss_pred             --CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc---ccceeEEE
Q 019405           64 --NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMR  138 (341)
Q Consensus        64 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~g~~~i~  138 (341)
                        .++++++++.  .+++|++.++                                       .++..+   .|+.+++|
T Consensus       124 ~~~~~~l~s~g~--~~~v~~l~~g---------------------------------------~lv~ss~~g~d~~V~~~  162 (356)
T 2w18_A          124 ESEKQVLLKSGN--IKAVLGLTKR---------------------------------------RLVSSSGTLSDQQVEVM  162 (356)
T ss_dssp             --CCEEEEEEEE--EEEEEEETTT---------------------------------------EEEEEESSSTTCEEEEE
T ss_pred             cccccEEEeCCC--eEEEEecCCC---------------------------------------cEEEecccCCCCcEEEE
Confidence              1333333331  1333332111                                       333332   47778888


Q ss_pred             EeeecccccccCCceEEEEEeecCCceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee
Q 019405          139 SIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (341)
Q Consensus       139 ~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  215 (341)
                      ++..        ++....-...+...+..++|++   ++.+|++++.|++|++||+++++.+..+..+...      ...
T Consensus       163 ~~s~--------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~  228 (356)
T 2w18_A          163 TFAE--------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QAS  228 (356)
T ss_dssp             EECT--------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CC
T ss_pred             EECC--------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eee
Confidence            7742        2222222223566777888888   7899999999999999999999999998754321      134


Q ss_pred             eeEEEEEecCCCCEE------------EEEeCCCeEEEEEcCCCCceeEEE-----EecCCCeEEEEEcCCCceEEEEeC
Q 019405          216 FTSAAFLSIDDHRKF------------VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       216 v~~~~~~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      +.+++|  +|++.++            ++|+.|++|++||..+++. +..+     .+|...+.+..+  ++.++++|+.
T Consensus       229 v~~vaf--SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~  303 (356)
T 2w18_A          229 VCHKAY--SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILT  303 (356)
T ss_dssp             CEEEEE--EETTEEEEEEC------------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEE--ETTEEEEEET
T ss_pred             eEEEEE--CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEcccc--CCCEEEEEcC
Confidence            777889  7788776            5688899999999998764 4444     245544444444  3778999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      |++|+|||+.+++++.++.+|+...+..++|+|+|++|++|+.|++|+|||+
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999999999999883334456899999999999999999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-33  Score=240.91  Aligned_cols=262  Identities=11%  Similarity=0.063  Sum_probs=208.0

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC----CCCcc------hheeeccCCC--CCCCCCCceeeEeeeec
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP----LNGDL------RVAISNAGDS--GAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~----~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~  114 (341)
                      .|...+.+++|++++.   .+|++|+.||.|++|++    .+++.      ...+......  ....+.+.+.++.+.+.
T Consensus        43 ~~~~~v~~~~~s~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDE---SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EECSCCSEEEECSSCT---TEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             eccCceEEEEECCCCC---cEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            4668999999887654   27999999999999999    88773      3333221000  01124568888888776


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                      ..        .|++++.+|.+.+|+..         ...+..+. .+...|.+++|+|++++|++++.|+.|++||+.++
T Consensus       120 ~~--------~l~~~~~dg~i~i~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          120 GN--------SIVTGVENGELRLWNKT---------GALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             SS--------EEEEEETTSCEEEEETT---------SCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             CC--------EEEEEeCCCeEEEEeCC---------CCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence            55        89999999999999821         22344443 46788999999999999999999999999999988


Q ss_pred             ceeeecCCCCCC-----------------------------------------------ccCccCCeeeeEEEEEecCCC
Q 019405          195 EKIWTAKPPPKN-----------------------------------------------SLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       195 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~v~~~~~~~~~~~  227 (341)
                      +....+..+...                                               .....|...|.+++|  +|++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~  259 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF--NDTN  259 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE--ETTT
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE--CCCC
Confidence            877665544321                                               001135677999999  8899


Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE
Q 019405          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~  307 (341)
                      ++|++++.|+.|++||+++++. +..+..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+..| ...|.++
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~  336 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAG  336 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEE
Confidence            9999999999999999998664 78888899999999999999 9999999999999999999999999987 8899999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +|+|++++|++++.||.|++||+++++
T Consensus       337 ~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          337 RISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            999999999999999999999999887

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.1e-35  Score=250.07  Aligned_cols=245  Identities=10%  Similarity=0.049  Sum_probs=192.2

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC--cchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +..+|.+++|++++.    +|++|+.|+.|+|||+.++  +.+..+..        |...+.++.+.+...        .
T Consensus        10 ~~~~v~~~~~s~~g~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~s~~~~--------~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT----EFVTTTATNQVELYEQDGNGWKHARTFSD--------HDKIVTCVDWAPKSN--------R   69 (377)
T ss_dssp             CSSCCSCCEECSSSS----EEECCCSSSCBCEEEEETTEEEECCCBCC--------CSSCEEEEEECTTTC--------C
T ss_pred             CCCcEEEEEECCCCC----EEEEecCCCEEEEEEccCCceEEEEEEec--------CCceEEEEEEeCCCC--------E
Confidence            667899999998766    8999999999999999887  56666654        557888888877655        8


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce---eeecCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP  202 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~  202 (341)
                      |++++.|+.+++|++.....     ...+... ..+...|.+++|+|++++|++++.|+.|++||+++++.   ...+..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGT-----WKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR  143 (377)
T ss_dssp             EEEEETTSSEEEC------C-----CCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred             EEEEeCCCeEEEEEcCCCCc-----eeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence            99999999999999875430     1122222 24678899999999999999999999999999998763   444443


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC-----------------CceeEEEEecCCCeEEEE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAVA  265 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~  265 (341)
                      .        |...|.+++|  +|++++|++++.|+.|++||++..                 ..++..+ .|...|.+++
T Consensus       144 ~--------h~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          144 P--------LRSTILSLDW--HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             S--------CCSCEEEEEE--CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             c--------cCCCeEEEEE--cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence            1        3366999999  889999999999999999998631                 1234445 7899999999


Q ss_pred             EcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          266 EEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      |+|++++|++++.|+.|++||+++++.    +..+.+| ...|.+++|+|++++|++++.|+.+ +|+..
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999999999999999999877    7888888 8899999999999999998776655 66655

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=243.97  Aligned_cols=294  Identities=13%  Similarity=0.093  Sum_probs=214.4

Q ss_pred             ceeeeecCCCCeEEEEEecCc------cCccceeeeccCCC------------CCceeEEEeccCCCCCceEEEEccCCe
Q 019405           15 LRALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPH------------SSNCVLAASIDDSQNDPLLAVARKNGL   76 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~~~l~~~~~dg~   76 (341)
                      -.+++++.||.|++|++....      .+.+++...+.+|.            ..|..++|+++..+  .+|++++.|++
T Consensus        41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~--~~l~s~s~d~~  118 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA--AQFLLSTNDKT  118 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS--SEEEEEECSSC
T ss_pred             CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc--ceEEEeCCCCe
Confidence            457888999999999998752      12333566788887            88999999987631  37999999999


Q ss_pred             EEEeeCCCCcchheeeccCC--------------------------------CCCCCCCCceeeEeeeeccccccccccc
Q 019405           77 TDILNPLNGDLRVAISNAGD--------------------------------SGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        77 i~iw~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      |++||+.+++..........                                .....|...+.++.+.+...        
T Consensus       119 i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------  190 (447)
T 3dw8_B          119 IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE--------  190 (447)
T ss_dssp             EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS--------
T ss_pred             EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC--------
Confidence            99999976443211000000                                00124667788888877555        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEE------EeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCce-
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW------NVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEK-  196 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~-  196 (341)
                      .++++ .|+.+++|++.....       .+..+      ...+...|.+++|+|++ ++|++++.|+.|++||+++++. 
T Consensus       191 ~l~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          191 TYLSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EEEEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEEEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            78888 799999999863221       22322      12356789999999998 9999999999999999998776 


Q ss_pred             ---eeecCCCCCC---ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC----------
Q 019405          197 ---IWTAKPPPKN---SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP----------  260 (341)
Q Consensus       197 ---~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------  260 (341)
                         ...+..+...   .....|...|.+++|  +|++.+|++++. +.|++||++....++..+..|...          
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKF--SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEE--CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEE--CCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence               5555554310   000001126999999  899999999998 999999999734458888877532          


Q ss_pred             -----eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--------------------------------ccCc
Q 019405          261 -----IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CSGS  303 (341)
Q Consensus       261 -----v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--------------------------------~~~~  303 (341)
                           +..++|+|++++|++|+.||.|++||+.+++.+. +..+                                ....
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK  418 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence                 2349999999999999999999999999887753 2221                                1356


Q ss_pred             eeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          304 IRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      |..++|+|++++||+++.++ +++|.-+
T Consensus       419 i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          419 ILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eeEEEECCCCCEEEEEecce-eeeeccc
Confidence            89999999999999998875 8888654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=239.36  Aligned_cols=264  Identities=11%  Similarity=0.082  Sum_probs=204.9

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-Ccch-heeeccCCCCCCCCCCceeeEeeeecccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (341)
                      +.+..+.+|...|.+++|+++.. +|++|++|+.||.|+|||+.+ ++.+ ..+..        +...+.++.+.+... 
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~-   99 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDGS-   99 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTSS-
T ss_pred             ceeEeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCCC-
Confidence            45667888999999999998741 134899999999999999987 4444 44444        457888888877655 


Q ss_pred             ccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe--cCCCCEEEEeeCCCeEEEEECCCCc
Q 019405          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCE  195 (341)
Q Consensus       118 ~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~  195 (341)
                             .+++++.||.+.+|++....        .+.  ...+...|.+++|  ++++++|++++.|+.|++||+++++
T Consensus       100 -------~l~s~~~dg~v~iwd~~~~~--------~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A          100 -------KVFTASCDKTAKMWDLSSNQ--------AIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             -------EEEEEETTSEEEEEETTTTE--------EEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             -------EEEEEcCCCcEEEEEcCCCC--------cee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence                   89999999999999986433        233  2347789999999  8999999999999999999999887


Q ss_pred             eeeecCCCCCC--------------------------------ccCccCCeeeeEEEEEecCCC--CEEEEEeCCCeEEE
Q 019405          196 KIWTAKPPPKN--------------------------------SLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRL  241 (341)
Q Consensus       196 ~~~~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~~i~i  241 (341)
                      .+..+..+...                                .........+.++.+.+....  ..+++++.|+.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            66655543210                                000011123444555222221  23999999999999


Q ss_pred             EEcCCCC--ceeEEEEecCC------------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEE
Q 019405          242 YDTSAQR--RPVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (341)
Q Consensus       242 wd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~  307 (341)
                      ||++...  ..+..+..|..            +|++++|+|++++|++|+.||.|++||+++++++..+..| ..+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~  321 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISAC  321 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEE
Confidence            9999753  34667777765            7999999999999999999999999999999999999988 8999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcC
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +|+|++++|++++.|+..+.|++.
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EECCCCCeEEEEeccccccccccc
Confidence            999999999999998865555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.6e-33  Score=233.70  Aligned_cols=276  Identities=12%  Similarity=0.049  Sum_probs=214.3

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCc-eEEEEccCCeEEEeeC-CCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~l~~~~~dg~i~iw~~-~~~~~~~~~~   92 (341)
                      -.+++++.||.|++|++......  .....+..|...+.+++|+++    ++ +|++|+.||.|++||+ .+++. ..+.
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDN----TDLQIYVGTVQGEILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEES----SSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred             CEEEEEcCCCeEEEEEeCCCCcc--ccceeeeecCCceEEEEECCC----CCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence            34788889999999999876211  123344478899999999875    45 6999999999999999 87654 3333


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-CCceEEEEEeecCCceEEEEec
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ..      .+...+.++.+.+ ..        .+++++.|+.+.+|++......... ....+..  ..+...+.+++|+
T Consensus        97 ~~------~~~~~v~~l~~~~-~~--------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  159 (342)
T 1yfq_A           97 NN------EANLGICRICKYG-DD--------KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTN  159 (342)
T ss_dssp             SC------CCCSCEEEEEEET-TT--------EEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEEC
T ss_pred             cc------CCCCceEEEEeCC-CC--------EEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEec
Confidence            20      1557888888877 55        9999999999999998751100000 0001112  2256789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCC-Cceee--ecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCC
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDK-CEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~-~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      |++  +++++.|+.|++||+++ +....  ....         +...+.+++|  +| +++++++++.||.|++|+++..
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~i~~i~~--~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG---------LKYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECS---------CSSCEEEEEE--CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecC---------CCCceeEEEE--CCCCCCEEEEEecCCcEEEEEEcCC
Confidence            877  89999999999999987 54321  1111         2356999999  88 9999999999999999999876


Q ss_pred             -----CceeEEEEecCC---------CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       248 -----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                           ..+...+..|..         .|.+++|+|++++|++++.||.|++||+.+++++..+.+||..+|.+++  |++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~  304 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD  304 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence                 245788888865         9999999999999999999999999999999999999987688999999  999


Q ss_pred             CEEEEEeCCCc-EEEEE
Q 019405          314 PIIASCGLDSY-LRFWD  329 (341)
Q Consensus       314 ~~l~s~~~dg~-v~iwd  329 (341)
                      ++|++++.||. .+.|.
T Consensus       305 ~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          305 NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEEECTHHHHCSS
T ss_pred             CeEEEEecCCccccccc
Confidence            99999999998 44443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-34  Score=239.56  Aligned_cols=238  Identities=8%  Similarity=0.055  Sum_probs=183.4

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      ++.+|++|+.||+|++||+.+++.+..+..          ..+.++.+.+           .+++++.|+.+++|+....
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~~~-----------~~~s~s~D~~i~~w~~~~~  105 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGEHP-----------AIISRGPCNRLLLLYPGNQ  105 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCCCC-----------SEEEECSTTEEEEEETTTE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeeeCC-----------ceEEecCCCeEEEEEccCc
Confidence            345899999999999999999888777653          2232232211           3889999999999986532


Q ss_pred             cccccc-CCceEEEEEeecCCceEEEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEE
Q 019405          144 KVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (341)
Q Consensus       144 ~~~~~~-~~~~v~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (341)
                      ...... ....++.....+...|.+++++|  +++++++++.|+.|++||+++++.......+.        ...+.+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~~~  177 (343)
T 3lrv_A          106 ITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSSGV  177 (343)
T ss_dssp             EEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCEEE
T ss_pred             eEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEEEE
Confidence            111111 11235555555667899999999  99999999999999999999988865554332        24589999


Q ss_pred             EEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec-
Q 019405          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-  298 (341)
Q Consensus       221 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-  298 (341)
                      |  +|++.+|++|+.|+.|++||+++++.....+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+.. 
T Consensus       178 ~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~  254 (343)
T 3lrv_A          178 L--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY  254 (343)
T ss_dssp             E--CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred             E--CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence            9  899999999999999999999998763377887 999999999999999999999 55999999998877655443 


Q ss_pred             --cccCcee--EEEecCCCCEEEEEeC-CCcEEEEEcCCCc
Q 019405          299 --KCSGSIR--SIARHPTLPIIASCGL-DSYLRFWDIKTRQ  334 (341)
Q Consensus       299 --~~~~~i~--~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~  334 (341)
                        | ...+.  +++|+|++++|++++. |+.|++|++.++.
T Consensus       255 ~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          255 TIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             BC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence              2 33444  6999999999999998 9999999996654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-34  Score=263.70  Aligned_cols=253  Identities=12%  Similarity=0.078  Sum_probs=201.8

Q ss_pred             eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeec--cccc
Q 019405           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKR--QREE  118 (341)
Q Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  118 (341)
                      ..+.+|.+.|++++|++++.    +|++|+.||.|+|||+.  +++....+..        |.+.+.++.+.+.  ..  
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~--   68 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGT--   68 (753)
T ss_dssp             -----CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCS--
T ss_pred             eecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCC--
Confidence            35678999999999987765    89999999999999997  3445555554        5578989988765  33  


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEEEeeCCCeEEEEECCCCce
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEK  196 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~  196 (341)
                            .+++++.||.+++|++.....      ..+... ..+...|.+++|+|+  ++++++++.||.|++||++++..
T Consensus        69 ------~l~s~s~Dg~I~vwd~~~~~~------~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~  135 (753)
T 3jro_A           69 ------ILASCSYDGKVLIWKEENGRW------SQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  135 (753)
T ss_dssp             ------EEEEEETTSCEEEEEEETTEE------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred             ------EEEEEeCCCeEEEEECCCCcc------cccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence                  899999999999999875321      022222 346789999999999  99999999999999999987633


Q ss_pred             e--eecCCCCCCccCccCCeeeeEEEEEecC-------------CCCEEEEEeCCCeEEEEEcCCCC---ceeEEEEecC
Q 019405          197 I--WTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDHQVRLYDTSAQR---RPVMSFDFRE  258 (341)
Q Consensus       197 ~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~  258 (341)
                      .  ..+..         |...|.+++|  +|             ++.++++++.||.|++||++++.   .+...+..|.
T Consensus       136 ~~~~~~~~---------~~~~v~~l~~--~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~  204 (753)
T 3jro_A          136 TSPIIIDA---------HAIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (753)
T ss_dssp             CCCEEEEC---------CSSCEEEEEE--CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             cceeEeec---------CCCceEEEEe--cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence            2  22222         3466999999  66             58899999999999999998764   3356677899


Q ss_pred             CCeEEEEEcCC---CceEEEEeCCCCEEEEECCCCe-----EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          259 TPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       259 ~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      .+|++++|+|+   +.+|++|+.||.|++||+++++     .+.....| ...|++++|+|++++|++++.||.|++||+
T Consensus       205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            99999999999   8999999999999999998864     23333345 789999999999999999999999999999


Q ss_pred             CCCc
Q 019405          331 KTRQ  334 (341)
Q Consensus       331 ~~~~  334 (341)
                      .++.
T Consensus       284 ~~~~  287 (753)
T 3jro_A          284 NLEG  287 (753)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.8e-32  Score=238.04  Aligned_cols=257  Identities=12%  Similarity=0.162  Sum_probs=203.7

Q ss_pred             eeeccCCCCCc-eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           42 VERWGDPHSSN-CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        42 ~~~~~~~~~~~-~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      ...+.+|...+ .++.+  ++    ++|++|+.||+|++||+.+++.+..+..        |.+.+.++.+.+ +.    
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~----~~l~sgs~dg~i~vwd~~~~~~~~~~~~--------h~~~V~~l~~~~-~~----  174 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--ED----NYVITGADDKMIRVYDSINKKFLLQLSG--------HDGGVWALKYAH-GG----  174 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ET----TEEEEEETTSCEEEEETTTTEEEEEECC--------CSSCEEEEEECS-TT----
T ss_pred             eEEEcCCCCCcEEEEEE--CC----CEEEEEcCCCcEEEEECCCCcEEEEEeC--------CCcCEEEEEEcC-CC----
Confidence            34677787775 44444  33    3899999999999999999998888776        457788888743 33    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec--CCCCEEEEeeCCCeEEEEECCCCceee
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~  198 (341)
                          .+++++.||.+++|++....        .+..+. .+...|.+++++  ++++++++++.|+.|++||++++....
T Consensus       175 ----~l~s~s~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          175 ----ILVSGSTDRTVRVWDIKKGC--------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             ----EEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             ----EEEEEeCCCCEEEEECCCCc--------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence                89999999999999986433        444444 367899999998  578999999999999999998765432


Q ss_pred             ecCCCCC--------------CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405          199 TAKPPPK--------------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV  264 (341)
Q Consensus       199 ~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~  264 (341)
                      .......              ......|...+.++.    ++++++++++.|+.|++||+++++ ++..+.+|...|.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~  316 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYST  316 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEE
Confidence            2111100              000112334565553    478899999999999999999866 488888999999999


Q ss_pred             EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      +|+|++++|++|+.||.|++||+++++++..+.+| ...|.+++|+  +.+|++++.||.|++||+.+++....
T Consensus       317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  387 (464)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence            99999999999999999999999999999999998 8999999997  57999999999999999998876554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.4e-33  Score=233.05  Aligned_cols=251  Identities=12%  Similarity=0.059  Sum_probs=203.1

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc---hheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      ..+|...+.+++|++++.    +|++++.||.|+||++.+++.   ...+..        +...+.++.+.+....    
T Consensus         7 ~~~h~~~v~~~~~s~~~~----~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~----   70 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLR--------YKHPLLCCNFIDNTDL----   70 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEE--------CSSCEEEEEEEESSSE----
T ss_pred             ccCCCCcEEEEEEcCCCC----EEEEEcCCCeEEEEEeCCCCccccceeeee--------cCCceEEEEECCCCCc----
Confidence            456899999999999776    899999999999999987761   222223        4577888887654220    


Q ss_pred             ccceeEEEcccceeEEEEe-eecccccccCCceEEEEEe-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC------
Q 019405          122 RSRTLLTCTTKGKASMRSI-EVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK------  193 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~-~~~~~~~~~~~~~v~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~------  193 (341)
                         .+++++.+|.+.+|++ ....         ...+.. .+...|.+++|+| ++++++++.|+.|++||+++      
T Consensus        71 ---~l~~~~~dg~i~~wd~~~~~~---------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           71 ---QIYVGTVQGEILKVDLIGSPS---------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             ---EEEEEETTSCEEEECSSSSSS---------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             ---EEEEEcCCCeEEEEEeccCCc---------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence               5889999999999998 5432         222221 1678899999999 99999999999999999986      


Q ss_pred             ---CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC-CCce-eEEEEecCCCeEEEEEcC
Q 019405          194 ---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP-VMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       194 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~  268 (341)
                         ++.+..+.          +...+.+++|  ++++  +++++.|+.|++||+++ .... ......|...+.+++|+|
T Consensus       138 ~~~~~~~~~~~----------~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          138 AVKNLNSNNTK----------VKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             EEEESCSSSSS----------SCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred             cccCCeeeEEe----------eCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECC
Confidence               55444433          3366999999  6665  99999999999999998 5542 334445788999999999


Q ss_pred             -CCceEEEEeCCCCEEEEECCCC------eEEeEEeccccC---------ceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          269 -DSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       269 -~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~~~~~---------~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                       +++++++++.||.|++|+++..      +.+..+..| ..         .|.+++|+|++++|++++.||.|++||+.+
T Consensus       204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence             9999999999999999999877      777888877 44         999999999999999999999999999999


Q ss_pred             Cceeeee
Q 019405          333 RQLLSAV  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      ++++.++
T Consensus       283 ~~~~~~~  289 (342)
T 1yfq_A          283 RKKIKNF  289 (342)
T ss_dssp             TEEEEEC
T ss_pred             HhHhhhh
Confidence            9988765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=237.24  Aligned_cols=260  Identities=13%  Similarity=0.124  Sum_probs=202.6

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      .+.+|...+.+++|++++.   .++++|+.   ||.|+|||+.+++.......       .+...+.++.+.+...    
T Consensus        13 ~~~~h~~~v~~~~~~p~~~---~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~----   78 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSA---KFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSL----   78 (357)
T ss_dssp             EEEECSSCEEEEEECTTSS---EEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCT----
T ss_pred             hccCCCCceEEEEEcCCCc---eEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCC----
Confidence            4566999999999998775   24566776   99999999998876544432       2447788888876630    


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE------ecCCCCEEEEeeCCCeEEEEECCCC
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDKC  194 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~v~i~d~~~~  194 (341)
                       ....+++++.||.+.+|++....       ..+..+. .+...|.+++      |+|++++|++++.|+.|++||++++
T Consensus        79 -~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           79 -QQRYLATGDFGGNLHIWNLEAPE-------MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             -TTCCEEEEETTSCEEEECTTSCS-------SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred             -CCceEEEecCCCeEEEEeCCCCC-------ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence             01189999999999999986433       1334444 4677899995      5789999999999999999999987


Q ss_pred             c-eeeecCCCCCCccCccCCeeeeEEEEEe--cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcC---
Q 019405          195 E-KIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP---  268 (341)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---  268 (341)
                      + ....+..+...     ....+.+++|.+  ++++++|++++.|+.|++||+++++.  .....|...|.+++|+|   
T Consensus       150 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          150 DDPVANMEPVQGE-----NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             SSCSEEECCCTTS-----CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCSSS
T ss_pred             CCcceeccccCCC-----CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCCCC
Confidence            6 56666554322     123588888411  68999999999999999999998653  44566889999999999   


Q ss_pred             CCceEEEEeCCCCEEEEECCCCeEEeEEe-----ccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCCc
Q 019405          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       269 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ++.+|++++.||.|++||+++++.+..+.     +| ...|++++|+|+++ +|++++.||.|++||++++.
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            89999999999999999998877655554     77 89999999999998 89999999999999998653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.3e-32  Score=245.73  Aligned_cols=275  Identities=13%  Similarity=0.057  Sum_probs=223.5

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCC-ceeEEEec--cCCCCCceEEEEccCCeEEEeeCCCC--------cchhe
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASI--DDSQNDPLLAVARKNGLTDILNPLNG--------DLRVA   90 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~s~--~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~   90 (341)
                      .+|.+.+|++.+.. ...+....+.+|... +.+++|++  ++.    +|++|+.||.|+|||+.++        +....
T Consensus        37 ~~~~v~v~~~~~~~-~~~~~~~~~~~h~~~~v~~~~~sp~~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~  111 (615)
T 1pgu_A           37 CGKSAFVRCLDDGD-SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ----YLCSGDESGKVIVWGWTFDKESNSVEVNVKSE  111 (615)
T ss_dssp             ETTEEEEEECCSSC-CSSCSEEEECTTTTSCEEEEEECSSTTCC----EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             cCCeEEEEECCCCC-CccccceEEecCCCceEEEEEECcCCCCC----EEEEecCCCEEEEEeCCCCcccccccccccch
Confidence            36778899887531 111345578889999 99999998  665    8999999999999999755        44444


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      +..        +...+.++.+.+...        .+++++.+    +.+.+|+..          ..+..+. .+...|.
T Consensus       112 ~~~--------~~~~v~~~~~s~~~~--------~l~~~~~~~~~~~~v~~~d~~----------~~~~~~~-~~~~~v~  164 (615)
T 1pgu_A          112 FQV--------LAGPISDISWDFEGR--------RLCVVGEGRDNFGVFISWDSG----------NSLGEVS-GHSQRIN  164 (615)
T ss_dssp             EEC--------CSSCEEEEEECTTSS--------EEEEEECCSSCSEEEEETTTC----------CEEEECC-SCSSCEE
T ss_pred             hhc--------ccccEEEEEEeCCCC--------EEEEeccCCCCccEEEEEECC----------Ccceeee-cCCccEE
Confidence            443        457788888876655        88888877    788888721          1334443 4678899


Q ss_pred             EEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEc
Q 019405          167 FSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       167 ~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~  244 (341)
                      +++|+|+++ .+++++.|+.|++||+.+++....+..+...      ...|.+++|  +|+ +++|++++.|+.|++||+
T Consensus       165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~--~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ------GSFVRDVEF--SPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT------TCCEEEEEE--CSTTCCEEEEEETTCCEEEEET
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC------CceEEEEEE--CCCCCCEEEEEeCCCeEEEEEC
Confidence            999999998 8999999999999999999988888765420      016999999  889 999999999999999999


Q ss_pred             CCCCceeEEE-E---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEE
Q 019405          245 SAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       245 ~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~  317 (341)
                      ++++. +..+ .   .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+   ....+.++.|. ++.+++
T Consensus       237 ~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  313 (615)
T 1pgu_A          237 KSGEF-LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII  313 (615)
T ss_dssp             TTCCE-EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred             CCCCE-eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence            98764 7777 5   799999999999 9999999999999999999999999888865   23678888885 889999


Q ss_pred             EEeCCCcEEEEEcCCCceeeee
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +++.|+.|++||+.+++++..+
T Consensus       314 ~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          314 SLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             EEETTSCEEEEETTEEEEEEEE
T ss_pred             EEECCCCEEEEECCCCcEEEEE
Confidence            9999999999999998877665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.9e-31  Score=225.55  Aligned_cols=272  Identities=13%  Similarity=0.093  Sum_probs=217.0

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      ..+++++.+|.|++|++...     ++...+..+. .+.+++|++++.    +| ++++.|+.|++||+.+++.+..+..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~-~~~~~~~s~dg~----~l~~~~~~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-----KVTATIPVGS-NPMGAVISPDGT----KVYVANAHSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----EEEEEEECSS-SEEEEEECTTSS----EEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCC-----eEEEEeecCC-CcceEEECCCCC----EEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence            34788899999999998875     5666665554 478888887766    55 6777999999999999988877765


Q ss_pred             cCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      +         ..+.++.+.+...        .+ +++..++.+.+|++....        .+....  ....+.+++|+|
T Consensus        73 ~---------~~v~~~~~spdg~--------~l~~~~~~~~~v~v~d~~~~~--------~~~~~~--~~~~~~~~~~s~  125 (391)
T 1l0q_A           73 G---------SSPQGVAVSPDGK--------QVYVTNMASSTLSVIDTTSNT--------VAGTVK--TGKSPLGLALSP  125 (391)
T ss_dssp             S---------SSEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTE--------EEEEEE--CSSSEEEEEECT
T ss_pred             C---------CCccceEECCCCC--------EEEEEECCCCEEEEEECCCCe--------EEEEEe--CCCCcceEEECC
Confidence            3         4677777766554        45 566677999999986433        333333  456789999999


Q ss_pred             CCCEE-EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCCCce
Q 019405          173 SEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       173 ~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~  250 (341)
                      +++.+ ++++.++.|++||+.+++....+..+          ..+.+++|  +|+++++ ++++.++.|++||+++++. 
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~-  192 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNSV-  192 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEE-
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCeE-
Confidence            99977 67888999999999999888776653          23688899  8899877 5777899999999998653 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEE-EEEeCCCcEE
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLR  326 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~v~  326 (341)
                      +..+. +...+.+++|+|++++|++++   .++.|++||+++++.+..+..+  ..+.+++|+|++++| ++++.|+.|+
T Consensus       193 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~  269 (391)
T 1l0q_A          193 IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVS  269 (391)
T ss_dssp             EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEE
Confidence            55554 556889999999999999888   6899999999999999888876  357899999999977 6778899999


Q ss_pred             EEEcCCCceeeee
Q 019405          327 FWDIKTRQLLSAV  339 (341)
Q Consensus       327 iwd~~~~~~~~~~  339 (341)
                      +||+.+++++..+
T Consensus       270 v~d~~~~~~~~~~  282 (391)
T 1l0q_A          270 VIDTATNTITATM  282 (391)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            9999999888765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-31  Score=221.36  Aligned_cols=238  Identities=13%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hhee
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAI   91 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~   91 (341)
                      .-.+++++.||.|++|++... .+  +++.++.+|..+|.+++|+++..  +++|++|+.|++|+|||+++++.  +..+
T Consensus        21 g~~las~s~D~~v~iw~~~~~-~~--~~~~~l~gH~~~V~~v~~s~~~~--g~~l~s~s~D~~v~iWd~~~~~~~~~~~~   95 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGE-TH--KLIDTLTGHEGPVWRVDWAHPKF--GTILASCSYDGKVMIWKEENGRWSQIAVH   95 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSS-CB--CCCEEECCCSSCEEEEEECCGGG--CSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred             CCEEEEEeCCCEEEEEecCCC-Cc--EEEEEEccccCCeEEEEecCCCc--CCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence            346889999999999998753 12  45567889999999999986421  34899999999999999987753  3333


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ..        +...+.++.+.+....      ..+++++.|+.+++|++......      ...... .|...|.+++|+
T Consensus        96 ~~--------h~~~v~~v~~~p~~~g------~~l~s~s~d~~v~~wd~~~~~~~------~~~~~~-~h~~~v~~~~~~  154 (297)
T 2pm7_B           96 AV--------HSASVNSVQWAPHEYG------PMLLVASSDGKVSVVEFKENGTT------SPIIID-AHAIGVNSASWA  154 (297)
T ss_dssp             CC--------CSSCEEEEEECCGGGC------SEEEEEETTSEEEEEEBCSSSCB------CCEEEE-CCSSCEEEEEEC
T ss_pred             ec--------CCCceeEEEeCcCCCC------cEEEEEECCCcEEEEEecCCCce------eeeeee-cccCccceEeec
Confidence            33        4577888888765311      18999999999999998643210      122222 467789999999


Q ss_pred             CC-------------CCEEEEeeCCCeEEEEECCCCc----eeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEE
Q 019405          172 IS-------------EKFSLFGGKGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFV  231 (341)
Q Consensus       172 ~~-------------~~~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~  231 (341)
                      |+             +++|++|+.|++|++||+++++    ....+..|         ..+|.+++|  +|+   +.+|+
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---------~~~V~~v~~--sp~~~~~~~la  223 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAW--SPTVLLRSYMA  223 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEE--CCCCSSSEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC---------CCceEEEEE--CCCCCCceEEE
Confidence            96             5799999999999999998765    34455554         367999999  777   48999


Q ss_pred             EEeCCCeEEEEEcCCCCce--eEEE--EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          232 AGTNDHQVRLYDTSAQRRP--VMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       232 ~~~~d~~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      +++.|++|++||++....+  ...+  ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999999999999874321  1222  3577889999999999999999999999999976

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-31  Score=229.94  Aligned_cols=249  Identities=14%  Similarity=0.120  Sum_probs=202.1

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      ..++...+.+.+++++..    .+++++.|+.|++||+.+++....+..       .+...+.++.+.+...        
T Consensus        87 ~~~~~~~~~~~~~~~s~~----~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~--------  147 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNL----NVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDGS--------  147 (401)
T ss_dssp             CTTCCCCTTCBCEEECTT----SEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTSS--------
T ss_pred             CCCCcCCceEEEEeecCC----CEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCCC--------
Confidence            345555555555555443    588888999999999999988776665       2557788888877655        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECC-CCceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~  203 (341)
                      .+++++.||.+.+|++....        .+..+. .+...|.+++|  +++++++++.|+.|++||++ .......+..+
T Consensus       148 ~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          148 FLSVGLGNGLVDIYDVESQT--------KLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             EEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EEEEECCCCeEEEEECcCCe--------EEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            89999999999999986433        445554 46788999999  46799999999999999998 45555556554


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-ceEEEEe--CCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGN--GSG  280 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~--~dg  280 (341)
                      .         ..|.+++|  +|++++|++++.|+.|++||+++++ ++..+..|...|.+++|+|++ .++++++  .|+
T Consensus       217 ~---------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~  284 (401)
T 4aez_A          217 S---------SEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK  284 (401)
T ss_dssp             S---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred             C---------CCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence            3         56999999  8899999999999999999999865 477888899999999999977 4555554  799


Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE--eCCCcEEEEEcCCCceee
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC--GLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~  337 (341)
                      .|++||+++++++..+..  ...|.+++|+|++++|+++  +.||.|++||+.+++...
T Consensus       285 ~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~  341 (401)
T 4aez_A          285 QIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK  341 (401)
T ss_dssp             EEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence            999999999999988864  5789999999999999985  489999999999876544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=231.47  Aligned_cols=264  Identities=9%  Similarity=0.007  Sum_probs=195.7

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC---------
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---------   84 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~---------   84 (341)
                      ...+++++.||.|++|++.+.     +.+..+.  ...+..+.+.    |.   +++++.|++|++|+...         
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~--~~~v~~~~~~----~~---~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDS-----KTITTIT--TPNPRTGGEH----PA---IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSS-----SCEEEEE--EECCCTTCCC----CS---EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             CCEEEEECCCCcEEEEECCCC-----cEEEEEe--cCCceeeeeC----Cc---eEEecCCCeEEEEEccCceEEeecCC
Confidence            456899999999999999876     4444443  3445544443    32   99999999999997753         


Q ss_pred             CcchheeeccCCCCCCCCCCceeeEeeee--ccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC
Q 019405           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (341)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~  162 (341)
                      ++.+..+..       .+.+++.++.+.+  ...        .+++++.||.+++|+++...        .+......+.
T Consensus       114 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~~--------~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~  170 (343)
T 3lrv_A          114 NKVLREIEV-------DSANEIIYMYGHNEVNTE--------YFIWADNRGTIGFQSYEDDS--------QYIVHSAKSD  170 (343)
T ss_dssp             CCEEEEEEC-------CCSSCEEEEECCC---CC--------EEEEEETTCCEEEEESSSSC--------EEEEECCCSS
T ss_pred             cceeEEeec-------CCCCCEEEEEcCCCCCCC--------EEEEEeCCCcEEEEECCCCc--------EEEEEecCCC
Confidence            222223222       3456788888877  555        89999999999999986443        4455545556


Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee-eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ..+.+++|+|++.+|++|+.|+.|++||+++++.. ..+..        .|...|.+++|  +|++.+|++++ |+.|++
T Consensus       171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~v~~l~f--s~~g~~l~s~~-~~~v~i  239 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV--------DEEAKIKEVKF--ADNGYWMVVEC-DQTVVC  239 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC--------CTTSCEEEEEE--CTTSSEEEEEE-SSBEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec--------cCCCCEEEEEE--eCCCCEEEEEe-CCeEEE
Confidence            67999999999999999999999999999998876 55655        12367999999  89999999999 559999


Q ss_pred             EEcCCCCceeEEEE---ecCCCe--EEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecC---C
Q 019405          242 YDTSAQRRPVMSFD---FRETPI--KAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---T  312 (341)
Q Consensus       242 wd~~~~~~~~~~~~---~~~~~v--~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~---~  312 (341)
                      ||+++.+. +..+.   .|...+  .+++|+|++++|++++. |+.|++|++.+.......     .++..++|.+   +
T Consensus       240 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~  313 (343)
T 3lrv_A          240 FDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD  313 (343)
T ss_dssp             EETTSSTT-CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC
T ss_pred             EEcCCCCc-ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc
Confidence            99998654 33222   233334  36999999999999998 999999999765433222     3577888988   8


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 019405          313 LPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       313 ~~~l~s~~~dg~v~iwd~~  331 (341)
                      ...+++++.|+.++++-..
T Consensus       314 ~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          314 FTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CCEEEEEEETTEEEEEEEC
T ss_pred             cceeEEEecCCceEEEEec
Confidence            8899999999999888544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.8e-31  Score=231.26  Aligned_cols=234  Identities=14%  Similarity=0.239  Sum_probs=195.8

Q ss_pred             CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        47 ~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      +|...+.++++  +    +++|++|+.||.|++||+.+++....+..        |...+.++.+  ...        .+
T Consensus       131 ~~~~~v~~~~~--d----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~--~~~--------~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTG--------HTGSVLCLQY--DER--------VI  186 (435)
T ss_dssp             SSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECC--------CSSCEEEEEC--CSS--------EE
T ss_pred             CCCCcEEEEEE--C----CCEEEEEeCCCeEEEEeCCCCeEEEEEcC--------CCCcEEEEEE--CCC--------EE
Confidence            45566666654  3    45899999999999999999988887776        4577888877  233        89


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee---eecCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPP  203 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~  203 (341)
                      ++++.||.+.+|++....        .+..+. .+...|.+++++  ++.+++++.|+.|++||+++++..   ..+..+
T Consensus       187 ~sg~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             EEEETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             EEEcCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            999999999999986443        444444 467789999996  469999999999999999887654   334433


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                               ...|.+++|    +++++++++.|+.|++||+++++. +..+..|...|.++.++  +.++++|+.||.|+
T Consensus       256 ---------~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~  319 (435)
T 1p22_A          256 ---------RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR  319 (435)
T ss_dssp             ---------SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             ---------CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence                     356888888    678999999999999999998764 88899999999999994  56999999999999


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +||+++++++..+.+| ...|.+++|  ++.+|++++.||.|++||+.+++
T Consensus       320 iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          320 LWDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEETTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEECCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            9999999999999998 899999999  78899999999999999998766

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.2e-32  Score=232.37  Aligned_cols=266  Identities=8%  Similarity=-0.006  Sum_probs=185.3

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccC-------CeEEEeeCCCCcch--heeeccCCCCCCCCCCceeeEeeeecccc-c
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQRE-E  118 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  118 (341)
                      .-+|++++|++++.    +|++|+.+       ++|++|++..+...  ..+........+.+++.+.++.+....-- .
T Consensus        14 g~PV~sv~fs~dg~----~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g   89 (365)
T 4h5i_A           14 GYPAYGAKFLNNDT----LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVG   89 (365)
T ss_dssp             SSCEEEEEEEETTE----EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEE
T ss_pred             CCCEEEEEEeCCCc----EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEE
Confidence            35799999998776    88888643       36999998765432  22222211222345566666654221000 0


Q ss_pred             cccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee-------cCCceEEEEecCCCCEEEE--eeCCCeEEEE
Q 019405          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-------ASGTIAFSKVDISEKFSLF--GGKGVEVNVW  189 (341)
Q Consensus       119 ~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-------~~~~i~~~~~~~~~~~l~~--~~~d~~v~i~  189 (341)
                      .+.....+++++.|+.+++|++....       +.+......       ....+.+++|+|||+++++  ++.|++|++|
T Consensus        90 ~~~~~~~l~s~~~d~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           90 CNENSTKITQGKGNKHLRKFKYDKVN-------DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII  162 (365)
T ss_dssp             CCCCHHHHHHTSCCCCEEEEEEETTT-------TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred             ECCCccEEEEecCCCcEEEEEecCCC-------ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence            00001133444556777787765432       122222111       1234789999999999765  4578999999


Q ss_pred             ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCeEEEEEcC
Q 019405          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRETPIKAVAEEP  268 (341)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~  268 (341)
                      |+++++.+..+..+          ..|.+++|  +|+++++++++.+ .+++|+..+++... .....|...|.+++|+|
T Consensus       163 d~~~~~~~~~~~~~----------~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          163 DPSDLTEKFEIETR----------GEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             ETTTTEEEEEEECS----------SCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCC----------CceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            99999988877532          45999999  9999999999855 56677766655422 23345788899999999


Q ss_pred             CCceEEEEeCCC----CEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          269 DSFNIYIGNGSG----DLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       269 ~~~~l~~g~~dg----~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +++++++++.|+    .+++|++.....    ...+.+| ...|++++|+|+|++||+|+.|++|+|||+++++++.++
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence            999999999887    588899877653    3456676 889999999999999999999999999999999998875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-31  Score=231.84  Aligned_cols=250  Identities=16%  Similarity=0.132  Sum_probs=196.5

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc---chheeeccCC------------------------------
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGD------------------------------   96 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~------------------------------   96 (341)
                      .++.+++|++++.    +|+ ++.++.|++||+.+++   .+..+..+..                              
T Consensus         5 ~p~~~v~~s~dg~----~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRDGS----LVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSSSS----EEE-EEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCCCC----EEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            4678888888776    444 4468899999999988   5555543221                              


Q ss_pred             ----------------CCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEee--ecccccccCCceEEEE
Q 019405           97 ----------------SGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIE--VTKVSAESSCSTVKSW  157 (341)
Q Consensus        97 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~--~~~~~~~~~~~~v~~~  157 (341)
                                      ....++.+.+.++.+.+...        .| ++++.||.+++|++.  ...        .+..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--------~l~~~~~~dg~v~iwd~~~~~~~--------~~~~~  143 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------RLIACADSDKSLLVFDVDKTSKN--------VLKLR  143 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSS--------EEEEEEGGGTEEEEEEECSSSSS--------CEEEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCC--------EEEEEECCCCeEEEEECcCCCCc--------eeeee
Confidence                            00012334677887766655        64 889999999999986  322        34444


Q ss_pred             Ee-ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee----ecCCCCCCccCccCCeeeeEEEEEecCC---CCE
Q 019405          158 NV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRK  229 (341)
Q Consensus       158 ~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~  229 (341)
                      .. .+...|.+++|+|++++|++++.++.|++|++.+++...    .+..         |...|.+++|  +|+   +.+
T Consensus       144 ~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~--sp~~~~~~~  212 (450)
T 2vdu_B          144 KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHL--IKDSDGHQF  212 (450)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEE--EECTTSCEE
T ss_pred             ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEE--cCCCCCCcE
Confidence            32 356789999999999999999999999999998766443    2222         3467999999  777   889


Q ss_pred             EEEEeCCCeEEEEEcCCCCceeEE-EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---------
Q 019405          230 FVAGTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---------  299 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------  299 (341)
                      |++++.|+.|++||+++++. +.. +.+|...|.+++|+ ++.+|++++.|+.|++||+++++++..+..+         
T Consensus       213 l~s~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~  290 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND  290 (450)
T ss_dssp             EEEEETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred             EEEEcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence            99999999999999998765 555 55799999999999 9999999999999999999999998888643         


Q ss_pred             ---------------ccCceeEEEecCCCCEEEEEe-CCCcEEEEEc--CCC
Q 019405          300 ---------------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDI--KTR  333 (341)
Q Consensus       300 ---------------~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~--~~~  333 (341)
                                     ....|.+++|+|++++|++++ .|+.|++|++  .++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          291 QHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             TSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             cccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence                           135689999999999999998 8999999999  555

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-31  Score=226.75  Aligned_cols=243  Identities=12%  Similarity=0.045  Sum_probs=178.0

Q ss_pred             eeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        41 ~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      .+..+..|...|.+++|++++.    +|++|+.+ .++||+.++++.......          ..+..+.+......   
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~----~la~g~~~-~~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---   72 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQS----CLILSTLK-SFEIYNVHPVAHIMSQEM----------RHLSKVRMLHRTNY---   72 (355)
T ss_dssp             --------CCCCCEEEECTTSS----EEEEECSS-EEEEEEETTEEEEEEEEC----------SCCCEEEECTTSSE---
T ss_pred             CccccccCCCceEEEEECCCCC----EEEEEcCC-EEEEEecCCcceeeeeec----------CCeEEEEEcCCCCE---
Confidence            4445677999999999998777    78888866 578999987665443322          12333444333331   


Q ss_pred             cccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCC-ceeee
Q 019405          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWT  199 (341)
Q Consensus       121 ~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-~~~~~  199 (341)
                          .+++++.++.+++|++....        .+..+  .+...|.+++++++.  ++++ .++.|++||+.++ +.+..
T Consensus        73 ----~~~~~~~d~~v~iWd~~~~~--------~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~  135 (355)
T 3vu4_A           73 ----VAFVTGVKEVVHIWDDVKKQ--------DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD  135 (355)
T ss_dssp             ----EEEECSSTTEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC
T ss_pred             ----EEEEECCccEEEEEECCCCc--------EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE
Confidence                44678888999999986443        34443  356789999998764  4433 4779999999887 55444


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEE--EeCCCeEEEEEcCCCC--------------ce-eEEEEecCCCeE
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPIK  262 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~--------------~~-~~~~~~~~~~v~  262 (341)
                      +..            ....+++  ++  .++++  |+.||.|++||+++++              .+ +..+.+|..+|+
T Consensus       136 ~~~------------~~~~~~~--s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~  199 (355)
T 3vu4_A          136 DIR------------FGGVCEF--SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK  199 (355)
T ss_dssp             CEE------------EEEEEEE--ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred             ecc------------CCceEEE--Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence            332            1334455  44  56666  5889999999999754              12 678889999999


Q ss_pred             EEEEcCCCceEEEEeCCCC-EEEEECCCCeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          263 AVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +++|+|++++|++|+.|++ |++||+++++++..+. +.|...|++++|+|++++|++++.|+.|++||++.+.
T Consensus       200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999999999999999998 9999999999999998 5238999999999999999999999999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.1e-32  Score=225.33  Aligned_cols=238  Identities=12%  Similarity=0.055  Sum_probs=181.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~   92 (341)
                      -.+++++.||.|++|++...   ....+..+.+|...|.+++|+++..  +++|++|+.|++|+|||+++++.  ...+.
T Consensus        26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~~~~--~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~  100 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAHPMY--GNILASCSYDRKVIIWREENGTWEKSHEHA  100 (316)
T ss_dssp             CEEEEEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECCGGG--SSCEEEEETTSCEEEECCSSSCCCEEEEEC
T ss_pred             CEEEEEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCCCCC--CCEEEEEECCCEEEEEECCCCcceEEEEcc
Confidence            45889999999999999864   1134567889999999999986421  34799999999999999987743  33333


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      .        |...+.++.+.+....      ..+++++.|+.+++|++......      .+......|...+.+++|+|
T Consensus       101 ~--------h~~~V~~v~~~p~~~g------~~lasgs~D~~i~lwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A          101 G--------HDSSVNSVCWAPHDYG------LILACGSSDGAISLLTYTGEGQW------EVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             C--------CSSCCCEEEECCTTTC------SCEEEECSSSCEEEEEECSSSCE------EECCBTTSSSSCBCCCEECC
T ss_pred             C--------CCCceEEEEECCCCCC------cEEEEEcCCCCEEEEecCCCCCc------ceeeeeccccCCcceEEEcc
Confidence            3        4577888888765321      18999999999999998643210      00011123456788889988


Q ss_pred             C-----------------CCEEEEeeCCCeEEEEECCCC---ceeeecCCCCCCccCccCCeeeeEEEEEecCCC----C
Q 019405          173 S-----------------EKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----R  228 (341)
Q Consensus       173 ~-----------------~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~  228 (341)
                      +                 +++|++|+.|+.|++||++..   +....+..|         ..+|.+++|  +|++    .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h---------~~~V~~v~~--sp~~~~~~~  229 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH---------SDWVRDVAW--APSIGLPTS  229 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC---------SSCEEEEEC--CCCSSCSCC
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC---------CCceEEEEe--cCCCCCCCc
Confidence            7                 478999999999999999754   344445543         467999999  7775    7


Q ss_pred             EEEEEeCCCeEEEEEcCCC---CceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          229 KFVAGTNDHQVRLYDTSAQ---RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      +|++++.|++|++||+...   ......+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            8999999999999998762   11234566788999999999999999999999999999975

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-31  Score=229.92  Aligned_cols=254  Identities=13%  Similarity=0.064  Sum_probs=194.8

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC-cchheeeccCCCCCCCCCCceeeEeeee-ccccccccccceeEEE
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTC  129 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  129 (341)
                      ...++++++..   .++++++.||.|+||++.+. +....+..     ...|.+.+.++.+.+ ...        .++++
T Consensus        37 ~~~~~~~~~~~---~~~~~~~~~g~i~v~~~~~~~~~~~~~~~-----~~~h~~~V~~~~~~p~~~~--------~l~s~  100 (402)
T 2aq5_A           37 SGFCAVNPKFM---ALICEASGGGAFLVLPLGKTGRVDKNVPL-----VCGHTAPVLDIAWCPHNDN--------VIASG  100 (402)
T ss_dssp             SCSEEECSSEE---EEEBCCSSSCCEEEEETTCCEECCTTCCC-----BCCCSSCEEEEEECTTCTT--------EEEEE
T ss_pred             CCcEEECCCeE---EEEEEEcCCCEEEEEECccCCCCCCCCce-----EecCCCCEEEEEeCCCCCC--------EEEEE
Confidence            33455555443   13445788999999999653 22111111     123668899999877 444        99999


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeec--CCCCCC
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKN  206 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~~~~  206 (341)
                      +.||.+++|++........ ....+..+. .|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..+   
T Consensus       101 s~dg~v~vw~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---  175 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLP-LREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH---  175 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSC-BCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC---
T ss_pred             eCCCeEEEEEccCCCCccc-cCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC---
Confidence            9999999999875432110 012344444 467899999999998 69999999999999999999988887  443   


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-EecCCC-eEEEEEcCCCceEEEE---eCCCC
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGD  281 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~g---~~dg~  281 (341)
                            ...|.+++|  +|++++|++++.|+.|++||+++++. +..+ ..|... +.++.|+|++.+|++|   +.|+.
T Consensus       176 ------~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~  246 (402)
T 2aq5_A          176 ------PDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ  246 (402)
T ss_dssp             ------CSCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE
T ss_pred             ------CCceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce
Confidence                  366999999  88999999999999999999998664 6666 677765 8999999999999999   78999


Q ss_pred             EEEEECCCCeE-EeEEeccccCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCce
Q 019405          282 LASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       282 i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~  335 (341)
                      |++||+++++. +......+...+.+++|+|++++|++ ++.|+.|++||+.+++.
T Consensus       247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            99999998654 33333223678999999999998864 55799999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.7e-31  Score=226.58  Aligned_cols=299  Identities=8%  Similarity=-0.023  Sum_probs=187.5

Q ss_pred             eeeeecCCCCeEEEEEecCcc---Ccc--ceeeeccCCCCCceeEEEec----------------cCCCCCceEEEEccC
Q 019405           16 RALTFDSLGLIKVIEARGEHG---GVP--KVVERWGDPHSSNCVLAASI----------------DDSQNDPLLAVARKN   74 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~s~----------------~~~~~~~~l~~~~~d   74 (341)
                      .+++.+.++.|++|.......   +..  ..+..+ .+...+..+.++.                ...+.+.+|++|+.|
T Consensus        32 ~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d  110 (393)
T 4gq1_A           32 NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQD  110 (393)
T ss_dssp             TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETT
T ss_pred             CEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCC
Confidence            466667788899998765411   000  011111 1223333333321                112334579999999


Q ss_pred             CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE
Q 019405           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (341)
Q Consensus        75 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v  154 (341)
                      ++|+|||.++++.......   ....+|.+.|.++.|.+............|++++.|++++|||+....        .+
T Consensus       111 ~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--------~~  179 (393)
T 4gq1_A          111 NTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--------PI  179 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--------EE
T ss_pred             CcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--------ee
Confidence            9999999987754332111   112347788999998762110000011289999999999999986433        33


Q ss_pred             EEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCC----------------ccCccCCeeee
Q 019405          155 KSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN----------------SLGIFTPTWFT  217 (341)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~v~  217 (341)
                      ... ..+...+.+++|+|++ .+|++++.|++|++||+++++...........                .....|...+.
T Consensus       180 ~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          180 LAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            322 2456789999999987 47999999999999999987655433221110                01123456788


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE------------------EEcC--CCceEEEEe
Q 019405          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV------------------AEEP--DSFNIYIGN  277 (341)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~g~  277 (341)
                      ++.|. .+++..|++++.|+++++||+...+. ...+..|...+..+                  .++|  ++.++++|+
T Consensus       259 ~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs  336 (393)
T 4gq1_A          259 NVRWI-GSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS  336 (393)
T ss_dssp             EEEEE-TTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred             eeeee-cCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence            88885 58999999999999999999987543 44444443333332                  3333  345677888


Q ss_pred             CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .||.|++||+.+++.+..+..| ..+|++++|+|+|++||+++.|| +.+|.+.
T Consensus       337 ~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          337 QHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999999988888887 78999999999999999998776 6666553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=227.74  Aligned_cols=244  Identities=9%  Similarity=0.045  Sum_probs=190.8

Q ss_pred             CceeEEEeccCCCCCceE-EEEccCCeEEEeeCC--CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           51 SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      .+.+++|++++.    +| ++++.||.|+|||+.  +++.+..+..+      .+...+.++.+.+...        .|+
T Consensus       104 ~v~~~~~s~d~~----~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~--------~l~  165 (450)
T 2vdu_B          104 YIRNLRLTSDES----RLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDDT--------TVI  165 (450)
T ss_dssp             CEEEEEECTTSS----EEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTSS--------EEE
T ss_pred             ceEEEEEcCCCC----EEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCCC--------EEE
Confidence            688888887766    75 889999999999998  78887777643      2346788888876655        899


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCceeeec-CCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWTA-KPP  203 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~  203 (341)
                      +++.+|.+.+|++.......    ..+..+. .+...|.+++|+|+   +++|++++.|+.|++||+++++.+..+ ..+
T Consensus       166 ~~~~~g~v~~~~~~~~~~~~----~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEEK----FTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             EEETTSEEEEEETTSCCCSS----CCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             EEeCCCcEEEEecCCccccc----ccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence            99999999999986443210    0111222 35678999999999   999999999999999999988877663 333


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------------------------cC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RE  258 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~  258 (341)
                               ...|.+++|  + ++.+|++++.|+.|++||+++++. +..+..                         ..
T Consensus       241 ---------~~~v~~~~~--s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          241 ---------KHFVSSICC--G-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             ---------SSCEEEEEE--C-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             ---------CCceEEEEE--C-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccce
Confidence                     366999999  8 999999999999999999998764 666652                         23


Q ss_pred             CCeEEEEEcCCCceEEEEe-CCCCEEEEEC--CCC---eEEeEEeccccCceeEEEecCCCCEEEEEeC------CCcEE
Q 019405          259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLR  326 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~v~  326 (341)
                      ..|.+++|+|++++|++++ .++.|++|++  .++   +.+..+..+  ..|.+++|+|++.+++.++.      +..|.
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~  385 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAK  385 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceE
Confidence            5789999999999999998 8999999999  555   677778775  78999999996544444443      55688


Q ss_pred             EEEcCC
Q 019405          327 FWDIKT  332 (341)
Q Consensus       327 iwd~~~  332 (341)
                      +|.+..
T Consensus       386 v~~~~~  391 (450)
T 2vdu_B          386 FIEYNL  391 (450)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            887653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-30  Score=223.70  Aligned_cols=285  Identities=9%  Similarity=0.037  Sum_probs=186.5

Q ss_pred             ceeeeecCCCCeEEEEEecCccCcccee---------eeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVV---------ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~---------~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~   85 (341)
                      -.+++++.||.|++|++.....- ....         .....|...+.+++|+++..   .+|++++.||.|++||+.++
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~  132 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSRQ-SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT---GMFTSSSFDKTLKVWDTNTL  132 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSS-SCEEECEEEEECTTCTTCCSSCEEEEEECTTCT---TCEEEEETTSEEEEEETTTT
T ss_pred             CEEEEEcCCCeEEEEECCCCccc-ceEeccccccccccccccCCCcEEEEEEccCCC---cEEEEEeCCCeEEEeeCCCC
Confidence            45788999999999999876211 1110         00135889999999988332   37999999999999999998


Q ss_pred             cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce
Q 019405           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (341)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i  165 (341)
                      +....+..         ...+.++.+.+...     ....+++++.++.+.+|++....        .+..+. .+...|
T Consensus       133 ~~~~~~~~---------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~v  189 (408)
T 4a11_B          133 QTADVFNF---------EETVYSHHMSPVST-----KHCLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQEI  189 (408)
T ss_dssp             EEEEEEEC---------SSCEEEEEECSSCS-----SCCEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSCE
T ss_pred             ccceeccC---------CCceeeeEeecCCC-----CCcEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCcE
Confidence            87776653         25566666655332     12289999999999999986443        334443 367889


Q ss_pred             EEEEecCCCC-EEEEeeCCCeEEEEECCCCc-eeeecCCCCC------CccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405          166 AFSKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPK------NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (341)
Q Consensus       166 ~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  237 (341)
                      .+++|+|+++ ++++++.||.|++||++++. ....+..+..      ......|...|.+++|  +|++++|++++.|+
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg  267 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF--TSDGLHLLTVGTDN  267 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE--cCCCCEEEEecCCC
Confidence            9999999998 58899999999999998765 3333322111      1111335678999999  89999999999999


Q ss_pred             eEEEEEcCCCC----------------------------------------------ceeEEEEecCCCeEEEEEcCCCc
Q 019405          238 QVRLYDTSAQR----------------------------------------------RPVMSFDFRETPIKAVAEEPDSF  271 (341)
Q Consensus       238 ~i~iwd~~~~~----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~  271 (341)
                      .|++||+.+++                                              .++..+.+|...|++++|+|+++
T Consensus       268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  347 (408)
T 4a11_B          268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ  347 (408)
T ss_dssp             CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT
T ss_pred             eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC
Confidence            99999987643                                              23556677999999999999999


Q ss_pred             eEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEeCCCcEEEEEcCC
Q 019405          272 NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       272 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      +|++++.||.|++||+.+++.+...... .   ....+.+ ....+.+.+.|+.+++|+...
T Consensus       348 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          348 ELYSGSRDCNILAWVPSLYEPVPDDDET-T---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             EEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred             EEEEECCCCeEEEEeCCCCCccCCCCce-E---eccccccccceeecccCccCceeecCCcc
Confidence            9999999999999999999887665543 1   1223444 334566777899999998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-30  Score=219.05  Aligned_cols=252  Identities=9%  Similarity=0.012  Sum_probs=193.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc-------
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-------   87 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------   87 (341)
                      -.+++++.||.|++|++... ...++....+.+|...+.+++|++..  ++++|++|+.||.|++||+.+++.       
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  100 (351)
T 3f3f_A           24 RHVATCSSDQHIKVFKLDKD-TSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKTVKLWEEDPDQEECSGRRW  100 (351)
T ss_dssp             SEEEEEETTSEEEEEEECSS-SCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred             CEEEEeeCCCeEEEEECCCC-CCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence            35788899999999999875 23345666788899999999998741  133899999999999999987643       


Q ss_pred             --hheeeccCCCCCCCCCCceeeEeeeec--cccccccccceeEEEcccceeEEEEeeecccccccC-CceEE---EEEe
Q 019405           88 --RVAISNAGDSGAQPEDDGIVGLHLFKR--QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CSTVK---SWNV  159 (341)
Q Consensus        88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~-~~~v~---~~~~  159 (341)
                        +..+.        .+...+.++.+.+.  ..        .+++++.||.+.+|++.......... ...+.   ....
T Consensus       101 ~~~~~~~--------~~~~~v~~~~~~~~~~~~--------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A          101 NKLCTLN--------DSKGSLYSVKFAPAHLGL--------KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEEEEC--------CCSSCEEEEEECCGGGCS--------EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             ceeeeec--------ccCCceeEEEEcCCCCCc--------EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence              33333        35578888888776  44        89999999999999987654321000 00000   0111


Q ss_pred             ecCCceEEEEecCC---CCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCC----CEE
Q 019405          160 CASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----RKF  230 (341)
Q Consensus       160 ~~~~~i~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l  230 (341)
                      .+...+.+++|+|+   +.++++++.++.+.+|+...++.  ...+..+         ...|.+++|  +|++    ++|
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~i~~~~~--~p~~~~~~~~l  233 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------KSLIRSISW--APSIGRWYQLI  233 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC---------CSCEEEEEE--CCCSSCSSEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC---------CcceeEEEE--CCCCCCcceEE
Confidence            34567999999997   89999999999998888877664  4445443         366999999  7887    899


Q ss_pred             EEEeCCCeEEEEEcCCCC---------------------------------------------ceeEEEEecCCCeEEEE
Q 019405          231 VAGTNDHQVRLYDTSAQR---------------------------------------------RPVMSFDFRETPIKAVA  265 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~~v~~~~  265 (341)
                      ++++.|+.|++||++...                                             .++..+.+|...|++++
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            999999999999998641                                             24566777999999999


Q ss_pred             EcCCCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  296 (341)
                      |+|++++|++++.||.|++||+.+++.+..+
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            9999999999999999999999987655444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=6.6e-30  Score=216.41  Aligned_cols=253  Identities=7%  Similarity=-0.026  Sum_probs=179.7

Q ss_pred             eEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405           26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD  104 (341)
Q Consensus        26 i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  104 (341)
                      +++|++...     +.....  +...+..+++.++..    ++ ++++.|++|+|||..+++.+..+...         .
T Consensus        42 ~~iw~~~~~-----~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~d~~v~iWd~~~~~~~~~~~~~---------~  101 (355)
T 3vu4_A           42 FEIYNVHPV-----AHIMSQ--EMRHLSKVRMLHRTN----YVAFVTGVKEVVHIWDDVKKQDVSRIKVD---------A  101 (355)
T ss_dssp             EEEEEETTE-----EEEEEE--ECSCCCEEEECTTSS----EEEEECSSTTEEEEEETTTTEEEEEEECS---------S
T ss_pred             EEEEecCCc-----ceeeee--ecCCeEEEEEcCCCC----EEEEEECCccEEEEEECCCCcEEEEEECC---------C
Confidence            477776543     232222  223466777776554    55 56788899999999999888777642         4


Q ss_pred             ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE--eeC
Q 019405          105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF--GGK  182 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~--~~~  182 (341)
                      .+.++.+.+.          .++. ..++.+++|++.....       .+..+..    ....+++++  .++++  |+.
T Consensus       102 ~v~~v~~~~~----------~~~~-~~~~~i~i~d~~~~~~-------~~~~~~~----~~~~~~~s~--~~la~~sg~~  157 (355)
T 3vu4_A          102 PVKDLFLSRE----------FIVV-SYGDVISVFKFGNPWK-------RITDDIR----FGGVCEFSN--GLLVYSNEFN  157 (355)
T ss_dssp             CEEEEEECSS----------EEEE-EETTEEEEEESSTTCC-------BSSCCEE----EEEEEEEET--TEEEEEESSC
T ss_pred             ceEEEEEcCC----------EEEE-EEcCEEEEEECCCCce-------eeEEecc----CCceEEEEc--cEEEEeCCCc
Confidence            6666665321          3333 3478999999875411       1111211    233445556  55665  688


Q ss_pred             CCeEEEEECCCCce----------------eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe-EEEEEcC
Q 019405          183 GVEVNVWDLDKCEK----------------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-VRLYDTS  245 (341)
Q Consensus       183 d~~v~i~d~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~  245 (341)
                      ||.|++||+++++.                +..+..         |...|.+++|  +|++++|++++.|++ |++||++
T Consensus       158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------h~~~v~~~~~--s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA---------HTNPIKMVRL--NRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             TTCEEEEECCC------------------CCEEECC---------CSSCEEEEEE--CTTSSEEEEEETTCSEEEEEETT
T ss_pred             CcEEEEEECCCCCccccccccccccccCcccEEEEc---------cCCceEEEEE--CCCCCEEEEEeCCCCEEEEEECC
Confidence            99999999987651                334444         4477999999  899999999999998 9999999


Q ss_pred             CCCceeEEEE-e-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE--eE--------------------Eecccc
Q 019405          246 AQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC--------------------FIGKCS  301 (341)
Q Consensus       246 ~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~--------------------~~~~~~  301 (341)
                      +++. +..+. + |...|.+++|+|++++|++++.|+.|++||++++...  ..                    +.....
T Consensus       227 ~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          227 DGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             TCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             CCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence            8775 78887 4 8999999999999999999999999999999765311  11                    111112


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .....++|+++++.|++++.||.+++|++..+.
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            234779999999999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-30  Score=224.00  Aligned_cols=233  Identities=10%  Similarity=0.042  Sum_probs=177.0

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +.+|...+..++|+|++           .++++.+|+.   +....+..       .+.+.+.+++|.+.+.        
T Consensus        48 l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~---~~~~~~~~-------~~~~~V~~vawSPdG~--------   98 (588)
T 2j04_A           48 INCNSKNLFHVKEFPLE-----------FENKLDFELA---QQNGLLNS-------QPVCYPRVCKPSPIDD--------   98 (588)
T ss_dssp             CSSBGGGTEEEEEECCC-----------CCCTTTTSCC---CSSCSSTT-------SCSCCEEEEEECSSSS--------
T ss_pred             ecCCCccEEEEEECCCC-----------CcceEEEEeC---CCceEeec-------CCCCcEEEEEECCCCC--------
Confidence            45788888888887755           2444444443   22222221       2347788888887766        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecC----CceEEEEecCCCCEEEEeeCCCeEEEEECCCCce----
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----  196 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~----  196 (341)
                      .+++++.||.+.+|+.+.          .+...+ .+.    ..+.+++|+|+|++|++|+.||+|++||+.++..    
T Consensus        99 ~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           99 WMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             CEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            999999999999998421          333333 221    2599999999999999999999999999988752    


Q ss_pred             ---eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEE-ecCCCeEEEEEcCCC
Q 019405          197 ---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFD-FRETPIKAVAEEPDS  270 (341)
Q Consensus       197 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~  270 (341)
                         +..+..+..     .|..+|.+++|  +|++  +++++.|++|++||+...+.  ..+.+. +|...|.+++|+  +
T Consensus       168 ~i~l~ti~~~~~-----gh~~~V~sVaw--SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          168 FYFESSIRLSDA-----GSKDWVTHIVW--YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CEEEEEEECSCT-----TCCCCEEEEEE--ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             ceeeeeeecccc-----cccccEEEEEE--cCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence               344433221     14578999999  8888  78889999999999987653  235564 688899999999  5


Q ss_pred             ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe--cCCCCEEEEEeCCCcEEEEEcC
Q 019405          271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       271 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +.|++++ ++.|++||+.+++......+| .+.|..++|  +|++..|++++.||. ++|..+
T Consensus       237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          237 YKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             TEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            7888887 699999999988874444366 899999999  999999999999999 999976

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.3e-29  Score=215.45  Aligned_cols=266  Identities=11%  Similarity=0.089  Sum_probs=208.7

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceee-----eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      .+++++.+|.|++|++...     +...     .+.+|...+..++|++++.    ++++++.|+.|++||+++++.+..
T Consensus       136 ~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~s~~~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          136 LAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVETISIPEHNE----LWVSQMQANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             EEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEEEEEGGGTE----EEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeEEEEcCCCE----EEEEECCCCEEEEEECCCceEEEE
Confidence            3556677889999998765     3333     4556888899899876655    899999999999999998888777


Q ss_pred             eeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  169 (341)
                      +..        +...+.++.+.+...        .+ +++..++.+.+|++....        .+..  ......+.+++
T Consensus       207 ~~~--------~~~~~~~~~~~~~~~--------~l~~~~~~~~~i~~~d~~~~~--------~~~~--~~~~~~~~~~~  260 (433)
T 3bws_A          207 VDL--------TGKWSKILLYDPIRD--------LVYCSNWISEDISVIDRKTKL--------EIRK--TDKIGLPRGLL  260 (433)
T ss_dssp             EEC--------SSSSEEEEEEETTTT--------EEEEEETTTTEEEEEETTTTE--------EEEE--CCCCSEEEEEE
T ss_pred             EcC--------CCCCeeEEEEcCCCC--------EEEEEecCCCcEEEEECCCCc--------EEEE--ecCCCCceEEE
Confidence            764        335677777765544        45 566689999999985332        2232  33356689999


Q ss_pred             ecCCCCEEEEee--------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEE
Q 019405          170 VDISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVR  240 (341)
Q Consensus       170 ~~~~~~~l~~~~--------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~  240 (341)
                      ++|+++++++++        .|+.|++||+.+++....+..          ...+.+++|  +|+++. +++++.|+.|+
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~~g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP----------PGNKRHIVS--GNTENKIYVSDMCCSKIE  328 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------EECEEEEEE--CSSTTEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------CCCcceEEE--CCCCCEEEEEecCCCEEE
Confidence            999999999888        488999999998877665421          245788999  888865 46668999999


Q ss_pred             EEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---------------CCCEEEEECCCCeEEeEEeccccCcee
Q 019405          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      +||+.+++. +..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.+..+..+  ..+.
T Consensus       329 v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~  404 (433)
T 3bws_A          329 VYDLKEKKV-QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPT  404 (433)
T ss_dssp             EEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEE
T ss_pred             EEECCCCcE-EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCc
Confidence            999997653 55554 6678999999999998888876               579999999999999888764  5789


Q ss_pred             EEEecCCCCEEEEEeC-CCcEEEEEcCC
Q 019405          306 SIARHPTLPIIASCGL-DSYLRFWDIKT  332 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~-dg~v~iwd~~~  332 (341)
                      +++|+|++++|++++. |+.|++|+++.
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999988875 99999999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.6e-30  Score=217.47  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=186.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~   92 (341)
                      -.+++++.||.|++|++... ++  +....+.+|...+.+++|+++..  +++|++++.||.|++||+.+++  .+..+.
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~   98 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGE-TH--KLIDTLTGHEGPVWRVDWAHPKF--GTILASCSYDGKVLIWKEENGRWSQIAVHA   98 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETT-EE--EEEEEECCCSSCEEEEEECCGGG--CSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEECCCcEEEEecCCC-cc--eeeeEecCCCCcEEEEEeCCCCC--CCEEEEeccCCEEEEEEcCCCceeEeeeec
Confidence            35788889999999999843 12  56667888999999999987622  3489999999999999998876  334443


Q ss_pred             ccCCCCCCCCCCceeeEeeeec--cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKR--QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      .        +...+.++.+.+.  ..        .+++++.|+.+.+|++......      ..... ..+...|.+++|
T Consensus        99 ~--------~~~~v~~~~~~~~~~~~--------~l~~~~~d~~i~v~d~~~~~~~------~~~~~-~~~~~~v~~~~~  155 (379)
T 3jrp_A           99 V--------HSASVNSVQWAPHEYGP--------LLLVASSDGKVSVVEFKENGTT------SPIII-DAHAIGVNSASW  155 (379)
T ss_dssp             C--------CSSCEEEEEECCGGGCS--------EEEEEETTSEEEEEECCTTSCC------CEEEE-ECCTTCEEEEEE
T ss_pred             C--------CCcceEEEEeCCCCCCC--------EEEEecCCCcEEEEecCCCCce------eeEEe-cCCCCceEEEEE
Confidence            3        4577888888776  34        8999999999999998754211      12222 346788999999


Q ss_pred             cC-------------CCCEEEEeeCCCeEEEEECCCCce----eeecCCCCCCccCccCCeeeeEEEEEecCC---CCEE
Q 019405          171 DI-------------SEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKF  230 (341)
Q Consensus       171 ~~-------------~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l  230 (341)
                      +|             ++.++++++.|+.|++||++++..    ...+..+         ...|.+++|  +|+   +.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h---------~~~v~~~~~--sp~~~~~~~l  224 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------SDWVRDVAW--SPTVLLRSYL  224 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC---------SSCEEEEEE--CCCCSSSEEE
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc---------cCcEeEEEE--CCCCCCCCeE
Confidence            99             699999999999999999987643    2344443         366999999  888   8999


Q ss_pred             EEEeCCCeEEEEEcCCCCcee--EE--EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          231 VAGTNDHQVRLYDTSAQRRPV--MS--FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      ++++.|+.|++||++.+..+.  ..  ...|...|.+++|+|++++|++++.||.|++|++..
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999864221  11  223778999999999999999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.3e-28  Score=213.39  Aligned_cols=244  Identities=16%  Similarity=0.201  Sum_probs=196.3

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ...++||..     ++|++|. |++|+|||..+++....+..+      .+.+.|.++.|.+...        .|++|+.
T Consensus       108 ~~~l~wS~~-----n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg~--------~lasgs~  167 (420)
T 4gga_A          108 LNLVDWSSG-----NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGN--------YLAVGTS  167 (420)
T ss_dssp             CBCEEECTT-----SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSS--------EEEEEET
T ss_pred             ceeEEECCC-----CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCCC--------EEEEEEC
Confidence            345677642     3577775 999999999999988877753      3557799999877666        9999999


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGI  210 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~  210 (341)
                      ||.+.+|++....        .++.+. .|...+.+++++  +.++++|+.|+.+++||..... .+..+..+.      
T Consensus       168 Dg~v~iWd~~~~~--------~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~------  230 (420)
T 4gga_A          168 SAEVQLWDVQQQK--------RLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS------  230 (420)
T ss_dssp             TSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS------
T ss_pred             CCeEEEEEcCCCc--------EEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc------
Confidence            9999999986443        445544 356778887764  6899999999999999988643 344455443      


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCc-eEEE--EeCCCCEEE
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSF-NIYI--GNGSGDLAS  284 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~--g~~dg~i~i  284 (341)
                         ..+..+.+  .|++.++++++.|+.+++|+...++.   .+.....|...|.+++|+|.+. ++++  |+.|+.|++
T Consensus       231 ---~~~~~~~~--~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          231 ---QEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             ---cceeeeee--cCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence               55888999  89999999999999999999987542   3566777899999999999764 4444  457999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||+.+++++..+..+  ..+.++.|+|++..+++++  .|+.|+|||+.+++++.++
T Consensus       306 wd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          306 WNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             EETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             EeCCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence            999999999988865  6799999999999887765  7999999999999998876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.9e-30  Score=220.08  Aligned_cols=232  Identities=9%  Similarity=0.031  Sum_probs=173.0

Q ss_pred             cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        46 ~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      ++-...+..++|++|+.    ++|+++.|++|+  |...++.+   .+        |.+.+.++.+.+..          
T Consensus        12 ~~~~~~v~sv~~SpDG~----~iASas~D~TV~--d~~~~~~l---~g--------h~~~v~~V~FsPdg----------   64 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT----LYLTTFPDISIG--QPKYAKDI---NC--------NSKNLFHVKEFPLE----------   64 (588)
T ss_dssp             CCCSSSSCCEEECTTSC----EEEECSSSEEEE--EECCCSCC---SS--------BGGGTEEEEEECCC----------
T ss_pred             hHhhccEEEEEECCCCC----EEEEEcCCceee--ccccccee---cC--------CCccEEEEEECCCC----------
Confidence            34567788999998887    899999999999  65544433   33        44666666654421          


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                           .++.+.+|+.+.           .......+...|.+++|+|+|++||+++.||.|++||.+.  .+..+. +..
T Consensus        65 -----~~~~~~~~~~~~-----------~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~  125 (588)
T 2j04_A           65 -----FENKLDFELAQQ-----------NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG  125 (588)
T ss_dssp             -----CCCTTTTSCCCS-----------SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred             -----CcceEEEEeCCC-----------ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence                 233333333211           1122223457899999999999999999999999999644  444444 321


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEE----EecCCCeEEEEEcCCCceEEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSF----DFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ..    ....+.+++|  +|+|++|++|+.||+|++||+.++..      .+..+    .+|...|.+++|+|+|  +++
T Consensus       126 ~~----~~~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa  197 (588)
T 2j04_A          126 NL----SSRTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA  197 (588)
T ss_dssp             CS----TTTCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred             cc----ccccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence            10    0124899999  99999999999999999999998642      35666    4566799999999999  888


Q ss_pred             EeCCCCEEEEECCCCeE---EeEEe-ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          276 GNGSGDLASVDIRTGKL---LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      ++.|+.|++||+..++.   ..+++ +| ...|.+++|+  ++.||+++ ++.|++||+.+++.
T Consensus       198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          198 ALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             EETTCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             EeCCCeEEEEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence            89999999999988773   35664 55 7899999999  68999887 69999999998776

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.3e-28  Score=209.15  Aligned_cols=279  Identities=8%  Similarity=-0.020  Sum_probs=207.0

Q ss_pred             eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCC
Q 019405           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG   98 (341)
Q Consensus        19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   98 (341)
                      .+.++|.+++|.+... ++..+.+..+..+ ..+.+++|+++    +.++++++.++.|++||+.+++....+...   .
T Consensus        94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~-~~~~~~~~s~~----~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~  164 (433)
T 3bws_A           94 RKPEELNEKLIALDKE-GITHRFISRFKTG-FQPKSVRFIDN----TRLAIPLLEDEGMDVLDINSGQTVRLSPPE---K  164 (433)
T ss_dssp             SSGGGGTTCEEECCBT-TCSEEEEEEEECS-SCBCCCEESSS----SEEEEEBTTSSSEEEEETTTCCEEEECCCH---H
T ss_pred             cccCCCceEEEEECCC-CCcceEEEEEcCC-CCceEEEEeCC----CeEEEEeCCCCeEEEEECCCCeEeeecCcc---c
Confidence            3455666677766543 2223344455433 33457777763    347788888999999999988776533210   0


Q ss_pred             CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (341)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~  178 (341)
                      ...+...+.++.+.+...        .+++++.++.+.+|+++...        .+..+. .+...+.+++|+|+++.++
T Consensus       165 ~~~~~~~v~~~~~~~~~~--------~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNE--------LWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTE--------EEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred             ccccCCceeEEEEcCCCE--------EEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence            012446777777744333        88999999999999985332        344443 3567899999999999885


Q ss_pred             -EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--------CCCeEEEEEcCCCCc
Q 019405          179 -FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR  249 (341)
Q Consensus       179 -~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~  249 (341)
                       +++.++.|++||+++++....+..+          ..+.+++|  +|+++++++++        .|+.|++||+++++.
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~  295 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL  295 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence             4557999999999999887776653          34889999  89999999888        488999999998653


Q ss_pred             eeEEEEecCCCeEEEEEcCCCceE-EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC-------
Q 019405          250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-------  321 (341)
Q Consensus       250 ~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-------  321 (341)
                       +..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. + ...+.+++|+|++++|++++.       
T Consensus       296 -~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~  371 (433)
T 3bws_A          296 -IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-V-FDKPNTIALSPDGKYLYVSCRGPNHPTE  371 (433)
T ss_dssp             -EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred             -Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-C-CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence             4443 455688999999999655 666889999999999999888876 3 678999999999998888876       


Q ss_pred             --------CCcEEEEEcCCCceeeee
Q 019405          322 --------DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       322 --------dg~v~iwd~~~~~~~~~~  339 (341)
                              ||.|++||+.+++.+..+
T Consensus       372 ~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          372 GYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             CTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             ccccccccceEEEEEECCCCcEEEEe
Confidence                    579999999999887664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-27  Score=203.28  Aligned_cols=213  Identities=19%  Similarity=0.227  Sum_probs=169.3

Q ss_pred             CCCCceeeEeeeecc--ccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405          101 PEDDGIVGLHLFKRQ--REESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~  178 (341)
                      .|.+.+.++.+.+..  +.       .+++++.||.+++|++....       ..+...-..|...|.+++|+|++++|+
T Consensus        37 ~h~~~v~~~~~~~~~~~g~-------~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGN-------FLIAGSWANDVRCWEVQDSG-------QTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSE-------EEEEEETTSEEEEEEECTTS-------CEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCceEEEEEcCCCCCce-------EEEEECCCCcEEEEEcCCCC-------ceeEEEeccccCCEEEEEECcCCCEEE
Confidence            366889999988764  22       89999999999999986421       133222234788999999999999999


Q ss_pred             EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405          179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (341)
Q Consensus       179 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  258 (341)
                      +++.|+.|++||+++++......          |...|.+++|.+++++.+|++++.|+.|++||+++++. +..+..+.
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~  171 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQ----------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQLPE  171 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE----------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEECSS
T ss_pred             EEcCCCcEEEEEcCCCCceeecc----------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEecCC
Confidence            99999999999999887765332          33669999997788999999999999999999988653 55554332


Q ss_pred             -----------------------------------------CCeEEEEEcCCCce----EEEEeCCCCEEEEECCCC---
Q 019405          259 -----------------------------------------TPIKAVAEEPDSFN----IYIGNGSGDLASVDIRTG---  290 (341)
Q Consensus       259 -----------------------------------------~~v~~~~~~~~~~~----l~~g~~dg~i~iwd~~~~---  290 (341)
                                                               ..+.++.+.++...    +++++.|+.|++||++..   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~  251 (368)
T 3mmy_A          172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA  251 (368)
T ss_dssp             CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred             CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence                                                     23344444444433    999999999999999887   


Q ss_pred             eEEeEEeccccC------------ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          291 KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       291 ~~~~~~~~~~~~------------~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+..+..| ..            +|++++|+|++++|++++.||.|++||+++++++..+
T Consensus       252 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          252 KDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             HHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence            556777776 43            7999999999999999999999999999999988765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.9e-28  Score=210.36  Aligned_cols=256  Identities=10%  Similarity=-0.050  Sum_probs=173.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccC----CCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD----SQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      ..+++++.|+.|++|++.........++..+.+|...|..++|++..    ..++++||+|+.|++|+|||+.++.....
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            34778999999999999886222223445678899999999999732    23456999999999999999988776666


Q ss_pred             eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccccc-------CCceEE--------
Q 019405           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-------SCSTVK--------  155 (341)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~-------~~~~v~--------  155 (341)
                      +..        +...+.++.|.+.+..       .+++++.|+.+++||+.........       ....+.        
T Consensus       182 ~~~--------~~~~v~~v~~~p~~~~-------~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          182 GYP--------LSSPGISVQFRPSNPN-------QLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEE--------CSSCEEEEEEETTEEE-------EEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             ecC--------CCCCcEEEEECCCCCc-------eEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            655        3477888888766543       7999999999999998755321100       000000        


Q ss_pred             -EEEeecCCceEEEEec-CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc---------CccCCeeeeEEEEEec
Q 019405          156 -SWNVCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL---------GIFTPTWFTSAAFLSI  224 (341)
Q Consensus       156 -~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~  224 (341)
                       .-...+...+.++.|. ++++.+++++.|+++++||+..++....+..+.....         ............|.|.
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence             0011234567888886 7999999999999999999988766555543322110         0001122334455444


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       225 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                      .++.++++|+.|++|++||+.+++. +..+..|..+|.+++|+|+|++||+++.+| +.+|.+
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            4566778888999999999998765 667777889999999999999999998766 556554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=4.7e-27  Score=195.76  Aligned_cols=244  Identities=17%  Similarity=0.204  Sum_probs=191.1

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ..+++||+++     +||+|. |++|+|||+++++.+..+..+      .+...+.++.+.+...        .+++++.
T Consensus        28 ~~~l~WS~~~-----~lAvg~-D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~~--------~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN-----VLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEGN--------YLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS-----EEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTSS--------EEEEEET
T ss_pred             ceEEEECCCC-----EEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCCC--------EEEEEEC
Confidence            3567887542     577765 999999999999998888764      3557788888877766        9999999


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCCCCCccCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGI  210 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~~~~  210 (341)
                      ||.+++|+++..+        .++.+. .|...+.++.  +++..+++++.++.+++|+...... +..+..+.      
T Consensus        88 Dg~v~iw~~~~~~--------~~~~~~-~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~------  150 (318)
T 4ggc_A           88 SAEVQLWDVQQQK--------RLRNMT-SHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS------  150 (318)
T ss_dssp             TSEEEEEETTTTE--------EEEEEE-CCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCS------
T ss_pred             CCcEEEeecCCce--------eEEEec-CccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCcc------
Confidence            9999999986443        444444 3455555544  4578999999999999999886543 34444433      


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEEEecCCCeEEEEEcCCCceE---EEEeCCCCEEE
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNI---YIGNGSGDLAS  284 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l---~~g~~dg~i~i  284 (341)
                         ..+..+.+  .+++++|++++.|+.|++||+++++.   .......+...|.+++++|++..+   ++++.++.|++
T Consensus       151 ---~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l  225 (318)
T 4ggc_A          151 ---QEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  225 (318)
T ss_dssp             ---SCEEEEEE--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred             ---CceEEEEE--cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence               55888899  88999999999999999999987542   244556678899999999977533   46678899999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe--CCCcEEEEEcCCCceeeee
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||.+..........  ...+..+.|+|++..+++++  .|+.|++||+++++++.++
T Consensus       226 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          226 WNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             EETTTCCEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             Eecccccccccccc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            99998887766553  57899999999999877654  7999999999999998876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.4e-26  Score=198.63  Aligned_cols=231  Identities=13%  Similarity=0.105  Sum_probs=185.4

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++++++.|+.|++||+.+++.+..+..+         ..+.++.+.+....       .+++++.++.+.+|++....  
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~-------l~~~~~~d~~i~v~d~~~~~--   65 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGTK-------VYVANAHSNDVSIIDTATNN--   65 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSSE-------EEEEEGGGTEEEEEETTTTE--
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCCE-------EEEECCCCCeEEEEECCCCe--
Confidence            5888999999999999999888877753         44677776655441       34677799999999985433  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                            .+..+.  ....+.+++|+|+++++++ ++.++.|++||+.+++.+..+..+          ..+.+++|  +|
T Consensus        66 ------~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~--s~  125 (391)
T 1l0q_A           66 ------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--SP  125 (391)
T ss_dssp             ------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--CT
T ss_pred             ------EEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEE--CC
Confidence                  333333  3458999999999998764 556799999999999887776643          33788999  88


Q ss_pred             CCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE-EEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          226 DHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       226 ~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      +++++ ++++.++.|++||+.+++. +..+..+ ..+..++|+|+++.| ++++.++.|++||+++++.+..+..  ...
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~  201 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAA  201 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCC
Confidence            99877 6788899999999998654 6666655 567999999999877 5777889999999999998887764  468


Q ss_pred             eeEEEecCCCCEEEEEe---CCCcEEEEEcCCCceeeee
Q 019405          304 IRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.+++|+|++++|++++   .++.|++||+++++++..+
T Consensus       202 ~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            99999999999988888   6899999999999887665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.5e-27  Score=205.89  Aligned_cols=247  Identities=9%  Similarity=0.020  Sum_probs=187.2

Q ss_pred             ceeeeecCCCCeEEEEEecCc-----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh
Q 019405           15 LRALTFDSLGLIKVIEARGEH-----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~   89 (341)
                      ..+++++.+|.|++|++....     .+..+....+..|...+++++|++++..   +|++|+.||.|++|++.++....
T Consensus       142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~  218 (430)
T 2xyi_A          142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG---YLLSASDDHTICLWDINATPKEH  218 (430)
T ss_dssp             EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT---EEEEECTTSCEEEEETTSCCBGG
T ss_pred             cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC---eEEEEeCCCeEEEEeCCCCCCCC
Confidence            357788899999999998621     0112455677889999999999876542   79999999999999998743321


Q ss_pred             e-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           90 A-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      . +...  ..+..+...+.++.+.+....       .+++++.+|.+++|++.....     ...+..+. .+...|.++
T Consensus       219 ~~~~~~--~~~~~h~~~v~~v~~~p~~~~-------~l~s~~~dg~i~i~d~~~~~~-----~~~~~~~~-~~~~~v~~i  283 (430)
T 2xyi_A          219 RVIDAK--NIFTGHTAVVEDVAWHLLHES-------LFGSVADDQKLMIWDTRNNNT-----SKPSHTVD-AHTAEVNCL  283 (430)
T ss_dssp             GEEECS--EEECCCSSCEEEEEECSSCTT-------EEEEEETTSEEEEEETTCSCS-----SSCSEEEE-CCSSCEEEE
T ss_pred             ceeccc--eeecCCCCCEeeeEEeCCCCC-------EEEEEeCCCeEEEEECCCCCC-----CcceeEee-cCCCCeEEE
Confidence            1 1100  001135677888888774442       889999999999999875421     12334443 467889999


Q ss_pred             EecCCCC-EEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEEEEEcC
Q 019405          169 KVDISEK-FSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       169 ~~~~~~~-~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~  245 (341)
                      +|+|++. ++++|+.||.|++||+++ .+.+..+..+.         ..|.+++|  +|++. +|++++.|+.|++||+.
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---------~~v~~i~~--sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK---------DEIFQVQW--SPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---------SCEEEEEE--CSSCTTEEEEEETTSCCEEEEGG
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---------CCEEEEEE--CCCCCCEEEEEeCCCcEEEEeCC
Confidence            9999887 688999999999999987 44555555543         66999999  78774 69999999999999998


Q ss_pred             CCC-------------ceeEEEEecCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCCC
Q 019405          246 AQR-------------RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       246 ~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~  290 (341)
                      ...             ..+..+.+|...|++++|+|++. +|++++.||.|++|++...
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            622             34666677888999999999998 8999999999999998643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-27  Score=215.95  Aligned_cols=207  Identities=14%  Similarity=0.156  Sum_probs=173.7

Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC--CCEEE
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSL  178 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~--~~~l~  178 (341)
                      .|.+.+.++.+.+...        .+++++.||.+.+|++.....      ..+..+. .|...|.+++|+|+  +++|+
T Consensus         7 gH~~~V~~l~~s~dg~--------~latg~~dg~I~vwd~~~~~~------~~~~~l~-~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            7 AHNELIHDAVLDYYGK--------RLATCSSDKTIKIFEVEGETH------KLIDTLT-GHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             -CCCCEEEECCCSSSC--------CEEEEETTTEEEEEEEETTEE------EEEEEEC-CCSSCEEEEEECCTTSCSEEE
T ss_pred             cCcceeEEEEECCCCC--------eEEEEECCCcEEEEecCCCCC------ccceecc-CCcCceEEEEecCCCCCCEEE
Confidence            4678899998877655        899999999999999863210      1233333 46789999999988  99999


Q ss_pred             EeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCC--CCEEEEEeCCCeEEEEEcCCCC-ceeEE
Q 019405          179 FGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR-RPVMS  253 (341)
Q Consensus       179 ~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~-~~~~~  253 (341)
                      +|+.||.|++||+.+++  ....+..+         ...|.+++|  +|+  +.++++++.||.|++||++... .....
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h---------~~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHAVH---------SASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCC---------SSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             EEeCCCeEEEEECCCCcccccccccCC---------CCCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence            99999999999999876  45555544         366999999  777  9999999999999999998763 23556


Q ss_pred             EEecCCCeEEEEEcC-------------CCceEEEEeCCCCEEEEECCCC----eEEeEEeccccCceeEEEecCC---C
Q 019405          254 FDFRETPIKAVAEEP-------------DSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPT---L  313 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~-------------~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~i~~~~~~~~---~  313 (341)
                      +..|...|.+++|+|             ++.+|++|+.||.|++||++++    ..+..+.+| ...|++++|+|+   +
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSS
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCC
Confidence            778999999999999             5899999999999999999877    566778887 899999999999   8


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc
Q 019405          314 PIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       314 ~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .+|++++.||.|++||+.+++
T Consensus       220 ~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          220 SYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             EEEEEEESSSCEEEEEESSSS
T ss_pred             CEEEEEecCCEEEEecCCCCC
Confidence            999999999999999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.8e-25  Score=197.55  Aligned_cols=293  Identities=13%  Similarity=0.041  Sum_probs=209.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEec----cCCCCCceEEEEc-cCCeEEEeeCCCCcchh
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASI----DDSQNDPLLAVAR-KNGLTDILNPLNGDLRV   89 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~----~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~   89 (341)
                      -.+++++.++.|++|+++.. ++  +++.++. +......++|++    ++.    +|++++ .+++|.|||..+++++.
T Consensus       191 ~~l~v~~~d~~V~v~D~~~~-t~--~~~~~i~-~g~~p~~va~sp~~~~dg~----~l~v~~~~~~~v~v~D~~t~~~~~  262 (543)
T 1nir_A          191 RYLLVIGRDARIDMIDLWAK-EP--TKVAEIK-IGIEARSVESSKFKGYEDR----YTIAGAYWPPQFAIMDGETLEPKQ  262 (543)
T ss_dssp             CEEEEEETTSEEEEEETTSS-SC--EEEEEEE-CCSEEEEEEECCSTTCTTT----EEEEEEEESSEEEEEETTTCCEEE
T ss_pred             CEEEEECCCCeEEEEECcCC-CC--cEEEEEe-cCCCcceEEeCCCcCCCCC----EEEEEEccCCeEEEEeccccccce
Confidence            35677777889999999422 12  4555664 344567788887    555    888887 48999999999999888


Q ss_pred             eeeccCCCCCC--CC-CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           90 AISNAGDSGAQ--PE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        90 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      .+.........  .+ +..+..+.+.+....       .+++...++.+.+|++....        .+.+....+...+.
T Consensus       263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-------~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~~~~  327 (543)
T 1nir_A          263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-------FIVNVKETGKVLLVNYKDID--------NLTVTSIGAAPFLH  327 (543)
T ss_dssp             EEECCEECSSSCCEESCCCEEEEEECSSSSE-------EEEEETTTTEEEEEECTTSS--------SCEEEEEECCSSCC
T ss_pred             eecccCcccCccccccCCceEEEEECCCCCE-------EEEEECCCCeEEEEEecCCC--------cceeEEeccCcCcc
Confidence            77652110000  01 124555555443332       67788889999999976432        23333344566788


Q ss_pred             EEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEe-CCCeEEEEE
Q 019405          167 FSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQVRLYD  243 (341)
Q Consensus       167 ~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~-~d~~i~iwd  243 (341)
                      .+.|+|++++++++ ..+++|.+||+.+++.+..+.....     .|+....  .|. +|+ +..++++. .|++|.+||
T Consensus       328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~-----ph~g~g~--~~~-~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT-----PHPGRGA--NFV-HPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-----BCCTTCE--EEE-ETTTEEEEEEEBSSSSEEEEEE
T ss_pred             CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-----CCCCCCc--ccC-CCCCccEEEeccCCCceEEEEE
Confidence            89999999987655 4588999999999998877764321     1222222  222 455 66666665 589999999


Q ss_pred             cCC-------CCceeEEEEecCCCeEEEEEcCCCceEEEEe-------CCCCEEEEECCCCeEE-eEE--------eccc
Q 019405          244 TSA-------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IGKC  300 (341)
Q Consensus       244 ~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~-~~~--------~~~~  300 (341)
                      ..+       .+ .++.+..|...+..++++|++++|++++       .+++|.+||+.+++.. ..+        ..+ 
T Consensus       400 ~~~~~~~~~~~~-~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-  477 (543)
T 1nir_A          400 TDPKNHPQYAWK-KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-  477 (543)
T ss_dssp             CCTTTCTTTBTS-EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-
T ss_pred             eCCCCCchhcCe-EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-
Confidence            987       45 4889998988889999999999999987       2679999999998876 333        233 


Q ss_pred             cCceeEEEecCCCCEEEEEe-----CCCcEEEEEcCCCceeeeec
Q 019405          301 SGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~  340 (341)
                      ...+..+.|+|+|+.|+.+.     .|+.|.|||.+++++++++.
T Consensus       478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            57899999999999887663     47999999999999998763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=7.1e-25  Score=178.65  Aligned_cols=238  Identities=10%  Similarity=0.063  Sum_probs=157.1

Q ss_pred             eEEEEccCCeEEEeeCCCC---cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeee
Q 019405           67 LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEV  142 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~  142 (341)
                      .+++++ ...|++|+..++   +.+.++..+        +.++..+.+.+...+       .+..+ +.-..-.++.+.+
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFA--------EVPVLQIVPVPDVYN-------LVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEECC--------SSCEEEECCCTTCCS-------CEEEEECSSSEEEEEEECC
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEecc--------CceeEEEEEcCcccc-------eeeeeeccccccceEEEEE
Confidence            466676 679999999988   566666653        355666666554332       22222 2223334555544


Q ss_pred             cccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee--CCCeEEEEECC-CCceeeecCCCCCCccCccCCeeeeEE
Q 019405          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (341)
Q Consensus       143 ~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (341)
                      .+     +|+....+.+..+..+.-..+ ++++++.+++  .|+.|++|++. +++.+..+..+.         ..++.+
T Consensus       120 sp-----d~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~---------~~v~~l  184 (356)
T 2w18_A          120 SS-----DDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP---------PEETIL  184 (356)
T ss_dssp             -----------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------CSSCEE
T ss_pred             CC-----CccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------CceeeE
Confidence            44     222222222221111222222 5677777644  69999999994 477766655543         447778


Q ss_pred             EEEe-cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---CCeEEEEEcCCCceE------------EEEeCCCCEE
Q 019405          220 AFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIKAVAEEPDSFNI------------YIGNGSGDLA  283 (341)
Q Consensus       220 ~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~g~~dg~i~  283 (341)
                      +|.+ ..++.+|++++.|++|+|||+.+++. ++++.+|.   ..+.+++|+|+|.++            ++|+.|++|+
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIk  263 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLI  263 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETTTCCE-EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEE
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECCCCcE-EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEE
Confidence            8832 23789999999999999999999875 88887654   367788999999876            5678899999


Q ss_pred             EEECCCCeEEeEEe-----ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          284 SVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       284 iwd~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +||..+++.+..+.     +| ...+.+..+  ++.++++++.|++|+|||+.+|++++++
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL  321 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL  321 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence            99999999877652     44 444444444  4889999999999999999999998876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.5e-24  Score=187.14  Aligned_cols=268  Identities=8%  Similarity=0.016  Sum_probs=192.3

Q ss_pred             CCC----CeEEEEE--ecCccCcccee--eeccCCCCCceeEEEecc--------C--CCCCceEEEEccC------CeE
Q 019405           22 SLG----LIKVIEA--RGEHGGVPKVV--ERWGDPHSSNCVLAASID--------D--SQNDPLLAVARKN------GLT   77 (341)
Q Consensus        22 ~~g----~i~~~~~--~~~~~g~~~~~--~~~~~~~~~~~~~~~s~~--------~--~~~~~~l~~~~~d------g~i   77 (341)
                      .+|    .+++|++  ...     +.+  ..+..|...+..+++.+.        +  .+.+..++.++.+      +.|
T Consensus        87 ~~G~~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i  161 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPG-----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL  161 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTT-----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred             CCCeEEEEEEEEeCCCCCC-----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence            568    7899998  654     333  356677777776665541        1  1123457666654      799


Q ss_pred             EEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc---eeEEEEeeecccccccCCceE
Q 019405           78 DILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTV  154 (341)
Q Consensus        78 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g---~~~i~~~~~~~~~~~~~~~~v  154 (341)
                      ++||++ +.....+..+        ...+.++.|.+...        .++.++.++   .+.+|++....        . 
T Consensus       162 ~i~d~~-g~~~~~l~~~--------~~~v~~~~~Spdg~--------~la~~s~~~~~~~i~~~d~~tg~--------~-  215 (415)
T 2hqs_A          162 RVSDYD-GYNQFVVHRS--------PQPLMSPAWSPDGS--------KLAYVTFESGRSALVIQTLANGA--------V-  215 (415)
T ss_dssp             EEEETT-SCSCEEEEEE--------SSCEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTTCC--------E-
T ss_pred             EEEcCC-CCCCEEEeCC--------CCcceeeEEcCCCC--------EEEEEEecCCCcEEEEEECCCCc--------E-
Confidence            999997 4445555553        35677777766555        788887774   89999985332        2 


Q ss_pred             EEEEeecCCceEEEEecCCCCEEE-EeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405          155 KSWNVCASGTIAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (341)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (341)
                      .... .+...+.+++|+|+++.|+ +++.++  .|++||+.+++. ..+..+.         ..+.+++|  +|++++|+
T Consensus       216 ~~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---------~~~~~~~~--spdg~~l~  282 (415)
T 2hqs_A          216 RQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR---------SNNTEPTW--FPDSQNLA  282 (415)
T ss_dssp             EEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS---------SCEEEEEE--CTTSSEEE
T ss_pred             EEee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC---------CcccceEE--CCCCCEEE
Confidence            2222 3456899999999999888 566554  499999988765 3344332         45889999  89999998


Q ss_pred             EEeC-CC--eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC---CCEEEEECCCCeEEeEEeccccCcee
Q 019405          232 AGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       232 ~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      +++. ++  .|++||+.+++  ...+..+...+.+++|+|+|++|++++.+   ..|++||+.+++.. .+..+ . .+.
T Consensus       283 ~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~-~~~  357 (415)
T 2hqs_A          283 FTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-F-LDE  357 (415)
T ss_dssp             EEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-S-SCE
T ss_pred             EEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-C-CcC
Confidence            8876 44  68888988754  44455577788999999999999988764   57999999988774 45554 3 899


Q ss_pred             EEEecCCCCEEEEEeCCC---cEEEEEcCCCceeeee
Q 019405          306 SIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~  339 (341)
                      +++|+|+|++|++++.|+   .|++||+.. +.+..+
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l  393 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL  393 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEEC
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEe
Confidence            999999999999988877   799999974 444443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3.5e-24  Score=190.52  Aligned_cols=272  Identities=13%  Similarity=0.124  Sum_probs=200.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeC--CCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~   92 (341)
                      ..+++.+.+|.|.+|+....     +++.++..+.. +..++|++++.    +|++++.|++|++||+  .+++.+.++.
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~-~~~v~~spdg~----~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA-VHISRMSASGR----YLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT-EEEEEECTTSC----EEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc-cceEEECCCCC----EEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            34667788899999987765     66667753333 67788887766    8999999999999999  7877777665


Q ss_pred             ccCCCCCCCCCCceeeEeeee----ccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEee-------
Q 019405           93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC-------  160 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-------  160 (341)
                      ..         .....+.+.+    ...        .++++. .++++.+||....+        .+..+...       
T Consensus       220 ~g---------~~p~~va~sp~~~~dg~--------~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~  274 (543)
T 1nir_A          220 IG---------IEARSVESSKFKGYEDR--------YTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQ  274 (543)
T ss_dssp             CC---------SEEEEEEECCSTTCTTT--------EEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSC
T ss_pred             cC---------CCcceEEeCCCcCCCCC--------EEEEEEccCCeEEEEeccccc--------cceeecccCcccCcc
Confidence            41         4455666554    344        666665 58999999965333        34444331       


Q ss_pred             ---cCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          161 ---ASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       161 ---~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                         ....+..+.++|++.. +++...++.|.+||+.+.+.+.  .+..          ...+..+.|  +|++++|++++
T Consensus       275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------~~~~~~~~~--spdg~~l~va~  342 (543)
T 1nir_A          275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------APFLHDGGW--DSSHRYFMTAA  342 (543)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------CSSCCCEEE--CTTSCEEEEEE
T ss_pred             ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------CcCccCceE--CCCCCEEEEEe
Confidence               1236889999997654 5566778999999998765433  2221          134677899  89999776554


Q ss_pred             -CCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCC-CceEEEEe-CCCCEEEEECCC-------CeEEeEEeccc
Q 019405          235 -NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKC  300 (341)
Q Consensus       235 -~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~g~-~dg~i~iwd~~~-------~~~~~~~~~~~  300 (341)
                       .+++|.+||..+++. +..+..    |......+ ++|+ +..++++. .|++|.+||+.+       ++.+.++..| 
T Consensus       343 ~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-  419 (543)
T 1nir_A          343 NNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-  419 (543)
T ss_dssp             GGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred             cCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-
Confidence             589999999998764 666664    44333333 4777 56666665 579999999998       8999999988 


Q ss_pred             cCceeEEEecCCCCEEEEEe-------CCCcEEEEEcCCCcee
Q 019405          301 SGSIRSIARHPTLPIIASCG-------LDSYLRFWDIKTRQLL  336 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~  336 (341)
                      ...+..++++|++++|++++       .+++|.+||+.+++..
T Consensus       420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            77889999999999999987       3789999999998876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=3.7e-24  Score=179.65  Aligned_cols=277  Identities=12%  Similarity=0.010  Sum_probs=195.4

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCC--CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS--SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .+++++.+|.|.+|++...     +++..+.....  .+..+++++++.   .+++++..++.|.+||+.+++.+..+..
T Consensus         3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~~~~~~   74 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMVAPGGR---IAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEECTTSS---EEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCccceEEcCCCC---EEEEEeCCCCeEEEEECCCCCeEeeEEc
Confidence            3678889999999998765     45545532221  366788887765   1345566789999999999887766654


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------------ccceeEEEEeeecccccccCCceEEEEEeec
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~  161 (341)
                      ....   .+...+..+.+.+...        .++++.            .++.+.+|++....        .+..+.  .
T Consensus        75 ~~~~---~~~~~~~~~~~s~dg~--------~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~  133 (337)
T 1pby_B           75 STPE---ERVKSLFGAALSPDGK--------TLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE--A  133 (337)
T ss_dssp             CBTT---EEEECTTCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE--C
T ss_pred             CCcc---cccccccceEECCCCC--------EEEEEecccccccccccccCceEEEEECCCCc--------EEEEEe--C
Confidence            1100   0001334455544333        566654            46899999875322        333333  3


Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-C---
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H---  237 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~---  237 (341)
                      ...+..++|+|++++++++  ++.|.+||+.+++....+......          ..+.|  +|++..++..+.+ +   
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~--s~dg~~l~~~~~~~~~~~  199 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE----------AETYA--QPDVLAVWNQHESSGVMA  199 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT----------TTTBC--CCBCCCCCCCCTTTTEEE
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC----------CCcee--CCCccEEeeeccCCCcee
Confidence            4567888999999988887  678999999998887666543210          01244  6666655443322 2   


Q ss_pred             --------------------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          238 --------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       238 --------------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                                          .|.+||+.+++.....+..+...+.+++|+|++++++++  ++.|++||+.+++.+..+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             eeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence                                578999998765334455566678899999999999888  7899999999999888877


Q ss_pred             ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+  ..+.+++|+|++++|++++.++.|++||+.+++.+.++
T Consensus       278 ~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          278 LP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             CS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            53  56889999999999998999999999999999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.5e-22  Score=168.90  Aligned_cols=275  Identities=10%  Similarity=0.057  Sum_probs=182.9

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC-CeEEEeeCC--CCcch--hee
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLR--VAI   91 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~~~--~~~   91 (341)
                      +++.+.+|.|++|++...  +..+.+..+ .+...+..++|++++.    +|++++.+ +.|++|++.  +++..  ..+
T Consensus         8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~spdg~----~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHE--GALTLTQVV-DVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEE-ECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCC--CcEEEeeeE-ecCCCCceEEECCCCC----EEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            344478999999999753  333343344 3566777888887766    78887776 999999997  44432  222


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~  170 (341)
                      ..         ...+..+.+.+...        .++++ ..++.+.+|++....     ....+..  ......+.+++|
T Consensus        81 ~~---------~~~~~~~~~s~dg~--------~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~--~~~~~~~~~~~~  136 (343)
T 1ri6_A           81 AL---------PGSLTHISTDHQGQ--------FVFVGSYNAGNVSVTRLEDGL-----PVGVVDV--VEGLDGCHSANI  136 (343)
T ss_dssp             EC---------SSCCSEEEECTTSS--------EEEEEETTTTEEEEEEEETTE-----EEEEEEE--ECCCTTBCCCEE
T ss_pred             cc---------CCCCcEEEEcCCCC--------EEEEEecCCCeEEEEECCCCc-----ccccccc--ccCCCCceEEEE
Confidence            22         12455566554444        45444 458899999985111     0012222  223456888999


Q ss_pred             cCCCCEEEEee-CCCeEEEEECCC-Cceee----ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEE
Q 019405          171 DISEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD  243 (341)
Q Consensus       171 ~~~~~~l~~~~-~d~~v~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd  243 (341)
                      +|+++++++++ .++.|.+||+.+ ++...    .+..+.        ...+..++|  +|+++++++++ .++.|++||
T Consensus       137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------GAGPRHMVF--HPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------CCCcceEEE--CCCCCEEEEEeCCCCEEEEEE
Confidence            99999888777 889999999987 54432    112111        134778999  89998776554 789999999


Q ss_pred             cCC--CCc-eeEEEEec------CCCeEEEEEcCCCceEEE-EeCCCCEEEEECC----CCeEEeEEeccccCceeEEEe
Q 019405          244 TSA--QRR-PVMSFDFR------ETPIKAVAEEPDSFNIYI-GNGSGDLASVDIR----TGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       244 ~~~--~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~~-g~~dg~i~iwd~~----~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      +..  ++. ........      ...+..++|+|++++|++ +..++.|.+||+.    +.+.+..+..+ . .+..++|
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~  284 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNV  284 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEE
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEE
Confidence            964  221 12222211      234668999999988775 4478999999998    33455556554 3 4899999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEc--CCCc
Q 019405          310 HPTLPIIASCG-LDSYLRFWDI--KTRQ  334 (341)
Q Consensus       310 ~~~~~~l~s~~-~dg~v~iwd~--~~~~  334 (341)
                      +|++++|++++ .++.|.+|++  .+++
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            99999888877 6899999954  4553

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2.7e-23  Score=170.91  Aligned_cols=256  Identities=11%  Similarity=-0.009  Sum_probs=183.1

Q ss_pred             ecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCC
Q 019405           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSG   98 (341)
Q Consensus        20 ~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~   98 (341)
                      .+.++.|.+|++...     +.. .+..|...+..++|++++.    +|++++ ++.|++||+.+ ++.......+    
T Consensus        18 ~~~~~~i~~~d~~~~-----~~~-~~~~~~~~v~~~~~spdg~----~l~~~~-~~~i~~~d~~~~~~~~~~~~~~----   82 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR-----KMR-VVWQTPELFEAPNWSPDGK----YLLLNS-EGLLYRLSLAGDPSPEKVDTGF----   82 (297)
T ss_dssp             CCCCEEEEEEETTTT-----EEE-EEEEESSCCEEEEECTTSS----EEEEEE-TTEEEEEESSSCCSCEECCCTT----
T ss_pred             CCcceeEEEEeCCCC-----cee-eeccCCcceEeeEECCCCC----EEEEEc-CCeEEEEeCCCCCCceEecccc----
Confidence            456788888887764     332 3445788899999988776    788876 88999999988 7665444331    


Q ss_pred             CCCCCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                         ....+.++.|.+...        .++.+.  .++...+|.++...       +..+.+  .....+..++|+|+++.
T Consensus        83 ---~~~~~~~~~~spdg~--------~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~--~~~~~~~~~~~spdg~~  142 (297)
T 2ojh_A           83 ---ATICNNDHGISPDGA--------LYAISDKVEFGKSAIYLLPSTG-------GTPRLM--TKNLPSYWHGWSPDGKS  142 (297)
T ss_dssp             ---CCCBCSCCEECTTSS--------EEEEEECTTTSSCEEEEEETTC-------CCCEEC--CSSSSEEEEEECTTSSE
T ss_pred             ---ccccccceEECCCCC--------EEEEEEeCCCCcceEEEEECCC-------CceEEe--ecCCCccceEECCCCCE
Confidence               224555666655544        777777  44677777775322       122222  22345888999999998


Q ss_pred             EE-EeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCceeE
Q 019405          177 SL-FGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       177 l~-~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~  252 (341)
                      ++ ++..++.+++|+++  +++. ..+..+         ...+.+++|  +|++++|+.++ .++.+++|++......+.
T Consensus       143 l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---------~~~~~~~~~--s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          143 FTYCGIRDQVFDIYSMDIDSGVE-TRLTHG---------EGRNDGPDY--SPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCE-EECCCS---------SSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             EEEEECCCCceEEEEEECCCCcc-eEcccC---------CCccccceE--CCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            77 77889999999864  3333 333322         245889999  89999888766 589999999873333466


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCC-----------CCEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEE
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~d-----------g~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      .+..|...+..++|+|++++|++++.+           +.|++||+.+++.  +..+.+| ...+..++|+|++++|+++
T Consensus       211 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          211 RITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             ECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEE
T ss_pred             EEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEE
Confidence            777777788999999999999888765           5699999988765  4444466 7789999999999998888


Q ss_pred             eCCC
Q 019405          320 GLDS  323 (341)
Q Consensus       320 ~~dg  323 (341)
                      +.|.
T Consensus       290 ~~~~  293 (297)
T 2ojh_A          290 RYFP  293 (297)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            7664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=1.5e-21  Score=164.88  Aligned_cols=247  Identities=13%  Similarity=0.104  Sum_probs=183.4

Q ss_pred             CCceeEEEeccCCCCCceEEEEcc-------CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .....+++++++.    +|++++.       ++.|.+||..+++.+..+...         .....+.+.+....     
T Consensus        41 ~~~~~~~~s~dg~----~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~~-----  102 (353)
T 3vgz_A           41 KGAYEMAYSQQEN----ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQT-----  102 (353)
T ss_dssp             SSEEEEEEETTTT----EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTTE-----
T ss_pred             cCccceEECCCCC----EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCCE-----
Confidence            4556778887665    6776663       678999999999887777652         22344555444331     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC--------ceEEEEecCCCCEEEEee--CCCeEEEEECC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLD  192 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~d~~v~i~d~~  192 (341)
                        .+++...++.+.+|++....        .+..+......        .+..+.++|+++++++++  .++.|.+||..
T Consensus       103 --l~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A          103 --LWFGNTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             --EEEEETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred             --EEEEecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence              45566667999999975433        33444432221        268899999999877765  47899999999


Q ss_pred             CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcC
Q 019405          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEP  268 (341)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~  268 (341)
                      +++....+....         ..+.+++|  +|+++++++++.++.|.+||..+++. +..+..    +...+..++|+|
T Consensus       173 ~~~~~~~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          173 NIKLKTAIQNTG---------KMSTGLAL--DSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             TTEEEEEECCCC---------TTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEET
T ss_pred             CCceEEEecCCC---------CccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECC
Confidence            998888776332         22667889  89999999999999999999998664 555554    445678899999


Q ss_pred             CCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCceeeee
Q 019405          269 DSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       269 ~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~  339 (341)
                      +++++++++. ++.|.+||+.+++.+..+... .  ...++|+|++++++.++ .++.|.+||+.+++.+..+
T Consensus       241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            9987777665 489999999999998888764 2  26799999999655554 7899999999999887765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=6.1e-22  Score=165.90  Aligned_cols=275  Identities=11%  Similarity=0.032  Sum_probs=181.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcc-hheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDL-RVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~   92 (341)
                      .-+++...++.|.+|++...     ++...+..+.... .++|++++.    +|++++ .++.|.+||+.+++. ...+.
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~-~~~~s~dg~----~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTL-----EILNQITLGYDFV-DTAITSDCS----NVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-----CEEEEEECCCCEE-EEEECSSSC----EEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEEEecCCCeEEEEeCccc-----ceeeeEEccCCcc-eEEEcCCCC----EEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            44678888999999998765     4444444444445 788877665    566555 489999999998887 55554


Q ss_pred             ccCCCCCCCCCCceee-EeeeeccccccccccceeEEEcccc---eeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           93 NAGDSGAQPEDDGIVG-LHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g---~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      ..         ..... +.+.+...        .+++...++   .+.+|++....        .+....  .......+
T Consensus        81 ~~---------~~~~~~~~~s~dg~--------~l~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--~~~~~~~~  133 (331)
T 3u4y_A           81 EG---------QSSMADVDITPDDQ--------FAVTVTGLNHPFNMQSYSFLKNK--------FISTIP--IPYDAVGI  133 (331)
T ss_dssp             EC---------SSCCCCEEECTTSS--------EEEECCCSSSSCEEEEEETTTTE--------EEEEEE--CCTTEEEE
T ss_pred             cC---------CCCccceEECCCCC--------EEEEecCCCCcccEEEEECCCCC--------eEEEEE--CCCCccce
Confidence            42         22233 55544443        566554442   89999975433        333333  34567899


Q ss_pred             EecCCCCEEEEe-eCCCe-EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcC
Q 019405          169 KVDISEKFSLFG-GKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTS  245 (341)
Q Consensus       169 ~~~~~~~~l~~~-~~d~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~  245 (341)
                      +|+|++++++++ ..++. |.+|++.....+......   .  +........++|  +|+++++++ +..++.|++||+.
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~--spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE---F--ISGGTRPFNITF--TPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE---E--ECSSSSEEEEEE--CTTSSEEEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc---c--ccCCCCccceEE--CCCCCEEEEEeCCCCeEEEEECC
Confidence            999999866554 55577 999998754332211100   0  001133678899  899986655 4568999999998


Q ss_pred             CCCc--eeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeE--EeEEecc---cc---CceeEEEecCCCC
Q 019405          246 AQRR--PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK---CS---GSIRSIARHPTLP  314 (341)
Q Consensus       246 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~--~~~~~~~---~~---~~i~~~~~~~~~~  314 (341)
                      +++.  .+..+. ....+..++|+|+|++|++++ .++.|.+||+.+++.  +..+..+   ..   .....++|+|+++
T Consensus       207 ~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  285 (331)
T 3u4y_A          207 NPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET  285 (331)
T ss_dssp             STTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred             CCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence            7653  144454 345678899999999776655 578899999999887  4433321   01   1235589999999


Q ss_pred             EEEEEe-CCCcEEEEEcCCCc
Q 019405          315 IIASCG-LDSYLRFWDIKTRQ  334 (341)
Q Consensus       315 ~l~s~~-~dg~v~iwd~~~~~  334 (341)
                      +|+.++ .++.|.+||+....
T Consensus       286 ~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          286 KLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEecCCCCcEEEEEecCCc
Confidence            876555 56699999998654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=6.4e-22  Score=170.78  Aligned_cols=237  Identities=13%  Similarity=0.020  Sum_probs=173.2

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCC---eEEEeeCCCCcchheeeccCCCCCC
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG---LTDILNPLNGDLRVAISNAGDSGAQ  100 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~  100 (341)
                      +.|++|++...      ....+..|...+..++|++++.    +|++++.++   .|++||+.+++... +..       
T Consensus       159 ~~i~i~d~~g~------~~~~l~~~~~~v~~~~~Spdg~----~la~~s~~~~~~~i~~~d~~tg~~~~-l~~-------  220 (415)
T 2hqs_A          159 YELRVSDYDGY------NQFVVHRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGAVRQ-VAS-------  220 (415)
T ss_dssp             EEEEEEETTSC------SCEEEEEESSCEEEEEECTTSS----EEEEEECTTSSCEEEEEETTTCCEEE-EEC-------
T ss_pred             ceEEEEcCCCC------CCEEEeCCCCcceeeEEcCCCC----EEEEEEecCCCcEEEEEECCCCcEEE-eec-------
Confidence            68888887532      2335556788888888887766    899988875   99999999887643 333       


Q ss_pred             CCCCceeeEeeeeccccccccccceeE-EEcccce--eEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEE
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGK--ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~--~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l  177 (341)
                       +...+.++.|.+...        .|+ +++.++.  +.+|++...         .+... ..+...+.+++|+|++++|
T Consensus       221 -~~~~~~~~~~spdg~--------~la~~~~~~g~~~i~~~d~~~~---------~~~~l-~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          221 -FPRHNGAPAFSPDGS--------KLAFALSKTGSLNLYVMDLASG---------QIRQV-TDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             -CSSCEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTTC---------CEEEC-CCCSSCEEEEEECTTSSEE
T ss_pred             -CCCcccCEEEcCCCC--------EEEEEEecCCCceEEEEECCCC---------CEEeC-cCCCCcccceEECCCCCEE
Confidence             224566666655544        555 6666665  777776432         22222 2345678999999999999


Q ss_pred             EEeeCC-C--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---CeEEEEEcCCCCcee
Q 019405          178 LFGGKG-V--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPV  251 (341)
Q Consensus       178 ~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~  251 (341)
                      ++++.+ +  .|++||+.+++.. .+..+         ...+.+++|  +|++++|++++.+   ..|++||+.+++  .
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~~-~l~~~---------~~~~~~~~~--spdG~~l~~~~~~~g~~~i~~~d~~~~~--~  347 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAPQ-RITWE---------GSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGG--V  347 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCE-ECCCS---------SSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCC--E
T ss_pred             EEEECCCCCcEEEEEECCCCCEE-EEecC---------CCcccCeEE--CCCCCEEEEEECcCCceEEEEEECCCCC--E
Confidence            988764 4  6888899877643 22222         245888999  9999999988764   589999999865  3


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      ..+..+. .+.+++|+|+|++|++++.++   .|++||+. ++....+..| .+.|.+++|+|...
T Consensus       348 ~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          348 QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPYLH  410 (415)
T ss_dssp             EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCCCC
T ss_pred             EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCccccccc
Confidence            4555554 899999999999999888776   79999987 5566778877 89999999999754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=6.9e-21  Score=160.59  Aligned_cols=277  Identities=11%  Similarity=0.055  Sum_probs=177.4

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcc--hheeeccCCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDL--RVAISNAGDS   97 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~--~~~~~~~~~~   97 (341)
                      .++.+.+|.+... +|..+.+... .+......++|++++.    +++++..  ++.|++|++.+++.  +..+..    
T Consensus        14 ~~~~i~v~~~d~~-tg~~~~~~~~-~~~~~p~~~a~spdg~----l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~----   83 (347)
T 3hfq_A           14 TSQGIYQGTLDTT-AKTLTNDGLL-AATQNPTYLALSAKDC----LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA----   83 (347)
T ss_dssp             SCCEEEEEEEETT-TTEEEEEEEE-EECSCCCCEEECTTCE----EEEEEEETTEEEEEEEEEETTEEEEEEEEEE----
T ss_pred             CCCCEEEEEEcCC-CCeEEEeeee-eccCCcceEEEccCCe----EEEEEecCCCceEEEEEecCCcEEEeeeeec----
Confidence            4566888888764 4533332222 3445566788887655    3444332  68999999976653  222222    


Q ss_pred             CCCCCCCceeeEeeeeccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEE
Q 019405           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFS  168 (341)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~  168 (341)
                          +...+..+.+.+...        .++++. .++.+.+|++.....     ...+......        ....+.++
T Consensus        84 ----~~~~p~~~a~spdg~--------~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~  146 (347)
T 3hfq_A           84 ----PGTPPAYVAVDEARQ--------LVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIHYT  146 (347)
T ss_dssp             ----ESCCCSEEEEETTTT--------EEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred             ----CCCCCEEEEECCCCC--------EEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCceEE
Confidence                124455566555444        566665 789999999863211     0122222211        11247889


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECC-CCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEc
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT  244 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~  244 (341)
                      +|+|+++++++...++.|.+|++. +++...  .+....        ...+..++|  +|+++++++ ...++.|++|++
T Consensus       147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~p~~~~~--spdg~~l~v~~~~~~~v~v~~~  216 (347)
T 3hfq_A          147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------GFGPRHLVF--SPDGQYAFLAGELSSQIASLKY  216 (347)
T ss_dssp             EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------CCCCceEEE--CCCCCEEEEEeCCCCEEEEEEe
Confidence            999999976677778899999998 454322  111111        123677899  899996655 567889999998


Q ss_pred             CC--CCc-eeEEEEecC------CCeEEEEEcCCCceEE-EEeCCCCEEEEECC---CCeEEeEEeccccCceeEEEecC
Q 019405          245 SA--QRR-PVMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       245 ~~--~~~-~~~~~~~~~------~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      ..  ++. .+..+....      ..+..++|+|+|++|+ +...++.|.+|++.   ..+.+..+..+ ...+..++|+|
T Consensus       217 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~sp  295 (347)
T 3hfq_A          217 DTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDP  295 (347)
T ss_dssp             ETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECT
T ss_pred             cCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECC
Confidence            85  221 122232222      3478899999999875 45568999999987   23556666665 56789999999


Q ss_pred             CCCEEEEEeCC-CcEEEE--EcCCCcee
Q 019405          312 TLPIIASCGLD-SYLRFW--DIKTRQLL  336 (341)
Q Consensus       312 ~~~~l~s~~~d-g~v~iw--d~~~~~~~  336 (341)
                      +|++|++++.+ +.|.+|  |.++|+..
T Consensus       296 dg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          296 TEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            99988887754 899999  55667654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.3e-21  Score=165.03  Aligned_cols=238  Identities=11%  Similarity=0.054  Sum_probs=168.9

Q ss_pred             CCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (341)
Q Consensus        63 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~  142 (341)
                      +.+.++++++.+++|++||+.+++.+..+...       .......+.+.+....       .+++...++.+.+|++..
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~~-------~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------DKFGPGTAMMAPDNRT-------AYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------SCCSSCEEEECTTSSE-------EEEEETTTTEEEEEETTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecC-------CCCCCceeEECCCCCE-------EEEEeCCCCcEEEEeCCC
Confidence            34458899999999999999998887777642       1113445555443331       445666789999999753


Q ss_pred             cccccccCCceEEEEEeec-----CCceEEEEecCCCCEEEEeeCC------------CeEEEEECCCCceeeecCCCCC
Q 019405          143 TKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       143 ~~~~~~~~~~~v~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      ..        .+......+     ...+..++|+|+++++++++.+            +.|.+||+.+++....+.... 
T Consensus        75 ~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-  145 (349)
T 1jmx_B           75 CK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-  145 (349)
T ss_dssp             TE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-
T ss_pred             Cc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-
Confidence            32        233333222     1236789999999999988865            899999998754332211100 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------------------------
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------------------  258 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------  258 (341)
                            ++..+.+++|  +|+++ +++++.  .|++||..+++. +..+..+.                           
T Consensus       146 ------~~~~~~~~~~--s~dg~-l~~~~~--~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          146 ------MPRQVYLMRA--ADDGS-LYVAGP--DIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             ------CCSSCCCEEE--CTTSC-EEEESS--SEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             ------CCCcccceeE--CCCCc-EEEccC--cEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEee
Confidence                  1133778889  89998 555543  499999987653 33332221                           


Q ss_pred             -----------------------------------------CCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405          259 -----------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       259 -----------------------------------------~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~  296 (341)
                                                               ..+..++|+| ++++++++  ++.|.+||+.+++.+..+
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~  291 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA  291 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence                                                     1345677889 99999888  889999999999988887


Q ss_pred             eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       297 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ...  ..+.+++|+|++++|++++.++.|++||+++++.+.++
T Consensus       292 ~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          292 NLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             ECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             cCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence            753  45789999999998888888999999999999988765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.5e-22  Score=173.93  Aligned_cols=198  Identities=7%  Similarity=-0.029  Sum_probs=142.5

Q ss_pred             eeEEEcccceeEEEEeeeccccccc--CCceEEE----EEeecCCceEEEEecCCCCEEE----EeeCCCeEEEEECCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAES--SCSTVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDLDKC  194 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~--~~~~v~~----~~~~~~~~i~~~~~~~~~~~l~----~~~~d~~v~i~d~~~~  194 (341)
                      .+++++.++ +.+|+..........  ....+..    ....+...|.+++|+|++++|+    +++.|+.|++||++++
T Consensus        50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~  128 (434)
T 2oit_A           50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF  128 (434)
T ss_dssp             EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred             EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence            788887777 888775422111000  0011111    1123456799999999999999    7889999999998754


Q ss_pred             --------ceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEE
Q 019405          195 --------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA  265 (341)
Q Consensus       195 --------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~  265 (341)
                              +.+..+...      ..|...|.+++|  +|+ +.+|++++.||+|++||++++.. +.....|...|.+++
T Consensus       129 ~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~  199 (434)
T 2oit_A          129 SNEAKQQKRPFAYHKLL------KDAGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVTSVC  199 (434)
T ss_dssp             HCTTCSSCCCSEEEECC------CSGGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEEEEE
T ss_pred             ccCCcCCcceeeeeecc------CCCCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCceeEEE
Confidence                    111111111      114467999999  776 78999999999999999998643 555667888999999


Q ss_pred             EcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc------cCceeEEEecCCCCEEEEE-eCCC------cEEEEEcCC
Q 019405          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASC-GLDS------YLRFWDIKT  332 (341)
Q Consensus       266 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~s~-~~dg------~v~iwd~~~  332 (341)
                      |+|+|++|++|+.||.|++||++ ++....+..+.      ...|.+++|++++.++++. +.||      .+++|++..
T Consensus       200 wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          200 WSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             EcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            99999999999999999999998 66655555431      2389999999988877543 3443      389999986


Q ss_pred             C
Q 019405          333 R  333 (341)
Q Consensus       333 ~  333 (341)
                      .
T Consensus       279 ~  279 (434)
T 2oit_A          279 K  279 (434)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=1.6e-21  Score=160.20  Aligned_cols=225  Identities=12%  Similarity=0.055  Sum_probs=162.4

Q ss_pred             EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee-ccccccc
Q 019405           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-TKVSAES  149 (341)
Q Consensus        71 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~-~~~~~~~  149 (341)
                      ++.|++|++||+.+++...... +        ...+.++.+.+...        .++++. ++.+.+|++.. ..     
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~-~--------~~~v~~~~~spdg~--------~l~~~~-~~~i~~~d~~~~~~-----   74 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQ-T--------PELFEAPNWSPDGK--------YLLLNS-EGLLYRLSLAGDPS-----   74 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEE-E--------SSCCEEEEECTTSS--------EEEEEE-TTEEEEEESSSCCS-----
T ss_pred             CCcceeEEEEeCCCCceeeecc-C--------CcceEeeEECCCCC--------EEEEEc-CCeEEEEeCCCCCC-----
Confidence            4578999999998877653332 2        35677777665544        666654 88999999864 32     


Q ss_pred             CCceEEEEEeecCCceEEEEecCCCCEEEEeeC--C--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--G--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                         ...+........+.+++|+|++++|++++.  +  ..|..++..+++. ..+...          ..+..++|  +|
T Consensus        75 ---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~----------~~~~~~~~--sp  138 (297)
T 2ojh_A           75 ---PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN----------LPSYWHGW--SP  138 (297)
T ss_dssp             ---CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS----------SSEEEEEE--CT
T ss_pred             ---ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC----------CCccceEE--CC
Confidence               222222222367888999999999999883  3  3455555555442 222222          23778899  89


Q ss_pred             CCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECC-CCeEEeEEeccccC
Q 019405          226 DHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSG  302 (341)
Q Consensus       226 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~-~~~~~~~~~~~~~~  302 (341)
                      ++++|+ ++..++.+++|++.........+..+...+.+++|+|++++|+.++ .++.+++|++. .+..+..+..+ ..
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  217 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AY  217 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SE
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-Cc
Confidence            999877 7788999999997543333566666778899999999999887666 58999999886 45566667766 67


Q ss_pred             ceeEEEecCCCCEEEEEeCC-----------CcEEEEEcCCCce
Q 019405          303 SIRSIARHPTLPIIASCGLD-----------SYLRFWDIKTRQL  335 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~d-----------g~v~iwd~~~~~~  335 (341)
                      .+..++|+|++++|++++.+           +.|++||+.+++.
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            89999999999999888876           5699999998765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=3e-20  Score=155.58  Aligned_cols=230  Identities=9%  Similarity=-0.010  Sum_probs=164.3

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeeccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKV  145 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~  145 (341)
                      .+++...++.|++||..+++.+..+...        .... .+.+.+...        .++++ ..++.+.+|++.....
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~-~~~~s~dg~--------~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITLG--------YDFV-DTAITSDCS--------NVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECC--------CCEE-EEEECSSSC--------EEEEEESTTCEEEEEECSSSSC
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEcc--------CCcc-eEEEcCCCC--------EEEEEeCCCCeEEEEECCCCce
Confidence            5778889999999999999887776641        2334 555544443        45444 4488999999864331


Q ss_pred             ccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC---eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       146 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                             ....... +..+..+++|+|++++++++..++   .|.+||+.+++.+..+....          ...+++| 
T Consensus        75 -------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~-  135 (331)
T 3u4y_A           75 -------KVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY----------DAVGIAI-  135 (331)
T ss_dssp             -------EEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT----------TEEEEEE-
T ss_pred             -------eEEeccc-CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC----------CccceEE-
Confidence                   1333322 233444499999999999655553   89999999988877665432          2578999 


Q ss_pred             ecCCCCEEEEE-eCCCe-EEEEEcCCCCcee---EEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeE---E
Q 019405          223 SIDDHRKFVAG-TNDHQ-VRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKL---L  293 (341)
Q Consensus       223 ~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~---~  293 (341)
                       +|++++++++ ..++. |.+|++.......   ............++|+|+|++++++ ..++.|++||+.+++.   +
T Consensus       136 -spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~  214 (331)
T 3u4y_A          136 -SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL  214 (331)
T ss_dssp             -CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred             -CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence             8999865554 55578 9999998643311   1122334567899999999866554 4688999999999887   7


Q ss_pred             eEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCce
Q 019405          294 GCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL  335 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~  335 (341)
                      ..+..  ...+..++|+|+|++|+.++ .++.|.+||+.+++.
T Consensus       215 ~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          215 NAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             eeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            77765  46778999999999765554 578899999999877

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=3.1e-19  Score=151.35  Aligned_cols=285  Identities=11%  Similarity=0.047  Sum_probs=179.4

Q ss_pred             ceeeee----cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC----CeEEEeeCCC--
Q 019405           15 LRALTF----DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN--   84 (341)
Q Consensus        15 ~~~~~~----~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d----g~i~iw~~~~--   84 (341)
                      ..++.|    +.++.|.+|.+... +|..+.+...  +......++|+++++    +|++++.+    +.|.+|++..  
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~--~~~~p~~l~~spdg~----~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA--EVANPSYLIPSADGK----FVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE--ECSCCCSEEECTTSS----EEEEEECCSSTTCEEEEEEEETTT
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc--cCCCCceEEECCCCC----EEEEEEccCCCCCcEEEEEEeCCC
Confidence            345555    35678899998765 4544444444  556667788887766    78888775    7999998865  


Q ss_pred             CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee----
Q 019405           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC----  160 (341)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~----  160 (341)
                      ++. ..+....     ........+.+  ...       ..+++...++.+.+|++.......  .  ........    
T Consensus        87 g~~-~~~~~~~-----~~~~~p~~~~~--dg~-------~l~~~~~~~~~v~~~~~~~~g~~~--~--~~~~~~~~g~~~  147 (361)
T 3scy_A           87 GTL-HLLNTQK-----TMGADPCYLTT--NGK-------NIVTANYSGGSITVFPIGQDGALL--P--ASDVIEFKGSGP  147 (361)
T ss_dssp             TEE-EEEEEEE-----CSSSCEEEEEE--CSS-------EEEEEETTTTEEEEEEBCTTSCBC--S--CSEEEECCCCCS
T ss_pred             CcE-EEeeEec-----cCCCCcEEEEE--CCC-------EEEEEECCCCEEEEEEeCCCCcCc--c--cceeEEccCCCC
Confidence            332 2222110     01233444554  222       044444568899999986432111  0  11111111    


Q ss_pred             -----cCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCce------e------eecCCCCCCccCccCCeeeeEEEEE
Q 019405          161 -----ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK------I------WTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       161 -----~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~------~------~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                           ....+.+++|+|++++++++. .++.|.+|++.....      +      ......        ....+..++| 
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~-  218 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA--------PGSGPRHLIF-  218 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC--------TTCCEEEEEE-
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC--------CCCCCeEEEE-
Confidence                 122357899999999766554 478999999875331      1      111111        1133678999 


Q ss_pred             ecCCCCEEEEEe-CCCeEEEEEcCCCCc-eeEEEEe---cCCCeEEEEEcCCCceEEEEeCC--CCEEEEECC--CCe--
Q 019405          223 SIDDHRKFVAGT-NDHQVRLYDTSAQRR-PVMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK--  291 (341)
Q Consensus       223 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~--~~~--  291 (341)
                       +|+++++++++ .++.|.+||+.+++. .+..+..   +......++|+|+|++|+++..+  +.|.+|++.  +++  
T Consensus       219 -spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~  297 (361)
T 3scy_A          219 -NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT  297 (361)
T ss_dssp             -CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred             -cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence             89999887776 689999999986532 1222222   22446799999999998776654  889999985  454  


Q ss_pred             EEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEE--EcCCCceee
Q 019405          292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFW--DIKTRQLLS  337 (341)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iw--d~~~~~~~~  337 (341)
                      .+..+..  ...+..++|+|+|++|++++ .++.|.+|  |.++|+...
T Consensus       298 ~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          298 KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            3444443  35688999999999888887 67899996  555676543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=9.6e-21  Score=175.15  Aligned_cols=278  Identities=8%  Similarity=0.005  Sum_probs=180.0

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEccC---------CeEEEeeCC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARKN---------GLTDILNPL   83 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~d---------g~i~iw~~~   83 (341)
                      +++..+.||.+++|++...     +....+..+..   .+..++||+|++    +|++++.+         +.|.+||+.
T Consensus        29 ~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~~SpDg~----~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           29 EFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYEISPDRE----YALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             CBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEEECTTSS----EEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             cEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEEECCCCC----EEEEEecCccceeecceeeEEEEECC
Confidence            3555578899999988765     33334544543   378888888776    89988764         788999998


Q ss_pred             CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC-
Q 019405           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-  162 (341)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-  162 (341)
                      +++. ..+....     .+...+..+.|.+...        .++.++. +.+.+|++....        ..++...... 
T Consensus       100 ~~~~-~~l~~~~-----~~~~~~~~~~~SPdG~--------~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~  156 (723)
T 1xfd_A          100 HGDP-QSLDPPE-----VSNAKLQYAGWGPKGQ--------QLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEG  156 (723)
T ss_dssp             SCCC-EECCCTT-----CCSCCCSBCCBCSSTT--------CEEEEET-TEEEEESSSSSC--------CEEEECCCBTT
T ss_pred             CCce-EeccCCc-----cccccccccEECCCCC--------EEEEEEC-CeEEEEECCCCc--------eEEEecCCCCC
Confidence            8775 2232210     1222344555544444        6666654 789999876432        2222221111 


Q ss_pred             ----------------CceEEEEecCCCCEEEEeeCCC----------------------------------eEEEEECC
Q 019405          163 ----------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLD  192 (341)
Q Consensus       163 ----------------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~  192 (341)
                                      ..+..++|+|||+.|++++.++                                  .|++||+.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~  236 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence                            1237899999999999887553                                  79999998


Q ss_pred             CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCCCceeEEEEe-cCCCeE----E
Q 019405          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPIK----A  263 (341)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~-~~~~v~----~  263 (341)
                      +++....+..+..   ...+...+..++|  +|+++++++...    +..|++||+.+++. ...+.. +...+.    .
T Consensus       237 ~~~~~~~l~~~~~---~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          237 GPTHDLEMMPPDD---PRMREYYITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             SSCCCEECCCCCC---GGGSSEEEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCC
T ss_pred             CCceeEEeeCCcc---CCCccceeEEEEE--eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCC
Confidence            8775455543311   0112367899999  999998877653    35799999998764 444433 334443    7


Q ss_pred             EEEcCCCceEEE--EeCCC------CEEEEE-CCCCe--EEeEEeccccCceeE-EEecCCCCEEEEEeCC---CcEEEE
Q 019405          264 VAEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGLD---SYLRFW  328 (341)
Q Consensus       264 ~~~~~~~~~l~~--g~~dg------~i~iwd-~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d---g~v~iw  328 (341)
                      ++|+|+|+.|+.  +..++      .|++|| ...++  +...+..+ ...+.. ++|+|+|+.|+..+.+   +.+++|
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            899999987775  44566      577788 34444  14444433 334544 6999999988766555   789999


Q ss_pred             EcCC
Q 019405          329 DIKT  332 (341)
Q Consensus       329 d~~~  332 (341)
                      ++..
T Consensus       390 ~~~~  393 (723)
T 1xfd_A          390 SANT  393 (723)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.3e-19  Score=152.93  Aligned_cols=263  Identities=11%  Similarity=0.017  Sum_probs=179.1

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC-C
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ-P  101 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~  101 (341)
                      +|.|.+|+....     +.+..+.. ......+++++++.   .++++...++.|.+||..+++.+..+......... .
T Consensus        68 ~~~v~~~d~~~~-----~~~~~~~~-~~~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  138 (353)
T 3vgz_A           68 GGVVYRLDPVTL-----EVTQAIHN-DLKPFGATINNTTQ---TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEV  138 (353)
T ss_dssp             SEEEEEECTTTC-----CEEEEEEE-SSCCCSEEEETTTT---EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSC
T ss_pred             CccEEEEcCCCC-----eEEEEEec-CCCcceEEECCCCC---EEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccccc
Confidence            445666665543     34444432 23356677777665   13445566899999999999887777653211000 0


Q ss_pred             CCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405          102 EDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (341)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~  179 (341)
                      ......++.+.+...        .++++.  .++.+.+|++....        .+..+.. ....+..++++|+++++++
T Consensus       139 ~~~~~~~~~~s~dg~--------~l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~-~~~~~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          139 RPLQPRELVADDATN--------TVYISGIGKESVIWVVDGGNIK--------LKTAIQN-TGKMSTGLALDSEGKRLYT  201 (353)
T ss_dssp             CCCEEEEEEEETTTT--------EEEEEEESSSCEEEEEETTTTE--------EEEEECC-CCTTCCCCEEETTTTEEEE
T ss_pred             CCCCCceEEECCCCC--------EEEEEecCCCceEEEEcCCCCc--------eEEEecC-CCCccceEEECCCCCEEEE
Confidence            001244555544444        455544  47889999875332        3333321 3445788999999999999


Q ss_pred             eeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEecC
Q 019405          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRE  258 (341)
Q Consensus       180 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~  258 (341)
                      +..++.|.+||+.+++....+......     +...+..++|  +|+++++++++. ++.|.+||..+++. +..+....
T Consensus       202 ~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~  273 (353)
T 3vgz_A          202 TNADGELITIDTADNKILSRKKLLDDG-----KEHFFINISL--DTARQRAFITDSKAAEVLVVDTRNGNI-LAKVAAPE  273 (353)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEECCCSS-----SCCCEEEEEE--ETTTTEEEEEESSSSEEEEEETTTCCE-EEEEECSS
T ss_pred             EcCCCeEEEEECCCCeEEEEEEcCCCC-----CCcccceEEE--CCCCCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCC
Confidence            999999999999999887766542211     1244778899  889987776654 59999999988764 56665443


Q ss_pred             CCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                        ...++|+|+++++++++ .++.|.+||+.+++.+..+...  ..+.+++|+|++++|+.+..++
T Consensus       274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTSCEEEEEEECC
T ss_pred             --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCCCEEEEEEccc
Confidence              25799999998666555 6899999999999998888764  5789999999999777766553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.1e-20  Score=174.42  Aligned_cols=277  Identities=13%  Similarity=0.048  Sum_probs=177.1

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-----CcchheeeccCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGD   96 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~   96 (341)
                      .++.+.+|++...     ++. .+..+...+..++||++++    +|+++ .|+.|++|++.+     ++..........
T Consensus        99 ~~~~i~~~d~~~~-----~~~-~l~~~~~~~~~~~~SpdG~----~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~  167 (706)
T 2z3z_A           99 TQGGLVGFDMLAR-----KVT-YLFDTNEETASLDFSPVGD----RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE  167 (706)
T ss_dssp             ETTEEEEEETTTT-----EEE-EEECCTTCCTTCEECTTSS----EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred             ECCEEEEEECCCC-----ceE-EccCCcccccCCcCCCCCC----EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC
Confidence            4577788887654     222 2334556677788887766    78885 689999999987     665443322110


Q ss_pred             CC------CCCCCCceeeEeeeeccccccccccceeEEEc---------------------------------ccceeEE
Q 019405           97 SG------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------------------------------TKGKASM  137 (341)
Q Consensus        97 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------~~g~~~i  137 (341)
                      ..      ...+...+.++.|.+...        .|+.++                                 .+..+.+
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~--------~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGS--------CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSS--------EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCC--------EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            00      000001123444444433        666665                                 3355666


Q ss_pred             EEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCcc
Q 019405          138 RSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                      |++....        ...+.. ..+...+..++|+||++.|++++.++     .|++||+.+++....+.......    
T Consensus       240 ~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~----  307 (706)
T 2z3z_A          240 YHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH----  307 (706)
T ss_dssp             EETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS----
T ss_pred             EECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC----
Confidence            6653221        111111 12345688999999999999887775     89999999884333322111000    


Q ss_pred             CCeeeeEEEEEecC--CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeC-CC----CEE
Q 019405          212 TPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNG-SG----DLA  283 (341)
Q Consensus       212 ~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~-dg----~i~  283 (341)
                      ....+..++|  +|  ++++++++..|+.+++|++......+..+..+...+.. ++|+|+++.|+.++. ++    .|+
T Consensus       308 ~~~~~~~~~~--sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          308 YVEPLHPLTF--LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CCCCCSCCEE--CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             eECccCCcee--ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            0012456789  88  99999999999999999887322336677777777877 799999987766554 44    677


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC----CcEEEEEcCCCc
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ  334 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~~  334 (341)
                      .||+.+++ ...+. + ...+.+++|+|+|++|+..+.+    +.|++||+.+++
T Consensus       386 ~~d~~~~~-~~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          386 CIDIKGGK-TKDLT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEETTCCC-CEESC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEcCCCC-ceecc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            77887765 33333 3 5678999999999988776544    469999999876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=1.2e-20  Score=173.96  Aligned_cols=274  Identities=11%  Similarity=0.060  Sum_probs=179.2

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccC--------------CCCCceeEEEeccCCCCCceEEEEccCCeEEEee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--------------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~   81 (341)
                      +++..+.+| | +|++.+... ..+.+.....              +...+..++|+++ .    .++.+ .++.|++||
T Consensus        37 ~~~~~~~~~-i-~~d~~tg~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~----~~~~~-~~~~i~~~d  107 (706)
T 2z3z_A           37 NYVFIEGDD-L-VFNKANGKS-AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G----LVVLF-TQGGLVGFD  107 (706)
T ss_dssp             EEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-T----EEEEE-ETTEEEEEE
T ss_pred             eEEEEeCCc-E-EEECCCCcE-eeEEeechhHhhhhccchhccccccccCceeEEECCC-C----eEEEE-ECCEEEEEE
Confidence            566677777 7 888776521 0012111100              1146888889887 4    45555 469999999


Q ss_pred             CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee-----cccccccCCceEEE
Q 019405           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCSTVKS  156 (341)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~-----~~~~~~~~~~~v~~  156 (341)
                      +.+++.......         ...+..+.|.+...        .++. ..++.+.+|++..     ...        .++
T Consensus       108 ~~~~~~~~l~~~---------~~~~~~~~~SpdG~--------~la~-~~~~~i~v~~~~~~~~~~g~~--------~~~  161 (706)
T 2z3z_A          108 MLARKVTYLFDT---------NEETASLDFSPVGD--------RVAY-VRNHNLYIARGGKLGEGMSRA--------IAV  161 (706)
T ss_dssp             TTTTEEEEEECC---------TTCCTTCEECTTSS--------EEEE-EETTEEEEEECBCTTSCCCCC--------EES
T ss_pred             CCCCceEEccCC---------cccccCCcCCCCCC--------EEEE-EECCeEEEEecCcccccCCCc--------EEe
Confidence            988765433221         13344455544433        5555 4789999999875     321        111


Q ss_pred             EEeec-------------CCceEEEEecCCCCEEEEee---------------------------------CCCeEEEEE
Q 019405          157 WNVCA-------------SGTIAFSKVDISEKFSLFGG---------------------------------KGVEVNVWD  190 (341)
Q Consensus       157 ~~~~~-------------~~~i~~~~~~~~~~~l~~~~---------------------------------~d~~v~i~d  190 (341)
                      .....             ...+.++.|+|||++|++++                                 .+..|++||
T Consensus       162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            11111             11257899999999999987                                 446799999


Q ss_pred             CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEEEcCCCCceeEEEEe-cCC---Ce
Q 019405          191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF-RET---PI  261 (341)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~-~~~---~v  261 (341)
                      +.+++.........       +...+.+++|  +|++++|++++.++     .|++||+.+++........ +..   .+
T Consensus       242 ~~~~~~~~~~~~~~-------~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          242 LATGKTVYLQTGEP-------KEKFLTNLSW--SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             TTTTEEEECCCCSC-------TTCEEEEEEE--CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CCCCceEeeccCCC-------CceeEeeEEE--ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            99887654332211       2356899999  99999999988776     8999999987332222222 222   24


Q ss_pred             EEEEEcC--CCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeE-EEecCCCCEEEEEeC-CC----cEEEEEcCC
Q 019405          262 KAVAEEP--DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGL-DS----YLRFWDIKT  332 (341)
Q Consensus       262 ~~~~~~~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~-dg----~v~iwd~~~  332 (341)
                      ..++|+|  +|+++++++.++.++||++. +++.+..+..+ ...+.. ++|+|+++.|+.++. ++    .|..||+.+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            6789999  99999999999999999876 66777777766 667776 799999997765554 44    677778776


Q ss_pred             Cc
Q 019405          333 RQ  334 (341)
Q Consensus       333 ~~  334 (341)
                      ++
T Consensus       392 ~~  393 (706)
T 2z3z_A          392 GK  393 (706)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.1e-20  Score=171.42  Aligned_cols=242  Identities=7%  Similarity=-0.012  Sum_probs=165.1

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      +..++||+|++    +|++++. +.|++||+.++.  ....+..        +...+..+.|.+...        .++.+
T Consensus       111 v~~~~~SpDg~----~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------~~~~~~~~~~SPDG~--------~la~~  169 (741)
T 2ecf_A          111 IVDYQWSPDAQ----RLLFPLG-GELYLYDLKQEGKAAVRQLTH--------GEGFATDAKLSPKGG--------FVSFI  169 (741)
T ss_dssp             SCCCEECTTSS----EEEEEET-TEEEEEESSSCSTTSCCBCCC--------SSSCEEEEEECTTSS--------EEEEE
T ss_pred             cceeEECCCCC----EEEEEeC-CcEEEEECCCCCcceEEEccc--------CCcccccccCCCCCC--------EEEEE
Confidence            56677777666    8888875 999999998772  2233332        234566666655444        56665


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEeecCC----------------ceEEEEecCCCCEEEEeeCCC---------
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG----------------TIAFSKVDISEKFSLFGGKGV---------  184 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~---------  184 (341)
                      + ++.+.+|++.....        .++.. ....                .+..+.|+|||++|++++.|+         
T Consensus       170 ~-~~~i~~~d~~~g~~--------~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~  239 (741)
T 2ecf_A          170 R-GRNLWVIDLASGRQ--------MQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY  239 (741)
T ss_dssp             E-TTEEEEEETTTTEE--------EECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred             e-CCcEEEEecCCCCE--------EEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence            5 56899998754321        11111 1111                247799999999999987765         


Q ss_pred             ------------------------eEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----
Q 019405          185 ------------------------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----  235 (341)
Q Consensus       185 ------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----  235 (341)
                                              .|++||+.+ ++........       .+...+..++| |  ++++|++++.    
T Consensus       240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~-p--Dg~~l~~~~~~~~~  309 (741)
T 2ecf_A          240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW-R--DPQHLSFQRQSRDQ  309 (741)
T ss_dssp             EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE-E--ETTEEEEEEEETTS
T ss_pred             CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe-C--CCCEEEEEEecccC
Confidence                                    788999987 7654432221       13466888888 5  7888887654    


Q ss_pred             -CCeEEEEEcCCCCceeEEEEecCC----CeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEE-E
Q 019405          236 -DHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-A  308 (341)
Q Consensus       236 -d~~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~-~  308 (341)
                       +..|++||+.+++. ...+..+..    .+..++|+|+|+++++++.||.++||.+. +++ ...+..+ ...+..+ .
T Consensus       310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~  386 (741)
T 2ecf_A          310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLA  386 (741)
T ss_dssp             SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEE
T ss_pred             CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeE
Confidence             56899999998764 455554443    45689999999999999999988887665 345 6667766 6778887 5


Q ss_pred             ecCCCCEEE-EEeCCC--cEEEEEcCC-Cceee
Q 019405          309 RHPTLPIIA-SCGLDS--YLRFWDIKT-RQLLS  337 (341)
Q Consensus       309 ~~~~~~~l~-s~~~dg--~v~iwd~~~-~~~~~  337 (341)
                      |+|+++.|+ +++.++  .++||++.. ++.+.
T Consensus       387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~  419 (741)
T 2ecf_A          387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ  419 (741)
T ss_dssp             EETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred             EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence            999999765 455555  899999864 44333

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.1e-19  Score=152.73  Aligned_cols=230  Identities=11%  Similarity=0.082  Sum_probs=151.8

Q ss_pred             EEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc-ceeEEEEeeeccc
Q 019405           68 LAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIEVTKV  145 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~i~~~~~~~~  145 (341)
                      +++++.|+.|++|++.. ++. ..+...      .+...+.++.+.+...        .+++++.+ +.+.+|++...  
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~spdg~--------~l~~~~~~~~~v~~~~~~~~--   70 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGAL-TLTQVV------DVPGQVQPMVVSPDKR--------YLYVGVRPEFRVLAYRIAPD--   70 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCE-EEEEEE------ECSSCCCCEEECTTSS--------EEEEEETTTTEEEEEEECTT--
T ss_pred             EEeCCCCCeEEEEEECCCCcE-EEeeeE------ecCCCCceEEECCCCC--------EEEEeecCCCeEEEEEecCC--
Confidence            44457899999999853 322 112111      1224555666655444        67766665 99999998621  


Q ss_pred             ccccCCceEE-EEEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC---CCceeeecCCCCCCccCccCCeeeeEEE
Q 019405          146 SAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (341)
Q Consensus       146 ~~~~~~~~v~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (341)
                           .+... +-.......+..++|+|+++++++++. ++.|.+||+.   +.+....+...          ..+.+++
T Consensus        71 -----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~  135 (343)
T 1ri6_A           71 -----DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----------DGCHSAN  135 (343)
T ss_dssp             -----TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC----------TTBCCCE
T ss_pred             -----CCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC----------CCceEEE
Confidence                 11111 222222347889999999998876654 8899999994   33344444332          2377889


Q ss_pred             EEecCCCCEEEEEe-CCCeEEEEEcCC-CCce-eE--EEEe-cCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCC--Ce
Q 019405          221 FLSIDDHRKFVAGT-NDHQVRLYDTSA-QRRP-VM--SFDF-RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT--GK  291 (341)
Q Consensus       221 ~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~-~~--~~~~-~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~--~~  291 (341)
                      |  +|+++++++++ .++.|++||+.+ ++.. +.  .+.. ....+..++|+|+++++++++ .++.|.+||+..  ++
T Consensus       136 ~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          136 I--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  213 (343)
T ss_dssp             E--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             E--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            9  89999888877 899999999987 4321 11  2232 334788899999999776554 789999999953  43


Q ss_pred             E--EeEEecc-----ccCceeEEEecCCCCEEE-EEeCCCcEEEEEcC
Q 019405          292 L--LGCFIGK-----CSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIK  331 (341)
Q Consensus       292 ~--~~~~~~~-----~~~~i~~~~~~~~~~~l~-s~~~dg~v~iwd~~  331 (341)
                      .  ...+...     ....+..++|+|++++|+ +...++.|++||+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            2  2233211     023566899999998776 45578999999998

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=9.7e-21  Score=175.63  Aligned_cols=257  Identities=13%  Similarity=0.044  Sum_probs=175.6

Q ss_pred             CCCceeEEEeccCCCCCceEEEEcc-CC-----eEEEeeCCCCcchheeeccCCCC----CCCC------------CCce
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDSG----AQPE------------DDGI  106 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~----~~~~------------~~~~  106 (341)
                      ...+..++||+|++    +|++++. |+     .|++||+.+++....+..+....    .+..            ...+
T Consensus        36 ~~~~~~~~~SpdG~----~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS----RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTTSS----EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecCCC----EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            45677888887776    8999887 88     89999999887765554421110    0000            0124


Q ss_pred             eeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeE
Q 019405          107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEV  186 (341)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v  186 (341)
                      ..+.|.+...        .+++++. +.+.+|++......      .++.. ..+...+..++|+|||++|+.++. +.|
T Consensus       112 ~~~~~SpDg~--------~l~~~~~-~~i~~~d~~~~~~~------~~~~l-~~~~~~~~~~~~SPDG~~la~~~~-~~i  174 (741)
T 2ecf_A          112 VDYQWSPDAQ--------RLLFPLG-GELYLYDLKQEGKA------AVRQL-THGEGFATDAKLSPKGGFVSFIRG-RNL  174 (741)
T ss_dssp             CCCEECTTSS--------EEEEEET-TEEEEEESSSCSTT------SCCBC-CCSSSCEEEEEECTTSSEEEEEET-TEE
T ss_pred             ceeEECCCCC--------EEEEEeC-CcEEEEECCCCCcc------eEEEc-ccCCcccccccCCCCCCEEEEEeC-CcE
Confidence            4455544443        6666665 99999998654100      11111 123467899999999999998875 589


Q ss_pred             EEEECCCCceeeecCCCCCCccCccCC--------eeeeEEEEEecCCCCEEEEEeCCC---------------------
Q 019405          187 NVWDLDKCEKIWTAKPPPKNSLGIFTP--------TWFTSAAFLSIDDHRKFVAGTNDH---------------------  237 (341)
Q Consensus       187 ~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~~~~~d~---------------------  237 (341)
                      ++||+.+++........... ......        ..+..++|  +|++++|++++.|+                     
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTT-IGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSS-EEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             EEEecCCCCEEEeccCCccc-eeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            99999987765543332210 000000        11467899  99999999988765                     


Q ss_pred             ------------eEEEEEcCC-CCceeEEEE--ecCCCeEEEEEcCCCceEEEEeC-----CCCEEEEECCCCeEEeEEe
Q 019405          238 ------------QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       238 ------------~i~iwd~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~  297 (341)
                                  .|++||+.+ ++. .....  .|...+..++| |+|++|++++.     +..|++||+.+++....+.
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence                        789999987 653 22221  36677899999 99999987654     5679999999998877776


Q ss_pred             ccccC---ceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          298 GKCSG---SIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       298 ~~~~~---~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .+...   .+..++|+|+|+++++++.||.++||.++
T Consensus       330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            65222   45689999999999999999988888765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.1e-19  Score=174.34  Aligned_cols=271  Identities=11%  Similarity=-0.024  Sum_probs=193.1

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      +++++.+|.+++|.+... ++   ....+..+. .+...+|++++.    +|+++ .++.|.+|++...+ +..+.....
T Consensus       217 ~~~~~~dg~~~l~~~~~~-g~---~~~~l~~~~-~~~~~~~SpDG~----~la~~-~~~~i~~~d~~~~~-l~~l~~~~~  285 (1045)
T 1k32_A          217 YFITDIDGFGQIYSTDLD-GK---DLRKHTSFT-DYYPRHLNTDGR----RILFS-KGGSIYIFNPDTEK-IEKIEIGDL  285 (1045)
T ss_dssp             EEEECTTSSCEEEEEETT-SC---SCEECCCCC-SSCEEEEEESSS----CEEEE-ETTEEEEECTTTCC-EEECCCCCC
T ss_pred             EEEEeccCceEEEEEeCC-CC---cceEecCCC-CcceeeEcCCCC----EEEEE-eCCEEEEecCCceE-eeeeccCcc
Confidence            345677889999988754 12   122343443 355668887766    78877 59999999994433 223332100


Q ss_pred             CC---CCCCCCceeeEeee-eccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC-ceEEEEec
Q 019405           97 SG---AQPEDDGIVGLHLF-KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-TIAFSKVD  171 (341)
Q Consensus        97 ~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~-~i~~~~~~  171 (341)
                      ..   ...+...+..+.+. +...        .++.++ ++.+.+|++...         ...... .+.. .+..++|+
T Consensus       286 ~~~~~~~~~~~~v~~~~~S~pdG~--------~la~~~-~~~i~~~~~~~~---------~~~~~~-~~~~~~~~~~~~s  346 (1045)
T 1k32_A          286 ESPEDRIISIPSKFAEDFSPLDGD--------LIAFVS-RGQAFIQDVSGT---------YVLKVP-EPLRIRYVRRGGD  346 (1045)
T ss_dssp             CBCCSEEEECGGGGEEEEEECGGG--------CEEEEE-TTEEEEECTTSS---------BEEECS-CCSCEEEEEECSS
T ss_pred             cccccccccccccceeeecCCCCC--------EEEEEE-cCEEEEEcCCCC---------ceEEcc-CCCcceEEeeeEc
Confidence            00   00012346666665 4444        566665 788888886432         222221 2344 78899999


Q ss_pred             CCCCEEEEeeCCCeEE-EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 ISEKFSLFGGKGVEVN-VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                       +++.+++++.++.+. +||+.+++... +..+         ...+..++|  +|++++|++++.++.|++||+.+++. 
T Consensus       347 -dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~---------~~~~~~~~~--SpDG~~la~~~~~~~v~~~d~~tg~~-  412 (1045)
T 1k32_A          347 -TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN---------LGNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKP-  412 (1045)
T ss_dssp             -SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC---------CCSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred             -CCCeEEEEECCCceEEEEECCCCCceE-ecCC---------ccceeeeEE--CCCCCEEEEECCCCeEEEEECCCCce-
Confidence             999999988888898 99998765433 2222         245889999  99999999999999999999998764 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCC----------CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSG----------DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ......|...+..++|+|+|++|++++.++          .|++||+.+++ +..+..| ...+..++|+|+|++|+.++
T Consensus       413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-NSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-SSBEEEEEECTTSCEEEEEE
T ss_pred             EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-CcccCCceEcCCCCEEEEEe
Confidence            555667888899999999999998887654          89999999887 5666666 77889999999999999999


Q ss_pred             CCCcEEEEEcCCC
Q 019405          321 LDSYLRFWDIKTR  333 (341)
Q Consensus       321 ~dg~v~iwd~~~~  333 (341)
                      .++...+|+....
T Consensus       491 ~~~~~~~~~~~~~  503 (1045)
T 1k32_A          491 YRSLDPSPDRVVL  503 (1045)
T ss_dssp             SCCCCCEECSSSS
T ss_pred             cccCCcCcchhcc
Confidence            9888888886544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=5.3e-21  Score=172.51  Aligned_cols=239  Identities=12%  Similarity=-0.001  Sum_probs=168.5

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      ...++..++|++|++    +||+++. ||+++||++++++.. .+..+       +...+....|.+. .        .+
T Consensus        20 ~~~~~~~~~~~~DG~----~la~~s~~~g~~~lw~~~~g~~~-~lt~~-------~~~~~~~~~~spd-~--------~l   78 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGD----KLLVVGFSEGSVNAYLYDGGETV-KLNRE-------PINSVLDPHYGVG-R--------VI   78 (582)
T ss_dssp             HHSCEEEEEEEETTT----EEEEEEEETTEEEEEEEETTEEE-ECCSS-------CCSEECEECTTCS-E--------EE
T ss_pred             hccchheeecCCCCC----eEEEEEccCCceeEEEEcCCCcE-eeecc-------cccccccccCCCC-e--------EE
Confidence            356789999998877    7988776 999999998655443 33321       1124444554432 3        66


Q ss_pred             EEEcc---cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC--EEEEeeCCCeEEEEECCCCceeeecC
Q 019405          127 LTCTT---KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       127 ~~~~~---~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~  201 (341)
                      +++..   +....+|.+....      ++...  .......+...+|+|+++  .+++++.+ .+.+||+.+++......
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~------~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~  149 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSR------PGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR  149 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTS------TTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE
T ss_pred             EEeccCCCCcceEEEEEeccC------CCccc--cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec
Confidence            66654   4455777765411      11111  112223344567777775  34444444 55699998886554332


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~  277 (341)
                      .+          .  .+++|  +|+|++|++++.+    +.|++||+.+++  ...+..|...+..++|+|||+.|+++.
T Consensus       150 ~~----------~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          150 LP----------G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             ES----------S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             CC----------C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEcc
Confidence            21          1  56788  8999999988877    789999998765  456777888899999999999999888


Q ss_pred             CCC--CEEEEECCCCeEEeEEeccccCceeEEE--------ecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          278 GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       278 ~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      .++  .|++||+.+++.. .+..+ ...+..++        |+|||.++++++.|+.+++|++  |+.+
T Consensus       214 ~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             CCCeeEEEEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            888  8999999998887 66665 66777777        9999999999999999999999  6655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=4.8e-20  Score=154.49  Aligned_cols=233  Identities=12%  Similarity=0.087  Sum_probs=166.7

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCC-ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      ++|++++.++.|++||+.+++.+..+...       ... .+..+.+.+....       .+++...++.+.+|++....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~-------l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIA-------DAGPTPMVPMVAPGGRI-------AYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT-------TCTTCCCCEEECTTSSE-------EEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcC-------CCCCCccceEEcCCCCE-------EEEEeCCCCeEEEEECCCCC
Confidence            47899999999999999998887776642       101 2445555444431       45666778999999975432


Q ss_pred             cccccCCceEEEEEeec----CCceEEEEecCCCCEEEEee------------CCCeEEEEECCCCceeeecCCCCCCcc
Q 019405          145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~~~  208 (341)
                              .+..+....    ...+..++|+|++++++++.            .++.|.+||+.+++....+...     
T Consensus        68 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----  134 (337)
T 1pby_B           68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----  134 (337)
T ss_dssp             --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred             --------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----
Confidence                    333343322    12567889999999988886            5789999999988877666542     


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--------
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------  280 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--------  280 (341)
                           ..+.+++|  +|++++|+++  ++.|++||+.+++. +..+..+.. ...+.|+|++..++..+..+        
T Consensus       135 -----~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~  203 (337)
T 1pby_B          135 -----RQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY  203 (337)
T ss_dssp             -----SSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred             -----CCcceeEE--CCCCCEEEEe--CCeEEEEECCCCcE-eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeee
Confidence                 22667888  8999988887  68899999998653 555544331 11337899998776554332        


Q ss_pred             ----------------CEEEEECCCCeEE-eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 ----------------DLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ----------------~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                                      .|.+||+.+++.. ..+..+ ...+.+++|+|++++++++  ++.|++||+.+++.+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence                            4689999998775 223333 5678899999999998888  789999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.4e-21  Score=169.36  Aligned_cols=170  Identities=10%  Similarity=0.048  Sum_probs=130.6

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC------CCccCccCCeeeeEEEEEecCCCCEEE----E
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFV----A  232 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~----~  232 (341)
                      ..+..+++++++.++++++.++ +++|+..............      .....+.+...|.+++|  +|++++|+    +
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMS  113 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEec
Confidence            3577889999999999999887 8998764211100000000      00011223456999999  89999999    7


Q ss_pred             EeCCCeEEEEEcCCC-----C--ce---eEEEEecCCCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEecccc
Q 019405          233 GTNDHQVRLYDTSAQ-----R--RP---VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       233 ~~~d~~i~iwd~~~~-----~--~~---~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      ++.|+.|++||+.+.     +  .+   +..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+....+| .
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~  192 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T  192 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence            888999999998753     1  11   3444568899999999998 789999999999999999999877777776 8


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                      ..|++++|+|+|++|++++.||.|++||++ ++...
T Consensus       193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~  227 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK  227 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred             CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc
Confidence            899999999999999999999999999998 54443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=9.9e-19  Score=148.42  Aligned_cols=283  Identities=12%  Similarity=0.020  Sum_probs=175.2

Q ss_pred             eeeeecCC--CCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC-CCcchhee
Q 019405           16 RALTFDSL--GLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAI   91 (341)
Q Consensus        16 ~~~~~~~~--g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~   91 (341)
                      .++.|+..  +.|.++++... +|..+.+.... ........+++++++.    +|++++.+ .|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~~~~~~~~~a~spdg~----~l~~~~~~-~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEPISWMTFDHERK----NIYGAAMK-KWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCCCSEEEECTTSS----EEEEEEBT-EEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccCCCCCCcEEEECCCCC----EEEEEccc-eEEEEEECCCCCEEEee
Confidence            34555432  45777777543 35333332221 2234566788887766    78888877 99999997 66654332


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccce-e-EEEc-------------ccceeEEEEeeecccccccCCceEEE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-L-LTCT-------------TKGKASMRSIEVTKVSAESSCSTVKS  156 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~-------------~~g~~~i~~~~~~~~~~~~~~~~v~~  156 (341)
                      ...       ..+....+.+ .+++.       . + +++.             .+|.+.+|+++....    ....+..
T Consensus        78 ~~~-------~~g~~~~~~~-spdg~-------~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~~  138 (365)
T 1jof_A           78 SHP-------IGGHPRANDA-DTNTR-------AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQN  138 (365)
T ss_dssp             EEE-------CCSSGGGGCT-TSCCE-------EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEEE
T ss_pred             Eee-------cCCCCccEEE-CCCCC-------EEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEee
Confidence            210       0011222222 22221       2 2 2332             588899999863110    0012223


Q ss_pred             EEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECC-CCceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          157 WNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      +...+...+.+++|+|+|++++++.. ++.|++||+. +++...  .+....       +...+..++|  +|+++++++
T Consensus       139 ~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~--spdg~~l~v  209 (365)
T 1jof_A          139 YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLYA  209 (365)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEEE
T ss_pred             EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEE--CCCCCEEEE
Confidence            32234567899999999998887654 6799999998 665432  222110       1134788999  899999887


Q ss_pred             EeC-CCeEEEEEcC--CCCce--eEEEEe-------cCC------CeEEEE-EcCCCceEEEEeCCC------CEEEEEC
Q 019405          233 GTN-DHQVRLYDTS--AQRRP--VMSFDF-------RET------PIKAVA-EEPDSFNIYIGNGSG------DLASVDI  287 (341)
Q Consensus       233 ~~~-d~~i~iwd~~--~~~~~--~~~~~~-------~~~------~v~~~~-~~~~~~~l~~g~~dg------~i~iwd~  287 (341)
                      ++. ++.|.+|++.  +++..  ...+..       |..      .+..++ |+|+|++|++++.+.      .|.+|++
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence            764 7899999876  33321  112221       121      478899 999999988776432      7999999


Q ss_pred             C-CCeEEeE---EeccccCceeEEEecC---CCCEEEEEeCC-CcEEEEEcCCC
Q 019405          288 R-TGKLLGC---FIGKCSGSIRSIARHP---TLPIIASCGLD-SYLRFWDIKTR  333 (341)
Q Consensus       288 ~-~~~~~~~---~~~~~~~~i~~~~~~~---~~~~l~s~~~d-g~v~iwd~~~~  333 (341)
                      . ++++...   ...+ ...+..++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       290 ~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          290 RDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            6 6665432   3333 45677899999   89999988865 89999998765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=3e-19  Score=171.28  Aligned_cols=242  Identities=12%  Similarity=0.099  Sum_probs=180.5

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCC-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      .+.+|...+..++|+.+ .    +++++..|+.++||.+.. +.....+..+         ..+....+ ++++.     
T Consensus       198 ~l~~~~~~v~~~~~s~d-~----l~~~~~~dg~~~l~~~~~~g~~~~~l~~~---------~~~~~~~~-SpDG~-----  257 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-R----IYFITDIDGFGQIYSTDLDGKDLRKHTSF---------TDYYPRHL-NTDGR-----  257 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-E----EEEEECTTSSCEEEEEETTSCSCEECCCC---------CSSCEEEE-EESSS-----
T ss_pred             ECcCCCCcccceEEeCC-E----EEEEEeccCceEEEEEeCCCCcceEecCC---------CCcceeeE-cCCCC-----
Confidence            44678899999999865 3    577788899999997653 3333333332         22333444 34331     


Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEE----------eecCCceEEEEec-CCCCEEEEeeCCCeEEEEEC
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----------VCASGTIAFSKVD-ISEKFSLFGGKGVEVNVWDL  191 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~----------~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~i~d~  191 (341)
                        .++.+ .++.+.+|++...         .+..+.          ..+...+..++|+ |+++.+++++ ++.|.+|++
T Consensus       258 --~la~~-~~~~i~~~d~~~~---------~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          258 --RILFS-KGGSIYIFNPDTE---------KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             --CEEEE-ETTEEEEECTTTC---------CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             --EEEEE-eCCEEEEecCCce---------EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence              55555 5899999987211         111111          1123468899999 9999999887 779999999


Q ss_pred             CCCceeeecCCCCCCccCccCCe-eeeEEEEEecCCCCEEEEEeCCCeEE-EEEcCCCCceeEEEEecCCCeEEEEEcCC
Q 019405          192 DKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVR-LYDTSAQRRPVMSFDFRETPIKAVAEEPD  269 (341)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  269 (341)
                      .+++... +..+.         . .+..++|  + +++.|+.++.+..+. +||+..++  ...+..|...+..++|+|+
T Consensus       325 ~~~~~~~-~~~~~---------~~~~~~~~~--s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpD  389 (1045)
T 1k32_A          325 SGTYVLK-VPEPL---------RIRYVRRGG--D-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRN  389 (1045)
T ss_dssp             TSSBEEE-CSCCS---------CEEEEEECS--S-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTT
T ss_pred             CCCceEE-ccCCC---------cceEEeeeE--c-CCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCC
Confidence            8776543 33322         3 5888999  8 999999988888888 99988754  3444467788999999999


Q ss_pred             CceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC----------cEEEEEcCCCc
Q 019405          270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----------YLRFWDIKTRQ  334 (341)
Q Consensus       270 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----------~v~iwd~~~~~  334 (341)
                      |++|++++.++.|++||+.+++....+..| ...+..++|+|||++|++++.++          .|++||+.+++
T Consensus       390 G~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          390 GKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            999999999999999999999988777777 88899999999999998887654          89999999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.2e-20  Score=172.73  Aligned_cols=252  Identities=8%  Similarity=-0.060  Sum_probs=167.5

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ...++|++++.    ++++ +.||+|++||+.+++....+..+..     ....+.++.+.+...        .++.++.
T Consensus        19 ~~~~~~spdg~----~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~-----~~~~v~~~~~SpDg~--------~l~~~~~   80 (723)
T 1xfd_A           19 DPEAKWISDTE----FIYR-EQKGTVRLWNVETNTSTVLIEGKKI-----ESLRAIRYEISPDRE--------YALFSYN   80 (723)
T ss_dssp             CCCCCBSSSSC----BCCC-CSSSCEEEBCGGGCCCEEEECTTTT-----TTTTCSEEEECTTSS--------EEEEEES
T ss_pred             ccccEEcCCCc----EEEE-eCCCCEEEEECCCCcEEEEeccccc-----cccccceEEECCCCC--------EEEEEec
Confidence            44556666555    6665 7899999999999887666654311     001356666655544        6777765


Q ss_pred             c---------ceeEEEEeeecccccccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          132 K---------GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       132 ~---------g~~~i~~~~~~~~~~~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                      +         +.+.+|++....         .+....  .+...+..++|+|||+.|+.++. +.|++||+.+++.....
T Consensus        81 ~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           81 VEPIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             CCCCSSSCCCSEEEEEESSSCC---------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred             CccceeecceeeEEEEECCCCc---------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence            4         677788875432         111111  11223778999999999999886 69999999987765544


Q ss_pred             CCCCCCccCccCC---------eeeeEEEEEecCCCCEEEEEeCCC----------------------------------
Q 019405          201 KPPPKNSLGIFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------  237 (341)
Q Consensus       201 ~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~d~----------------------------------  237 (341)
                      ..+........++         ..+.+++|  +|++++|++++.|+                                  
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence            4322110000000         12378899  99999999987553                                  


Q ss_pred             eEEEEEcCCCCceeEEEEec------CCCeEEEEEcCCCceEEEEeC----CCCEEEEECCCCeEEeEEeccccCcee--
Q 019405          238 QVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR--  305 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~i~--  305 (341)
                      .|++||+.+++. ...+..+      ...+..++|+|||++|++...    +..|++||+.+++....+..++...+.  
T Consensus       229 ~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          229 SLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ  307 (723)
T ss_dssp             EEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             EEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence            799999988653 3445443      457889999999998877653    356999999999877666544344443  


Q ss_pred             --EEEecCCCCEEEE--EeCCC------cEEEEE-cCCCc
Q 019405          306 --SIARHPTLPIIAS--CGLDS------YLRFWD-IKTRQ  334 (341)
Q Consensus       306 --~~~~~~~~~~l~s--~~~dg------~v~iwd-~~~~~  334 (341)
                        .++|+|||+.|+.  +..|+      .|.+|| ..+++
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence              8899999997765  45666      577777 34443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=2.7e-19  Score=161.40  Aligned_cols=255  Identities=11%  Similarity=0.022  Sum_probs=170.1

Q ss_pred             eeeecC-CCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceEEEEcc---CCeEEEeeCCC---Ccch
Q 019405           17 ALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN---GDLR   88 (341)
Q Consensus        17 ~~~~~~-~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l~~~~~---dg~i~iw~~~~---~~~~   88 (341)
                      ++.++. +|.+++|.+..   |  +. .++..+. ..+..++|++|     +++++++.   +...+||.+..   +...
T Consensus        36 la~~s~~~g~~~lw~~~~---g--~~-~~lt~~~~~~~~~~~~spd-----~~l~~~~~~~g~~~~~l~~~~~~~~g~~~  104 (582)
T 3o4h_A           36 LLVVGFSEGSVNAYLYDG---G--ET-VKLNREPINSVLDPHYGVG-----RVILVRDVSKGAEQHALFKVNTSRPGEEQ  104 (582)
T ss_dssp             EEEEEEETTEEEEEEEET---T--EE-EECCSSCCSEECEECTTCS-----EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred             EEEEEccCCceeEEEEcC---C--Cc-EeeecccccccccccCCCC-----eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence            343343 78889999743   3  22 2344444 56776777655     36776664   45566665432   2221


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                       .+...         .......+.+..+.       .+++...++...+|+++...        ..++...  ..  ..+
T Consensus       105 -~l~~~---------~~~~~~~~s~dg~~-------~~~~s~~~~~~~l~d~~~g~--------~~~l~~~--~~--~~~  155 (582)
T 3o4h_A          105 -RLEAV---------KPMRILSGVDTGEA-------VVFTGATEDRVALYALDGGG--------LRELARL--PG--FGF  155 (582)
T ss_dssp             -ECTTS---------CSBEEEEEEECSSC-------EEEEEECSSCEEEEEEETTE--------EEEEEEE--SS--CEE
T ss_pred             -cccCC---------CCceeeeeCCCCCe-------EEEEecCCCCceEEEccCCc--------EEEeecC--CC--ceE
Confidence             22211         12223344333321       44555555556699886433        2223222  22  788


Q ss_pred             EecCCCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eEEEE
Q 019405          169 KVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLY  242 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i~iw  242 (341)
                      +|+|||++|++++.+    +.|++||+.+++.. .+..+         ...+..++|  +|||++|+++..++  .|++|
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~---------~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG---------EGSFSSASI--SPGMKVTAGLETAREARLVTV  223 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS---------SCEEEEEEE--CTTSCEEEEEECSSCEEEEEE
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC---------CCccccceE--CCCCCEEEEccCCCeeEEEEE
Confidence            999999999988777    78999999887654 34333         255889999  99999999888888  89999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEE--------EcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      |+.+++. . .+..|...+..++        |+|+|.++++++.++.+++|++  ++.+.   .. .+.+.+++|+ +++
T Consensus       224 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-dg~  294 (582)
T 3o4h_A          224 DPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-RGK  294 (582)
T ss_dssp             CTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-TTE
T ss_pred             cCCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-CCE
Confidence            9998664 4 5666766676677        9999988899999999999999  76655   22 4678999999 999


Q ss_pred             EEEEEeCCC---cEEEEEcCC
Q 019405          315 IIASCGLDS---YLRFWDIKT  332 (341)
Q Consensus       315 ~l~s~~~dg---~v~iwd~~~  332 (341)
                      ++++++.+.   .+.+||..+
T Consensus       295 ~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          295 LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTCC
T ss_pred             EEEEEcCCCCCCeEEEEcCCC
Confidence            888888775   466666653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=3e-17  Score=138.27  Aligned_cols=252  Identities=12%  Similarity=0.101  Sum_probs=156.1

Q ss_pred             eeeecC---CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchheee
Q 019405           17 ALTFDS---LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        17 ~~~~~~---~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~   92 (341)
                      +++.+.   ++.|.+|++...   ..+.+..+..+...+..++|++++.    +|++++ .++.|++|++........+.
T Consensus        53 l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spdg~----~l~~~~~~~~~v~v~~~~~~g~~~~~~  125 (347)
T 3hfq_A           53 LYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEARQ----LVYSANYHKGTAEVMKIAADGALTLTD  125 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETTTT----EEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCCCC----EEEEEeCCCCEEEEEEeCCCCCeeecc
Confidence            444443   578888888543   2234444444666778889988776    777776 78999999996322222222


Q ss_pred             ccCCCCCC----CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           93 NAGDSGAQ----PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        93 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      ........    .....+.++.+.+...        .+++...++.+.+|++.....     -..+.............+
T Consensus       126 ~~~~~~~~p~~~~~~~~~~~~~~spdg~--------l~v~~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~g~~p~~~  192 (347)
T 3hfq_A          126 TVQHSGHGPRPEQDGSHIHYTDLTPDNR--------LAVIDLGSDKVYVYNVSDAGQ-----LSEQSVLTMEAGFGPRHL  192 (347)
T ss_dssp             EEECCCCCSSTTCSSCCEEEEEECTTSC--------EEEEETTTTEEEEEEECTTSC-----EEEEEEEECCTTCCEEEE
T ss_pred             eeecCCCCCCccccCCCceEEEECCCCc--------EEEEeCCCCEEEEEEECCCCc-----EEEeeeEEcCCCCCCceE
Confidence            11100000    0122344555544333        667777788999999862110     011222233334467889


Q ss_pred             EecCCCCEEEE-eeCCCeEEEEECCC--Cce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEE
Q 019405          169 KVDISEKFSLF-GGKGVEVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLY  242 (341)
Q Consensus       169 ~~~~~~~~l~~-~~~d~~v~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iw  242 (341)
                      +|+|+++++++ ...++.|.+|++..  ++.  ...+......   ......+..++|  +|++++|+ +...++.|.+|
T Consensus       193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~i~~--spdG~~l~v~~~~~~~v~v~  267 (347)
T 3hfq_A          193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---YTAHNGAAAIRL--SHDGHFLYVSNRGYNTLAVF  267 (347)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT---CCSCCEEEEEEE--CTTSCEEEEEEETTTEEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC---CCCCCcceeEEE--CCCCCEEEEEeCCCCEEEEE
Confidence            99999996665 56688999999874  432  1222211110   011245788999  99999774 55568999999


Q ss_pred             EcCCCC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCC-CCEEEE--ECCCCeEE
Q 019405          243 DTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASV--DIRTGKLL  293 (341)
Q Consensus       243 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iw--d~~~~~~~  293 (341)
                      ++....  ..+..+..+...+..++|+|+|++|++++.+ +.|.+|  |..++++.
T Consensus       268 ~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          268 AVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            987321  2344555556678899999999988888764 889999  55667654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=5e-17  Score=136.80  Aligned_cols=250  Identities=9%  Similarity=0.055  Sum_probs=165.9

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCC-CCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ..+++++.++.|.+|++...     ++...+..+. .....+++++++.    ++ +++..++.|.+||+.+++.+..+.
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~----~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPGTAMMAPDNR----TAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSCEEEECTTSS----EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCCeEEEEECCCC-----cEEEEEecCCCCCCceeEECCCCC----EEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            44677888999999998765     4554553332 2456777876664    44 556678999999999888776665


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc------------ceeEEEEeeecccccccCCceEEEEEee
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK------------GKASMRSIEVTKVSAESSCSTVKSWNVC  160 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------g~~~i~~~~~~~~~~~~~~~~v~~~~~~  160 (341)
                      ......  .....+..+.+.+...        .++++..+            +.+.+|++......     ..+..+.  
T Consensus        83 ~~~~~~--~~~~~~~~~~~spdg~--------~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~--  145 (349)
T 1jmx_B           83 LSSVPG--EVGRSMYSFAISPDGK--------EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-----KPVRTFP--  145 (349)
T ss_dssp             SCCSTT--EEEECSSCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-----CCSEEEE--
T ss_pred             cccccc--cccccccceEECCCCC--------EEEEEcccccccccccccCCCeEEEEECCCcccc-----ceeeecc--
Confidence            311000  0011234455544443        66666654            89999998653311     1233333  


Q ss_pred             cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc--------------------------Ccc---
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL--------------------------GIF---  211 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~--------------------------~~~---  211 (341)
                      ....+.+++|+|+++ +++++.  .|.+||+.+++....+........                          ...   
T Consensus       146 ~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          146 MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            234678899999999 555543  499999999887766543320000                          000   


Q ss_pred             ------------------------------CCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 019405          212 ------------------------------TPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (341)
Q Consensus       212 ------------------------------~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (341)
                                                    ....+..++|  +| ++++++++  ++.|.+||+.+++. +..+.. ...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--sp~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~~-~~~  296 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR--SPKDPNQIYGV--LNRLAKYDLKQRKL-IKAANL-DHT  296 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE--CSSCTTEEEEE--ESEEEEEETTTTEE-EEEEEC-SSC
T ss_pred             cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEe--cCCCCCEEEEE--cCeEEEEECccCeE-EEEEcC-CCC
Confidence                                          0012445666  78 99998888  88999999998653 555553 345


Q ss_pred             eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc
Q 019405          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       261 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      +.+++|+|++++|++++.++.|++||+.+++.+..++.+
T Consensus       297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          297 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            779999999999988888999999999999998887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=5.9e-16  Score=131.11  Aligned_cols=271  Identities=10%  Similarity=0.030  Sum_probs=161.6

Q ss_pred             eeeecCC----CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchhee
Q 019405           17 ALTFDSL----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        17 ~~~~~~~----g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~   91 (341)
                      +++++.+    |.+.+|++... +|..+.+.....+......+++  ++    ++|+++. .++.|.+|++.....+..+
T Consensus        64 l~~~~~~~~~~~~v~~~~~~~~-~g~~~~~~~~~~~~~~p~~~~~--dg----~~l~~~~~~~~~v~~~~~~~~g~~~~~  136 (361)
T 3scy_A           64 VYSVNEFSKDQAAVSAFAFDKE-KGTLHLLNTQKTMGADPCYLTT--NG----KNIVTANYSGGSITVFPIGQDGALLPA  136 (361)
T ss_dssp             EEEEECCSSTTCEEEEEEEETT-TTEEEEEEEEECSSSCEEEEEE--CS----SEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred             EEEEEccCCCCCcEEEEEEeCC-CCcEEEeeEeccCCCCcEEEEE--CC----CEEEEEECCCCEEEEEEeCCCCcCccc
Confidence            5555554    78888988764 3433444444334444555555  33    3566655 6899999999754433322


Q ss_pred             ec---cCC---CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccC-Cc---eEEEEEeec
Q 019405           92 SN---AGD---SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS-CS---TVKSWNVCA  161 (341)
Q Consensus        92 ~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~-~~---~v~~~~~~~  161 (341)
                      ..   +..   .........+.++.+.+....       .+++...++.+.+|+++......... -.   .........
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (361)
T 3scy_A          137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP  209 (361)
T ss_dssp             SEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred             ceeEEccCCCCCccccCCCcceEEEECCCCCE-------EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence            11   110   000011223344555444331       34445558899999986432100000 00   112334444


Q ss_pred             CCceEEEEecCCCCEEEEee-CCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--
Q 019405          162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--  236 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--  236 (341)
                      ......++|+|++++++++. .++.|.+||+.+++.  +..+.....      +......++|  +|++++|+++..+  
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~------~~~~~~~i~~--spdg~~l~v~~~~~~  281 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV------NAQGSGDIHL--SPDGKYLYASNRLKA  281 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS------CCCCEEEEEE--CTTSSEEEEEECSSS
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC------CCCCcccEEE--CCCCCEEEEECCCCC
Confidence            56678999999999887776 689999999987644  222222111      1133578899  9999988776654  


Q ss_pred             CeEEEEEcC--CCCc-eeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEE--ECCCCeEEeEEeccccCceeEEEec
Q 019405          237 HQVRLYDTS--AQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       237 ~~i~iwd~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      +.|.+|++.  +++. .+..+.. ...+..++|+|+|++|++++ .++.|.+|  |..++++.......+...+.++.|.
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            899999996  3331 2333433 45678999999999888887 56889995  5567776554322224568888885

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.81  E-value=1.7e-16  Score=129.90  Aligned_cols=248  Identities=10%  Similarity=0.109  Sum_probs=167.7

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      .....+++++++.    ++++...++.|.+||.. ++.+..+.....  ...+...+..+++.+..+        .++.+
T Consensus        30 ~~p~~v~~~~~g~----l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~~~~~p~~i~~~~~~g--------~l~v~   94 (286)
T 1q7f_A           30 TEPSGVAVNAQND----IIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDSQLLYPNRVAVVRNSG--------DIIVT   94 (286)
T ss_dssp             SCEEEEEECTTCC----EEEEEGGGTEEEEECTT-SCEEEEECCBSS--STTCBSSEEEEEEETTTT--------EEEEE
T ss_pred             CCCceEEECCCCC----EEEEECCCCEEEEECCC-CcEEEEecccCC--CcccccCceEEEEEcCCC--------eEEEE
Confidence            4456677765544    77777889999999986 555544432110  001223455565533333        44444


Q ss_pred             c-c-cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405          130 T-T-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       130 ~-~-~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      . . ++.+.+|+..         ...+..+.......+..++++++++++++...++.|.+||.. ++....+....   
T Consensus        95 ~~~~~~~i~~~d~~---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---  161 (286)
T 1q7f_A           95 ERSPTHQIQIYNQY---------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK---  161 (286)
T ss_dssp             ECGGGCEEEEECTT---------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT---
T ss_pred             cCCCCCEEEEECCC---------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC---
Confidence            4 3 7888888732         113334433333568899999999988887788999999964 55555443211   


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCC-CEEE
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLAS  284 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg-~i~i  284 (341)
                          +...+..+++  +++++++++...++.|++||... +. +..+..+  ...+..++++|+|+++++...++ .|.+
T Consensus       162 ----~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          162 ----HLEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  233 (286)
T ss_dssp             ----TCSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             ----ccCCcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence                1134788999  88898888878899999999754 32 5555433  25688999999998888887776 9999


Q ss_pred             EECCCCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          285 VDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      ||. +++.+..+..+. ...+.+++++|+|+++++ +.|+.|++|++....+
T Consensus       234 ~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          234 FTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             ECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             ECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            995 567777776541 224779999999987777 6799999999876544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1e-18  Score=161.48  Aligned_cols=280  Identities=10%  Similarity=-0.016  Sum_probs=172.7

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCC---CceeEEEeccCCCCCceEEEEcc---------CCeEEEeeCC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQNDPLLAVARK---------NGLTDILNPL   83 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~l~~~~~---------dg~i~iw~~~   83 (341)
                      +++..+.||.|++|++...     +....+..+..   .+..++||+|++    +|++++.         ++.|++||+.
T Consensus        28 ~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~SpDg~----~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           28 EYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNYGLSPDRQ----FVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             EEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeEEECCCCC----eEEEEecCceeEEeecceEEEEEECC
Confidence            5666777999999998775     33333433322   377788887766    8888876         7899999999


Q ss_pred             CCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce-EEEEEeecC
Q 019405           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCAS  162 (341)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~-v~~~~~~~~  162 (341)
                      +++.+.....         ...+..+.|.+...        .++.+ .++.+.+|++.......-..++. ..+++. +.
T Consensus        99 ~g~~~~~~~l---------~~~~~~~~~SPDG~--------~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g-~~  159 (719)
T 1z68_A           99 NGEFVRGNEL---------PRPIQYLCWSPVGS--------KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNG-IP  159 (719)
T ss_dssp             TTEECCSSCC---------CSSBCCEEECSSTT--------CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEES-SC
T ss_pred             CCccccceec---------CcccccceECCCCC--------EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcc-cc
Confidence            8876311111         02344455544444        56655 47899999986443211000000 001110 00


Q ss_pred             ---------CceEEEEecCCCCEEEEeeCCC----------------------------------eEEEEECCCCcee--
Q 019405          163 ---------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI--  197 (341)
Q Consensus       163 ---------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~v~i~d~~~~~~~--  197 (341)
                               .....++|+|||++|++++.|.                                  .|++||+.+++..  
T Consensus       160 ~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~  239 (719)
T 1z68_A          160 DWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP  239 (719)
T ss_dssp             CHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred             cceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence                     1124899999999999987652                                  7889999887642  


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEE----cCCCCceeEEE----EecCCCeE---
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK---  262 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~~----~~~~~~v~---  262 (341)
                      ..+..+.  . ...+...+..++|  +|+++++++....    ..|.+||    ..+++. ...+    ..|...+.   
T Consensus       240 ~~~~~~~--~-~~~~~~~~~~~~~--SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~  313 (719)
T 1z68_A          240 QEVPVPA--M-IASSDYYFSWLTW--VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGGFF  313 (719)
T ss_dssp             EECCCCH--H-HHTSCEEEEEEEE--SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSSSS
T ss_pred             eEccCCc--c-CCCCcceEEEeEE--eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEcccc
Confidence            1121100  0 0113467899999  8898777664432    2488899    666442 2222    35666666   


Q ss_pred             --EEEEcCCCceEEE--EeCCC--CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcC
Q 019405          263 --AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIK  331 (341)
Q Consensus       263 --~~~~~~~~~~l~~--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~  331 (341)
                        .+.|+|+|+.|+.  ...+|  .|++||+.+++ ...+..+ ...+..+.++ +++.|+..+.+     +..++|.+.
T Consensus       314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence              7899999986654  44555  47777887766 3345444 5567787777 77776666554     788899875


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      .
T Consensus       391 ~  391 (719)
T 1z68_A          391 I  391 (719)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=165.96  Aligned_cols=249  Identities=7%  Similarity=-0.075  Sum_probs=160.6

Q ss_pred             eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--
Q 019405           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--  131 (341)
Q Consensus        54 ~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--  131 (341)
                      .++|++++.    +++ .+.|++|++||+.+++....+..+...     ...+.++.+.+...        .++.++.  
T Consensus        20 ~~~~s~dg~----~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg~--------~la~~~~~~   81 (719)
T 1z68_A           20 FPNWISGQE----YLH-QSADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDRQ--------FVYLESDYS   81 (719)
T ss_dssp             CCEESSSSE----EEE-ECTTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTSS--------EEEEEEEEE
T ss_pred             ccEECCCCe----EEE-EcCCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCCC--------eEEEEecCc
Confidence            445665553    444 456999999999998876655542100     01245555555444        6776665  


Q ss_pred             -------cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          132 -------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       132 -------~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                             ++.+.+|++.......   .   .  .+  ...+..++|+|||+.|+.+. ++.|++||+.+++.........
T Consensus        82 ~~~~~s~~~~i~~~d~~~g~~~~---~---~--~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           82 KLWRYSYTATYYIYDLSNGEFVR---G---N--EL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECC---S---S--CC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             eeEEeecceEEEEEECCCCcccc---c---e--ec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence                   6889999875443200   0   0  01  24578899999999999885 6799999998877654322211


Q ss_pred             CCccCccCCeee---------eEEEEEecCCCCEEEEEeCCC----------------------------------eEEE
Q 019405          205 KNSLGIFTPTWF---------TSAAFLSIDDHRKFVAGTNDH----------------------------------QVRL  241 (341)
Q Consensus       205 ~~~~~~~~~~~v---------~~~~~~~~~~~~~l~~~~~d~----------------------------------~i~i  241 (341)
                      ....-..++.++         .+++|  +|||++|++++.|.                                  .|++
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            110000111222         57899  99999999987652                                  7889


Q ss_pred             EEcCCCCce--eE-----EEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEE----CCCCeEEeEE----eccccC
Q 019405          242 YDTSAQRRP--VM-----SFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSG  302 (341)
Q Consensus       242 wd~~~~~~~--~~-----~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd----~~~~~~~~~~----~~~~~~  302 (341)
                      ||+.+++..  +.     .+..|...+..++|+||++++++....    ..|++||    +.+++....+    ..+ ..
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~  307 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TG  307 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SS
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-Cc
Confidence            999875431  11     122466778999999998877764432    2488999    8888776555    344 66


Q ss_pred             cee-----EEEecCCCCEEEE--EeCCC--cEEEEEcCCCc
Q 019405          303 SIR-----SIARHPTLPIIAS--CGLDS--YLRFWDIKTRQ  334 (341)
Q Consensus       303 ~i~-----~~~~~~~~~~l~s--~~~dg--~v~iwd~~~~~  334 (341)
                      .+.     .+.|+|+|+.|+.  ...+|  .|.+||+.+++
T Consensus       308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence            676     8899999996544  44555  57777877655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=1.5e-17  Score=153.96  Aligned_cols=254  Identities=7%  Similarity=-0.034  Sum_probs=158.5

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      ....++|++++.    +|+++  |++|++||+.+++....+..+......   .......+ +++++       .++.++
T Consensus        18 ~~~~~~w~~dg~----~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-Spdg~-------~l~~~~   80 (740)
T 4a5s_A           18 KLYSLRWISDHE----YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG---HSINDYSI-SPDGQ-------FILLEY   80 (740)
T ss_dssp             CCCCEEECSSSE----EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC---SCCCEEEE-CTTSS-------EEEEEE
T ss_pred             cccccEECCCCc----EEEEc--CCcEEEEECCCCceEEEEechhhhhhc---ccccceEE-CCCCC-------EEEEEE
Confidence            344567776654    77776  999999999999876666654321110   11111333 33332       666666


Q ss_pred             cc---------ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405          131 TK---------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       131 ~~---------g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  201 (341)
                      .+         +.+.+|++.....         ... ..+...+...+|+|||+.||.+. ++.|++||+.+++..+...
T Consensus        81 ~~~~~~r~~~~~~~~~~d~~~~~~---------~~l-~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A           81 NYVKQWRHSYTASYDIYDLNKRQL---------ITE-ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEE---------CCS-SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred             CCeeeEEEccceEEEEEECCCCcE---------EEc-ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC
Confidence            54         5556888754331         111 12345788999999999999874 6799999998876543222


Q ss_pred             CCCCCccCccCCee---------eeEEEEEecCCCCEEEEEeCCC-----------------------------------
Q 019405          202 PPPKNSLGIFTPTW---------FTSAAFLSIDDHRKFVAGTNDH-----------------------------------  237 (341)
Q Consensus       202 ~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~~~~~d~-----------------------------------  237 (341)
                      .......-..++.+         ...+.|  +|||++|+..+.|.                                   
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             CCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence            11111000011111         234789  99999999875332                                   


Q ss_pred             -eEEEEEcCC---CCc-eeEEEEe------cCCCeEEEEEcCCCceEEEEeC----CCCEEEEECCCCe----EE--eEE
Q 019405          238 -QVRLYDTSA---QRR-PVMSFDF------RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF  296 (341)
Q Consensus       238 -~i~iwd~~~---~~~-~~~~~~~------~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~----~~--~~~  296 (341)
                       .|++||+.+   ++. ....+..      |...+..++|+|||+.++....    +..|++||+.+++    +.  ..+
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence             578899887   631 1333432      6667899999999986665432    3369999999887    22  222


Q ss_pred             --eccccCcee-----EEEecCCCCEEE-EEeC-CC--cEEEEEcCCCce
Q 019405          297 --IGKCSGSIR-----SIARHPTLPIIA-SCGL-DS--YLRFWDIKTRQL  335 (341)
Q Consensus       297 --~~~~~~~i~-----~~~~~~~~~~l~-s~~~-dg--~v~iwd~~~~~~  335 (341)
                        ..+ ...|.     .++|+|||+.|+ ..+. +|  .|++||+.+++.
T Consensus       308 ~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          308 IEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             eeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence              333 55554     789999999776 6653 44  688889887654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=4.2e-16  Score=131.75  Aligned_cols=277  Identities=10%  Similarity=0.019  Sum_probs=174.8

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchhee
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~   91 (341)
                      .|+.+.+|+....     +++.++..+..+  .++|+++++    +|+++.          .++.|.+||..+++.+.++
T Consensus        29 ~d~~v~v~D~~t~-----~~~~~i~~g~~p--~i~~spdg~----~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i   97 (361)
T 2oiz_A           29 TESRVHVYDYTNG-----KFLGMVPTAFNG--HVQVSNDGK----KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI   97 (361)
T ss_dssp             GGCEEEEEETTTC-----CEEEEEECCEEE--EEEECTTSS----EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred             ccCeEEEEECCCC-----eEEEEecCCCCC--ceEECCCCC----EEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence            3678889886554     555566554444  678887766    787775          3678999999988888777


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  169 (341)
                      ...... + ........+.+.+..+        .++++..  ++.+.+|++....        .+... +...+ ...+.
T Consensus        98 ~~~~~~-~-~~g~~p~~i~~spdg~--------~l~v~n~~~~~~v~v~d~~~~~--------~~~~~-i~~~~-~~~v~  157 (361)
T 2oiz_A           98 SLPPKR-V-QGLNYDGLFRQTTDGK--------FIVLQNASPATSIGIVDVAKGD--------YVEDV-TAAAG-CWSVI  157 (361)
T ss_dssp             EECTTB-C-CBCCCGGGEEECTTSS--------EEEEEEESSSEEEEEEETTTTE--------EEEEE-GGGTT-EEEEE
T ss_pred             EcCccc-c-ccCCCcceEEECCCCC--------EEEEECCCCCCeEEEEECCCCc--------EEEEE-ecCCC-cceeE
Confidence            642100 0 0112333444444433        6666653  5789999875432        22210 21222 22245


Q ss_pred             ecCCC-CEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC
Q 019405          170 VDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (341)
Q Consensus       170 ~~~~~-~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  247 (341)
                      +.|++ ..+++.+.||.+.+|++.. ++.........  .+.. ...++ .+.+  .+++..++..+.++.|.++|+...
T Consensus       158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~--~~~~-~~~~~-~~~~--~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ--MFSV-KDDPI-FIAP--ALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC--CSCT-TTSCB-CSCC--EECSSEEEEEBTTSEEEEEECSSS
T ss_pred             EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc--eEcC-CCCce-EEEe--cccCCEEEEEeCCCeEEEEEecCC
Confidence            56655 6777888899999999865 44431111000  0000 00111 1222  456667777778999999998764


Q ss_pred             Ccee-EEEEec------C----CCeEEEEEcCCCceEEEEeC-----------CCCEEEEECCCCeEEeEEeccccCcee
Q 019405          248 RRPV-MSFDFR------E----TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       248 ~~~~-~~~~~~------~----~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~  305 (341)
                      ...+ ..+...      .    .....++|+|++..++++..           .+.|.+||+.+++.+.++..+ .  +.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~  308 (361)
T 2oiz_A          232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--AL  308 (361)
T ss_dssp             SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CC
T ss_pred             CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--ee
Confidence            4211 122110      0    11123789999888777643           347999999999999999987 4  99


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcCCC--ceeeee
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAV  339 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~  339 (341)
                      +++|+|+|++|++++. +.|.+||..++  +.+.++
T Consensus       309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9999999999998887 99999999999  888775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1.9e-16  Score=132.28  Aligned_cols=253  Identities=9%  Similarity=-0.001  Sum_probs=171.1

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccC------------------------CeEEEeeCCCCcchheeeccCCCCCCCCCC
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKN------------------------GLTDILNPLNGDLRVAISNAGDSGAQPEDD  104 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  104 (341)
                      -..+..+++++++.    ++++...+                        ++|.+||..+++.+..+..       ....
T Consensus        23 l~~v~~va~d~~G~----l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------~~~~   91 (329)
T 3fvz_A           23 PGQVSGVALDSKNN----LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-------NLFY   91 (329)
T ss_dssp             CSCEEEEEECTTCC----EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-------TTCS
T ss_pred             cCCceEEEECCCCC----EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-------CccC
Confidence            35577778776655    66666655                        4799999988887654432       1223


Q ss_pred             ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE--------eecCCceEEEEecC-CCC
Q 019405          105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--------VCASGTIAFSKVDI-SEK  175 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~--------~~~~~~i~~~~~~~-~~~  175 (341)
                      ....+++-+...        .+++...++.+.+|+.+...       ..+..+.        ..+-.....++++| ++.
T Consensus        92 ~p~gia~d~~g~--------l~v~d~~~~~v~~~~~~g~~-------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           92 LPHGLSIDTDGN--------YWVTDVALHQVFKLDPHSKE-------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             SEEEEEECTTSC--------EEEEETTTTEEEEECTTCSS-------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred             CceEEEECCCCC--------EEEEECCCCEEEEEeCCCCe-------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence            455565543333        77777778999999864221       0122221        01123578999999 788


Q ss_pred             EEEEee-CCCeEEEEECCCCceeeecCCCCCCc-cCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          176 FSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       176 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      ++++.+ .++.|++|| .+++.+..+....... ....+-.....+++  +|+ +.++++...++.|++||..+++. +.
T Consensus       157 lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~--d~~~g~l~v~d~~~~~I~~~~~~~G~~-~~  232 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL--VPHLDQLCVADRENGRIQCFKTDTKEF-VR  232 (329)
T ss_dssp             EEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE--ETTTTEEEEEETTTTEEEEEETTTCCE-EE
T ss_pred             EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE--ECCCCEEEEEECCCCEEEEEECCCCcE-EE
Confidence            888876 689999999 5666666554221100 00001134788999  787 77777888899999999986654 55


Q ss_pred             EEE--ecCCCeEEEEEcC------CCceEEEEeCCCCEEEEECCCCeEEeEEe---ccccCceeEEEecCCCCEEEEEeC
Q 019405          253 SFD--FRETPIKAVAEEP------DSFNIYIGNGSGDLASVDIRTGKLLGCFI---GKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       253 ~~~--~~~~~v~~~~~~~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      .+.  .+...+..++++|      ++...++...+..|++||..+++.+..+.   .+ ......++++|+|.++++...
T Consensus       233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESS
T ss_pred             EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECC
Confidence            553  2456788999999      33322233345589999999999998874   44 567899999999988888889


Q ss_pred             CCcEEEEEcCC
Q 019405          322 DSYLRFWDIKT  332 (341)
Q Consensus       322 dg~v~iwd~~~  332 (341)
                      ++.|++|++..
T Consensus       312 ~~~I~~~~~~~  322 (329)
T 3fvz_A          312 TNTVWKFTLTE  322 (329)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCEEEEEeCCc
Confidence            99999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.6e-15  Score=129.66  Aligned_cols=246  Identities=8%  Similarity=-0.054  Sum_probs=145.6

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEee-eecccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHL-FKRQREESSSRS  123 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  123 (341)
                      ...+...+...+|++++.    +|+.+..++.|++||+.+++....+..+        ........+ .+++..      
T Consensus        76 t~~~~~~~~~~~~spdg~----~l~~~~~~~~l~~~d~~~g~~~~~~~~~--------~~~~~~~~~~~~~dg~------  137 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDD----ALFYVKDGRNLMRVDLATLEENVVYQVP--------AEWVGYGTWVANSDCT------  137 (388)
T ss_dssp             CCSSCBCSSSCEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECC--------TTEEEEEEEEECTTSS------
T ss_pred             eeCCCCCccceEEcCCCC----EEEEEeCCCeEEEEECCCCcceeeeech--------hhcccccceeECCCCC------
Confidence            333444444556776665    8999998999999999988765544431        121211222 122221      


Q ss_pred             ceeEE----------------------EcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEe
Q 019405          124 RTLLT----------------------CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG  180 (341)
Q Consensus       124 ~~l~~----------------------~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~  180 (341)
                       .++.                      ...+..+.+|++...         .++... .+...+..+.|+| +++.|+..
T Consensus       138 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---------~~~~l~-~~~~~~~~~~~sp~dg~~l~~~  206 (388)
T 3pe7_A          138 -KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---------ESTVIL-QENQWLGHPIYRPYDDSTVAFC  206 (388)
T ss_dssp             -EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC---------CEEEEE-EESSCEEEEEEETTEEEEEEEE
T ss_pred             -eeccccccCcccccccccchhhhhhccCCcceEEEEECCCC---------ceEEee-cCCccccccEECCCCCCEEEEE
Confidence             2221                      122355666665322         222222 2345688999999 99988877


Q ss_pred             eCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC----eEEEEEcCCCCc
Q 019405          181 GKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH----QVRLYDTSAQRR  249 (341)
Q Consensus       181 ~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~----~i~iwd~~~~~~  249 (341)
                      ..+      ..|.++|...++.. .+.....       ...+..++|  +|+++.|+..+. ++    .|++||+.+++.
T Consensus       207 ~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          207 HEGPHDLVDARMWLINEDGTNMR-KVKTHAE-------GESCTHEFW--VPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             ECSCTTTSSCSEEEEETTSCCCE-ESCCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             EecCCCCCcceEEEEeCCCCceE-EeeeCCC-------CcccccceE--CCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            653      37888887655433 2322210       134777889  899997765443 22    399999998763


Q ss_pred             e-eEEEEecCC---CeEEEEEcCCCceEEEE---------eCCCCEEEEECCCCeEEeEEeccccC-----------cee
Q 019405          250 P-VMSFDFRET---PIKAVAEEPDSFNIYIG---------NGSGDLASVDIRTGKLLGCFIGKCSG-----------SIR  305 (341)
Q Consensus       250 ~-~~~~~~~~~---~v~~~~~~~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~i~  305 (341)
                      . +..+..+..   ....+.|+|+|+.|+..         ..+..|++||+.+++.. .+..+ ..           .+.
T Consensus       277 ~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~  354 (388)
T 3pe7_A          277 RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARH-DTSWKVFEGDRQVTHP  354 (388)
T ss_dssp             EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEEC-CCCCCCBTTBSSTTCC
T ss_pred             EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eeccc-cCcccccccccccCCC
Confidence            1 222221100   01123799999888754         44668999999988764 34444 33           478


Q ss_pred             EEEecCCCCEEEEEe-CCCcEEEEEcC
Q 019405          306 SIARHPTLPIIASCG-LDSYLRFWDIK  331 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~-~dg~v~iwd~~  331 (341)
                      .++|+|||+.|+..+ .++...||.++
T Consensus       355 ~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          355 HPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CccCCCCCCEEEEEecCCCceeEEEEE
Confidence            899999999777655 56766666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=9.7e-16  Score=140.28  Aligned_cols=252  Identities=13%  Similarity=0.016  Sum_probs=159.4

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEE--ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCcee---------eEeee-
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV---------GLHLF-  112 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-  112 (341)
                      +.+|...+..++++.+..    +++..  ..++...||....+.....+..+.        ..+.         ...+. 
T Consensus        19 ~~~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~   86 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEV----WWVAPRPAEAGRATLVRRRADGAEESALPAP--------WNVRNRVFEYSGFPWAGVP   86 (662)
T ss_dssp             HHHTCSCCEEEEEETTEE----EEEEEETTTTTEEEEEEECTTSCEEESSCTT--------CCBCCCGGGTCCCCEEEEC
T ss_pred             HhhcCCccceeEEcCCeE----EEEecCcccCCcEEEEEECCCCCcceeCCCC--------ccccccccccCCccceeee
Confidence            445777888888885433    56666  558899999864443333343321        1111         22233 


Q ss_pred             eccccccccccce-eEEEcccceeEEEEeeecccccccCCceEEEEEe-e---cCCceEEEEecCCCCEEEEeeCC----
Q 019405          113 KRQREESSSRSRT-LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-C---ASGTIAFSKVDISEKFSLFGGKG----  183 (341)
Q Consensus       113 ~~~~~~~~~~~~~-l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-~---~~~~i~~~~~~~~~~~l~~~~~d----  183 (341)
                      +++++       . ++.+. +....||.++...  .+  .+..+.... .   +...+..++|+|||+.|++++.+    
T Consensus        87 SPDg~-------~~la~~~-~~~~~l~~~~~~~--~g--~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~  154 (662)
T 3azo_A           87 RPAGG-------PLLVFTH-FGDQRLYAFEPDA--PG--GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE  154 (662)
T ss_dssp             CSSSS-------CEEEEEB-TTTCCEEEECTTS--TT--CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             ecCCC-------eEEEEEE-CCCCeEEEEcCCC--CC--CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC
Confidence            13331       5 44443 3344455543220  00  011111111 1   23467789999999999988876    


Q ss_pred             ------CeEEEEECCC------CceeeecC-CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEEE
Q 019405          184 ------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLY  242 (341)
Q Consensus       184 ------~~v~i~d~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~iw  242 (341)
                            ..|++||+.+      ++.. .+. .+         ...+..++|  +|||++|+..+.+        ..|++|
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~  222 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTA  222 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred             CCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence                  5899999987      4433 333 21         245778899  9999999987755        379999


Q ss_pred             EcC-CCC--ceeEEEEecCCCeEEEEEcCCCceEEEEeCCC--CEEEEECCCCeEEeEEeccccCc--------eeEEEe
Q 019405          243 DTS-AQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGCFIGKCSGS--------IRSIAR  309 (341)
Q Consensus       243 d~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~--------i~~~~~  309 (341)
                      |+. ++.  ........+...+..++|+|+|++++++..++  .|++||+.+++.......+ ...        +..++|
T Consensus       223 d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~~~~  301 (662)
T 3azo_A          223 RVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRWFAP  301 (662)
T ss_dssp             EECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCSEEE
T ss_pred             EECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCceEeE
Confidence            998 451  32333444567899999999999888888888  6777777677655444332 222        567899


Q ss_pred             cCCCCEEEEEeCCCcEEEE--EcCCCc
Q 019405          310 HPTLPIIASCGLDSYLRFW--DIKTRQ  334 (341)
Q Consensus       310 ~~~~~~l~s~~~dg~v~iw--d~~~~~  334 (341)
                      +|++.++++++. +.++||  |+.+++
T Consensus       302 ~~~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          302 LANGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             CTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             eCCCEEEEEEEc-CccEEEEEECCCCc
Confidence            999999999998 999999  555554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=6.9e-15  Score=124.70  Aligned_cols=241  Identities=12%  Similarity=0.021  Sum_probs=148.0

Q ss_pred             eEEEEccC--CeEEEeeC--CCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee-
Q 019405           67 LLAVARKN--GLTDILNP--LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE-  141 (341)
Q Consensus        67 ~l~~~~~d--g~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~-  141 (341)
                      +|++|+..  +.|.+|++  .+++... +.... .   .....+..+.+.+...        .+++++.+ .+.+|++. 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~-~~~~~-~---~~~~~~~~~a~spdg~--------~l~~~~~~-~v~~~~~~~   69 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKL-IKRTE-I---PQDEPISWMTFDHERK--------NIYGAAMK-KWSSFAVKS   69 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEE-EEEEE-C---CTTCCCSEEEECTTSS--------EEEEEEBT-EEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEE-eeEEc-c---CCCCCCcEEEECCCCC--------EEEEEccc-eEEEEEECC
Confidence            35666553  56887765  4454321 21100 0   0112344555544433        67777777 89999986 


Q ss_pred             ecccccccCCceEEEEEeecCCceEEEEecCCCCE--EEEee-------------CCCeEEEEECC-CCceeeecCCCCC
Q 019405          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGG-------------KGVEVNVWDLD-KCEKIWTAKPPPK  205 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~d~~v~i~d~~-~~~~~~~~~~~~~  205 (341)
                      ...        ...+......+....++++|++++  ++++.             .++.+.+|++. +++....+.....
T Consensus        70 ~g~--------~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~  141 (365)
T 1jof_A           70 PTE--------IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY  141 (365)
T ss_dssp             TTE--------EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred             CCC--------EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence            221        222222221233556889999994  55553             68999999997 4554332221000


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcC-CCCce-eEEEEe--cCCCeEEEEEcCCCceEEEEeC-C
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTS-AQRRP-VMSFDF--RETPIKAVAEEPDSFNIYIGNG-S  279 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~g~~-d  279 (341)
                           .+...+.+++|  +|++++|+++.. ++.|++||+. +++.. +..+..  |...+..++|+|+|++|++++. +
T Consensus       142 -----~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  214 (365)
T 1jof_A          142 -----QENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             -----CTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             -----CCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC
Confidence                 01234888999  899998887654 6899999998 55431 223331  3566899999999999888775 6


Q ss_pred             CCEEEEECC--CCeEEe---EEecc------ccC------ceeEEE-ecCCCCEEEEEeCCC------cEEEEEcC-CCc
Q 019405          280 GDLASVDIR--TGKLLG---CFIGK------CSG------SIRSIA-RHPTLPIIASCGLDS------YLRFWDIK-TRQ  334 (341)
Q Consensus       280 g~i~iwd~~--~~~~~~---~~~~~------~~~------~i~~~~-~~~~~~~l~s~~~dg------~v~iwd~~-~~~  334 (341)
                      +.|.+|++.  ++++..   .+...      +..      .+..++ |+|+|++|++++.+.      .|.+|++. +|+
T Consensus       215 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence            889999765  565432   22211      011      588999 999999887766432      89999996 566


Q ss_pred             ee
Q 019405          335 LL  336 (341)
Q Consensus       335 ~~  336 (341)
                      ..
T Consensus       295 ~~  296 (365)
T 1jof_A          295 IE  296 (365)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=8e-15  Score=118.95  Aligned_cols=238  Identities=8%  Similarity=-0.032  Sum_probs=166.4

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      +++|++++.|+.|.+||.++|+.+.++..+.       .....++.+.+...        .++  +.++.+..++. ..+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~pdG~--------ilv--s~~~~V~~~d~-~G~   66 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEK-------GWECNSVAATKAGE--------ILF--SYSKGAKMITR-DGR   66 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCT-------TCCCCEEEECTTSC--------EEE--ECBSEEEEECT-TSC
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCc-------cCCCcCeEECCCCC--------EEE--eCCCCEEEECC-CCC
Confidence            4689999999999999999999998887631       01233444433322        444  34666777764 211


Q ss_pred             cccccCCceEEEEEeecC--CceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE
Q 019405          145 VSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (341)
                                .+|.....  ..+.++.+.++|+++++.+. ++.|..+|. +++.++.+.......   .+......+++
T Consensus        67 ----------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---~~~~~~~~v~~  132 (276)
T 3no2_A           67 ----------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---RPHAQFRQINK  132 (276)
T ss_dssp             ----------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---SGGGSCSCCEE
T ss_pred             ----------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---cccccccCceE
Confidence                      34554432  46888899999999999887 778888886 677777665322100   01123445566


Q ss_pred             EecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-
Q 019405          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-  300 (341)
Q Consensus       222 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-  300 (341)
                        .++++++++...++.|..||.. ++. +..+... ....++...+++..++++..++.|..+|..+|+.+.++.... 
T Consensus       133 --~~~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~  207 (276)
T 3no2_A          133 --NKKGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI  207 (276)
T ss_dssp             --CTTSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred             --CCCCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence              7899999999999999999988 664 6777654 345677888999999998888899999999999999887431 


Q ss_pred             ----cCceeEEEecCCCCEEEEEeCC--------CcEEEEEc-CCCceeeee
Q 019405          301 ----SGSIRSIARHPTLPIIASCGLD--------SYLRFWDI-KTRQLLSAV  339 (341)
Q Consensus       301 ----~~~i~~~~~~~~~~~l~s~~~d--------g~v~iwd~-~~~~~~~~~  339 (341)
                          ...+..++..++|.++++....        +..+++.+ .+|+.+.++
T Consensus       208 ~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          208 EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence                1237888899999988887421        23456655 467766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=1.2e-14  Score=121.23  Aligned_cols=265  Identities=8%  Similarity=-0.049  Sum_probs=172.2

Q ss_pred             CCCCeEEEEEecCccCccceeeec-c---C--CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERW-G---D--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~-~---~--~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .++.|.+++....     ++...+ .   .  .......+++.  +   +.++++...++.|.+||..+++.+.++... 
T Consensus        15 ~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~--~---~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-   83 (328)
T 3dsm_A           15 SNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR--D---GIGWIVVNNSHVIFAIDINTFKEVGRITGF-   83 (328)
T ss_dssp             CCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE--T---TEEEEEEGGGTEEEEEETTTCCEEEEEECC-
T ss_pred             CCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE--C---CEEEEEEcCCCEEEEEECcccEEEEEcCCC-
Confidence            4788888887765     333222 0   0  11122334442  2   235666677899999999999988877531 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecC----CceEEEEec
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVD  171 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~----~~i~~~~~~  171 (341)
                              .....+++.+...        .+++...++.+.++|.....        .+..+.....    .....+++ 
T Consensus        84 --------~~p~~i~~~~~g~--------lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~-  138 (328)
T 3dsm_A           84 --------TSPRYIHFLSDEK--------AYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ-  138 (328)
T ss_dssp             --------SSEEEEEEEETTE--------EEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-
T ss_pred             --------CCCcEEEEeCCCe--------EEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-
Confidence                    3445555433322        44444478999999875332        2223332210    03445666 


Q ss_pred             CCCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----------CeEE
Q 019405          172 ISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR  240 (341)
Q Consensus       172 ~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------~~i~  240 (341)
                      .++.++++.. .++.|.++|+.+++....+....          ....+++  ++++++++++..+          +.|.
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~----------~p~~i~~--~~dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI----------QPTSLVM--DKYNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS----------CBCCCEE--CTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC----------CccceEE--cCCCCEEEEECCCccCCccccCCceEE
Confidence            3344444433 48899999999998877665421          2456788  8888877776554          7899


Q ss_pred             EEEcCCCCceeEEEEec-CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE--EeccccCceeEEEecC-CCCEE
Q 019405          241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII  316 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l  316 (341)
                      ++|..+++. ...+... ......++++|+++.|+++..  .|.+||..+++....  +... ......++++| ++.++
T Consensus       207 ~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly  282 (328)
T 3dsm_A          207 RIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY  282 (328)
T ss_dssp             EEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred             EEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence            999987653 4455432 236789999999999888765  899999998876421  2211 35688999999 55566


Q ss_pred             EEE----eCCCcEEEEEcCCCceeeee
Q 019405          317 ASC----GLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       317 ~s~----~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++.    ..++.|.+||.. |+.+.++
T Consensus       283 va~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          283 VADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EEcccccccCCEEEEECCC-CCEEEEE
Confidence            666    578899999998 9988876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=1.2e-15  Score=130.38  Aligned_cols=235  Identities=10%  Similarity=0.010  Sum_probs=147.6

Q ss_pred             CCCCCceEEEEcc-CC--eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEE
Q 019405           61 DSQNDPLLAVARK-NG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (341)
Q Consensus        61 ~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i  137 (341)
                      .+|+|++|+.++. ++  .|.+||+.+++.......+        ...+....|.+...        .|+.+..++.+.+
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~--------~~~~~~~~~spdg~--------~l~~~~~~~~l~~  106 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR--------GDNTFGGFLSPDDD--------ALFYVKDGRNLMR  106 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS--------CBCSSSCEECTTSS--------EEEEEETTTEEEE
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC--------CCCccceEEcCCCC--------EEEEEeCCCeEEE
Confidence            3445558888876 66  4888899887765444332        12222334444444        7888888889999


Q ss_pred             EEeeecccccccCCceEEEEEeecCCceEE--EEecCCCCEEEEe----------------------eCCCeEEEEECCC
Q 019405          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAF--SKVDISEKFSLFG----------------------GKGVEVNVWDLDK  193 (341)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~--~~~~~~~~~l~~~----------------------~~d~~v~i~d~~~  193 (341)
                      |++....        ...++.. +...+..  ..+++++++++..                      ..+..|.+||+.+
T Consensus       107 ~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A          107 VDLATLE--------ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             EETTTCC--------EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             EECCCCc--------ceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence            9986432        3334433 2233322  2348899888742                      2446899999998


Q ss_pred             CceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC------CeEEEEEcCCCCceeEEEEecC--CCeEEE
Q 019405          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFRE--TPIKAV  264 (341)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~--~~v~~~  264 (341)
                      ++.......          ...+..+.|  +| +++.|+....+      ..|.++|....+  ...+..+.  ..+..+
T Consensus       178 g~~~~l~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          178 GESTVILQE----------NQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHE  243 (388)
T ss_dssp             CCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEE
T ss_pred             CceEEeecC----------CccccccEE--CCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccc
Confidence            865443322          134788899  89 99988877653      378888876543  34444343  257788


Q ss_pred             EEcCCCceEEEEeC-CC----CEEEEECCCCeEE--eEEeccccC---ceeEEEecCCCCEEEEE---------eCCCcE
Q 019405          265 AEEPDSFNIYIGNG-SG----DLASVDIRTGKLL--GCFIGKCSG---SIRSIARHPTLPIIASC---------GLDSYL  325 (341)
Q Consensus       265 ~~~~~~~~l~~g~~-dg----~i~iwd~~~~~~~--~~~~~~~~~---~i~~~~~~~~~~~l~s~---------~~dg~v  325 (341)
                      +|+|+|+.|+..+. ++    .|++||+.+++..  ..+.++ ..   ....++|+|+|+.|+..         ..+..|
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence            99999987765443 22    3999999988743  333321 10   12234799999977754         456689


Q ss_pred             EEEEcCCCce
Q 019405          326 RFWDIKTRQL  335 (341)
Q Consensus       326 ~iwd~~~~~~  335 (341)
                      ++||+.+++.
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=1.3e-13  Score=122.63  Aligned_cols=292  Identities=14%  Similarity=0.084  Sum_probs=184.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCC--CCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~   92 (341)
                      ..+++...+|.|.+++....     +++.++... .....++|++|++    ++++++.|+.|.+||+.  +++.+.++.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g-~~p~~v~~SpDGr----~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTG-YAVHISRLSASGR----YLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----CEEEEEECS-SCEEEEEECTTSC----EEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC-----eEEEEEeCC-CCccceEECCCCC----EEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            44567778899999998775     566565432 2345677887766    88999999999999995  777766665


Q ss_pred             ccCCCCCCCCCCceeeEeeee---ccccccccccceeEEEcccceeEEEEeeecccc----c------------------
Q 019405           93 NAGDSGAQPEDDGIVGLHLFK---RQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----A------------------  147 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~----~------------------  147 (341)
                      ..         .....+.+.+   ++++      ..+++...++.+.++|....+..    .                  
T Consensus       238 ~G---------~~P~~ia~s~~~~pDGk------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          238 IG---------SEARSIETSKMEGWEDK------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             CC---------SEEEEEEECCSTTCTTT------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             cC---------CCCceeEEccccCCCCC------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            41         2334455542   2221      03444445577777774322110    0                  


Q ss_pred             -------------ccCCceEEEEEee-----------cCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCceeeecCC
Q 019405          148 -------------ESSCSTVKSWNVC-----------ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       148 -------------~~~~~~v~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~  202 (341)
                                   ....+.+.+++..           .......+.|+|++++++++. .++.|.++|+.+++....+..
T Consensus       303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence                         0011233333321           123445678999999887655 578999999999987766653


Q ss_pred             -CCCCccCccCCeeeeEEEEEecCCCCEE-EEEe-CCCeEEEEEcCCCC------ceeEEEEecCCCeEEEEEcCCCceE
Q 019405          203 -PPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGT-NDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       203 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                       ...     .|++  ....|. +|++..+ +++. .++.|.++|....+      +.++.+......-..+..+|+++++
T Consensus       383 gg~~-----Phpg--~g~~~~-~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l  454 (567)
T 1qks_A          383 GGQT-----PHPG--RGANFV-HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL  454 (567)
T ss_dssp             SSSS-----BCCT--TCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred             cCcC-----CCCc--cceeeE-CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence             221     1222  122232 5664444 4443 46899999988721      2366666543333557899999999


Q ss_pred             EEEeC-------CCCEEEEECCCC-----eE-EeEEec-------cccCceeEEEecCCCCEEEEEe-----CCCcEEEE
Q 019405          274 YIGNG-------SGDLASVDIRTG-----KL-LGCFIG-------KCSGSIRSIARHPTLPIIASCG-----LDSYLRFW  328 (341)
Q Consensus       274 ~~g~~-------dg~i~iwd~~~~-----~~-~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~-----~dg~v~iw  328 (341)
                      .+...       .+.|.++|+.+.     .. ...+.-       .....+..+.|+|+|..+..+.     .++.|.++
T Consensus       455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~  534 (567)
T 1qks_A          455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV  534 (567)
T ss_dssp             EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred             EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence            98763       458999999876     21 122220       0135788999999999776653     37899999


Q ss_pred             EcCCCceeeee
Q 019405          329 DIKTRQLLSAV  339 (341)
Q Consensus       329 d~~~~~~~~~~  339 (341)
                      |.++++.+.++
T Consensus       535 D~~t~~~~~~i  545 (567)
T 1qks_A          535 DDKTLELKHVI  545 (567)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCceEEEEe
Confidence            99999988776

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=8.9e-15  Score=123.63  Aligned_cols=233  Identities=13%  Similarity=0.119  Sum_probs=147.2

Q ss_pred             CceeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           51 SNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ....++++++++    +|+++..  +++|.+||+.+++.+.. +..          ........++....       .++
T Consensus       109 ~p~~i~~spdg~----~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~----------~~~~~v~~~p~~~~-------~~~  167 (361)
T 2oiz_A          109 YDGLFRQTTDGK----FIVLQNASPATSIGIVDVAKGDYVEDVTAA----------AGCWSVIPQPNRPR-------SFM  167 (361)
T ss_dssp             CGGGEEECTTSS----EEEEEEESSSEEEEEEETTTTEEEEEEGGG----------TTEEEEEECTTSSS-------EEE
T ss_pred             CcceEEECCCCC----EEEEECCCCCCeEEEEECCCCcEEEEEecC----------CCcceeEEcCCCCe-------eEE
Confidence            455677777766    7888764  68999999999887766 543          11111223333221       677


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPK  205 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~  205 (341)
                      +.+.||.+.+++++........ ......|+... .+ ..+.+++++..++..+.++.|.++|+......  ..+.....
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~-~~~~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQ-SRSKQMFSVKD-DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEE-EECCCCSCTTT-SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             EECCCCcEEEEEECCCCcEeee-ccccceEcCCC-Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            8888999888887532110000 00001222211 11 12233566777777788899999998754321  11111000


Q ss_pred             CccCc-cCCeeeeEEEEEecCCCCEEEEEeC-----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceE
Q 019405          206 NSLGI-FTPTWFTSAAFLSIDDHRKFVAGTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (341)
Q Consensus       206 ~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  273 (341)
                      ..... ..+.....++|  +|+++.++++..           .+.|.+||+.+.+. +..+..+.  ...++|+|+|++|
T Consensus       245 ~~~~~~~~p~g~~~~a~--~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l  319 (361)
T 2oiz_A          245 EDKAKNWVPGGYNLVGL--HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLM  319 (361)
T ss_dssp             HHHHTTCEECCSSCEEE--ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEE
T ss_pred             cccccccccCCeeEEEE--ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEE
Confidence            00000 00111223678  788888777643           35899999998764 78888776  8999999999999


Q ss_pred             EEEeCCCCEEEEECCCC--eEEeEEeccccCceeEEEecCCCC
Q 019405          274 YIGNGSGDLASVDIRTG--KLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      ++++. +.|.+||..++  +.+..+... ......++++|+|.
T Consensus       320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          320 LTLDG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVGG  360 (361)
T ss_dssp             EEECS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred             EEeCC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence            99887 99999999999  999887655 56778899999985

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=3.7e-14  Score=114.89  Aligned_cols=243  Identities=7%  Similarity=-0.100  Sum_probs=155.0

Q ss_pred             CceeEEEeccCCCCCceEE-EEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           51 SNCVLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      ....+++++++.    +++ +...++.|.+|+..+.... .+..       .....+.++.+-+...        .+++.
T Consensus        25 ~p~~i~~~~~g~----l~v~~~~~~~~i~~~~~~~~~~~-~~~~-------~~~~~p~~i~~~~~g~--------l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN----VYVTSEGMYGRVVKLATGSTGTT-VLPF-------NGLYQPQGLAVDGAGT--------VYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC----EEEEECSSSCEEEEECC-----E-ECCC-------CSCCSCCCEEECTTCC--------EEEEE
T ss_pred             CccceEECCCCC----EEEEccCCCCcEEEecCCCcccc-eEee-------CCcCCcceeEECCCCC--------EEEEc
Confidence            344566665544    555 4367899999997654321 1111       1112344444433222        44444


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccC
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  209 (341)
                      . ++.+.+|+....         .+..+.......+..++++++++++++...++.|.+|+..+..........      
T Consensus        85 ~-~~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------  148 (270)
T 1rwi_B           85 F-NNRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG------  148 (270)
T ss_dssp             T-TTEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS------
T ss_pred             C-CCEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc------
Confidence            4 788888875322         222222222256789999999998887777889999986654433221111      


Q ss_pred             ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                         ...+.++++  +++++++++...++.|.+||...... ......+...+..++++++|.++++...++.|.+||...
T Consensus       149 ---~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          149 ---LNDPDGVAV--DNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             ---CCSCCCEEE--CTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             ---CCCceeEEE--eCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence               123677888  88888777777788999999876442 221122335688999999997777777788999999876


Q ss_pred             CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      .........+ ...+.+++++++|+++++...++.|+++++...+..
T Consensus       223 ~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          223 TTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             SCCEECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CcceeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            5433322222 356899999999998889889999999999876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=5.1e-14  Score=128.89  Aligned_cols=283  Identities=11%  Similarity=0.008  Sum_probs=162.3

Q ss_pred             eeeee--cCCCCeEEEEEecCccCccceeeeccCCCCCce---------eEEEeccCCCCCce-EEEEcc-CCeEEEeeC
Q 019405           16 RALTF--DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC---------VLAASIDDSQNDPL-LAVARK-NGLTDILNP   82 (341)
Q Consensus        16 ~~~~~--~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~s~~~~~~~~~-l~~~~~-dg~i~iw~~   82 (341)
                      .++..  +.+|...+|.....  +.   ...+..+...+.         ..+++  .+|+|++ |+.+.. +..|.+|++
T Consensus        37 ~~~~~~~~~~~~~~l~~~~~~--~~---~~~l~~~~~~~~~~~~~~~~~~~~~~--~SPDg~~~la~~~~~~~~l~~~~~  109 (662)
T 3azo_A           37 WWVAPRPAEAGRATLVRRRAD--GA---EESALPAPWNVRNRVFEYSGFPWAGV--PRPAGGPLLVFTHFGDQRLYAFEP  109 (662)
T ss_dssp             EEEEEETTTTTEEEEEEECTT--SC---EEESSCTTCCBCCCGGGTCCCCEEEE--CCSSSSCEEEEEBTTTCCEEEECT
T ss_pred             EEEecCcccCCcEEEEEECCC--CC---cceeCCCCccccccccccCCccceee--eecCCCeEEEEEECCCCeEEEEcC
Confidence            34444  45677788886332  32   223444443333         23333  2345557 676553 566777776


Q ss_pred             C--C-CcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc----------ceeEEEEeeeccccccc
Q 019405           83 L--N-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----------GKASMRSIEVTKVSAES  149 (341)
Q Consensus        83 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------g~~~i~~~~~~~~~~~~  149 (341)
                      .  . ++ ...+....   ...+...+..+.|.+...        .|+.++.+          ..+.+|++......   
T Consensus       110 ~~~g~~~-~~~l~~~~---~~~~~~~~~~~~~spDg~--------~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---  174 (662)
T 3azo_A          110 DAPGGAV-PRPLTPVS---AVGGGLRWADPVLLPERG--------EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA---  174 (662)
T ss_dssp             TSTTCCC-CEECSCCC---CSTTCEEEEEEEEETTTT--------EEEEEEEEECSSSTTCEEEEEEEEETTSTTTT---
T ss_pred             CCCCCCC-CEeccCCc---cCCCCccccCcEECCCCC--------EEEEEEecccCCCCCCceeEEEEEECCCCccc---
Confidence            5  2 33 22332210   000223455555555444        77777765          46777776541000   


Q ss_pred             CCceEEEEEeecCCceEEEEecCCCCEEEEeeCC--------CeEEEEECC-CCc--eeeecCCCCCCccCccCCeeeeE
Q 019405          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLD-KCE--KIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       150 ~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      ..+.++.....+...+..++|+|||++|+.++.+        ..|++||+. +++  ....+...        +...+..
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~  246 (662)
T 3azo_A          175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQ  246 (662)
T ss_dssp             CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEE
T ss_pred             cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--------CCceEcc
Confidence            0011222110223466778999999999987755        379999998 561  22222211        1244788


Q ss_pred             EEEEecCCCCEEEEEeCCC--eEEEEEcCCCCceeEEEEecCCC---------eEEEEEcCCCceEEEEeCCCCEEEE--
Q 019405          219 AAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFRETP---------IKAVAEEPDSFNIYIGNGSGDLASV--  285 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~g~~dg~i~iw--  285 (341)
                      +.|  +|++++++++..++  .|.+||+.+++  ...+..+...         +..++|+|+++++++++. +.++||  
T Consensus       247 ~~~--spdg~l~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          247 AEW--APDGSLIVATDRTGWWNLHRVDPATGA--ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEE--CTTSCEEEEECTTSSCEEEEECTTTCC--EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             eEE--CCCCeEEEEECCCCCeEEEEEECCCCc--eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            999  89999888888888  56666665543  2333222211         467899999999999988 999999  


Q ss_pred             ECCCCeEEeEEeccccCceeEE-EecCCCCEEEEEeCCC--cEEEEEcCCCce
Q 019405          286 DIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGLDS--YLRFWDIKTRQL  335 (341)
Q Consensus       286 d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~s~~~dg--~v~iwd~~~~~~  335 (341)
                      |+.+++ +..+..+ ...+..+ +++++.-++++++.+.  .|.++|+.+++.
T Consensus       322 d~~~~~-~~~l~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          322 DPESGE-LVDAAGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             ETTTTE-EEECCSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ECCCCc-EEEecCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            666565 5667666 6677766 5443333445555554  455667767654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=4.7e-13  Score=111.87  Aligned_cols=251  Identities=11%  Similarity=0.012  Sum_probs=155.7

Q ss_pred             cCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCC
Q 019405           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (341)
Q Consensus        21 ~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  100 (341)
                      ..++.++.|.   .     +....+..+......++|++++    .+++++..++.|.+||.++++.......       
T Consensus        24 ~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------   84 (333)
T 2dg1_A           24 ISESELQTIT---A-----EPWLEISKKGLQLEGLNFDRQG----QLFLLDVFEGNIFKINPETKEIKRPFVS-------   84 (333)
T ss_dssp             CCGGGSCEEE---C-----EEEEEEESSCCCEEEEEECTTS----CEEEEETTTCEEEEECTTTCCEEEEEEC-------
T ss_pred             eecccCcccc---c-----ceeEEEeccCccccCcEECCCC----CEEEEECCCCEEEEEeCCCCcEEEEeeC-------
Confidence            4566667771   1     1223344444455667776544    4677888899999999987765443322       


Q ss_pred             CCCCceeeEeeeeccccccccccceeEEEccc----ceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCC
Q 019405          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEK  175 (341)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~  175 (341)
                       ....+.++.+.+...        .+++...+    +.+.+|+.+...        ...+.. ......+..+.++|+++
T Consensus        85 -~~~~~~~i~~~~dg~--------l~v~~~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~i~~d~~g~  147 (333)
T 2dg1_A           85 -HKANPAAIKIHKDGR--------LFVCYLGDFKSTGGIFAATENGDN--------LQDIIEDLSTAYCIDDMVFDSKGG  147 (333)
T ss_dssp             -SSSSEEEEEECTTSC--------EEEEECTTSSSCCEEEEECTTSCS--------CEEEECSSSSCCCEEEEEECTTSC
T ss_pred             -CCCCcceEEECCCCc--------EEEEeCCCCCCCceEEEEeCCCCE--------EEEEEccCccCCcccceEECCCCC
Confidence             124566666543322        55555544    577777754322        111211 11235688999999998


Q ss_pred             EEEEeeC------CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCC-C
Q 019405          176 FSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSA-Q  247 (341)
Q Consensus       176 ~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~-~  247 (341)
                      ++++...      .+.|..+|..+++.......          ...+..++|  +|+++.|+ +...++.|.+||+.+ +
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~--~~dg~~l~v~~~~~~~i~~~d~~~~g  215 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------ISVANGIAL--STDEKVLWVTETTANRLHRIALEDDG  215 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEEEeccccccCCCceEEEEeCCCCEEEEeecC----------CCcccceEE--CCCCCEEEEEeCCCCeEEEEEecCCC
Confidence            8776653      35677777655443322111          123678889  88988654 445678999999964 2


Q ss_pred             CceeEEE-----Eec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccC------ceeEEEecCCCC
Q 019405          248 RRPVMSF-----DFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG------SIRSIARHPTLP  314 (341)
Q Consensus       248 ~~~~~~~-----~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------~i~~~~~~~~~~  314 (341)
                      .. +..+     ...  ...+..++++++|+++++...++.|.+||. +++.+..+..+ ..      .+.+++|+|++.
T Consensus       216 ~~-~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          216 VT-IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             SS-EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT-TGGGTCSCBCCEEEECTTSC
T ss_pred             cC-cccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC-CCccccccCcceEEECCCCC
Confidence            22 2211     111  135778999999988887777889999998 57777666644 22      689999999987


Q ss_pred             EEEEEeCC
Q 019405          315 IIASCGLD  322 (341)
Q Consensus       315 ~l~s~~~d  322 (341)
                      .|+.++.+
T Consensus       293 ~L~v~~~~  300 (333)
T 2dg1_A          293 QLIICSND  300 (333)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCc
Confidence            76655554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=6.6e-14  Score=119.79  Aligned_cols=235  Identities=8%  Similarity=-0.094  Sum_probs=140.4

Q ss_pred             EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceee---Ee---------------eeeccc
Q 019405           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG---LH---------------LFKRQR  116 (341)
Q Consensus        55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~  116 (341)
                      ..|++++.    +|+.++.++.|++||+.+++.........        .....   +.               .+.++.
T Consensus        86 ~~~spdg~----~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg  153 (396)
T 3c5m_A           86 GFISTDER----AFFYVKNELNLMKVDLETLEEQVIYTVDE--------EWKGYGTWVANSDCTKLVGIEILKRDWQPLT  153 (396)
T ss_dssp             CEECTTSS----EEEEEETTTEEEEEETTTCCEEEEEECCT--------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             ceECCCCC----EEEEEEcCCcEEEEECCCCCcEEEEeccc--------ccCCCCCEEEeccCCccccccccccccCCCC
Confidence            55665555    89999889999999998876554443211        10000   00               011111


Q ss_pred             cccccccceeEEE-----cccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEeeCC------C
Q 019405          117 EESSSRSRTLLTC-----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKG------V  184 (341)
Q Consensus       117 ~~~~~~~~~l~~~-----~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~  184 (341)
                      .       .++..     ..+..+.+|++....        ...+.  .+...+..+.|+| +++.|+..+.+      .
T Consensus       154 ~-------~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (396)
T 3c5m_A          154 S-------WEKFAEFYHTNPTCRLIKVDIETGE--------LEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA  216 (396)
T ss_dssp             S-------HHHHHHHHHTCCCEEEEEEETTTCC--------EEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred             c-------ceeeeeeccCCCcceEEEEECCCCc--------EEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence            0       12211     234456666653221        11222  2455688899999 78877765543      3


Q ss_pred             eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEEEcCCCCceeEEEEecCC
Q 019405          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFRET  259 (341)
Q Consensus       185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~  259 (341)
                      .|.+||+..++... +..+..       ...+..++|  +|++++|+..+.+     +.|++||+.+++.  ..+.... 
T Consensus       217 ~l~~~d~~~~~~~~-l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~-  283 (396)
T 3c5m_A          217 RMWLVNEDGSNVRK-IKEHAE-------GESCTHEFW--IPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP-  283 (396)
T ss_dssp             CCEEEETTSCCCEE-SSCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC-
T ss_pred             eEEEEECCCCceeE-eeccCC-------CccccceEE--CCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC-
Confidence            68888987654322 222110       134778899  8999988776544     4599999987653  2232222 


Q ss_pred             CeEEEEEcC-CCceEEEEe----------------CCCCEEEEECCCCeEEeEEeccccC-----------ceeEEEecC
Q 019405          260 PIKAVAEEP-DSFNIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCSG-----------SIRSIARHP  311 (341)
Q Consensus       260 ~v~~~~~~~-~~~~l~~g~----------------~dg~i~iwd~~~~~~~~~~~~~~~~-----------~i~~~~~~~  311 (341)
                      ... +.|+| +|++++.++                .+..|++||+.+++.. .+..+ ..           .+..++|+|
T Consensus       284 ~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~s~  360 (396)
T 3c5m_A          284 PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-STSWDVLDGDRQITHPHPSFTP  360 (396)
T ss_dssp             SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-CCCCCCBTTBSSTTCCCCEECT
T ss_pred             CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-CCccccccccccCCCCCceEcc
Confidence            233 89999 999888754                3467999999887753 34433 32           256789999


Q ss_pred             CCCEEEEEeC-CCc--EEEEEcCCCc
Q 019405          312 TLPIIASCGL-DSY--LRFWDIKTRQ  334 (341)
Q Consensus       312 ~~~~l~s~~~-dg~--v~iwd~~~~~  334 (341)
                      +|+.|+.++. ++.  |.+.|+.+++
T Consensus       361 dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          361 NDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             CCCeEEEEecCCCCceEEEEEEcccc
Confidence            9998877664 454  4445555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=3.9e-14  Score=130.62  Aligned_cols=244  Identities=11%  Similarity=-0.017  Sum_probs=158.6

Q ss_pred             CceeEEEeccCCCCCceEEEEccCC-----eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNG-----LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .+..++||+|++    +||.+..++     .|++||+.+++.+......         ..+..+.|.+...        .
T Consensus       126 ~~~~~~~SPDg~----~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---------~~~~~~~wspDg~--------~  184 (710)
T 2xdw_A          126 ALRGYAFSEDGE----YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---------VKFSCMAWTHDGK--------G  184 (710)
T ss_dssp             EEEEEEECTTSS----EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---------ECSCCEEECTTSS--------E
T ss_pred             EEEEEEECCCCC----EEEEEEcCCCCceEEEEEEECCCCCCCcccccC---------cccceEEEEeCCC--------E
Confidence            344555665554    888766543     8999999988765532221         1133455554444        6


Q ss_pred             eEEEcccce----------------eEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeC-----C
Q 019405          126 LLTCTTKGK----------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGK-----G  183 (341)
Q Consensus       126 l~~~~~~g~----------------~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----d  183 (341)
                      |+.++.++.                +.+|++.....      ....++... +...+..+.|+||+++|+..+.     +
T Consensus       185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV  258 (710)
T ss_dssp             EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred             EEEEEECCccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence            666655544                77777643221      112333322 2345778999999999987764     5


Q ss_pred             CeEEEEECCC------Cc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEEcCCCCc-ee
Q 019405          184 VEVNVWDLDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRR-PV  251 (341)
Q Consensus       184 ~~v~i~d~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~-~~  251 (341)
                      ..|++||+.+      +. ....+..+.         ..+.. .|  +++++.|+..+..    ..|.+||+.++.. ..
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~---------~~~~~-~~--s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNF---------EGEYD-YV--TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSS---------SSCEE-EE--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             cEEEEEECcccccccCCccceEEeeCCC---------CcEEE-EE--eccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            6899999976      42 233333322         11222 35  5678777766553    3699999987541 13


Q ss_pred             EEEEecCC--CeEEEEEcCCCceEEEEeCCCC--EEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-e---CCC
Q 019405          252 MSFDFRET--PIKAVAEEPDSFNIYIGNGSGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-G---LDS  323 (341)
Q Consensus       252 ~~~~~~~~--~v~~~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---~dg  323 (341)
                      ..+..|..  .+..++|++++.++++...++.  |++||+.+++.+..+..+ .+.+..+.++|++..++.. +   ..+
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~  405 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPG  405 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCC
Confidence            55555544  5778999988888888888874  677788788877788776 7889999999998765533 2   347


Q ss_pred             cEEEEEcCCCc
Q 019405          324 YLRFWDIKTRQ  334 (341)
Q Consensus       324 ~v~iwd~~~~~  334 (341)
                      .|++||+.+++
T Consensus       406 ~i~~~d~~tg~  416 (710)
T 2xdw_A          406 IIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTSSS
T ss_pred             EEEEEECCCCc
Confidence            89999999877

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.65  E-value=5.1e-14  Score=114.19  Aligned_cols=189  Identities=10%  Similarity=0.133  Sum_probs=148.3

Q ss_pred             cceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCC--ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                      +..+++++.++.+.+|+.+..         . .+|......  .+.++.+.|+|++++  +.++.|..||. +++.++.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG---------~-~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK---------E-IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT---------E-EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCC---------e-EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence            348899999999999996433         3 246655443  688999999999888  34678999999 89999988


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEec------CCCeEEEEEcCCCceE
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNI  273 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l  273 (341)
                      ..+..        ..+.++.+  .++++++++.+. ++.|..+|. +++. +..+...      ......+++.++|.++
T Consensus        72 ~~~~~--------~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           72 AAPAG--------CEMQTARI--LPDGNALVAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             ECCTT--------CEEEEEEE--CTTSCEEEEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             cCCCC--------ccccccEE--CCCCCEEEEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCCEE
Confidence            76421        23677788  789999999887 777887875 4443 5555421      1234566788999999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++...++.|..||.. |+.+.++...  ....++...++++++++++.++.|..+|..+|+.+.++
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            999999999999998 9999988764  45677888999999999988889999999999998776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=6.9e-14  Score=129.53  Aligned_cols=270  Identities=9%  Similarity=-0.055  Sum_probs=153.0

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCce-----eEEEeccCCCCCceEEEEccC---------CeEEEee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC-----VLAASIDDSQNDPLLAVARKN---------GLTDILN   81 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~~~l~~~~~d---------g~i~iw~   81 (341)
                      ..+..+ ||.|++|++...     +....+..|.....     .++||+|++    +|+.++.+         +.+.+||
T Consensus        29 ~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Spdg~----~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           29 EYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSISPDGQ----FILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             EEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEECCCCC----EEEEEECCeeeEEEccceEEEEEE
Confidence            344444 889999998765     22233444443221     245565554    89988876         5667999


Q ss_pred             CCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce-EEEEEee
Q 019405           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVC  160 (341)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~-v~~~~~~  160 (341)
                      +.+++... +..        +...+....|.+...        .++.+ .++.+.+|++.......-..++. -.+++..
T Consensus        99 ~~~~~~~~-l~~--------~~~~~~~~~~SPdG~--------~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~  160 (740)
T 4a5s_A           99 LNKRQLIT-EER--------IPNNTQWVTWSPVGH--------KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (740)
T ss_dssp             TTTTEECC-SSC--------CCTTEEEEEECSSTT--------CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             CCCCcEEE-ccc--------CCCcceeeEECCCCC--------EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence            99887543 222        224455555544444        56555 57899999875433111001110 0011100


Q ss_pred             c--------CCceEEEEecCCCCEEEEeeCCC------------------------------------eEEEEECCC---
Q 019405          161 A--------SGTIAFSKVDISEKFSLFGGKGV------------------------------------EVNVWDLDK---  193 (341)
Q Consensus       161 ~--------~~~i~~~~~~~~~~~l~~~~~d~------------------------------------~v~i~d~~~---  193 (341)
                      .        -+....+.|+|||+.|+..+.|.                                    .|++||+.+   
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCS
T ss_pred             ccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCC
Confidence            0        01223588999999999875322                                    477788777   


Q ss_pred             Cc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCCC----c-eeEEE--EecCCC
Q 019405          194 CE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQR----R-PVMSF--DFRETP  260 (341)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~----~-~~~~~--~~~~~~  260 (341)
                      ++  ....+..+..   ...+...+..++|  +|++++++....    +..|++||+.+++    + .+..+  ..|...
T Consensus       241 ~~~~~~~~l~~~~~---~~~~~~~~~~~~w--spdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~  315 (740)
T 4a5s_A          241 VTNATSIQITAPAS---MLIGDHYLCDVTW--ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW  315 (740)
T ss_dssp             SSCCCEEEECCCHH---HHTSCEEEEEEEE--EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred             CCcceEEEecCCcc---CCCCCeEEEEEEE--eCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence            52  1222221100   0013467899999  889987666543    3379999998876    1 11222  445555


Q ss_pred             eE-----EEEEcCCCceEE-EEeC-C--CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE-EEeC
Q 019405          261 IK-----AVAEEPDSFNIY-IGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGL  321 (341)
Q Consensus       261 v~-----~~~~~~~~~~l~-~g~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~  321 (341)
                      +.     ...|+|||+.|+ ..+. +  ..|++||+.+++......+  ...+..+.. ++++.|+ +++.
T Consensus       316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g--~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG--TWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS--SSCEEEEEE-ECSSEEEEEESC
T ss_pred             EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC--CEEEEEEEE-EeCCEEEEEEec
Confidence            54     788999998876 5553 3  3588899887665543333  345555542 3455444 4433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=5.3e-13  Score=109.64  Aligned_cols=236  Identities=10%  Similarity=-0.054  Sum_probs=153.6

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      ....++|++++.   .+++++..++.|.+|+..++  ...+..        ....+.++.+-+...        .+++..
T Consensus        29 ~~eg~~~d~~g~---~l~~~~~~~~~i~~~~~~~~--~~~~~~--------~~~~~~~l~~~~dg~--------l~v~~~   87 (296)
T 3e5z_A           29 WTEGPVYVPARS---AVIFSDVRQNRTWAWSDDGQ--LSPEMH--------PSHHQNGHCLNKQGH--------LIACSH   87 (296)
T ss_dssp             SEEEEEEEGGGT---EEEEEEGGGTEEEEEETTSC--EEEEES--------SCSSEEEEEECTTCC--------EEEEET
T ss_pred             cccCCeEeCCCC---EEEEEeCCCCEEEEEECCCC--eEEEEC--------CCCCcceeeECCCCc--------EEEEec
Confidence            344566666553   16778888999999999876  444433        124455555543322        555555


Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEee----cCCceEEEEecCCCCEEEE----ee-------------CCCeEEEE
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLF----GG-------------KGVEVNVW  189 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~i~~~~~~~~~~~l~~----~~-------------~d~~v~i~  189 (341)
                      .++.+.+|+....         .+..+...    ....+..++++|+|+++++    ++             ..+.|..+
T Consensus        88 ~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           88 GLRRLERQREPGG---------EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             TTTEEEEECSTTC---------CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             CCCeEEEEcCCCC---------cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEE
Confidence            5688888886322         22222111    1234567899999998887    33             13466666


Q ss_pred             ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC-CCCc--eeEEEEecCCCeEEEEE
Q 019405          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS-AQRR--PVMSFDFRETPIKAVAE  266 (341)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~~~v~~~~~  266 (341)
                      +.. ++... +...         ......++|  +|+++.+++.+.++.|.+||+. .++.  ....+..+...+..+++
T Consensus       159 ~~~-g~~~~-~~~~---------~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~  225 (296)
T 3e5z_A          159 APD-GTLSA-PIRD---------RVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV  225 (296)
T ss_dssp             CTT-SCEEE-EECC---------CSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred             CCC-CCEEE-eecC---------CCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence            665 44322 2221         133678899  8999988777788999999987 3321  02223234455678999


Q ss_pred             cCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe-cCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          267 EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       267 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +++|+++++.  ++.|.+||.. ++.+..+..+ .. +.+++| .|+++.|+.++.+ .+.-++.++++.
T Consensus       226 d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          226 DAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             BTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             CCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            9999866655  7889999986 7888888776 55 999999 5899888888776 456667766554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=1.5e-13  Score=114.82  Aligned_cols=244  Identities=10%  Similarity=-0.016  Sum_probs=154.3

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      +..++|+++..    .++....++.++.|.   ++....+..        +.....++.+- +++.       .++++..
T Consensus         8 ~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~-~~g~-------l~~~~~~   64 (333)
T 2dg1_A            8 LPTLFYSGKSN----SAVPIISESELQTIT---AEPWLEISK--------KGLQLEGLNFD-RQGQ-------LFLLDVF   64 (333)
T ss_dssp             CCBCCSCGGGG----CSSCCCCGGGSCEEE---CEEEEEEES--------SCCCEEEEEEC-TTSC-------EEEEETT
T ss_pred             cceeeecCCcc----ceeEEeecccCcccc---cceeEEEec--------cCccccCcEEC-CCCC-------EEEEECC
Confidence            44555665544    345456688888882   333333333        12334455553 3331       5567788


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      ++.+.+|+.+.         +.+..+.......+.+++++++++++++...+    +.|.+||.++++....+....   
T Consensus        65 ~~~i~~~d~~~---------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---  132 (333)
T 2dg1_A           65 EGNIFKINPET---------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---  132 (333)
T ss_dssp             TCEEEEECTTT---------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---
T ss_pred             CCEEEEEeCCC---------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---
Confidence            88999998642         23333332345679999999999988877666    689999998766543222111   


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE-EeCCC
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSG  280 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg  280 (341)
                          ....+..+++  +|+++++++...      .+.|..+|..+++  +..+..+...+..++|+|+++.|+. ...++
T Consensus       133 ----~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~  204 (333)
T 2dg1_A          133 ----TAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTAN  204 (333)
T ss_dssp             ----SCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             ----cCCcccceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCC
Confidence                1245888999  888987776653      2556666655433  3333333346789999999986654 45678


Q ss_pred             CEEEEECCC-CeEEeEE------eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRT-GKLLGCF------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~-~~~~~~~------~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|++||+.+ ++.+..+      .......+..++++++|+++++...++.|.+||. +++.+..+
T Consensus       205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          205 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             eEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            999999963 3322211      1110136788999999998888888899999998 46655543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.63  E-value=1.6e-14  Score=123.72  Aligned_cols=237  Identities=9%  Similarity=-0.008  Sum_probs=144.7

Q ss_pred             ceeEEEeccCCCCCceEEEEccC---CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           52 NCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      +..++||+++.    +|+.....   ..|.+||+.+++.......         .........|.+++.       .|+.
T Consensus        38 ~~~~~~SpdG~----~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~---------~~~~~~~~~~spdg~-------~l~~   97 (396)
T 3c5m_A           38 FYQKCFTQDGK----KLLFAGDFDGNRNYYLLNLETQQAVQLTEG---------KGDNTFGGFISTDER-------AFFY   97 (396)
T ss_dssp             TTSCCBCTTSC----EEEEEECTTSSCEEEEEETTTTEEEECCCS---------SCBCTTTCEECTTSS-------EEEE
T ss_pred             eecCcCCCCCC----EEEEEEecCCCceEEEEECCCCcEEEeecC---------CCCccccceECCCCC-------EEEE
Confidence            44555665554    77776432   4788889987764332221         112222123344332       7777


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEeecCCceEE-------------------EEecCCCCEEEEe-----eCCC
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGV  184 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~  184 (341)
                      .+.++.+.+|++....        ...+.... ......                   ..++|+++.++..     ..+.
T Consensus        98 ~~~~~~l~~~d~~~~~--------~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~  168 (396)
T 3c5m_A           98 VKNELNLMKVDLETLE--------EQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC  168 (396)
T ss_dssp             EETTTEEEEEETTTCC--------EEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred             EEcCCcEEEEECCCCC--------cEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence            7778888888875332        11222211 111111                   3467788776654     3566


Q ss_pred             eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeCC------CeEEEEEcCCCCceeEEEEec
Q 019405          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR  257 (341)
Q Consensus       185 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~  257 (341)
                      .|.+||+.+++.......          ...+..+.|  +| ++..|+..+.+      ..|.+||+...+  ...+..+
T Consensus       169 ~l~~~d~~~g~~~~~~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~  234 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQD----------TAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEH  234 (396)
T ss_dssp             EEEEEETTTCCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCC
T ss_pred             eEEEEECCCCcEEeeccC----------CcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeecc
Confidence            899999988765543321          134778889  78 77777766543      368888887543  2333223


Q ss_pred             --CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecC-CCCEEEEEe---------
Q 019405          258 --ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCG---------  320 (341)
Q Consensus       258 --~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~---------  320 (341)
                        ...+..++|+|+|+.|+..+.+     +.|++||+.+++........   ... +.|+| +|++++.++         
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~  310 (396)
T 3c5m_A          235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVAD  310 (396)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC------
T ss_pred             CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeecc
Confidence              2247789999999987776543     34999999988654433221   123 89999 999888754         


Q ss_pred             -------CCCcEEEEEcCCCce
Q 019405          321 -------LDSYLRFWDIKTRQL  335 (341)
Q Consensus       321 -------~dg~v~iwd~~~~~~  335 (341)
                             .+..|++||+.+++.
T Consensus       311 ~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          311 ADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ----CCCCCCEEEEEETTTTBC
T ss_pred             ccccccCCCCcEEEEecccCce
Confidence                   347899999988764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=2.2e-13  Score=113.69  Aligned_cols=173  Identities=9%  Similarity=-0.027  Sum_probs=121.5

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEe-CCCeE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT-NDHQV  239 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~-~d~~i  239 (341)
                      .....++++++++++++...++.|++||..... .+..+...........+......+++  +| ++.++++.+ .++.|
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeE
Confidence            357889999999988888889999999986442 34433221100000112245788999  88 788888876 68999


Q ss_pred             EEEEcCCCCceeEEEEecC----------CCeEEEEEcCC-CceEEEEeCCCCEEEEECCCCeEEeEEecc-ccCceeEE
Q 019405          240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI  307 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~  307 (341)
                      ++||.. ++. +..+....          .....++++|+ +.++++...++.|++||..+++.+..+... +...+..+
T Consensus       169 ~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          169 VQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            999944 343 45443222          23789999998 777777778899999999989988887532 25678899


Q ss_pred             EecC------CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          308 ARHP------TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       308 ~~~~------~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|+|      ++..+++...+..|++||..+++.+..+
T Consensus       247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence            9999      3333333344558999999999888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=4.8e-13  Score=111.55  Aligned_cols=232  Identities=9%  Similarity=-0.014  Sum_probs=154.7

Q ss_pred             cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCc
Q 019405           73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        73 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~  152 (341)
                      .++.|.++|.++++....+......  .+..+....+.+ ....        .+++...++.+.++|....+        
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~-~~~~--------lyv~~~~~~~v~viD~~t~~--------   75 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVI-RDGI--------GWIVVNNSHVIFAIDINTFK--------   75 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEE-ETTE--------EEEEEGGGTEEEEEETTTCC--------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEE-ECCE--------EEEEEcCCCEEEEEECcccE--------
Confidence            4899999999998776554210000  011123334443 3333        66777778999999975433        


Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      .+..+  ........++++++++..++...++.|.+||..+++....+......    ........+++  . ++.++++
T Consensus        76 ~~~~i--~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~~~~~p~~i~~--~-~~~lyv~  146 (328)
T 3dsm_A           76 EVGRI--TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD----MESGSTEQMVQ--Y-GKYVYVN  146 (328)
T ss_dssp             EEEEE--ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----TTTCBCCCEEE--E-TTEEEEE
T ss_pred             EEEEc--CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----ccCCCcceEEE--E-CCEEEEE
Confidence            33333  23466788999888855444447899999999998877665543210    00012445666  2 3444444


Q ss_pred             Ee-CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC----------CCEEEEECCCCeEEeEEecccc
Q 019405          233 GT-NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       233 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      .. .++.|.++|..+++. +..+... .....++++|+|++++++..+          +.|.++|..+++....+.....
T Consensus       147 ~~~~~~~v~viD~~t~~~-~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g  224 (328)
T 3dsm_A          147 CWSYQNRILKIDTETDKV-VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG  224 (328)
T ss_dssp             ECTTCCEEEEEETTTTEE-EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred             cCCCCCEEEEEECCCCeE-EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence            43 488999999998664 5555543 345688999999877776654          7899999999998877764313


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      .....++|+|+++.|..+..  .|.+||..+++..
T Consensus       225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~  257 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP  257 (328)
T ss_dssp             CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred             CCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence            46889999999998877755  8999999988754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=1.7e-11  Score=100.52  Aligned_cols=239  Identities=6%  Similarity=0.014  Sum_probs=158.0

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      +...+..+++.+++.    ++++...++.|.+||.. ++. ..+...      .....+.++.+-+...        .++
T Consensus        13 ~~~~~~~i~~d~~g~----l~v~~~~~~~v~~~d~~-~~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v   72 (299)
T 2z2n_A           13 QDTGPYGITVSDKGK----VWITQHKANMISCINLD-GKI-TEYPLP------TPDAKVMCLTISSDGE--------VWF   72 (299)
T ss_dssp             SSCCEEEEEECTTSC----EEEEETTTTEEEEECTT-CCE-EEEECS------STTCCEEEEEECTTSC--------EEE
T ss_pred             cCCCccceEECCCCC----EEEEecCCCcEEEEcCC-CCe-EEecCC------cccCceeeEEECCCCC--------EEE
Confidence            345566777766555    55555557899999987 543 222211      1124455555433222        555


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPK  205 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~  205 (341)
                      +...++.+..|+..          +.+..+... ....+..++++++++++++...++.|..||. +++.... ....  
T Consensus        73 ~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~--  139 (299)
T 2z2n_A           73 TENAANKIGRITKK----------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK--  139 (299)
T ss_dssp             EETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST--
T ss_pred             eCCCCCeEEEECCC----------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC--
Confidence            55557778877642          234444432 3456889999999988887777889999998 5543322 1111  


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE--EecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                             ...+..+++  .+++.++++...++.|..||. +++  +..+  ..+...+..+++++++.++++...++.|.
T Consensus       140 -------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          140 -------GSYPSFITL--GSDNALWFTENQNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             -------TCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -------CCCCceEEE--cCCCCEEEEeCCCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence                   134788888  888888777777789999998 544  2222  22345688999999998777766788999


Q ss_pred             EEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          284 SVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       284 iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +||. +++.... ...+ ...+.+++++++|.++++...++.|..||. +++
T Consensus       208 ~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          208 RITT-SGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI  256 (299)
T ss_dssp             EECT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE
T ss_pred             EECC-CCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECC-CCc
Confidence            9999 6664332 2222 467899999999997777667889999998 454

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=2.4e-13  Score=124.99  Aligned_cols=245  Identities=9%  Similarity=-0.078  Sum_probs=149.5

Q ss_pred             CceeEEEeccCCCCCceEEE-----EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           51 SNCVLAASIDDSQNDPLLAV-----ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .+..++||+|++    +||.     |+.+..|++||+.+++.+..-..        .......+.|.+...        .
T Consensus       122 ~~~~~~~SPDG~----~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------~~~~~~~~~wspDg~--------~  181 (695)
T 2bkl_A          122 SLGTWAVSWDGK----KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI--------EGGKYATPKWTPDSK--------G  181 (695)
T ss_dssp             EEEEEEECTTSS----EEEEEEEETTCSCCEEEEEETTTCCBCSSCCB--------SCCTTCCCEECTTSS--------E
T ss_pred             EEEEEEECCCCC----EEEEEECCCCCceEEEEEEECCCCCCcCCccc--------CcccccceEEecCCC--------E
Confidence            455556665554    7874     34456899999999876511111        001113345544444        6


Q ss_pred             eEEEcccce-------------eEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCC----eEE
Q 019405          126 LLTCTTKGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVN  187 (341)
Q Consensus       126 l~~~~~~g~-------------~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~----~v~  187 (341)
                      |+.++.+..             +.+|++.....      ....++... +...+..+.++|||++|+..+.++    .|+
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence            666666544             78887754321      112333322 234678999999999998877665    677


Q ss_pred             EEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe---CCCeEEEEEcCCCCc-eeEEEEec--CCCe
Q 019405          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR-PVMSFDFR--ETPI  261 (341)
Q Consensus       188 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~--~~~v  261 (341)
                      +++..+++.. .+..+.         ..+....+  + ++.+++.+.   .++.|.+||+.++.. ....+..+  ...+
T Consensus       256 ~~~~~~~~~~-~l~~~~---------~~~~~~~~--~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l  322 (695)
T 2bkl_A          256 WKRPGEKDFR-LLVKGV---------GAKYEVHA--W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL  322 (695)
T ss_dssp             EECTTCSSCE-EEEECS---------SCCEEEEE--E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred             EEcCCCCceE-EeecCC---------CceEEEEe--c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence            7776554432 222221         12334445  3 444444443   258899999977542 12344433  3457


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEE----eCCCcEEEEEcCCCce
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQL  335 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~~~  335 (341)
                      ..++|+ ++.++++...|+..+||.+. +++.+..+..+..+.+..+.++|++..++..    ...+.|++||+.+++.
T Consensus       323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            888888 67788888889888877554 4555666654435678889999999866622    3457899999988763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=1.7e-12  Score=106.03  Aligned_cols=191  Identities=11%  Similarity=0.053  Sum_probs=135.6

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEee-----cCCceEEEEe-cCCCCEEEEeeC-CCeEEEEECCCCcee
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKV-DISEKFSLFGGK-GVEVNVWDLDKCEKI  197 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-----~~~~i~~~~~-~~~~~~l~~~~~-d~~v~i~d~~~~~~~  197 (341)
                      .+++...++.+.+|+.+.         ..+..+...     +...+..+++ .++++++++... ++.|.+|| .+++.+
T Consensus        43 l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~  112 (286)
T 1q7f_A           43 IIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV  112 (286)
T ss_dssp             EEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred             EEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence            666767889999998541         123333211     1235788899 467776666543 78999999 566666


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEE
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ..+....        ...+..+++  .++++++++...++.|.+||... +. +..+.  .+...+..++++|+|+++++
T Consensus       113 ~~~~~~~--------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          113 RKFGATI--------LQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEECTTT--------CSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEecCcc--------CCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            6554321        134788999  88998888877889999999653 32 44443  23456889999999998888


Q ss_pred             EeCCCCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEEEEEeCCC-cEEEEEcCCCceeeee
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~  339 (341)
                      ...++.|++||. +++.+..+..+ +...+..++++++|+++++...++ .|.+||. +++.+..+
T Consensus       181 ~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~  244 (286)
T 1q7f_A          181 DNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL  244 (286)
T ss_dssp             EGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred             ECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEE
Confidence            778899999997 45666666432 125788999999999888888776 9999995 46665544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=4.3e-11  Score=98.09  Aligned_cols=237  Identities=8%  Similarity=0.007  Sum_probs=150.8

Q ss_pred             CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE
Q 019405           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (341)
Q Consensus        49 ~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (341)
                      ...+..+++.+++.    ++++...++.|..|+.. ++. ..+...      .....+..+.+.+...        .+++
T Consensus        56 ~~~~~~i~~~~~g~----l~v~~~~~~~i~~~~~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v~  115 (299)
T 2z2n_A           56 DAKVMCLTISSDGE----VWFTENAANKIGRITKK-GII-KEYTLP------NPDSAPYGITEGPNGD--------IWFT  115 (299)
T ss_dssp             TCCEEEEEECTTSC----EEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECTTSC--------EEEE
T ss_pred             cCceeeEEECCCCC----EEEeCCCCCeEEEECCC-CcE-EEEeCC------CcCCCceeeEECCCCC--------EEEE
Confidence            34555666665444    66666668899999985 332 222210      1123455555433222        5555


Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCC
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN  206 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~  206 (341)
                      ...++.+.+++..          +.+..+... ....+..+++++++++.++...++.|..||. +++.... ....   
T Consensus       116 ~~~~~~i~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~---  181 (299)
T 2z2n_A          116 EMNGNRIGRITDD----------GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP---  181 (299)
T ss_dssp             ETTTTEEEEECTT----------CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---
T ss_pred             ecCCceEEEECCC----------CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC---
Confidence            5567788877641          123333222 2356889999999988887777789999998 6654432 2211   


Q ss_pred             ccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                            ...+..+++  .+++.+.++...++.|.+||. +++  +..+.  .+...+.+++++++|+++++...++.|..
T Consensus       182 ------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  250 (299)
T 2z2n_A          182 ------ASGPVGITK--GNDDALWFVEIIGNKIGRITT-SGE--ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR  250 (299)
T ss_dssp             ------TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred             ------CCcceeEEE--CCCCCEEEEccCCceEEEECC-CCc--EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence                  134778888  788887777667889999998 544  22332  23457889999999986666667889999


Q ss_pred             EECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          285 VDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       285 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ||. +++.... +..+ ...+.++++ +++.++++.+ .+.|..++.++++
T Consensus       251 ~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          251 LTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             ECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            998 4553322 2233 467899999 8888777665 5678888887654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=6.4e-12  Score=105.19  Aligned_cols=284  Identities=15%  Similarity=0.077  Sum_probs=173.1

Q ss_pred             ceeeeecC-----CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405           15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (341)
Q Consensus        15 ~~~~~~~~-----~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i   79 (341)
                      -+++..+.     ++.+.+++....     +++.++.....+ . +++++|++    +|+++.          .++.|.+
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~-va~spDG~----~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N-PVVADDGS----FIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E-EEECTTSS----CEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c-EEECCCCC----EEEEEcccccccccCCCCCEEEE
Confidence            44555544     577888887665     666666443344 3 88888777    676654          3678999


Q ss_pred             eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc--ccceeEEEEeeecccccccCCceEEEE
Q 019405           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSW  157 (341)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~  157 (341)
                      ||..+++.+.++........ ........+.+.+..+        .++++.  .++.+.++|+...+        .+..+
T Consensus       114 iD~~t~~v~~~I~v~~g~r~-~~g~~P~~~a~spDGk--------~lyVan~~~~~~VsVID~~t~~--------vv~tI  176 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRF-LVGTYPWMTSLTPDGK--------TLLFYQFSPAPAVGVVDLEGKA--------FKRML  176 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCC-CBSCCGGGEEECTTSS--------EEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred             EECCCCeEEEEEECCCcccc-ccCCCCceEEEcCCCC--------EEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence            99999998888764110000 0011222344444333        555554  26788888876444        33333


Q ss_pred             EeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeee-eEEEEEecCCCCEEEEEeC
Q 019405          158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGTN  235 (341)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~  235 (341)
                      ...  +.  ...+....+.+++.+.||.+.+.++.+ ++........    +.. ....+ ....|. .+++++++ .+.
T Consensus       177 ~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~-~~~~~~~~~~~~-~~dG~~~~-vs~  245 (386)
T 3sjl_D          177 DVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHP-EDEFLINHPAYS-QKAGRLVW-PTY  245 (386)
T ss_dssp             ECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSC-TTSCBCSCCEEE-TTTTEEEE-EBT
T ss_pred             ECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----ecc-ccccccccceeE-cCCCcEEE-EeC
Confidence            331  11  112222345666777888888888875 4432211110    000 00111 123552 35675544 556


Q ss_pred             CCeEEEEEcCCCCc-eeEEEE----------ecCCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEEe
Q 019405          236 DHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLG  294 (341)
Q Consensus       236 d~~i~iwd~~~~~~-~~~~~~----------~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~  294 (341)
                      +|.|++.|+.+... .+..+.          ........++++|+++.+++...          .+.|.++|+.+++.+.
T Consensus       246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence            89999999976432 122222          01123345778999988887653          2569999999999999


Q ss_pred             EEeccccCceeEEEecCCCC-EEEEE-eCCCcEEEEEcCCCceeeee
Q 019405          295 CFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       295 ~~~~~~~~~i~~~~~~~~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+...  ..+++|++++|++ +|+++ ..++.|.++|..+++.+.++
T Consensus       326 ~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          326 KFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            98864  4789999999996 66664 45899999999999998876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=2e-11  Score=108.58  Aligned_cols=243  Identities=13%  Similarity=0.103  Sum_probs=162.4

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee--ec
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE--VT  143 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~--~~  143 (341)
                      .++++...++.|.++|..+++.+.++...         .....+.+.+...        .+++++.++.+.+||+.  ..
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr--------~lyv~~~dg~V~viD~~~~t~  230 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGR--------YLFVIGRDGKVNMIDLWMKEP  230 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSC--------EEEEEETTSEEEEEETTSSSC
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCC--------EEEEEcCCCeEEEEECCCCCC
Confidence            46777788999999999999988887652         2334555444333        77888889999999973  21


Q ss_pred             ccccccCCceEEEEEeecCCceEEEEec----CCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCcc-CccCC-eee
Q 019405          144 KVSAESSCSTVKSWNVCASGTIAFSKVD----ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTP-TWF  216 (341)
Q Consensus       144 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~-~~v  216 (341)
                      .        .+.  .+..+.....++++    |+|++++++.. +++|.++|..+.+.+..+.......- ...|+ ..+
T Consensus       231 ~--------~v~--~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          231 T--------TVA--EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             C--------EEE--EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             c--------EeE--EEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence            1        222  33334566789999    69998887654 58999999999988877654321000 00011 146


Q ss_pred             eEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEe
Q 019405          217 TSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG  294 (341)
Q Consensus       217 ~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~  294 (341)
                      ..+..  ++++. +++....+|.|.++|....+.+.............+.|+|++++++++. .++.|.++|+.+++++.
T Consensus       301 a~i~~--s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          301 AAILA--SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             EEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEEEE--cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence            66766  55544 4455566799999998875432222222345677899999999887765 57899999999999887


Q ss_pred             EEec-c---ccCceeEEE-ecCCCC-EEEEEe-CCCcEEEEEcCC-------Cceeeee
Q 019405          295 CFIG-K---CSGSIRSIA-RHPTLP-IIASCG-LDSYLRFWDIKT-------RQLLSAV  339 (341)
Q Consensus       295 ~~~~-~---~~~~i~~~~-~~~~~~-~l~s~~-~dg~v~iwd~~~-------~~~~~~~  339 (341)
                      .+.. .   |.+  ..+. ++|++. .++++. .++.|.++|..+       .+.++++
T Consensus       379 ~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          379 IEDTGGQTPHPG--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEECSSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEeccCcCCCCc--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            7764 1   121  2222 588744 555554 468999999988       4555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=7.7e-13  Score=111.18  Aligned_cols=205  Identities=13%  Similarity=0.086  Sum_probs=129.7

Q ss_pred             CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc---ce--eEEEEeeecccccc
Q 019405           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GK--ASMRSIEVTKVSAE  148 (341)
Q Consensus        74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~--~~i~~~~~~~~~~~  148 (341)
                      ++.|.+||+.+++... +            ..+....|.+...        .++..+.+   +.  +.+|++....    
T Consensus        42 ~~~l~~~d~~~~~~~~-l------------~~~~~~~~SpDg~--------~la~~~~~~~~~~~~l~~~~~~~g~----   96 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I------------ENATMPRISPDGK--------KIAFMRANEEKKVSEIWVADLETLS----   96 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E------------ESCEEEEECTTSS--------EEEEEEEETTTTEEEEEEEETTTTE----
T ss_pred             cceEEEEeCCCCceEE-c------------ccCCCeEECCCCC--------EEEEEEeccCCCcceEEEEECCCCc----
Confidence            6789999998776422 2            1133344444433        55555443   34  4444443211    


Q ss_pred             cCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC---------------------------CeEEEEECCCCceeeecC
Q 019405          149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       149 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~v~i~d~~~~~~~~~~~  201 (341)
                          ...+...  .. +..+.|+|+++.|+.++.+                           ..|++||+.+++.+..+.
T Consensus        97 ----~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~  169 (347)
T 2gop_A           97 ----SKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE  169 (347)
T ss_dssp             ----EEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred             ----eEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence                2233332  23 8899999999998887642                           579999998877633332


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-------eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  274 (341)
                      ..           .+..+.|  +|++ +++++..+.       ...+|.+.++ . ...+..+ ..+..+  +|+|+.|+
T Consensus       170 ~~-----------~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~  230 (347)
T 2gop_A          170 KP-----------RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERIL  230 (347)
T ss_dssp             EE-----------TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEE
T ss_pred             CC-----------CcccccC--CCCe-EEEEEecccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEE
Confidence            21           2567788  8899 777775542       3445544433 2 4444444 455544  99999888


Q ss_pred             EEeCC--------CCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          275 IGNGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       275 ~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      .++.+        ..|++||  +++.......+ ...+.. +.|+ ++ ++++++.++.++|| +.+++.
T Consensus       231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             EEECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred             EEEccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence            77644        3688888  56554444444 677886 9999 88 99999999999999 876654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=1.2e-10  Score=98.52  Aligned_cols=281  Identities=11%  Similarity=-0.044  Sum_probs=169.8

Q ss_pred             ceeeeecC--CC---CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405           15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (341)
Q Consensus        15 ~~~~~~~~--~g---~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i   79 (341)
                      .+++..+.  .+   .+.+++....     +++.++.....+  .+++++|++    +|+++.          .++.|.+
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p--~i~~spDg~----~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP--NPVAAHSGS----EFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC--CeEECCCCC----EEEEEeccccccccCCCCCeEEE
Confidence            34555553  33   5677777654     565566443333  677887776    777765          3678999


Q ss_pred             eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEE-
Q 019405           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKS-  156 (341)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~-  156 (341)
                      ||..+.+.+..+.......+. .......+.+.+..+        .++.+..  ++.+.++| ...+        .+.. 
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~spDG~--------~l~v~n~~~~~~v~viD-~t~~--------~~~~~  163 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFD-VGPYSWMNANTPNNA--------DLLFFQFAAGPAVGLVV-QGGS--------SDDQL  163 (373)
T ss_pred             EECCCCcEEEEEECCCccccc-cCCCccceEECCCCC--------EEEEEecCCCCeEEEEE-CCCC--------EEeEE
Confidence            999988877766541000000 011222444444444        6666553  47788887 5443        2222 


Q ss_pred             EEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCee-eeEEEEEecCCCCEEEEEe
Q 019405          157 WNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW-FTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~  234 (341)
                      ...  ...   +.+.|++ ..+++.+.||.+.++|. +++...........   . .... .....+  .+++..++..+
T Consensus       164 i~~--~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~---~-~~~p~~~~~~~--~~~~~~~~~~~  231 (373)
T 2mad_H          164 LSS--PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML---T-AAQNLLTQPAQ--ANKSGRIVWPV  231 (373)
T ss_pred             cCC--Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc---c-CCcceeeccee--EecCCEEEEEc
Confidence            222  122   3344444 45566678899999999 77766332210000   0 0011 122344  34444444444


Q ss_pred             CCCeEEEEEcCCCCc-eeEEEEec----------CCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEE
Q 019405          235 NDHQVRLYDTSAQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL  293 (341)
Q Consensus       235 ~d~~i~iwd~~~~~~-~~~~~~~~----------~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~  293 (341)
                      ..+.+.+.|+..... .+..+...          ......+.++|+++.+++...          ++.|.++|+.+++.+
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence            678999999875432 12222111          122344788999988887653          357999999999999


Q ss_pred             eEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeee
Q 019405          294 GCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~  338 (341)
                      .++...  ....+++|+|||+ +++++. .++.|.++|+.+++.+.+
T Consensus       312 ~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          312 SQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            998753  4689999999999 777777 589999999999998877

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.57  E-value=2.8e-12  Score=116.94  Aligned_cols=248  Identities=12%  Similarity=0.066  Sum_probs=160.6

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc------cceeEEEE
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRS  139 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~i~~  139 (341)
                      ..|++++.|+.|..+|..+|+.+..+.......   ....+....... .+        .++.+..      +|.+..+|
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v~-~~--------~v~v~~~~~~~~~~g~v~a~D  196 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRVF-KG--------KVIIGNGGAEYGVRGYITAYD  196 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEEE-CC--------EEEEEecccccCCCCEEEEEE
Confidence            368889999999999999999988776531100   001111111111 11        4444443      57777777


Q ss_pred             eeecccccccCCceEEEEEeec---------------------------------CCceEEEEecCCCCEEEEeeCCC--
Q 019405          140 IEVTKVSAESSCSTVKSWNVCA---------------------------------SGTIAFSKVDISEKFSLFGGKGV--  184 (341)
Q Consensus       140 ~~~~~~~~~~~~~~v~~~~~~~---------------------------------~~~i~~~~~~~~~~~l~~~~~d~--  184 (341)
                      ....+.          +|....                                 ......+++++++..++.+..++  
T Consensus       197 ~~tG~~----------~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~  266 (677)
T 1kb0_A          197 AETGER----------KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSP  266 (677)
T ss_dssp             TTTCCE----------EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred             CCCCcE----------EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcc
Confidence            654431          222211                                 11123567888888888877664  


Q ss_pred             -----------------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---CEEEEEeCCCeEEEEEc
Q 019405          185 -----------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       185 -----------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~d~~i~iwd~  244 (341)
                                       .|..+|.++++.++.++.................+..  ..++   ..++.++.+|.++++|.
T Consensus       267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~--~~dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          267 WSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEET
T ss_pred             ccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec--ccCCcEeeEEEEECCCCEEEEEEC
Confidence                             5999999999999887654322111111111122222  2356   67889999999999999


Q ss_pred             CCCCceeEEEEecC-----------CCe------------------------EEEEEcCCCceEEEEeC-----------
Q 019405          245 SAQRRPVMSFDFRE-----------TPI------------------------KAVAEEPDSFNIYIGNG-----------  278 (341)
Q Consensus       245 ~~~~~~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l~~g~~-----------  278 (341)
                      .+++. +..+....           .++                        ..++++|++.++++...           
T Consensus       345 ~tG~~-l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  423 (677)
T 1kb0_A          345 TNGKF-ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKK  423 (677)
T ss_dssp             TTCCE-EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTT
T ss_pred             CCCCE-eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccc
Confidence            99874 44443211           001                        14688998888877543           


Q ss_pred             --------------------------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          279 --------------------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       279 --------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                                                      .|.|..||+.+++.+..++.  ..++....+...+.+++.++.||.++
T Consensus       424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~  501 (677)
T 1kb0_A          424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLV  501 (677)
T ss_dssp             CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred             cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEE
Confidence                                            16799999999999888764  34566666777888888899999999


Q ss_pred             EEEcCCCceeeeec
Q 019405          327 FWDIKTRQLLSAVC  340 (341)
Q Consensus       327 iwd~~~~~~~~~~~  340 (341)
                      +||.++|+.+.++.
T Consensus       502 a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          502 AYHAATGEKLWEAP  515 (677)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCceeeeee
Confidence            99999999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=4.8e-12  Score=104.68  Aligned_cols=242  Identities=9%  Similarity=-0.004  Sum_probs=151.3

Q ss_pred             CceeEEEeccCCCCCceEEE-------EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc
Q 019405           51 SNCVLAASIDDSQNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (341)
                      ....++|..++.    ++++       +..++.|.+||..+++.......    ........+.++.+.+..+       
T Consensus        19 ~~~~~~~~~~g~----l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~~~g-------   83 (314)
T 1pjx_A           19 GAEGPVFDKNGD----FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDRDAN-------   83 (314)
T ss_dssp             TCEEEEECTTSC----EEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECSSSS-------
T ss_pred             CccCceECCCCC----EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEecCCC-------
Confidence            344566664444    5555       46789999999877765322110    0000113455555433313       


Q ss_pred             ceeEEEcccceeEEEEeeecccccccCCceEEEE--Ee---ecCCceEEEEecCCCCEEEEeeCC---------------
Q 019405          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NV---CASGTIAFSKVDISEKFSLFGGKG---------------  183 (341)
Q Consensus       124 ~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~--~~---~~~~~i~~~~~~~~~~~l~~~~~d---------------  183 (341)
                       .+..+...+.+.+|+.+ .         .+..+  ..   .....+..++++++++++++...+               
T Consensus        84 -~l~v~~~~~~l~~~d~~-g---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~  152 (314)
T 1pjx_A           84 -QLFVADMRLGLLVVQTD-G---------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             -EEEEEETTTEEEEEETT-S---------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             -cEEEEECCCCEEEEeCC-C---------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence             45555444567777754 2         22222  11   112347889999999888776554               


Q ss_pred             CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEec----CCCCEEEEE-eCCCeEEEEEcC-CCCc----eeEE
Q 019405          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI----DDHRKFVAG-TNDHQVRLYDTS-AQRR----PVMS  253 (341)
Q Consensus       184 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~~~-~~d~~i~iwd~~-~~~~----~~~~  253 (341)
                      +.|..||.. ++.......          ......+++  +    ++++.++.+ ..++.|.+||.. .++.    ....
T Consensus       153 ~~l~~~~~~-g~~~~~~~~----------~~~~~~i~~--~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~  219 (314)
T 1pjx_A          153 GSIYCFTTD-GQMIQVDTA----------FQFPNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEE----------ESSEEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             CeEEEECCC-CCEEEeccC----------CCCcceEEE--ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence            567777765 443322111          022567788  7    888665554 567899999986 3321    1112


Q ss_pred             EEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405          254 FDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK  331 (341)
Q Consensus       254 ~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~  331 (341)
                      +..+. .....++++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|+++ ++++...++.|..|++.
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            22222 45788999999988888778889999999878777777665 57899999999999 44555567899999987


Q ss_pred             C
Q 019405          332 T  332 (341)
Q Consensus       332 ~  332 (341)
                      .
T Consensus       299 ~  299 (314)
T 1pjx_A          299 R  299 (314)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.55  E-value=8.8e-12  Score=113.90  Aligned_cols=247  Identities=12%  Similarity=0.101  Sum_probs=155.6

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------ccceeEEEE
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------TKGKASMRS  139 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~g~~~i~~  139 (341)
                      ..|++++.|+.|..+|.++|+.+..+.......   ....+.+..... .+        .++.+.      .+|.+..+|
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~---~~~~~~~sP~v~-~g--------~v~vg~~~~~~~~~g~v~a~D  189 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK---RSYTITGAPRVV-NG--------KVVIGNGGAEFGVRGYVTAYD  189 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTT---SCCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCC---CCccccCCcEEE-CC--------EEEEEeCCCccCCCCEEEEEE
Confidence            368889999999999999999887776520100   000111100111 11        344433      256777777


Q ss_pred             eeecccccccCCceEEEEEeec--------------------------------CCceEEEEecCCCCEEEEeeCCCe--
Q 019405          140 IEVTKVSAESSCSTVKSWNVCA--------------------------------SGTIAFSKVDISEKFSLFGGKGVE--  185 (341)
Q Consensus       140 ~~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~i~~~~~~~~~~~l~~~~~d~~--  185 (341)
                      ....+.          +|....                                ...-..++++|+..+++.++.++.  
T Consensus       190 ~~tG~~----------~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w  259 (689)
T 1yiq_A          190 AETGKE----------AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLW  259 (689)
T ss_dssp             TTTCCE----------EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred             CCCCcE----------EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcc
Confidence            644331          222211                                111125678888889998887764  


Q ss_pred             -----------------EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcC
Q 019405          186 -----------------VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       186 -----------------v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~  245 (341)
                                       |..+|.++++.++.++....................  ..+++   .++.++.+|.++++|.+
T Consensus       260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~--~~~G~~~~~v~~~~~~G~l~~lD~~  337 (689)
T 1yiq_A          260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAEL--PIDGKPRKVLMQAPKNGFFYVIDRA  337 (689)
T ss_dssp             CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETT
T ss_pred             ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEee--ccCCcEEEEEEEECCCCeEEEEECC
Confidence                             999999999999987653221111101111111122  12454   78889999999999999


Q ss_pred             CCCceeEEEEecC-C--------------------------------------CeEEEEEcCCCceEEEEeC--------
Q 019405          246 AQRRPVMSFDFRE-T--------------------------------------PIKAVAEEPDSFNIYIGNG--------  278 (341)
Q Consensus       246 ~~~~~~~~~~~~~-~--------------------------------------~v~~~~~~~~~~~l~~g~~--------  278 (341)
                      +++. +....... .                                      .-..++++|+..++++...        
T Consensus       338 tG~~-l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  416 (689)
T 1yiq_A          338 TGEL-LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEH  416 (689)
T ss_dssp             TCCE-EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred             CCCE-eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeee
Confidence            9874 32221110 0                                      0112688888877776532        


Q ss_pred             -------------------------------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          279 -------------------------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       279 -------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                                                           +|.|+.||+.+++.+..++.+  .++..-.+...+.+++.++.
T Consensus       417 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~  494 (689)
T 1yiq_A          417 IPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSA  494 (689)
T ss_dssp             CSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECT
T ss_pred             ccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECC
Confidence                                                 377999999999999888754  34444466677889999999


Q ss_pred             CCcEEEEEcCCCceeeee
Q 019405          322 DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       322 dg~v~iwd~~~~~~~~~~  339 (341)
                      ||.|+.||.++|+.+.++
T Consensus       495 dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          495 DGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             TSEEEEEETTTCCEEEEE
T ss_pred             CCcEEEEECCCCccceee
Confidence            999999999999999775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=1.3e-11  Score=101.32  Aligned_cols=190  Identities=9%  Similarity=-0.076  Sum_probs=133.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++++..++.+..|+...         + +..+.. ....+..++++++++++++...++.|.+||..+++.........
T Consensus        42 l~~~~~~~~~i~~~~~~~---------~-~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDG---------Q-LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             EEEEEGGGTEEEEEETTS---------C-EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred             EEEEeCCCCEEEEEECCC---------C-eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence            577778889999988632         2 444443 44678899999999988877777899999998776543322111


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEE----e-------------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG----T-------------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  267 (341)
                      ..     ....+..+++  +|+++++++.    +             ..+.|..++.. ++  +..+..+......++|+
T Consensus       111 ~~-----~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          111 GK-----KLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             TE-----ECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred             CC-----CCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence            10     0123667888  8899888873    2             13456556544 22  44555566677899999


Q ss_pred             CCCceEEEEeCCCCEEEEECC-CCeE---EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       268 ~~~~~l~~g~~dg~i~iwd~~-~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+++.+++.+.++.|++||+. +++.   ...+..+ ...+..++++++|+++++.  ++.|.+||.+ ++.+..+
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence            999988777778999999986 5554   3344223 5667889999999877666  7889999986 7766554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=2.7e-12  Score=107.80  Aligned_cols=222  Identities=11%  Similarity=0.083  Sum_probs=134.4

Q ss_pred             CceeEEEeccCCCCCceEEEEccC---C--eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .+..++||+|+.    +|+..+.+   +  .|.+|++.+++........         . +..+.|.+...        .
T Consensus        60 ~~~~~~~SpDg~----~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------~-~~~~~wspdg~--------~  117 (347)
T 2gop_A           60 NATMPRISPDGK----KIAFMRANEEKKVSEIWVADLETLSSKKILEAK---------N-IRSLEWNEDSR--------K  117 (347)
T ss_dssp             SCEEEEECTTSS----EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---------E-EEEEEECTTSS--------E
T ss_pred             cCCCeEECCCCC----EEEEEEeccCCCcceEEEEECCCCceEEEEcCC---------C-ccceeECCCCC--------E
Confidence            455566666555    78877654   3  3888888877654443331         2 44555544333        5


Q ss_pred             eEEEcc---------------------------cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE
Q 019405          126 LLTCTT---------------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (341)
Q Consensus       126 l~~~~~---------------------------~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~  178 (341)
                      |+.++.                           ...+.+|++....        .++....  . .+..+.|+|++ +++
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------~~~~l~~--~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------VIEEFEK--P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--------EEEEEEE--E-TTCEEEEETTE-EEE
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--------EEeeecC--C-CcccccCCCCe-EEE
Confidence            555542                           2455666653221        1133322  2 67788999999 777


Q ss_pred             EeeCCC---------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC--------CeEEE
Q 019405          179 FGGKGV---------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRL  241 (341)
Q Consensus       179 ~~~~d~---------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~i  241 (341)
                      ++..++         .|.++|  +++. ..+..+          ..+.  .+  +|++++|+..+.+        ..|.+
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~----------~~~~--~~--spdg~~l~~~~~~~~~~~~~~~~l~~  248 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK----------VSFY--AV--DSDGERILLYGKPEKKYMSEHNKLYI  248 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE----------ESEE--EE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred             EEecccccccccccccEEEeC--CCce-EEeccC----------ccee--eE--CCCCCEEEEEEccccCCccccceEEE
Confidence            765542         355555  4433 222211          1122  23  6789988877654        36888


Q ss_pred             EEcCCCCceeEEEEecCCCeEE-EEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          242 YDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ||  +++ .......+...+.. +.|+ ++ ++++++.++.++|| +.+++... +..+ ...|.+++|+|  .++++++
T Consensus       249 ~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~-~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          249 YD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKG-RHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             EC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECS-SSEEEEEEESS--SEEEEEE
T ss_pred             EC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecC-CCeEEeeeeeC--cEEEEEc
Confidence            88  333 22222334567776 8999 88 88899999999999 87666543 4444 67899999999  6777777


Q ss_pred             CCCcE-EEEEcCCCc
Q 019405          321 LDSYL-RFWDIKTRQ  334 (341)
Q Consensus       321 ~dg~v-~iwd~~~~~  334 (341)
                      .++.. .+|.+. ++
T Consensus       319 ~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          319 TATRLRELFTWD-GE  332 (347)
T ss_dssp             CSSSCCEEEEES-SS
T ss_pred             CCCChHHheEeC-Cc
Confidence            77665 778776 54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=8.5e-12  Score=115.06  Aligned_cols=195  Identities=11%  Similarity=0.055  Sum_probs=130.2

Q ss_pred             eeEEEccc-c----eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCe--------------
Q 019405          125 TLLTCTTK-G----KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVE--------------  185 (341)
Q Consensus       125 ~l~~~~~~-g----~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~--------------  185 (341)
                      .++.+..+ |    .+.+|++....        .+.. ... ...+..++|+||++.|+.++.++.              
T Consensus       138 ~la~~~~~~G~~~~~i~v~d~~tg~--------~~~~-~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          138 YFAYGLSASGSDWVTIKFMKVDGAK--------ELPD-VLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EEEEEEEETTCSCEEEEEEETTTTE--------EEEE-EEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EEEEEEcCCCCceEEEEEEECCCCC--------CCcc-ccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            55544433 3    78888875433        1111 111 112567899999999998887765              


Q ss_pred             --EEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-----CCeEEEEEcCC------CCce
Q 019405          186 --VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSA------QRRP  250 (341)
Q Consensus       186 --v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~~~  250 (341)
                        |++|++.+++..  ..+....       ++.++..+.|  +|++++|+..+.     +..|++||+.+      +...
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             CEEEEEECCCCcccceEEeccCC-------CCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence              999999876522  2222211       1244678889  999999888765     67899999986      4323


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEECCCCeE--EeEEecccc-CceeEEEecCCCCEEEEEeCCC
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL--LGCFIGKCS-GSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~--~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      ...+..+...+.. .|+|+|..|+..+..    +.|.+||+.+++.  ...+..+.. ..+..++|++++.++++...|+
T Consensus       279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence            5667767666655 488888877766543    3599999987642  234444423 3688899998888888998888


Q ss_pred             c--EEEEEcCCCceeeee
Q 019405          324 Y--LRFWDIKTRQLLSAV  339 (341)
Q Consensus       324 ~--v~iwd~~~~~~~~~~  339 (341)
                      .  |++||+.+|+.+..+
T Consensus       358 ~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             EEEEEEEETTTCCEEEEE
T ss_pred             EEEEEEEECCCCCEEEec
Confidence            4  566787677765554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=4.6e-12  Score=117.35  Aligned_cols=243  Identities=12%  Similarity=-0.015  Sum_probs=146.0

Q ss_pred             CceeEEEeccCCCCCceEEEEccC-----CeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .+..++||+|    |++||.+..+     ..|++||+.+++.+......         ..+..+.|.+. +        .
T Consensus       164 ~~~~~~~SPD----G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~---------~~~~~~~wspD-~--------~  221 (741)
T 1yr2_A          164 ALDAWAASDD----GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW---------VKFSGLAWLGN-D--------A  221 (741)
T ss_dssp             EEEEEEECTT----SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE---------EESCCCEESTT-S--------E
T ss_pred             EEEeEEECCC----CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC---------ceeccEEEECC-C--------E
Confidence            3444555554    4488876544     46999999998765431110         11123444444 3        5


Q ss_pred             eEEEcccc--------------eeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecCCCCEEEEeeCCC-----e
Q 019405          126 LLTCTTKG--------------KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGV-----E  185 (341)
Q Consensus       126 l~~~~~~g--------------~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-----~  185 (341)
                      |+.+..++              .+.+|++....      .....++.... ...+..+.|+|||++|+..+.++     .
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT  295 (741)
T ss_dssp             EEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred             EEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence            55555443              35666653221      11233443322 22478899999999988777543     8


Q ss_pred             EEEEECCCC--ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC----CCeEEEEEcCCC-CceeEEEEecC
Q 019405          186 VNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQ-RRPVMSFDFRE  258 (341)
Q Consensus       186 v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~-~~~~~~~~~~~  258 (341)
                      |++||+.++  +....+..+.         ..+... +  .++++.|+..+.    ++.|.+||+.++ ......+..+.
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~---------~~~~~~-~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~  363 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDL---------KAQWDF-V--DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK  363 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS
T ss_pred             EEEEECCCCCCcccEEecCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC
Confidence            999999876  3123333222         112222 2  357788777765    345999998874 23233333344


Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECC-CCeEEeEEeccccCceeEEEecCCCCEEEEE----eCCCcEEEEEcCCC
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTR  333 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~  333 (341)
                      ..+..+.++ ++.++++...|+..+||.+. +++....+..+..+.+..+.++|+++.|+..    ...++|++||+.++
T Consensus       364 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          364 DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            456677887 56677888888887766543 4566666654335678899999998855522    24578999999887


Q ss_pred             c
Q 019405          334 Q  334 (341)
Q Consensus       334 ~  334 (341)
                      +
T Consensus       443 ~  443 (741)
T 1yr2_A          443 K  443 (741)
T ss_dssp             E
T ss_pred             c
Confidence            6

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=1.7e-11  Score=104.40  Aligned_cols=275  Identities=14%  Similarity=0.054  Sum_probs=168.9

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchheeec
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      +.|.+++..+.     +++.++.-...+  -+++++|++    +|+++.          .++.|.++|..+++.+.++..
T Consensus        99 ~~VsVID~~t~-----~vv~~I~vG~~P--gia~SpDgk----~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H           99 TQQFVIDGSTG-----RILGMTDGGFLP--HPVAAEDGS----FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEEETTTT-----EEEEEEEECSSC--EEEECTTSS----CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEEEEECCCC-----EEEEEEECCCCC--ceEECCCCC----EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            67888888776     666666443344  678888777    676665          467899999999988887764


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      .....+. .......+.+.+..+        .++++..  ++.+.+.|+...+        .+..+.+  .+.   ....
T Consensus       168 ~g~~r~~-~g~~P~~~~~spDGk--------~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v--~g~---~~~~  225 (426)
T 3c75_H          168 PDAPRFL-VGTYQWMNALTPDNK--------NLLFYQFSPAPAVGVVDLEGKT--------FDRMLDV--PDC---YHIF  225 (426)
T ss_dssp             TTCCCCC-BSCCGGGSEECTTSS--------EEEEEECSSSCEEEEEETTTTE--------EEEEEEC--CSE---EEEE
T ss_pred             CCccccc-cCCCcceEEEcCCCC--------EEEEEecCCCCeEEEEECCCCe--------EEEEEEc--CCc---eeec
Confidence            1000000 001122333333333        5555543  5778888875443        2333333  111   1222


Q ss_pred             CCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          172 ISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       172 ~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      |++ ..+++.+.||.+.+.+..+++...... .   .+..........+.|  .+++..++.....+.|.+.|.......
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceE
Confidence            322 455556667777777775554432111 0   000000011123456  778887777778899999998754311


Q ss_pred             e-EEEEe----------cCCCeEEEEEcCCCceEEEEeC----------CCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405          251 V-MSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       251 ~-~~~~~----------~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      + ..+..          .......++++|+++.+++...          ++.|.++|+.+.+.+.++...  .....++|
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~  377 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINV  377 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEE
Confidence            1 11110          0011223689999887777642          357999999999999999754  36889999


Q ss_pred             cCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405          310 HPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       310 ~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|+++ +++++. .++.|.++|+.+++.++++
T Consensus       378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999 888888 5899999999999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.51  E-value=1.1e-12  Score=110.30  Aligned_cols=178  Identities=9%  Similarity=0.031  Sum_probs=123.6

Q ss_pred             ceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccc---cCCceEEEEEeecCCceEEEEecCCCCEEEEee
Q 019405          105 GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (341)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~---~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (341)
                      ++..+++-+..+        .+++++.++ +.+|++..-.....   ........  ..... |..++|  ++++|+++ 
T Consensus        39 ~~nlLais~~~g--------ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~-  103 (388)
T 1xip_A           39 SLQNLDISNSKS--------LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS-  103 (388)
T ss_dssp             CCBCEEEETTTT--------EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-
T ss_pred             cccEEEEcCCCC--------EEEEeCCCE-EEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-
Confidence            344555555544        778887764 55588654331100   00112122  23455 999999  89999998 


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  261 (341)
                      .++.|++||+.+.........+.         ..+.++.+. .|   .++++..||.|.+||+.++.. ..    +...|
T Consensus       104 ~~~~l~v~dv~sl~~~~~~~~~~---------~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~-~~----~~~~V  165 (388)
T 1xip_A          104 TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKNV-NN---TLVILNSVNDLSALDLRTKST-KQ----LAQNV  165 (388)
T ss_dssp             ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCE-EE----EEESE
T ss_pred             cCCcEEEEEchhhhccCccceee---------cceeeEEec-CC---CEEEEECCCCEEEEEccCCcc-cc----ccCCc
Confidence            88999999998765444333322         236666663 22   388889999999999997653 22    33589


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEE------e---ccccCceeEEEecCCCCEEEE
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~---~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      ++++|||+|  ++.|..||.+++|+...++.  ..++      .   +| ...|.++.|.+++.++++
T Consensus       166 s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          166 TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEE
T ss_pred             eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEE
Confidence            999999999  67899999999999988775  5556      2   24 678999999999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=5e-10  Score=91.71  Aligned_cols=236  Identities=8%  Similarity=-0.002  Sum_probs=147.5

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      ..+..+++..+    +.++++...++.|..||.. ++. ..+...      .....+.++..-+...        .+++.
T Consensus        62 ~~~~~i~~~~~----g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~------~~~~~~~~i~~~~~g~--------l~v~~  121 (300)
T 2qc5_A           62 AKVMCLIVSSL----GDIWFTENGANKIGKLSKK-GGF-TEYPLP------QPDSGPYGITEGLNGD--------IWFTQ  121 (300)
T ss_dssp             CCEEEEEECTT----SCEEEEETTTTEEEEECTT-SCE-EEEECS------STTCCEEEEEECSTTC--------EEEEE
T ss_pred             CcceeEEECCC----CCEEEEecCCCeEEEECCC-CCe-EEecCC------CCCCCCccceECCCCC--------EEEEc
Confidence            34555555544    4466666667899999987 554 222221      1123455555433222        55555


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  208 (341)
                      ..++.+..++..          +.+..+... ....+..+++++++++.++...++.|..+|. +++... +....    
T Consensus       122 ~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~----  185 (300)
T 2qc5_A          122 LNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT----  185 (300)
T ss_dssp             TTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS----
T ss_pred             cCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC----
Confidence            556777777643          233333332 2356889999999997776666789999998 554432 22111    


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                         ....+..+++  .+++++.++....+.|.+||. +++.....+..+...+.+++++++|++.++...++.|..||. 
T Consensus       186 ---~~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  258 (300)
T 2qc5_A          186 ---NAAAPVGITS--GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-  258 (300)
T ss_dssp             ---TTCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-
T ss_pred             ---CCCCcceEEE--CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-
Confidence               1134778888  788877777666788999998 333211112223456889999999987766666789999998 


Q ss_pred             CCeEEe-EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          289 TGKLLG-CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       289 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +++... .+... ...+.++++.++|.++++.. . .|..+|.+
T Consensus       259 ~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          259 DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            454432 22322 45688999999998776665 4 77777754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=5.6e-10  Score=91.42  Aligned_cols=237  Identities=8%  Similarity=0.010  Sum_probs=154.3

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (341)
                      .....+++..++.    ++++...++.|.+||.. ++... +...      .....+..+..-+...        .+++.
T Consensus        20 ~~p~~i~~d~~g~----l~v~~~~~~~v~~~~~~-~~~~~-~~~~------~~~~~~~~i~~~~~g~--------l~v~~   79 (300)
T 2qc5_A           20 SGPYGITSSEDGK----VWFTQHKANKISSLDQS-GRIKE-FEVP------TPDAKVMCLIVSSLGD--------IWFTE   79 (300)
T ss_dssp             CCEEEEEECTTSC----EEEEETTTTEEEEECTT-SCEEE-EECS------STTCCEEEEEECTTSC--------EEEEE
T ss_pred             CCcceeeECCCCC----EEEEcCCCCeEEEECCC-CceEE-EECC------CCCCcceeEEECCCCC--------EEEEe
Confidence            4455666665544    66666678999999987 54432 2211      1123455555432222        45555


Q ss_pred             cccceeEEEEeeecccccccCCceEEEEEee-cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee-ecCCCCCCc
Q 019405          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNS  207 (341)
Q Consensus       130 ~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~  207 (341)
                      ..++.+..++..          +.+..+... ....+..++++++++++++...++.|..+|.. ++... .+...    
T Consensus        80 ~~~~~v~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~----  144 (300)
T 2qc5_A           80 NGANKIGKLSKK----------GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK----  144 (300)
T ss_dssp             TTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST----
T ss_pred             cCCCeEEEECCC----------CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC----
Confidence            556778777643          233334332 23568899999999888877778899999987 54432 22211    


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw  285 (341)
                           ...+..+++  .+++++.++...++.|..+|. +++.  ..+.  .+...+..+++++++.+.++....+.|.+|
T Consensus       145 -----~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          145 -----GSYPAFITL--GSDNALWFTENQNNSIGRITN-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI  214 (300)
T ss_dssp             -----TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             -----CCCceeEEE--CCCCCEEEEecCCCeEEEECC-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence                 134778888  888887777666789999998 4342  2232  234568899999999777766667789999


Q ss_pred             ECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          286 DIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       286 d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      |. +++.... +... ...+.+++++++|+++++...++.|..||. +++
T Consensus       215 ~~-~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          215 TT-TGEISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNT  261 (300)
T ss_dssp             CT-TCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSC
T ss_pred             cC-CCcEEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCc
Confidence            98 5554332 2233 467889999999997777767789999998 454

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=1.1e-12  Score=110.13  Aligned_cols=155  Identities=13%  Similarity=0.126  Sum_probs=116.7

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      .+..+++++...++++|+.+ .+.+|++...+.... -............+. |+.++|    ++++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEE
Confidence            68899999999999999988 577798764331110 000000001122345 899999    78899998 88999999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      |+++... ......|+.++.++.+.+.  .++++..||.|.+||+.+++...    + ...|.+++|+|+|  ++.+..|
T Consensus       112 dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          112 DLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             ESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEETT
T ss_pred             Echhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEEcC
Confidence            9988664 5566778888888877654  38888999999999999887653    2 4589999999999  7788999


Q ss_pred             CcEEEEEcCCCce
Q 019405          323 SYLRFWDIKTRQL  335 (341)
Q Consensus       323 g~v~iwd~~~~~~  335 (341)
                      |.+++|+...+++
T Consensus       182 g~i~~~~~~~~~~  194 (388)
T 1xip_A          182 RSFQSFAWRNGEM  194 (388)
T ss_dssp             SCEEEEEEETTEE
T ss_pred             CcEEEEcCCCccc
Confidence            9999999887664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=6e-10  Score=95.52  Aligned_cols=240  Identities=13%  Similarity=0.061  Sum_probs=147.6

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ...+++.+    ++.++++...++.|++||.++++........         .... +.+.+...        .++.+..
T Consensus       133 P~~la~d~----~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~~~~g~--------~l~~~d~  190 (409)
T 3hrp_A          133 MWGIAAVG----NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAVTKDKQ--------RVYSIGW  190 (409)
T ss_dssp             EEEEEECS----TTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEECTTSS--------EEEEEBS
T ss_pred             ceEEEEeC----CCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeEecCCC--------cEEEEec
Confidence            34455553    4457777777899999999876654443321         1112 33333333        6666666


Q ss_pred             cc--eeEEEEeeecccccccCCceEEEE-E--eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC
Q 019405          132 KG--KASMRSIEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (341)
Q Consensus       132 ~g--~~~i~~~~~~~~~~~~~~~~v~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  206 (341)
                      ++  .+.+++.....        ..... .  ........+++++|++..|+.+..++.|+.||..++............
T Consensus       191 ~~~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g  262 (409)
T 3hrp_A          191 EGTHTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG  262 (409)
T ss_dssp             STTCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS
T ss_pred             CCCceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC
Confidence            55  55555543211        11121 0  112345678999996555666777889999999876533220000000


Q ss_pred             ccCccCCeeeeEEEEEecC-CCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------------CCeEEEEEcCCC
Q 019405          207 SLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDS  270 (341)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~  270 (341)
                      ...   ..+...++|  +| ++.++++-..++.|+.|+....   +..+.++.               .....++++|+|
T Consensus       263 ~~~---~~P~~~ia~--~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          263 SLG---TNPGPYLIY--YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             CCC---CSSCCEEEE--ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             CCC---CCccccEEE--eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            000   011127899  77 4666666677889999987642   33343332               347889999999


Q ss_pred             ceEEEEe-CCCCEEEEECCCCeEEeEEecc--------------ccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          271 FNIYIGN-GSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       271 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      .++++-. .++.|+.||+.+++.. .+.++              .-.....+++++++.++++-..++.|+.+++
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            9777777 7889999998888754 33322              0135789999999888888888888888775

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.41  E-value=1e-09  Score=93.19  Aligned_cols=277  Identities=12%  Similarity=0.118  Sum_probs=165.1

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCC-------CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~   86 (341)
                      .-+++.++.+|.+..++..+. .-.|+.  .....       ...+. .....+    +..+++++.++.|..+|.++|+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG-~~~W~~--~~~~~~~~~~~~~~~~~-~~~~~~----~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDG-KEIWSV--SLAEKDGWFSKEPALLS-GGVTVS----GGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTC-CEEEEE--ECCC---CCSCCCCCEE-EEEEEE----TTEEEEEETTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEEccCC-ceeeee--cCccccccccccCcccc-cCceEe----CCEEEEEcCCCEEEEEECCCCC
Confidence            356777788888877776654 111211  12111       11111 111222    2358888889999999999999


Q ss_pred             chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      .+........         +....... ++        .++.++.++.+..++....+          .+|.......+.
T Consensus       125 ~~W~~~~~~~---------~~~~p~~~-~~--------~v~v~~~~g~l~~~d~~tG~----------~~W~~~~~~~~~  176 (376)
T 3q7m_A          125 VAWQTKVAGE---------ALSRPVVS-DG--------LVLIHTSNGQLQALNEADGA----------VKWTVNLDMPSL  176 (376)
T ss_dssp             EEEEEECSSC---------CCSCCEEE-TT--------EEEEECTTSEEEEEETTTCC----------EEEEEECCC---
T ss_pred             EEEEEeCCCc---------eEcCCEEE-CC--------EEEEEcCCCeEEEEECCCCc----------EEEEEeCCCCce
Confidence            8776654211         11111111 22        77778888888888864332          234443332221


Q ss_pred             ------EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCcc-CccCCeee-eEEEEEecCCCCEEEEEeCCCe
Q 019405          167 ------FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQ  238 (341)
Q Consensus       167 ------~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~~~l~~~~~d~~  238 (341)
                            ....  .+..++.++.++.|..+|..+++.++.......... .......+ .....    .+..++.++.++.
T Consensus       177 ~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~~g~  250 (376)
T 3q7m_A          177 SLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV----VNGVVFALAYNGN  250 (376)
T ss_dssp             --CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE----ETTEEEEECTTSC
T ss_pred             eecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE----ECCEEEEEecCcE
Confidence                  1111  245678888899999999999999887654321100 00000000 11112    3467788888999


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      +..+|..+++. +....  ......+..  ++..+++++.++.|..+|..+++.+..........+.....  .+..|+.
T Consensus       251 l~~~d~~tG~~-~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v  323 (376)
T 3q7m_A          251 LTALDLRSGQI-MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV  323 (376)
T ss_dssp             EEEEETTTCCE-EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE
T ss_pred             EEEEECCCCcE-Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE
Confidence            99999998764 33332  233444444  35578888889999999999999887765321223333333  3567888


Q ss_pred             EeCCCcEEEEEcCCCceeeee
Q 019405          319 CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++.+|.|..+|.++|+.+.+.
T Consensus       324 ~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          324 GDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEE
Confidence            889999999999999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=3.9e-11  Score=110.36  Aligned_cols=160  Identities=10%  Similarity=-0.070  Sum_probs=108.9

Q ss_pred             EEEEecCCCCEEEEeeCCCe-------------EEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          166 AFSKVDISEKFSLFGGKGVE-------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~-------------v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      ..++|+||++.|+.++.+..             |++|++.+++.  ...+....       ++..+..+.|  +|++++|
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~l  241 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-------DPTTFLQSDL--SRDGKYL  241 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-------CTTCEEEEEE--CTTSCCE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC-------CCEEEEEEEE--CCCCCEE
Confidence            57899999999999888765             99999988762  12222211       1245778889  9999999


Q ss_pred             EEEeCCC----eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe---CCCCEEEEECCCCeE--EeEEeccc-
Q 019405          231 VAGTNDH----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL--LGCFIGKC-  300 (341)
Q Consensus       231 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~--~~~~~~~~-  300 (341)
                      +..+.++    .|++|+..+++  ...+..+...+....+ ++|.+++.+.   .++.|.+||+.+++.  ...+..++ 
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  318 (695)
T 2bkl_A          242 FVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS  318 (695)
T ss_dssp             EEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred             EEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence            8877666    67777654433  5566666666677767 5666444443   257899999987653  22333332 


Q ss_pred             cCceeEEEecCCCCEEEEEeCCCcEEEEEcC-CCceeee
Q 019405          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSA  338 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~  338 (341)
                      ...+..++|+ ++.++++...|+..++|.+. +++.+..
T Consensus       319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~  356 (695)
T 2bkl_A          319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRT  356 (695)
T ss_dssp             SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred             CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence            4568888998 67788899999988888665 3554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=1.1e-09  Score=89.82  Aligned_cols=193  Identities=13%  Similarity=0.066  Sum_probs=128.1

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++...++.+..|+...         +.+..+..  ...+.+++++++++++++ . ++.|.+||.++++.........
T Consensus        27 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~   93 (297)
T 3g4e_A           27 LLFVDIPAKKVCRWDSFT---------KQVQRVTM--DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN   93 (297)
T ss_dssp             EEEEETTTTEEEEEETTT---------CCEEEEEC--SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred             EEEEECCCCEEEEEECCC---------CcEEEEeC--CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence            566666778888888642         23344443  467899999999996554 3 5689999998776543222211


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  275 (341)
                      ..     ....++.+++  +++++++++...+         ..-.+|.+..... +..+..+......++|+|+++.|+.
T Consensus        94 ~~-----~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           94 DK-----KNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             TC-----SSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEE
T ss_pred             CC-----CCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEE
Confidence            10     1245788999  8899876654322         2335555543222 3333334345688999999987654


Q ss_pred             -EeCCCCEEEEEC--CCCeE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          276 -GNGSGDLASVDI--RTGKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 -g~~dg~i~iwd~--~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                       .+.++.|.+||+  .+++.     ...+... ......++++++|++.++...++.|..||.++|+.+..+
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence             455788999987  45543     2222222 456789999999988888877889999999999887765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=8.7e-11  Score=94.88  Aligned_cols=187  Identities=7%  Similarity=-0.090  Sum_probs=125.3

Q ss_pred             eeE-EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCC
Q 019405          125 TLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       125 ~l~-~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      .++ +...++.+.+|+....         ....+.......+..++++++++++++.. ++.|.+||....... .+...
T Consensus        37 l~v~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~  105 (270)
T 1rwi_B           37 VYVTSEGMYGRVVKLATGST---------GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD  105 (270)
T ss_dssp             EEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC
T ss_pred             EEEEccCCCCcEEEecCCCc---------ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC
Confidence            444 3366788888875321         11222222224577899999998666655 889999998765432 22211


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                      .        ...+..+++  .++++++++...++.|.+|+..+... ..........+..++++++|+++++...++.|.
T Consensus       106 ~--------~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          106 G--------LNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             S--------CSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             C--------cCCCcceEE--CCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence            1        134788899  78888887777788999997655332 211122234578899999998777777788999


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +||............+ ...+..++++++|.++++...++.|.+||.....
T Consensus       175 ~~~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             EECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EEecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            9998876654333332 3678899999999888887788899999987644

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.39  E-value=4e-13  Score=113.75  Aligned_cols=223  Identities=14%  Similarity=0.145  Sum_probs=119.1

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      +..+++++.||.|+.||..+|+.+..+.. .         .+.+......+.        .+++++.||.+..|+...++
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---------~~~s~p~~~~g~--------~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---------PVLQVPTHVEEP--------AFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-C---------CSCCCC-----C--------CEEECTTTCCEEEC-----C
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-C---------CceecceEcCCC--------EEEEeCCCCEEEEEECCCCc
Confidence            44799999999999999999998877765 1         122222222222        66667889999999875443


Q ss_pred             cccccCCceEEEEEeecCCceEE-EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          145 VSAESSCSTVKSWNVCASGTIAF-SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                              .+..|.......+.+ ..+. ++..+++++.++.|+.||.++|+.++.+..+.             ...+  
T Consensus        71 --------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-------------~~~~--  126 (369)
T 2hz6_A           71 --------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-------------ADSL--  126 (369)
T ss_dssp             --------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------
T ss_pred             --------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------cccc--
Confidence                    222332211111100 0111 34567888889999999999999988776532             1233  


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC---ceEEEEeCCCCEEEEECCCCeEEeEEeccc
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  300 (341)
                      .|++..+++++.|+.|+.||.++++. +..+..+.  .....+.++.   ..+++++.+|.|+.||.++|+.+.++..  
T Consensus       127 ~p~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--  201 (369)
T 2hz6_A          127 SPSTSLLYLGRTEYTITMYDTKTREL-RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY--  201 (369)
T ss_dssp             ------EEEEEEEEEEECCCSSSSSC-CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC--
T ss_pred             cccCCEEEEEecCCEEEEEECCCCCE-EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC--
Confidence            45778899999999999999998774 43333221  1223333332   4677889999999999999999887764  


Q ss_pred             cCceeE-EEecCCCCEEEE--EeCCCcEEEEEcCCCc
Q 019405          301 SGSIRS-IARHPTLPIIAS--CGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       301 ~~~i~~-~~~~~~~~~l~s--~~~dg~v~iwd~~~~~  334 (341)
                      ..++.. ..+++++...+.  ...++.++.+|..+|+
T Consensus       202 ~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          202 ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence            344443 445566643210  0013345555555544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=4.6e-10  Score=92.08  Aligned_cols=213  Identities=12%  Similarity=0.004  Sum_probs=132.6

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~  145 (341)
                      .++++...++.|..||..+++. ..+..         ...+.++.+. +++        .++.+. ++.+.+|+.+.   
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~-~dG--------~l~v~~-~~~l~~~d~~~---   82 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALR-QSG--------GYVATI-GTKFCALNWKE---   82 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEB-TTS--------SEEEEE-TTEEEEEETTT---
T ss_pred             EEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEEC-CCC--------CEEEEE-CCeEEEEECCC---
Confidence            3677777889999999987654 22322         1445555543 333        444444 55677777532   


Q ss_pred             ccccCCceEEEEE-ee---cCCceEEEEecCCCCEEEEeeCC---------CeEEEEECCC-CceeeecCCCCCCccCcc
Q 019405          146 SAESSCSTVKSWN-VC---ASGTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDK-CEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       146 ~~~~~~~~v~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~d---------~~v~i~d~~~-~~~~~~~~~~~~~~~~~~  211 (341)
                            +.+..+. ..   ....+..++++|+|+++++....         ..-.+|.+.. ++.......         
T Consensus        83 ------g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---------  147 (297)
T 3g4e_A           83 ------QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---------  147 (297)
T ss_dssp             ------TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---------
T ss_pred             ------CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---------
Confidence                  2233222 11   12347789999999976654221         2234444432 322221111         


Q ss_pred             CCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcC--CCCce-eEEE---EecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          212 TPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS--AQRRP-VMSF---DFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                       ....+.++|  +|+++.|+ +.+.++.|.+||+.  ++... ...+   ..+......++++++|++.++....+.|..
T Consensus       148 -~~~pngi~~--spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~  224 (297)
T 3g4e_A          148 -VDISNGLDW--SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIR  224 (297)
T ss_dssp             -ESBEEEEEE--CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEE
T ss_pred             -cccccceEE--cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEE
Confidence             123578899  88998664 55567899999974  33310 1112   223345788999999987777777888999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEec-CCCCEEEEEe
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG  320 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~  320 (341)
                      ||..+++.+..+..+ ...+++++|. |+++.|..++
T Consensus       225 ~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          225 LDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             ECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEE
T ss_pred             EcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEc
Confidence            999999999888876 6789999998 8887554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.37  E-value=3e-13  Score=114.52  Aligned_cols=186  Identities=11%  Similarity=0.021  Sum_probs=106.8

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++++.+|.+..||...++          .+|.... +.+.+..+..++..+++++.|+.|+.||.++++.++....+.
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             EEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            78888999999999975433          3455544 445454555677788888899999999999998877665431


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                      ..        .+.+...  ...+..+++++.|+.|+.||..+++. +..+..+.    ...++|++..+++++.++.|+.
T Consensus        80 ~~--------~~~~sp~--~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a  144 (369)
T 2hz6_A           80 PE--------LVQASPC--RSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTITM  144 (369)
T ss_dssp             HH--------HHTTCSC--C-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEEC
T ss_pred             cc--------ccccCce--EecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence            10        0100000  11345677888899999999998875 55554432    2345678889999999999999


Q ss_pred             EECCCCeEEeEEeccccCceeEEEecCCC---CEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||.++|+.+..+..+ .  ....++.++.   ..++.++.||.|+.||.++|+.+.+.
T Consensus       145 ~d~~tG~~~W~~~~~-~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          145 YDTKTRELRWNATYF-D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             CCSSSSSCCCEEEEE-E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             EECCCCCEEEeEecc-c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            999999887766533 1  2333444432   46777889999999999999987653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=2.6e-10  Score=104.69  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=141.5

Q ss_pred             ceeEEEeccCCCCCceEEEE-----ccCCeEEEeeCCCCcchhe-eeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           52 NCVLAASIDDSQNDPLLAVA-----RKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +..++||+    +|++||.+     +.+..|++||+.+++.+.. +..          .....+.|. ..+        .
T Consensus       131 l~~~~~Sp----Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----------~k~~~~~Ws-Dg~--------~  187 (693)
T 3iuj_A          131 LDQLSFSR----DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----------VKFSGISWL-GNE--------G  187 (693)
T ss_dssp             EEEEEECT----TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----------EESCCCEEE-TTT--------E
T ss_pred             EEEEEECC----CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----------ceeccEEEe-CCC--------E
Confidence            33445554    45577743     3335799999999886443 111          001234444 333        5


Q ss_pred             eEEEcccc-------------eeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEeeC----CCeE
Q 019405          126 LLTCTTKG-------------KASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGK----GVEV  186 (341)
Q Consensus       126 l~~~~~~g-------------~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----d~~v  186 (341)
                      |+.++.+.             .+.+|++....      .....++....  ......+.++||+++|+....    ++.|
T Consensus       188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             EEEEESSCCC-------CCCCEEEEEETTSCG------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             EEEEEecCcccccccccCCCcEEEEEECCCCc------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence            55555442             36666654322      11234444322  334678899999998865432    3589


Q ss_pred             EEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCC---CeEEEEEcCCCCc-eeEEEEecCCC
Q 019405          187 NVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND---HQVRLYDTSAQRR-PVMSFDFRETP  260 (341)
Q Consensus       187 ~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~  260 (341)
                      +++|+.++. ....+..+.         ...... +  .+++..|+ ....+   +.|..+|+.++.. ..+.+..|...
T Consensus       262 ~~~d~~~~~~~~~~l~~~~---------~~~~~~-~--~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  329 (693)
T 3iuj_A          262 YVKDLSQENAPLLTVQGDL---------DADVSL-V--DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ  329 (693)
T ss_dssp             EEEETTSTTCCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             EEEECCCCCCceEEEeCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC
Confidence            999997763 233333222         112222 3  34455544 44333   6799999987542 13556667666


Q ss_pred             eEEEEEcCCCceEEEEeCCC---CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC----CcEEEEEcCCC
Q 019405          261 IKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTR  333 (341)
Q Consensus       261 v~~~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~  333 (341)
                      +.  .|+++++.|+....++   .|++||+..+ ....+.....+.+..+.+++++..|+....+    +.|+.||+.++
T Consensus       330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          330 VL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            65  8899998887766544   6899998754 4444543324567788888888866555444    78999999877


Q ss_pred             ce
Q 019405          334 QL  335 (341)
Q Consensus       334 ~~  335 (341)
                      +.
T Consensus       407 ~~  408 (693)
T 3iuj_A          407 AI  408 (693)
T ss_dssp             CE
T ss_pred             eE
Confidence            53

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=2.8e-09  Score=90.51  Aligned_cols=260  Identities=11%  Similarity=0.052  Sum_probs=155.3

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -+++.++.+|.+..++..+.     +..-++.............      +..+++++.++.|..+|..+|+.+..+...
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVVS------DGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            45677777888877776654     3321221111111111111      235888899999999999999888776652


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCce-----E---
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI-----A---  166 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i-----~---  166 (341)
                      .+....   ........ . .+        .++.+..++.+..++.....          .+|......+-     .   
T Consensus       173 ~~~~~~---~~~~~~~~-~-~~--------~v~~g~~~g~l~~~d~~tG~----------~~w~~~~~~~~~~~~~~~~~  229 (376)
T 3q7m_A          173 MPSLSL---RGESAPTT-A-FG--------AAVVGGDNGRVSAVLMEQGQ----------MIWQQRISQATGSTEIDRLS  229 (376)
T ss_dssp             C--------CCCCCCEE-E-TT--------EEEECCTTTEEEEEETTTCC----------EEEEEECCC-----------
T ss_pred             CCceee---cCCCCcEE-E-CC--------EEEEEcCCCEEEEEECCCCc----------EEEEEecccCCCCccccccc
Confidence            111000   00000111 1 22        67777778888888764332          23433221110     0   


Q ss_pred             EEEecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 019405          167 FSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (341)
Q Consensus       167 ~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~  244 (341)
                      .+...|  .+..++.++.++.+..+|.++++.++......           ...+..    ++..++.++.++.|..+|.
T Consensus       230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------~~~~~~----~~~~l~~~~~~g~l~~~d~  294 (376)
T 3q7m_A          230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-----------VNDFIV----DGNRIYLVDQNDRVMALTI  294 (376)
T ss_dssp             CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-----------EEEEEE----ETTEEEEEETTCCEEEEET
T ss_pred             ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-----------CCCceE----ECCEEEEEcCCCeEEEEEC
Confidence            011111  24677778889999999999999888766422           333444    4667888888999999999


Q ss_pred             CCCCceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE-EEecCCCCEEEEEeCC
Q 019405          245 SAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLD  322 (341)
Q Consensus       245 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~s~~~d  322 (341)
                      .+++. +..... ....+.....  .+..|++++.+|.|+++|..+++.+..+... ...+.. ...  .+..|+.++.+
T Consensus       295 ~tG~~-~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~~~  368 (376)
T 3q7m_A          295 DGGVT-LWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQAKD  368 (376)
T ss_dssp             TTCCE-EEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEBTT
T ss_pred             CCCcE-EEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEeCC
Confidence            98774 433331 1222223333  2457888999999999999999998877653 333332 222  24577788899


Q ss_pred             CcEEEEE
Q 019405          323 SYLRFWD  329 (341)
Q Consensus       323 g~v~iwd  329 (341)
                      |.|+.||
T Consensus       369 G~l~~~~  375 (376)
T 3q7m_A          369 GTVYSIT  375 (376)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEe
Confidence            9999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.32  E-value=1.4e-09  Score=89.87  Aligned_cols=189  Identities=12%  Similarity=0.071  Sum_probs=122.5

Q ss_pred             EcccceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeee-cCC
Q 019405          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWT-AKP  202 (341)
Q Consensus       129 ~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~  202 (341)
                      ...++.+.+|+...         +.+..+..    .....+..+.++++ ++++++.. .+.|.+||.. ++.... ...
T Consensus        42 ~~~~~~i~~~d~~~---------g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~  110 (314)
T 1pjx_A           42 GKPAGEILRIDLKT---------GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD  110 (314)
T ss_dssp             TEECCEEEEECTTT---------CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC
T ss_pred             CCCCCEEEEEeCCC---------CcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc
Confidence            36678888887532         22333322    02356889999998 66555443 4479999988 665432 221


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------------CeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  267 (341)
                      ....     ....+.++++  .++++++++...+               +.|..||.. ++  ...+..+......++++
T Consensus       111 ~~~~-----~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          111 SEGR-----RMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             TTSC-----BCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEE
T ss_pred             CCCc-----cccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEe
Confidence            1110     1134778899  8889887776655               567777765 33  33333333456889999


Q ss_pred             ----CCCceEEEE-eCCCCEEEEECC-CCeE-----EeEEecccc-CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          268 ----PDSFNIYIG-NGSGDLASVDIR-TGKL-----LGCFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       268 ----~~~~~l~~g-~~dg~i~iwd~~-~~~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                          |+++.|+++ ..++.|.+||+. +++.     ...+..+ . ..+..++++++|+++++...++.|.+||.++++.
T Consensus       181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~  259 (314)
T 1pjx_A          181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP  259 (314)
T ss_dssp             ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC
T ss_pred             cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE
Confidence                999766555 567899999986 4542     2223332 2 5678899999999888888889999999987776


Q ss_pred             eeee
Q 019405          336 LSAV  339 (341)
Q Consensus       336 ~~~~  339 (341)
                      +..+
T Consensus       260 ~~~~  263 (314)
T 1pjx_A          260 KMRI  263 (314)
T ss_dssp             SEEE
T ss_pred             eEEE
Confidence            5543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=4e-09  Score=87.70  Aligned_cols=218  Identities=9%  Similarity=-0.077  Sum_probs=133.7

Q ss_pred             EEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccce
Q 019405           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (341)
Q Consensus        55 ~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  134 (341)
                      .+|+++.   +.++++...++.|.+||..+++.. .+..         ...+.++.+.+. +        .++.+..++ 
T Consensus        54 p~~~~~~---~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~d-g--------~l~v~~~~g-  110 (326)
T 2ghs_A           54 PTFDPAS---GTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISD-S--------KQLIASDDG-  110 (326)
T ss_dssp             EEEETTT---TEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEET-T--------EEEEEETTE-
T ss_pred             CeEeCCC---CEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeCC-C--------eEEEEECCC-
Confidence            3455432   236777778899999999876532 2221         134666665443 3        344444444 


Q ss_pred             eEEEEeeecccccccCCceEEEEE-eec---CCceEEEEecCCCCEEEEeeC------CCeEEEEECCCCceeeecCCCC
Q 019405          135 ASMRSIEVTKVSAESSCSTVKSWN-VCA---SGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       135 ~~i~~~~~~~~~~~~~~~~v~~~~-~~~---~~~i~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      +.+|+....         .+..+. ...   ...+..+.++|+|+++++...      .+.|..++  +++.......  
T Consensus       111 l~~~d~~~g---------~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--  177 (326)
T 2ghs_A          111 LFLRDTATG---------VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--  177 (326)
T ss_dssp             EEEEETTTC---------CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--
T ss_pred             EEEEECCCC---------cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--
Confidence            667765322         222221 111   135788999999987665432      24566666  4443221111  


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcC--CC-Cc-eeEEEE---ecCCCeEEEEEcCCCceEEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS--AQ-RR-PVMSFD---FRETPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~~-~~~~~~---~~~~~v~~~~~~~~~~~l~~g  276 (341)
                              ......++|  +++++.++.+ +.++.|.+||+.  ++ .. ....+.   ........++++++|.+.++.
T Consensus       178 --------~~~~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          178 --------ISIPNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             --------ESSEEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             --------CcccCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence                    022567889  8899876554 457899999986  44 21 012222   123456789999999877777


Q ss_pred             eCCCCEEEEECCCCeEEeEEeccccCceeEEEec-CCCCEEEEEe
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG  320 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~  320 (341)
                      ..++.|..||. +++.+..+..+ ...+++++|. |++..|+.++
T Consensus       248 ~~~~~v~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          248 WGEGAVDRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ETTTEEEEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEE
T ss_pred             eCCCEEEEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEe
Confidence            67788999998 67777777766 6679999998 8887665444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=4.6e-09  Score=95.72  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=150.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc------cceeEEEEe
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSI  140 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~i~~~  140 (341)
                      .+++++.|+.|..+|..+|+.+..+.......    ...+....... .+        .++.+..      +|.+..+|.
T Consensus       119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----~~~~~~~P~v~-~~--------~v~vg~~~~~~~~~g~v~a~D~  185 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK----PYSITGAPRVV-KG--------KVIIGNGGAEYGVRGFVSAYDA  185 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTS----SCBCCSCCEEE-TT--------EEEECCBCTTTCCBCEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCCCCEeeeeccCCCCC----cceecCCCEEE-CC--------EEEEeCCCCCcCCCCEEEEEEC
Confidence            68889999999999999999887776521100    00011100111 11        3444432      466766665


Q ss_pred             eecccccccCCceEEEEEeec--------------------------------CCceEEEEecCCCCEEEEeeCCC----
Q 019405          141 EVTKVSAESSCSTVKSWNVCA--------------------------------SGTIAFSKVDISEKFSLFGGKGV----  184 (341)
Q Consensus       141 ~~~~~~~~~~~~~v~~~~~~~--------------------------------~~~i~~~~~~~~~~~l~~~~~d~----  184 (341)
                      ...+.          +|....                                ......++++++..+++.++.++    
T Consensus       186 ~tG~~----------~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          186 DTGKL----------AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             TTCCE----------EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCCcE----------EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccc
Confidence            43331          222211                                11112467888888888887765    


Q ss_pred             ---------------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcCC
Q 019405          185 ---------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       185 ---------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~  246 (341)
                                     .|..+|.++++.++.++...................+  ..+++   .++.++.+|.++++|..+
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~--~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEe--ccCCcEEEEEEEECCCCEEEEEECCC
Confidence                           4999999999999887653221111100111111122  12554   688899999999999999


Q ss_pred             CCceeEEEEecC------------CCe------------------------EEEEEcCCCceEEEEe-------------
Q 019405          247 QRRPVMSFDFRE------------TPI------------------------KAVAEEPDSFNIYIGN-------------  277 (341)
Q Consensus       247 ~~~~~~~~~~~~------------~~v------------------------~~~~~~~~~~~l~~g~-------------  277 (341)
                      ++. +.......            .++                        ..++++|+...+++..             
T Consensus       334 G~~-l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~  412 (668)
T 1kv9_A          334 GKL-ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD  412 (668)
T ss_dssp             CCE-EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred             CCE-eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence            874 42222111            000                        1257777766655421             


Q ss_pred             -----------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          278 -----------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       278 -----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                                             .+|.|..||+.+++.+.+...+  .+.....+...+.+++.++.|+.|+.||.++|+
T Consensus       413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence                                   2378999999999998877643  344444555677888889999999999999999


Q ss_pred             eeeee
Q 019405          335 LLSAV  339 (341)
Q Consensus       335 ~~~~~  339 (341)
                      .+.++
T Consensus       491 ~l~~~  495 (668)
T 1kv9_A          491 ALWQF  495 (668)
T ss_dssp             EEEEE
T ss_pred             hheEe
Confidence            98775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.30  E-value=7.5e-10  Score=102.56  Aligned_cols=160  Identities=12%  Similarity=0.024  Sum_probs=107.8

Q ss_pred             EEEEecCCCCEEEEeeCCCe--------------EEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          166 AFSKVDISEKFSLFGGKGVE--------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~--------------v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                      ..++|+|| +.|+.++.++.              |++|++.+++.  ...+....       ++..+..+.|  +|+|++
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~  281 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASV--SSDGRW  281 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEE--CCCCCE
Confidence            46789999 98888776543              88999977652  12222211       1234778889  999999


Q ss_pred             EEEEeCCC-----eEEEEEcCCCCce-eEEEEecCCCeEEEEEcCCCceEEEEeCC----CCEEEEECCCC--eEEeEEe
Q 019405          230 FVAGTNDH-----QVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLGCFI  297 (341)
Q Consensus       230 l~~~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~--~~~~~~~  297 (341)
                      |+..+.++     .|++||+.++... ...+..+...+.... +|+|..|+..+.+    +.|.+||+.++  +....+.
T Consensus       282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~  360 (741)
T 1yr2_A          282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP  360 (741)
T ss_dssp             EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred             EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence            88877544     8999999876322 455665655555553 4888888777654    44999999874  3333343


Q ss_pred             ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC-CCceeee
Q 019405          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSA  338 (341)
Q Consensus       298 ~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~  338 (341)
                      .+ ...+..+.|+ ++.++++...|+..+||.+. +++.+..
T Consensus       361 ~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          361 ES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             CC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred             CC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence            33 5667778887 56688888899987777554 3554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.29  E-value=1.1e-08  Score=85.03  Aligned_cols=189  Identities=8%  Similarity=-0.045  Sum_probs=123.9

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++...++.+..|+...         +.++.+..  ...+.++.++++++++++. . ..|.+||..+++.........
T Consensus        63 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~  129 (326)
T 2ghs_A           63 AWWFNILERELHELHLAS---------GRKTVHAL--PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELES  129 (326)
T ss_dssp             EEEEEGGGTEEEEEETTT---------TEEEEEEC--SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSST
T ss_pred             EEEEECCCCEEEEEECCC---------CcEEEEEC--CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCC
Confidence            566666778888887632         24445543  4578999999999877754 3 459999998876543222111


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-e
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N  277 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~  277 (341)
                      .     .....+..+++  +++++++++...      .+.|..++  +++  +..+..+......++|+|+++.|+.+ +
T Consensus       130 ~-----~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          130 D-----LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             T-----CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             C-----CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence            0     01245888999  889987665442      24566666  333  33333333456789999999876554 4


Q ss_pred             CCCCEEEEECC--CC-eE-----EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          278 GSGDLASVDIR--TG-KL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       278 ~dg~i~iwd~~--~~-~~-----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .++.|.+||+.  ++ +.     ...+... ......++++++|.++++...++.|.+||. +++.+..+
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i  266 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY  266 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEE
Confidence            56889999986  55 32     2222222 345778999999988877767788999998 56665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.29  E-value=4.4e-09  Score=93.93  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCcc-CCeeeeEEEEEecCCCC--
Q 019405          168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIF-TPTWFTSAAFLSIDDHR--  228 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~--  228 (341)
                      ++++++...++.+..+                +.|..+|.++++.++.++.......... ...++. +..  ..+++  
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~--~~~G~~~  316 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQ--PVNGKMT  316 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE--EETTEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eec--ccCCcEE
Confidence            4566666666665532                3699999999999988765322111000 001111 111  23563  


Q ss_pred             -EEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CCe--------------------------EEEEEcC
Q 019405          229 -KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEP  268 (341)
Q Consensus       229 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~  268 (341)
                       .++.++.+|.+.++|..+++. +.......             .++                          ..++++|
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  395 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP  395 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECC
Confidence             577888999999999998874 44433211             111                          2357788


Q ss_pred             CCceEEEEe-------------------------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          269 DSFNIYIGN-------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       269 ~~~~l~~g~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      +..++++..                                     .+|.|..||+.+++.+.++...  ..+....+..
T Consensus       396 ~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t  473 (571)
T 2ad6_A          396 ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYT  473 (571)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEE
T ss_pred             CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEE
Confidence            777776653                                     3478999999999998877643  3333333333


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          312 TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       312 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+..++.++.|+.|+.+|.++|+.+.++
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence            5667777899999999999999998875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=8.1e-10  Score=100.80  Aligned_cols=152  Identities=14%  Similarity=0.046  Sum_probs=103.4

Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCc---c------------------------CccCCeeeeEEEEEecCCC
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---L------------------------GIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~------------------------~~~~~~~v~~~~~~~~~~~  227 (341)
                      ..++.++.+|.|+++|.++++.+..+.......   .                        ......| ..++|  +|+.
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~--dp~~  404 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSF--NPQT  404 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEE--ETTT
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCC-CCceE--cCCC
Confidence            678899999999999999999987665322110   0                        0000011 25677  7777


Q ss_pred             CEEEEEeCC-------------------------------------------CeEEEEEcCCCCceeEEEEecCCCeEEE
Q 019405          228 RKFVAGTND-------------------------------------------HQVRLYDTSAQRRPVMSFDFRETPIKAV  264 (341)
Q Consensus       228 ~~l~~~~~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~~  264 (341)
                      .++++...+                                           +.|..||+.+++. +-.+. +..++...
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~-~~~~~~~g  482 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVE-HVSPWNGG  482 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEE-ESSSCCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-EeecC-CCCCCcCc
Confidence            787775432                                           7899999998774 54544 33445555


Q ss_pred             EEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE-eC----------------CCcEEE
Q 019405          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GL----------------DSYLRF  327 (341)
Q Consensus       265 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~----------------dg~v~i  327 (341)
                      .+...+.+++.++.||.+++||.++++.+.++.........-+.|.++|+.++.. +.                .+.+..
T Consensus       483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~  562 (677)
T 1kb0_A          483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYT  562 (677)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEE
T ss_pred             ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEE
Confidence            5667777888999999999999999999999986523333446677788744332 22                357777


Q ss_pred             EEcC
Q 019405          328 WDIK  331 (341)
Q Consensus       328 wd~~  331 (341)
                      |.+.
T Consensus       563 f~l~  566 (677)
T 1kb0_A          563 FVVG  566 (677)
T ss_dssp             EEET
T ss_pred             Eecc
Confidence            8776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.28  E-value=1.3e-09  Score=91.22  Aligned_cols=237  Identities=13%  Similarity=0.053  Sum_probs=150.7

Q ss_pred             CCCCceEEEEcc-----CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc------
Q 019405           62 SQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------  130 (341)
Q Consensus        62 ~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------  130 (341)
                      .|++..+.+...     ++.|.+.|..+++.+.++..-        ..+  .+.+.+..+        .+.++.      
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--------~~P--~va~spDG~--------~lyVan~~~~r~  102 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--------FLP--NPVVADDGS--------FIAHASTVFSRI  102 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--------SSC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--------CCC--cEEECCCCC--------EEEEEccccccc
Confidence            355557777654     689999999999998888751        122  344444333        454443      


Q ss_pred             ----ccceeEEEEeeecccccccCCceEEEEEeec------CCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceee
Q 019405          131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW  198 (341)
Q Consensus       131 ----~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~  198 (341)
                          .++.+.+||.....        .+..+.+..      +..-..+.++|||++++++..  ++.|.++|+.+++.+.
T Consensus       103 ~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          103 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             ccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence                35778888875433        333333321      124557899999999888763  6899999999999988


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec----CCCeE-EEEEc-CCCce
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIK-AVAEE-PDSFN  272 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~  272 (341)
                      .+....           . ...+  +.....+++.+.||.+.+.++............+    ..++. ...|. ++|++
T Consensus       175 tI~v~g-----------~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~  240 (386)
T 3sjl_D          175 MLDVPD-----------C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  240 (386)
T ss_dssp             EEECCS-----------E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEECCC-----------c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence            876532           1 1123  3345567788889999888887622222211111    12222 24554 67766


Q ss_pred             EEEEeCCCCEEEEECCCCe--EEeEEe---------ccccCceeEEEecCCCCEEEEEeC----------CCcEEEEEcC
Q 019405          273 IYIGNGSGDLASVDIRTGK--LLGCFI---------GKCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK  331 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~--~~~~~~---------~~~~~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~  331 (341)
                      ++ .+.+|.|++.|+.+..  .+..+.         +-.......++++++++.+.....          .+.|.+.|++
T Consensus       241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~  319 (386)
T 3sjl_D          241 VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  319 (386)
T ss_dssp             EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence            65 4558999999997653  333332         111234456888999987766542          2579999999


Q ss_pred             CCceeeee
Q 019405          332 TRQLLSAV  339 (341)
Q Consensus       332 ~~~~~~~~  339 (341)
                      +++.+.++
T Consensus       320 t~kv~~~i  327 (386)
T 3sjl_D          320 TGERLAKF  327 (386)
T ss_dssp             TCCEEEEE
T ss_pred             CCeEEEEE
Confidence            99998876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=3.3e-09  Score=88.88  Aligned_cols=275  Identities=12%  Similarity=-0.036  Sum_probs=161.6

Q ss_pred             ceeeeecC-CC----CeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEE
Q 019405           15 LRALTFDS-LG----LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (341)
Q Consensus        15 ~~~~~~~~-~g----~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~i   79 (341)
                      .+++...+ ++    .+.+++....     +++.++.-...+  .+++++|++    +++++.          .++.|.+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~-----~v~~~i~vG~~P--~i~~spDg~----~lyVan~~~~r~~~G~~~~~Vsv  100 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCG-----VTLGHSLGAFLS--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTT-----EEEEEEEECTTC--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEE
T ss_pred             CeEEEECCccCCccceEEEEECCCC-----eEEEEEeCCCCC--ceEECCCCC----EEEEEcccccccccCCCCCEEEE
Confidence            44554444 33    5557776655     676676544444  688888877    677765          4789999


Q ss_pred             eeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEE--EEeeecccccccCCceEE
Q 019405           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKVSAESSCSTVK  155 (341)
Q Consensus        80 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i--~~~~~~~~~~~~~~~~v~  155 (341)
                      ||+.+++.+.++.......+. .......+.+.+..+        .++++..  +..+.+  +|+..           +.
T Consensus       101 iD~~T~~vv~~I~v~~~~~~~-~g~~P~~ia~SpDGk--------~lyVan~~~~~~v~V~~iD~~t-----------v~  160 (368)
T 1mda_H          101 FDPVTFLPIADIELPDAPRFS-VGPRVHIIGNCASSA--------CLLFFLFGSSAAAGLSVPGASD-----------DQ  160 (368)
T ss_dssp             ECTTTCCEEEEEEETTSCSCC-BSCCTTSEEECTTSS--------CEEEEECSSSCEEEEEETTTEE-----------EE
T ss_pred             EECCCCCEEEEEECCCccccc-cCCCcceEEEcCCCC--------EEEEEccCCCCeEEEEEEchhh-----------ce
Confidence            999999998888652100000 001122344433333        5555543  356767  66542           22


Q ss_pred             EEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCC-----CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE
Q 019405          156 SWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (341)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (341)
                      ....  .+.   ..+.|++ ..+++.+.|+.+.+.|+++     ++......  .  ..... ..+.   .+   +++..
T Consensus       161 ~i~v--~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~--~i~vg-~~P~---~~---~~~~~  224 (368)
T 1mda_H          161 LTKS--ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--G--AQNCS-SQAA---QA---NYPGM  224 (368)
T ss_dssp             EEEC--SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--T--TSCBC-SCCE---EE---TTTTE
T ss_pred             EEEC--CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--e--eeeCC-CCcc---cc---ccCCE
Confidence            2222  111   1123433 3445566788888888876     33322110  0  00010 1122   23   34455


Q ss_pred             EEEEeCCCeEEEEEcCCCCce-eEEEEec----------CCCeEEEEEcCCCceEEEEeC---------CCCEEEEECCC
Q 019405          230 FVAGTNDHQVRLYDTSAQRRP-VMSFDFR----------ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRT  289 (341)
Q Consensus       230 l~~~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~v~~~~~~~~~~~l~~g~~---------dg~i~iwd~~~  289 (341)
                      ++..+. +.|.+.|....... +..+...          ......++++|+++.++++..         ++.+.++|+.+
T Consensus       225 ~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t  303 (368)
T 1mda_H          225 LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC
Confidence            555555 89999998653211 1111100          011122689999988887643         23566999999


Q ss_pred             CeEEeEEeccccCceeEEEecCCCC-EEEEEe-CCCcEEEEEcCCCceeeee
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++.+..+...  .....++|+|||+ .+++.. .++.|.++|+.+++.+.++
T Consensus       304 ~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          304 GQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             CeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence            9999988764  3688999999998 566666 5999999999999999876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.25  E-value=3.9e-08  Score=83.14  Aligned_cols=234  Identities=9%  Similarity=-0.100  Sum_probs=142.2

Q ss_pred             CCCceEEEEcc--CC---eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-------
Q 019405           63 QNDPLLAVARK--NG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-------  130 (341)
Q Consensus        63 ~~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------  130 (341)
                      |++.++.+...  ..   +|.++|..+++.+.++..-        ..+  .+.+.+..+        .+..+.       
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g--------~~p--~i~~spDg~--------~lyv~n~~~~~~~   91 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG--------FLP--NPVAAHSGS--------EFALASTSFSRIA   91 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC--------CCC--CeEECCCCC--------EEEEEeccccccc
Confidence            33445555543  22   8999999998877665541        122  455555444        555543       


Q ss_pred             ---ccceeEEEEeeecccccccCCceEEEEEee------cCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeee
Q 019405          131 ---TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       131 ---~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~  199 (341)
                         .++.+.++|.....        .+..+...      ....-..+.++|||++|+++..  ++.|.++| .+++.+..
T Consensus        92 rg~~~~~v~viD~~t~~--------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H           92 KGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             cCCCCCeEEEEECCCCc--------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence               35778888875332        22222221      0123457899999999998864  57899999 99988777


Q ss_pred             -cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-----ecCCCe-EEEEEcCCCce
Q 019405          200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPI-KAVAEEPDSFN  272 (341)
Q Consensus       200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~  272 (341)
                       +....             ++.+. ......+++.+.||.+.++|. +++. +....     ....++ ....+.+++..
T Consensus       163 ~i~~~~-------------~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~  226 (373)
T 2mad_H          163 LLSSPT-------------CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             EcCCCc-------------eEEEE-eCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCCE
Confidence             55422             12332 223345667778999999999 6553 32211     112222 23456666555


Q ss_pred             EEEEeCCCCEEEEECCCCe--EEeEEecc---------ccCceeEEEecCCCCEEEEEeC----------CCcEEEEEcC
Q 019405          273 IYIGNGSGDLASVDIRTGK--LLGCFIGK---------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK  331 (341)
Q Consensus       273 l~~g~~dg~i~iwd~~~~~--~~~~~~~~---------~~~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~  331 (341)
                      ++..+.++.+.+.|+....  .+..+...         .......++++|+++.+..+..          ++.|.++|+.
T Consensus       227 ~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~  306 (373)
T 2mad_H          227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL  306 (373)
T ss_pred             EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC
Confidence            4444578899999997552  23333210         0122444789999987766543          3579999999


Q ss_pred             CCceeeee
Q 019405          332 TRQLLSAV  339 (341)
Q Consensus       332 ~~~~~~~~  339 (341)
                      +++.+.++
T Consensus       307 t~~vv~~i  314 (373)
T 2mad_H          307 VGQTSSQI  314 (373)
T ss_pred             CCEEEEEE
Confidence            99988776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=1.5e-08  Score=83.39  Aligned_cols=221  Identities=11%  Similarity=0.013  Sum_probs=135.2

Q ss_pred             eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-c
Q 019405           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T  131 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  131 (341)
                      ...+|++++.   .+++++..++.|..|+. +++. ..+...        ...+..+.+ ..++        .++++. .
T Consensus        48 egp~~~~~g~---~l~~~d~~~~~i~~~~~-~g~~-~~~~~~--------~~~~~gl~~-d~dG--------~l~v~~~~  105 (305)
T 3dr2_A           48 EGPAWWEAQR---TLVWSDLVGRRVLGWRE-DGTV-DVLLDA--------TAFTNGNAV-DAQQ--------RLVHCEHG  105 (305)
T ss_dssp             EEEEEEGGGT---EEEEEETTTTEEEEEET-TSCE-EEEEES--------CSCEEEEEE-CTTS--------CEEEEETT
T ss_pred             cCCeEeCCCC---EEEEEECCCCEEEEEeC-CCCE-EEEeCC--------CCccceeeE-CCCC--------CEEEEECC
Confidence            3455665543   15677778899999998 4542 333321        133444444 3333        444443 4


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeec----CCceEEEEecCCCCEEEE----eeC-------------CCeEEEEE
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLF----GGK-------------GVEVNVWD  190 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~v~i~d  190 (341)
                      ++.+..|+.+          +.+..+....    ...+..+.++++|++.++    |..             .+.|..||
T Consensus       106 ~~~v~~~~~~----------g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A          106 RRAITRSDAD----------GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             TTEEEEECTT----------SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             CCEEEEECCC----------CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            4677777642          2222221111    134567899999998886    432             25688888


Q ss_pred             CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEEEEcCCCCce-eEEEE-ecCCCeE
Q 019405          191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLYDTSAQRRP-VMSFD-FRETPIK  262 (341)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~-~~~~~-~~~~~v~  262 (341)
                      ..+++..... ..          .....++|  +|+++.|+.+...      +.|.+|++...... ...+. .......
T Consensus       176 ~~~g~~~~~~-~~----------~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd  242 (305)
T 3dr2_A          176 PDGSPLQRMA-DL----------DHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD  242 (305)
T ss_dssp             SSSCCCEEEE-EE----------SSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred             CCCCcEEEEe-cC----------CCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence            7666543322 11          22567899  8999987777665      78999998754310 11111 1223455


Q ss_pred             EEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCC
Q 019405          263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       263 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                      .++++++|++ .++..+ .|.+|+. +++.+..+..+ . .+..++|.|+++.|..++.++
T Consensus       243 gi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          243 GFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             SEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred             eEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence            7899999984 444444 4999998 57777777765 3 588999999998888777664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=2e-09  Score=98.38  Aligned_cols=79  Identities=9%  Similarity=0.033  Sum_probs=57.9

Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      +|.|+.||+.+++. +-.+..+. +...-.+...+.+++.|+.||.++.||.++|+.+.+++........-+.|..+|+.
T Consensus       454 ~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          454 SGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceeEEEEECCCCCe-EeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            37899999999875 55555443 34444556677789999999999999999999999988652222344677788874


Q ss_pred             E
Q 019405          316 I  316 (341)
Q Consensus       316 l  316 (341)
                      +
T Consensus       532 y  532 (689)
T 1yiq_A          532 Y  532 (689)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.22  E-value=4.6e-08  Score=87.43  Aligned_cols=168  Identities=15%  Similarity=0.145  Sum_probs=105.6

Q ss_pred             EEecCCCCEEEEeeCC----------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---C
Q 019405          168 SKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---R  228 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d----------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~  228 (341)
                      .+++++..+++.+..+                +.|..+|.++++.++.++................-+... ..++   .
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKARK  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEEE
Confidence            4556677777776654                389999999999998877643221111000011111220 1456   4


Q ss_pred             EEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CCe--------------------------EEEEEcCC
Q 019405          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEPD  269 (341)
Q Consensus       229 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~  269 (341)
                      .++.++.+|.+.++|.++++. +.......             .++                          ..++++|+
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGAL-VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEECCCcEEEEEECCCCCE-eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            677788999999999998874 44333110             111                          13566666


Q ss_pred             CceEEEEe---------------------------------------CCCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          270 SFNIYIGN---------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       270 ~~~l~~g~---------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ..++++..                                       ..|.|..||+.+++.+.+.+..  .+...-...
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~  481 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMA  481 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceE
Confidence            55554421                                       3478999999999988777532  222221222


Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          311 PTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       311 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..+.+++.++.|+.++.||.++|+.+.++
T Consensus       482 tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence            35667777999999999999999998775

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.22  E-value=1.2e-08  Score=87.47  Aligned_cols=189  Identities=9%  Similarity=-0.091  Sum_probs=121.5

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~  202 (341)
                      .+++...++.+++|+.+.         +.+..+... ..... ++++++++.|+++..++  .|.+++...+.....+..
T Consensus       144 lyv~d~~~~~I~~id~~~---------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~  212 (409)
T 3hrp_A          144 VLAYQRDDPRVRLISVDD---------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ  212 (409)
T ss_dssp             EEEEETTTTEEEEEETTT---------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred             EEEEecCCCcEEEEECCC---------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence            555556667888887632         234433322 22333 89999999988887765  799999876544333200


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE-----EecCCC--eEEEEEcCC-CceEE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-----DFRETP--IKAVAEEPD-SFNIY  274 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~--v~~~~~~~~-~~~l~  274 (341)
                      ....     ....+.++++  +|++..|+.+..++.|+.||..+...  ..+     .++...  ...++|+|+ +.+++
T Consensus       213 ~~~~-----~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          213 LGST-----FSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             CCTT-----SCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             ccch-----hcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            0000     1134678899  78555566677788999999987542  222     111112  238999995 55566


Q ss_pred             EEeCCCCEEEEECCCCeEEeEEeccc--------------cCceeEEEecCCCCEEEEEe-CCCcEEEEEcCCCce
Q 019405          275 IGNGSGDLASVDIRTGKLLGCFIGKC--------------SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQL  335 (341)
Q Consensus       275 ~g~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~  335 (341)
                      +-...+.|+.|+....  +..+.++.              -.....++++|+|.++++-. .++.|+.|++.+|+.
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            6667788999997643  22333321              13478899999999888877 889999999877764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=3e-09  Score=88.40  Aligned_cols=260  Identities=14%  Similarity=0.078  Sum_probs=152.1

Q ss_pred             CceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        14 ~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      .-++..++.+|.+..++ .+.     +....+......+..+....+    + .|..++.+  |..+|. +++.+..+..
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g-----~~~~~~~~~~~~~~~~~~~~~----g-~l~v~t~~--l~~~d~-~g~~~~~~~~   95 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDG-----SVKWFFKSGEIIECRPSIGKD----G-TIYFGSDK--VYAINP-DGTEKWRFDT   95 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTS-----CEEESSCGGGEEEECCEETTT----T-EECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred             CCeEEEEcCCCEEEEEC-CCC-----cEEEEEecCCCcccceEEecC----C-cEEEecCc--EEEECC-CCcEEEEEEC
Confidence            34566777777777777 443     332222212222222222222    2 36666655  888886 6666555443


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeec-CCceEEEEecC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDI  172 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-~~~i~~~~~~~  172 (341)
                      ..        .........  .+        .+..++.++.+..++.. .         . ..|.... ...+.++...+
T Consensus        96 ~~--------~~~~~~~~~--~~--------~l~v~t~~~~l~~~d~~-g---------~-~~~~~~~~~~~~~~~~~~~  146 (330)
T 3hxj_A           96 KK--------AIVSDFTIF--ED--------ILYVTSMDGHLYAINTD-G---------T-EKWRFKTKKAIYATPIVSE  146 (330)
T ss_dssp             -------------CCEEEE--TT--------EEEEECTTSEEEEECTT-S---------C-EEEEEECSSCCCSCCEECT
T ss_pred             CC--------CcccCceEE--CC--------EEEEEecCCEEEEEcCC-C---------C-EEEEEcCCCceeeeeEEcC
Confidence            11        111111111  33        77788888888877753 1         2 2343332 23345556666


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  252 (341)
                      ++. +..++.++.|..+|.. ++..+.+....         ..+.++..  .+++.+ ..++  +.|..+| .+++. +.
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--d~~g~l-~v~t--~~l~~~d-~~g~~-~~  208 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASI--GKDGTI-YFGS--DKVYAIN-PDGTE-KW  208 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTCCE-EEES--SSEEEEC-TTSCE-EE
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEE--cCCCEE-EEEe--CEEEEEC-CCCcE-EE
Confidence            666 5557778899999998 77766655332         22455566  566654 4454  7899999 55543 44


Q ss_pred             EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       253 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      ........+.++...++|. |.+++.++.|..+|. +++.+..+... ...+..+...+++ .|..++.+|.|..+|. +
T Consensus       209 ~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~  283 (330)
T 3hxj_A          209 NFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSYDGHLYAINP-D  283 (330)
T ss_dssp             EECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTS-CEEEECTTCEEEEECT-T
T ss_pred             EEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCC-eEEEecCCCCEEEECC-C
Confidence            4544555678888888874 556677888888874 56666666544 4445556665555 4556777888999996 6


Q ss_pred             Cceeeee
Q 019405          333 RQLLSAV  339 (341)
Q Consensus       333 ~~~~~~~  339 (341)
                      ++.+..+
T Consensus       284 g~~~~~~  290 (330)
T 3hxj_A          284 GTEKWNF  290 (330)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            7765543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=3.7e-08  Score=82.47  Aligned_cols=261  Identities=8%  Similarity=-0.055  Sum_probs=147.4

Q ss_pred             CccceeeeccCCCCCceeEEEeccCCCCCceEEEEc--cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec
Q 019405           37 GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (341)
Q Consensus        37 g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (341)
                      |..+++..+.   .....+++++++.    ++++..  .++.++||.+.+++. ..+.... .....+...+.++.+-+.
T Consensus         7 g~~~~v~~~~---~~p~~va~~~~g~----~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~-~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A            7 DRLEVVAELS---LAPGNITLTPDGR----LFLSLHQFYQPEMQVAELTQDGL-IPFPPQS-GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             -CCEEEEEES---SCEEEEEECTTSC----EEEEECGGGCCSCSEEEEETTEE-EESCCCC-SSCCCCCSCEEEEEECSS
T ss_pred             ceeEEEEEcC---CCcceEEECCCCC----EEEEeCCCCCCceEEEEECCCCe-ecCCCcc-cCcccceeEeeEEEEcCC
Confidence            3334444553   4566777776665    666653  234356666544432 2221100 001112344555555333


Q ss_pred             cccccccccceeEEEc-c-----cceeEEEEeeecccccccCCceEEEEEeec-----CCceEEEEecCCCCEE-EEee-
Q 019405          115 QREESSSRSRTLLTCT-T-----KGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFS-LFGG-  181 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~-~-----~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-----~~~i~~~~~~~~~~~l-~~~~-  181 (341)
                       +        .|..+. .     ++.+.+|++....        .++.+....     ...+..+++++++..+ ++.. 
T Consensus        78 -g--------~L~v~D~g~~~~~~~~i~~~d~~tg~--------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           78 -G--------IVWMLDNGNQSKSVPKLVAWDTLNNQ--------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             -S--------EEEEEECHHHHTSCCEEEEEETTTTE--------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             -C--------cEEEEcCCCCcCCCCeEEEEECCCCe--------EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence             2        344333 2     4677788764322        345554421     2346789999865454 4444 


Q ss_pred             --CCCeEEEEECCCCceeeecCCCCCC-c----cCcc---------------CCeeeeEEEEEecCCCCEEEEEeCCC-e
Q 019405          182 --KGVEVNVWDLDKCEKIWTAKPPPKN-S----LGIF---------------TPTWFTSAAFLSIDDHRKFVAGTNDH-Q  238 (341)
Q Consensus       182 --~d~~v~i~d~~~~~~~~~~~~~~~~-~----~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~d~-~  238 (341)
                        .++.|.+||+.+++..+.+..+... .    +...               ....+..+++  +|+++.|+.+..++ .
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~--s~dg~~ly~~~~~~~~  218 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL--DAENEWLYLSPMHSTS  218 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE--CTTSCEEEEEESSCSE
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe--ccCCCEEEEEeCCCCe
Confidence              5789999999988776655432110 0    0000               0123678999  89998888877665 5


Q ss_pred             EEEEEcC---CCC----cee--EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405          239 VRLYDTS---AQR----RPV--MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       239 i~iwd~~---~~~----~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      +..++..   .+.    ...  ....++......++++++|.++++...++.|.+||..+++..............+++|
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          219 MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            5555432   110    000  0122344456679999999988888889999999996676543333222456889999


Q ss_pred             cCCCCEEEEEeCCCcE
Q 019405          310 HPTLPIIASCGLDSYL  325 (341)
Q Consensus       310 ~~~~~~l~s~~~dg~v  325 (341)
                      .+++.++++.+..+.+
T Consensus       299 ~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CTTSCEEEEECCGGGS
T ss_pred             CCCCcEEEEeCccccc
Confidence            9999888877644433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=1.3e-08  Score=86.69  Aligned_cols=211  Identities=11%  Similarity=0.106  Sum_probs=132.1

Q ss_pred             eeEEEeccCCCCCceEEEEcc--CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           53 CVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      ..+++++|++    +|+++..  ++.|.+.|+.+++.+.++..          ...  ....+....       .+++.+
T Consensus       180 ~~~~~spDGk----~lyV~n~~~~~~VsVID~~t~kvv~~I~v----------~g~--~~~~p~g~~-------~~v~~~  236 (426)
T 3c75_H          180 WMNALTPDNK----NLLFYQFSPAPAVGVVDLEGKTFDRMLDV----------PDC--YHIFPASPT-------VFYMNC  236 (426)
T ss_dssp             GGSEECTTSS----EEEEEECSSSCEEEEEETTTTEEEEEEEC----------CSE--EEEEEEETT-------EEEEEE
T ss_pred             ceEEEcCCCC----EEEEEecCCCCeEEEEECCCCeEEEEEEc----------CCc--eeeccCCCc-------EEEEEc
Confidence            3456666665    7887763  58899999999998887765          111  222232221       667777


Q ss_pred             ccceeEEEEeeecccccccCCceE-EEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee--ecCC--CCC
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKP--PPK  205 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~--~~~  205 (341)
                      .||.+.+.+........     .. ..++.........+.+.+++..++.....+.|.+.|........  .+..  ...
T Consensus       237 ~dG~~~~V~~~~~~v~~-----~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~  311 (426)
T 3c75_H          237 RDGSLARVDFADGETKV-----TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAE  311 (426)
T ss_dssp             TTSSEEEEECCTTCCEE-----EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTT
T ss_pred             CCCCEEEEECCCCcEEE-----EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccc
Confidence            88888777762222110     00 12222222112245678888887777788999999986543221  1110  000


Q ss_pred             CccCccCCeeeeEEEEEecCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-eEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIY  274 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  274 (341)
                      ..... .+.....+++  +++++++++...          ++.|.++|..+.+. +..+.... ....+.|+|+++ +++
T Consensus       312 i~~g~-~p~g~~~va~--s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv-v~~I~vg~-~P~gia~spDg~~~ly  386 (426)
T 3c75_H          312 RADDW-RPGGWQQTAY--HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER-INKIELGH-EIDSINVSQDAEPLLY  386 (426)
T ss_dssp             GGGTE-EECSSSCEEE--EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEEE-EECEEEECCSSSCEEE
T ss_pred             ccccc-ccCCceeeEE--cCCCCEEEEEecccccccccCCCCEEEEEECCCCeE-EEEEECCC-CcCeEEEccCCCEEEE
Confidence            00000 0111223677  778887776642          35799999999775 66665432 467899999998 888


Q ss_pred             EEe-CCCCEEEEECCCCeEEeEE
Q 019405          275 IGN-GSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       275 ~g~-~dg~i~iwd~~~~~~~~~~  296 (341)
                      +.. .++.|.++|+.+++.+.++
T Consensus       387 v~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEcCCCCeEEEEECCCCCEEEEe
Confidence            888 5899999999999999887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.15  E-value=7.7e-08  Score=81.40  Aligned_cols=173  Identities=12%  Similarity=0.045  Sum_probs=111.3

Q ss_pred             ceeEEEEeeecccccccCCceEEEEEeecCC--ceEEEEecCCCCEEEEee-------------------CCCeEEEEEC
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASG--TIAFSKVDISEKFSLFGG-------------------KGVEVNVWDL  191 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~--~i~~~~~~~~~~~l~~~~-------------------~d~~v~i~d~  191 (341)
                      |.+.+.|.+..        ..+..|......  .-..+.|+|+++.+++..                   .+.+|.+||+
T Consensus       164 g~v~vlD~~T~--------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          164 GGILMLDHYSF--------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             CEEEEECTTTC--------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             CeEEEEECCCC--------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            55666664422        245566543222  234577899999888874                   3679999999


Q ss_pred             CCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe------CCCeEEEEEcCCCCc-eeEEE--Eec-----
Q 019405          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQRR-PVMSF--DFR-----  257 (341)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~-~~~~~--~~~-----  257 (341)
                      .+++.+..+......       .....+.|..+|+++++.+++      .+++|.+|....++- ..+.+  ...     
T Consensus       236 ~~~k~~~tI~vg~~g-------~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~  308 (462)
T 2ece_A          236 RKRKRIHSLTLGEEN-------RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN  308 (462)
T ss_dssp             TTTEEEEEEESCTTE-------EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred             CCCcEeeEEecCCCC-------CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence            988777766653110       224455564488999888776      456888776654321 01111  110     


Q ss_pred             -----------CCCeEEEEEcCCCceEEEEeC-CCCEEEEECC---CCeEEeEEecccc-------------CceeEEEe
Q 019405          258 -----------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR---TGKLLGCFIGKCS-------------GSIRSIAR  309 (341)
Q Consensus       258 -----------~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~---~~~~~~~~~~~~~-------------~~i~~~~~  309 (341)
                                 ......+.+||||++|+++.. .+.|.+||+.   +.+++..+.....             +.-..+++
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l  388 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI  388 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred             ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence                       134678999999999988775 6889999985   3356655543200             12578999


Q ss_pred             cCCCCEEEEEe
Q 019405          310 HPTLPIIASCG  320 (341)
Q Consensus       310 ~~~~~~l~s~~  320 (341)
                      +|||++|+.+.
T Consensus       389 SpDGk~LyVaN  399 (462)
T 2ece_A          389 SRDGRRVYVTN  399 (462)
T ss_dssp             CTTSSEEEEEC
T ss_pred             cCCCCEEEEEc
Confidence            99999988887

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=4.5e-08  Score=80.52  Aligned_cols=190  Identities=13%  Similarity=0.043  Sum_probs=121.2

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++...++.+..|+.          ++.+..+.. ....+..++++++++++++...++.|..|+.. ++.........
T Consensus        59 l~~~d~~~~~i~~~~~----------~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~  126 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWRE----------DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA  126 (305)
T ss_dssp             EEEEETTTTEEEEEET----------TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred             EEEEECCCCEEEEEeC----------CCCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence            5677777888888863          223444443 34568899999999977766666789999986 54322211111


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEE----EeC-------------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEc
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  267 (341)
                      ..     ....+..+++  .+++++.++    |..             .+.|..||..+++.  ..+. .......++|+
T Consensus       127 ~~-----~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          127 GK-----RLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFS  196 (305)
T ss_dssp             TE-----ECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEEC
T ss_pred             CC-----ccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEc
Confidence            00     0133667888  889988776    332             25677788765543  2222 33456789999


Q ss_pred             CCCceEEEEeCC------CCEEEEECCCCeEE--eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       268 ~~~~~l~~g~~d------g~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |+++.|+.+...      +.|++|++..+.+.  ..+..........++++++|++.++. .+ .|.+|+. +++.+..+
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~  273 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHI  273 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEE
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEE
Confidence            999988877665      68999998765421  11211113445678999999955544 44 4999998 46666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.14  E-value=2.9e-08  Score=82.40  Aligned_cols=218  Identities=11%  Similarity=0.016  Sum_probs=137.9

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .|..++.++.|..+|.. ++.........        ..+..+ ....++        .+..++.++.+..++.. ..  
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--------~~~~~~-~~~~~g--------~l~vgt~~~~l~~~d~~-g~--  167 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKK--------AIYATP-IVSEDG--------TIYVGSNDNYLYAINPD-GT--  167 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSS--------CCCSCC-EECTTS--------CEEEECTTSEEEEECTT-SC--
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCC--------ceeeee-EEcCCC--------EEEEEcCCCEEEEECCC-CC--
Confidence            58888889999999997 76655544311        111112 222233        67778888888888754 21  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                            .+..+.. ....+.++..++++.+.+. +  +.|..+| .+++..+......         ..+.++..  .++
T Consensus       168 ------~~~~~~~-~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~---------~~~~~~~~--~~~  225 (330)
T 3hxj_A          168 ------EKWRFKT-NDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGY---------WTVTRPAI--SED  225 (330)
T ss_dssp             ------EEEEEEC-SSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSS---------CCCSCCEE--CTT
T ss_pred             ------EeEEEec-CCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCC---------cceeceEE--CCC
Confidence                  1222221 2334566677777775554 4  7799999 7777776665432         23666677  566


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      + .|..++.++.|..+|.. ++. +..+......+..+.+.+++ .|.+++.+|.|..+|. +++.+..+... ...+.+
T Consensus       226 g-~l~v~t~~~gl~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~  299 (330)
T 3hxj_A          226 G-TIYVTSLDGHLYAINPD-GTE-KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIAT  299 (330)
T ss_dssp             S-CEEEEETTTEEEEECTT-SCE-EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSC
T ss_pred             C-eEEEEcCCCeEEEECCC-CCE-eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-Cccccc
Confidence            5 55666778888888743 343 45555444444455665555 5677888889999996 78777777654 566778


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      +...+++.+ ..++.+|.+++...+..+
T Consensus       300 ~~~d~~g~l-~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          300 PVIDENGTI-YFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             CEECTTCCE-EEECTTSCEEEEEC----
T ss_pred             eEEcCCCEE-EEEcCCCeEEEEeccccc
Confidence            888777764 457789999998776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.11  E-value=5.2e-08  Score=85.33  Aligned_cols=238  Identities=12%  Similarity=0.032  Sum_probs=153.3

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCC---------------------------------CCCceeeEeeeec
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP---------------------------------EDDGIVGLHLFKR  114 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~  114 (341)
                      +.+|+..|.++|+-+.+++.+..+..+......+                                 .+..-..+..-+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            7778899999999999888887777654333221                                 0000011111000


Q ss_pred             cccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe-c-CCCCEEEEee-----------
Q 019405          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG-----------  181 (341)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~-~-~~~~~l~~~~-----------  181 (341)
                      ..    .+...++....++.+.+.++...+        .+.+..+........+++ + |+++++++++           
T Consensus        98 ~~----DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A           98 KY----DGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EE----EEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             Cc----CCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            00    011134444455667777765433        445555555567788887 5 8999998884           


Q ss_pred             -------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----------------
Q 019405          182 -------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----------------  237 (341)
Q Consensus       182 -------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----------------  237 (341)
                             .++.+.+.|.++.+..+++.....          ...+++  +|+++++++.+.+.                 
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~----------pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGN----------LDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEEEEESSC----------CCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccccccccCceEEEEECCCCeEEEEEEeCCC----------ccceEE--CCCCCEEEEEecCcccCcchhhccccccceE
Confidence                   245799999999888887664321          233456  77888888777543                 


Q ss_pred             ---------------------eEEEEEcCC--CCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCe--
Q 019405          238 ---------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK--  291 (341)
Q Consensus       238 ---------------------~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~--  291 (341)
                                           .|.+.|.++  ++..+..+... ....++.++|||+++++++ .++.|.++|+.+.+  
T Consensus       234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~  312 (595)
T 1fwx_A          234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  312 (595)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence                                 366777765  33213344332 2456799999999877666 57899999998653  


Q ss_pred             ----------EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          292 ----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       292 ----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                                .......  ......++|+|+|...++.-.|++|.+||+.+
T Consensus       313 ~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          313 FYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             HHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                      3334432  35678899999995556667899999999987

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.07  E-value=2.5e-07  Score=82.83  Aligned_cols=167  Identities=15%  Similarity=0.154  Sum_probs=105.9

Q ss_pred             EEecCCCCEEEEeeC--------------------C----CeEEEEECCCCceeeecCCCCCCccCccC-CeeeeEEEEE
Q 019405          168 SKVDISEKFSLFGGK--------------------G----VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAFL  222 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~--------------------d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~  222 (341)
                      .+++|+..+++.+..                    |    +.|..+|.++++.++.++........... ..++. +...
T Consensus       251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~  329 (582)
T 1flg_A          251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYK  329 (582)
T ss_dssp             CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEE
T ss_pred             ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eeee
Confidence            456677777776552                    2    58999999999999987653221111000 01111 1110


Q ss_pred             ecCCC---CEEEEEeCCCeEEEEEcCCCCceeEEEEecC-------------CC--------------------------
Q 019405          223 SIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TP--------------------------  260 (341)
Q Consensus       223 ~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~--------------------------  260 (341)
                       ..++   ..++.++.+|.++++|..+++. +..+....             .+                          
T Consensus       330 -~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          330 -AKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             -CSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             -cCCCCEEEEEEEECCCceEEEEECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence             1356   3788899999999999998774 44433221             00                          


Q ss_pred             ------eEEEEEcCCCceEEEEe---------------------------------CCCCEEEEECCCCeEEeEEecccc
Q 019405          261 ------IKAVAEEPDSFNIYIGN---------------------------------GSGDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       261 ------v~~~~~~~~~~~l~~g~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~  301 (341)
                            -..++++|+..++++..                                 .+|.|..||+.+++.+.+....  
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--  485 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--  485 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence                  01345666655555432                                 2578999999999988777643  


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .++..-.....+.+++.++.|+.++.||.++|+.+.++
T Consensus       486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            23332222234667888999999999999999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.06  E-value=7.5e-08  Score=76.44  Aligned_cols=171  Identities=12%  Similarity=0.007  Sum_probs=117.4

Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (341)
                      +..+..........+.+++++.+.++.+.  ++.|.++|+.+++.+..+.....        .....+++  . .+.+.+
T Consensus        12 v~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~--~-g~~lyv   80 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTL--L-NEKLYQ   80 (266)
T ss_dssp             EEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEEE
T ss_pred             EEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEE--e-CCEEEE
Confidence            34444332234678999998655554443  57999999999998887654321        11334555  3 234445


Q ss_pred             EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc----cCceeEE
Q 019405          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI  307 (341)
Q Consensus       232 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~  307 (341)
                      +.-.++.+.++|..+.+. +..+......  ...++++|+.++++..++.|.++|..+.+.+..+....    -..++.+
T Consensus        81 ~t~~~~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel  157 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL  157 (266)
T ss_dssp             EETTCSEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEecCCEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence            555688999999998664 6666533111  23355688888887788999999999999888876431    1236788


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|. ++..++..-.++.|.+.|.++++.+.++
T Consensus       158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred             EEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence            888 7766666656789999999999998876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.04  E-value=3.5e-08  Score=86.39  Aligned_cols=242  Identities=12%  Similarity=0.037  Sum_probs=146.3

Q ss_pred             EEEec-cCCCCCceEEEEc-cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeee-ccccccccccceeEEEc-
Q 019405           55 LAASI-DDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCT-  130 (341)
Q Consensus        55 ~~~s~-~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~-  130 (341)
                      ..+|. ++.++|++|.+.. .+++|.+.|+.+.++.+.+..       +.......+.+.. ++..       ++++++ 
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~~-------~v~~~~~  155 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSN-------YVFCNGE  155 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCS-------EEEEEEC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCCc-------EEEEecc
Confidence            45555 6666777766654 467799999999988775543       2223455555533 2221       555553 


Q ss_pred             -----------------ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC---------
Q 019405          131 -----------------TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---------  184 (341)
Q Consensus       131 -----------------~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------  184 (341)
                                       .++.+.+.|.+.          .-..|.+.-++....++++|+|+++++.+.+.         
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~  225 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM  225 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             cccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence                             223445555432          12234443333445677888888888776542         


Q ss_pred             -----------------------------eEEEEECCC--Cce-eeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          185 -----------------------------EVNVWDLDK--CEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       185 -----------------------------~v~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                                                   .|.+.|.++  ++. +..+..          .....++.+  +|||+++++
T Consensus       226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----------g~~PhGv~~--sPDGk~v~V  293 (595)
T 1fwx_A          226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI----------ANNPHGCNM--APDKKHLCV  293 (595)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE----------ESSCCCEEE--CTTSSEEEE
T ss_pred             cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec----------CCCceEEEE--cCCCCEEEE
Confidence                                         244444443  222 112211          123567788  899998776


Q ss_pred             Ee-CCCeEEEEEcCCCC-----------ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC----------C
Q 019405          233 GT-NDHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G  290 (341)
Q Consensus       233 ~~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~  290 (341)
                      ++ .+.+|.++|+.+.+           ..+.... -......++|+|+|...++...|+.|..||+.+          .
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~  372 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD  372 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence            65 57899999998642           1122222 223567899999994444566799999999977          5


Q ss_pred             eEEeEEeccccCce-----eEEEecCCCCEEEEEeC---CCcE----------EEEEcCCCc
Q 019405          291 KLLGCFIGKCSGSI-----RSIARHPTLPIIASCGL---DSYL----------RFWDIKTRQ  334 (341)
Q Consensus       291 ~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~---dg~v----------~iwd~~~~~  334 (341)
                      +.+.++..| ..+-     ..+.++|||++|+++..   |+.+          .++|+..++
T Consensus       373 ~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          373 PIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeEEEeecc-cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            667777765 2221     23356899999988763   4432          889996544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.02  E-value=3.5e-06  Score=67.67  Aligned_cols=234  Identities=7%  Similarity=-0.071  Sum_probs=134.0

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchh-----eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEE
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRV-----AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~  139 (341)
                      |++|+.+.. +.|+.+++.......     .+..        ......++.+-+..+.       .+++-..++.+..++
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~--------~~~~~~gi~~d~~~~~-------ly~~d~~~~~I~~~~   64 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHI--------PAKVIIGLAFDCVDKV-------VYWTDISEPSIGRAS   64 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE--------EEEEEEEEEEETTTTE-------EEEEETTTTEEEEEE
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecC--------CCCcEEEEEEecCCCE-------EEEEECCCCEEEEEe
Confidence            345666663 588889886543211     0110        0123344554433331       455555667888777


Q ss_pred             eeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          140 IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       140 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      ++...         +..+-.........+++++++..++ +-...+.|.++++............         ......
T Consensus        65 ~~g~~---------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~P~~  126 (267)
T 1npe_A           65 LHGGE---------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG---------LVNPRG  126 (267)
T ss_dssp             SSSCC---------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEE
T ss_pred             cCCCC---------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC---------CCCccE
Confidence            64221         1111111124678899998765555 4455678999998643221111111         023577


Q ss_pred             EEEEecCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEE
Q 019405          219 AAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLL  293 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~  293 (341)
                      +++  +|++..|..+..   .+.|..+++....  ...+. ..-.....++++|++..|+.+. ..+.|..+|+......
T Consensus       127 i~v--d~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  202 (267)
T 1npe_A          127 IVT--DPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR  202 (267)
T ss_dssp             EEE--ETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred             EEE--eeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence            888  776555555443   4688888876532  22222 2234568899999876665554 5678999999755443


Q ss_pred             eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..+..  ......++.. ++.++++....+.|..+|..+++.+.++
T Consensus       203 ~~~~~--~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          203 KVLEG--LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEEEC--CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEecC--CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            33332  2334567664 3444444446689999999999888776

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=1.5e-07  Score=73.84  Aligned_cols=170  Identities=9%  Similarity=0.016  Sum_probs=117.4

Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      .++.+..........+.|+ ++.+..+.+.+|  .|+.+|+++++.+..+.....        ..-..++.  . ++.+.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--------~FgeGit~--~-g~~ly  100 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--------YFGEGISD--W-KDKIV  100 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--------cceeEEEE--e-CCEEE
Confidence            3445544334456888898 666667777766  899999999999887764321        11233455  2 23344


Q ss_pred             EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-c---CceeE
Q 019405          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-S---GSIRS  306 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~i~~  306 (341)
                      +..-.++.+.+||..+.+. +.++...... ..+  ++++..|+.+..++.|.++|..+.+.+..+.... .   ..++.
T Consensus       101 ~ltw~~~~v~v~D~~t~~~-~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQ-VRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             EEESSSSEEEEEETTTCCE-EEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECccCcE-EEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            4445688999999998775 7777653322 233  3577788877778889999999999888876531 1   33556


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|. +|...+..-.+..|.+.|.++|+.+..+
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence            7886 7766666657889999999999998776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.99  E-value=1.4e-07  Score=78.86  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=108.8

Q ss_pred             CceEEEEecCCCCEEEEeeC-----CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEe--
Q 019405          163 GTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGT--  234 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~--  234 (341)
                      ..+..++++++++++++-..     ++.|.+||+.+++.+..+..+....   .+...+..+++  ++++.. +++..  
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~v--d~~~g~~yvtd~~~  141 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAV--DLIHNFVYISDPAP  141 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEE--ETTTTEEEEEECCS
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEE--ecCCCEEEEEcCcc
Confidence            46889999999887665433     5789999999988766554321110   11234678888  665444 45544  


Q ss_pred             -CCCeEEEEEcCCCCceeEEEEec-----------------------------CCCeEEEEEcCCCceEEEEeCCC-CEE
Q 019405          235 -NDHQVRLYDTSAQRRPVMSFDFR-----------------------------ETPIKAVAEEPDSFNIYIGNGSG-DLA  283 (341)
Q Consensus       235 -~d~~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~g~~dg-~i~  283 (341)
                       .++.|.+||+.+++. .+.+..|                             ...+..++|+|+++.|+.+..++ .++
T Consensus       142 ~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             GGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             CCCCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence             678999999986542 3322211                             02357899999999888887765 455


Q ss_pred             EEECC---CCe-----EEe--EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          284 SVDIR---TGK-----LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       284 iwd~~---~~~-----~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      .++..   .+.     ...  ...++ ......++++++|.++++...++.|.+||.++|+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            55432   111     000  11122 34567899999999999998999999999856653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.96  E-value=1.3e-06  Score=74.08  Aligned_cols=193  Identities=9%  Similarity=0.018  Sum_probs=125.8

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEE---e--ecC-CceEEEEecCCCCEEEEeeCC------CeEEEEECC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V--CAS-GTIAFSKVDISEKFSLFGGKG------VEVNVWDLD  192 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~---~--~~~-~~i~~~~~~~~~~~l~~~~~d------~~v~i~d~~  192 (341)
                      .++.+..++.|.++|+...+.    .-..++..+   +  ..+ ..-..+...|++ +++++..+      +.|.++|.+
T Consensus        98 l~v~~l~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             EEEccCCCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            677788889999999864431    111333331   1  011 134566778999 66665544      789999999


Q ss_pred             CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-------------------CCCeEEEEEcCCCCceeEE
Q 019405          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------------------NDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~  253 (341)
                      +.+.+..+......      ...-..+.|  +|+++.+++..                   .+.+|.+||+.+++ .+.+
T Consensus       173 T~~v~~~~~~~~~~------~~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~t  243 (462)
T 2ece_A          173 SFEPLGKWEIDRGD------QYLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHS  243 (462)
T ss_dssp             TCCEEEECCSBCTT------CCCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEE
T ss_pred             CCeEEEEEccCCCC------ccccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeE
Confidence            99988887743221      112345677  78999888874                   36899999999854 4666


Q ss_pred             EEecC--CCeEEEEE--cCCCceEEEEeC------CCCEEEEECCCCeE--EeEE--ecc---------------ccCce
Q 019405          254 FDFRE--TPIKAVAE--EPDSFNIYIGNG------SGDLASVDIRTGKL--LGCF--IGK---------------CSGSI  304 (341)
Q Consensus       254 ~~~~~--~~v~~~~~--~~~~~~l~~g~~------dg~i~iwd~~~~~~--~~~~--~~~---------------~~~~i  304 (341)
                      +....  .....+.|  +|+++++++++.      +++|.+|....++.  +..+  ...               .....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            66431  12334555  999999888774      56888776655432  1111  110               01347


Q ss_pred             eEEEecCCCCEEEEEeC-CCcEEEEEcC
Q 019405          305 RSIARHPTLPIIASCGL-DSYLRFWDIK  331 (341)
Q Consensus       305 ~~~~~~~~~~~l~s~~~-dg~v~iwd~~  331 (341)
                      ..+.++|||++|..+.. .+.|.+||+.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            88999999998877764 6799999986

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.94  E-value=1.2e-06  Score=69.47  Aligned_cols=177  Identities=10%  Similarity=-0.041  Sum_probs=117.4

Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                      ++.+.+.|+...+        .+....+........++++  ++.|+ +.-.++.+.++|..+.+.+..+......    
T Consensus        43 ~s~v~~iD~~tg~--------v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~----  108 (266)
T 2iwa_A           43 RSSVRQVALQTGK--------VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD----  108 (266)
T ss_dssp             TCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS----
T ss_pred             CCEEEEEECCCCC--------EEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC----
Confidence            5678888875443        3333333222233345554  44444 4456789999999999988887643110    


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEEeCCCCEEEE
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIGNGSGDLASV  285 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g~~dg~i~iw  285 (341)
                         .  ..+    .+++..++++..++.|.++|..+.+. +..+.-.  .   ...+.+.|. ++...+....++.|.+.
T Consensus       109 ---g--~gl----t~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          109 ---G--WGL----ATDGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             ---C--CEE----EECSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             ---e--EEE----EECCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence               1  123    34777777777889999999988664 5554422  1   135678887 67555555568899999


Q ss_pred             ECCCCeEEeEEeccc------------cCceeEEEecCCCC-EEEEEeCCCcEEEEEcCCC
Q 019405          286 DIRTGKLLGCFIGKC------------SGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       286 d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~  333 (341)
                      |..+++.+..+....            ....+.++|+|+++ +++++...+.|.+.++...
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999988886420            13568999999987 5566667788888887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.93  E-value=3.3e-07  Score=71.94  Aligned_cols=168  Identities=11%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  233 (341)
                      ++.+..........+.++. +.+..+.+.+|.|+.+|+++++.+..+ ... .       .....+++  . .+.+.+..
T Consensus        46 v~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~-------~FgeGit~--~-g~~Ly~lt  112 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLG-N-------IFAEGLAS--D-GERLYQLT  112 (268)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T-------CCEEEEEE--C-SSCEEEEE
T ss_pred             EEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C-------cceeEEEE--e-CCEEEEEE
Confidence            3444433344567888874 667777888899999999999988777 322 1       11234555  2 23444555


Q ss_pred             eCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-c---CceeEEEe
Q 019405          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-S---GSIRSIAR  309 (341)
Q Consensus       234 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~---~~i~~~~~  309 (341)
                      -.++.+.+||..+.+. +.++..... -..++  ++++.|+.+..++.|.++|..+.+.+.++.... .   ..++.+.|
T Consensus       113 w~~~~v~V~D~~Tl~~-~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQR-ERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             SSSCEEEEEETTTTEE-EEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             ccCCEEEEEECCcCcE-EEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            5789999999998764 777765322 23444  567788888889999999999999888876531 1   24567788


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       310 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      . +|..++..-.+..|.+.|.++|+.+..+
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence            7 7766665556889999999999998876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.92  E-value=1e-06  Score=68.53  Aligned_cols=170  Identities=15%  Similarity=0.136  Sum_probs=118.0

Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      -++.+..........+.|++ +.+..+.+..  ..|+.+|+.+++.+..+.....        ..-..+++  . ++.+.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~--~-~~~ly   78 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVA--W-RDRLI   78 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEE--e-CCEEE
Confidence            34455444445678899986 5556666664  4899999999999887765431        11234455  2 34444


Q ss_pred             EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecccc----CceeE
Q 019405          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS----GSIRS  306 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----~~i~~  306 (341)
                      ...-.++.+.+||..+.+. +.++...... ..++  +++..|+++..++.|.++|..+.+.+.++.....    ..++.
T Consensus        79 ~ltw~~~~v~v~D~~tl~~-~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATLTP-RARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEESSSSEEEEEETTTTEE-EEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECCcCcE-EEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            5556789999999998764 7777654322 3444  5677777777889999999999998888765311    34566


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|. +|..++..-.+..|.+.|.++|+.+..+
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence            7775 6666665556789999999999998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.89  E-value=2e-07  Score=85.61  Aligned_cols=155  Identities=12%  Similarity=0.127  Sum_probs=101.6

Q ss_pred             EEEEecCCCCEEEEeeCCC-------------eEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCCCCEE
Q 019405          166 AFSKVDISEKFSLFGGKGV-------------EVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~-------------~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (341)
                      ..++|+ |++.|+.++.+.             .|++|++.+...  ...+.....      ++.+...+.|  +|++++|
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~------~~~~~~~~~~--SpDg~~l  248 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA------QHHRYVGATV--TEDDRFL  248 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG------GCCSEEEEEE--CTTSCEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC------CCeEEEEEEE--cCCCCEE
Confidence            467899 999998887774             399999887542  122222110      1134667888  8999988


Q ss_pred             EEEeC----CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-EEeCC---CCEEEEECCCCeE--EeEEeccc
Q 019405          231 VAGTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGS---GDLASVDIRTGKL--LGCFIGKC  300 (341)
Q Consensus       231 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d---g~i~iwd~~~~~~--~~~~~~~~  300 (341)
                      +....    +..|+++|+.++......+..+....... +++++..|+ ....+   +.|..+|+.++..  ...+..+ 
T Consensus       249 ~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-  326 (693)
T 3iuj_A          249 LISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-  326 (693)
T ss_dssp             EEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-
T ss_pred             EEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-
Confidence            65443    35899999987643466677676666555 566665554 44443   5799999987654  2345555 


Q ss_pred             cCceeEEEecCCCCEEEEEeC-CC--cEEEEEcCCC
Q 019405          301 SGSIRSIARHPTLPIIASCGL-DS--YLRFWDIKTR  333 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~-dg--~v~iwd~~~~  333 (341)
                      ...+.  .|+++++.|+.... ++  .|++||+..+
T Consensus       327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            44444  88999987776654 44  6899998744

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=1.3e-07  Score=79.27  Aligned_cols=242  Identities=9%  Similarity=0.026  Sum_probs=138.4

Q ss_pred             CCCeEEEEEecCccCccceeeeccCC-------CCCceeEEEeccCCCCCceEEEEcc--CCeEEE--eeCCCCcchhee
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDP-------HSSNCVLAASIDDSQNDPLLAVARK--NGLTDI--LNPLNGDLRVAI   91 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~   91 (341)
                      ++.|.+|++...     +++.++.-+       ......+++++|++    +|+++..  +..|.+  +|+.+   +.++
T Consensus        95 ~~~VsviD~~T~-----~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk----~lyVan~~~~~~v~V~~iD~~t---v~~i  162 (368)
T 1mda_H           95 TDYVEVFDPVTF-----LPIADIELPDAPRFSVGPRVHIIGNCASSA----CLLFFLFGSSAAAGLSVPGASD---DQLT  162 (368)
T ss_dssp             EEEEEEECTTTC-----CEEEEEEETTSCSCCBSCCTTSEEECTTSS----CEEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred             CCEEEEEECCCC-----CEEEEEECCCccccccCCCcceEEEcCCCC----EEEEEccCCCCeEEEEEEchhh---ceEE
Confidence            455666666655     455554211       02344677777776    7887764  467999  99976   3444


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceE-----EEEEeecCCceE
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV-----KSWNVCASGTIA  166 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v-----~~~~~~~~~~i~  166 (341)
                      ..-         +.   ....+....       .+++.+.||.+.+.+++..+..    ++.+     ..+... ..+. 
T Consensus       163 ~v~---------~~---~~~~p~g~~-------~~~~~~~dg~~~~vd~~~~~~~----~~~v~~~~t~~i~vg-~~P~-  217 (368)
T 1mda_H          163 KSA---------SC---FHIHPGAAA-------THYLGSCPASLAASDLAAAPAA----AGIVGAQCTGAQNCS-SQAA-  217 (368)
T ss_dssp             ECS---------SC---CCCEEEETT-------EEECCCCTTSCEEEECCSSCCC----CEECCCCSCTTSCBC-SCCE-
T ss_pred             ECC---------Cc---eEEccCCCe-------EEEEEcCCCCEEEEECcccccc----CCeEEEEeeeeeeCC-CCcc-
Confidence            320         10   122232221       5666677888877776541000    0111     012221 2233 


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCC-ccCccCCeeeeEEEEEecCCCCEEEEEeC--------
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------  235 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------  235 (341)
                        . .+++..++..+. +.|.+.|.....  .+..+...... ......+.....+++  ++++++++++..        
T Consensus       218 --~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~--s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          218 --Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK--LKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             --E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE--ETTTTEEEEEEEECSSCTTS
T ss_pred             --c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE--cCCCCEEEEEeccccCcccc
Confidence              2 556666666666 899999986532  22222111000 000000111222677  788888887543        


Q ss_pred             -CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce-EEEEe-CCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          236 -DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       236 -d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                       ++.+.++|+.+.+. +..+.... ....++|+|+|+. +++.. .++.|.++|+.+++.+.++...  ..-..+++.+
T Consensus       292 ~~~~~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~  366 (368)
T 1mda_H          292 AAENTSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSVQN  366 (368)
T ss_dssp             CEEEEEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred             cCCCEEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence             23566999998764 66555443 5788999999974 55555 5899999999999999998764  4455666654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.84  E-value=7.8e-07  Score=81.12  Aligned_cols=208  Identities=13%  Similarity=0.078  Sum_probs=121.5

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCC--CCCce-eeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      .|++++.++.|.-+|..+|+.+.++..........  ....+ .....  .++        .++.++.++.+..+|....
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~v~v~~~dg~l~alD~~tG  137 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGD--------KVYVGTLDGRLIALDAKTG  137 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBT--------EEEEECTTSEEEEEETTTC
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECC--------EEEEEcCCCEEEEEECCCC
Confidence            57778889999999999999887776421110000  00000 01111  112        6777788888888876543


Q ss_pred             ccccccCCceEEEEEeecCCc--eEEEEecC--CCCEEEEeeC------CCeEEEEECCCCceeeecCCCCCCccCc---
Q 019405          144 KVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI---  210 (341)
Q Consensus       144 ~~~~~~~~~~v~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~~~~---  210 (341)
                      +          .+|.......  ...+...|  .+..++++..      ++.|..+|.++++.++.+..........   
T Consensus       138 ~----------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~  207 (668)
T 1kv9_A          138 K----------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH  207 (668)
T ss_dssp             C----------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             C----------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence            3          2344332110  00001111  1334555443      5899999999999998876421110000   


Q ss_pred             -------------------cCCeeeeEEEEEecCCCCEEEEEeCCC-------------------eEEEEEcCCCCceeE
Q 019405          211 -------------------FTPTWFTSAAFLSIDDHRKFVAGTNDH-------------------QVRLYDTSAQRRPVM  252 (341)
Q Consensus       211 -------------------~~~~~v~~~~~~~~~~~~~l~~~~~d~-------------------~i~iwd~~~~~~~~~  252 (341)
                                         ........+++  .++..+++.+..++                   .|..+|..+++. +-
T Consensus       208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~W  284 (668)
T 1kv9_A          208 PELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-AW  284 (668)
T ss_dssp             HHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-EE
T ss_pred             cccccccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-ee
Confidence                               00011124567  67778888887776                   399999999875 55


Q ss_pred             EEEe--cC-------CCeEEEEEcCCCc---eEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          253 SFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       253 ~~~~--~~-------~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      .++.  |.       .+.....+..+|+   .++.++.+|.++++|..+|+++...+
T Consensus       285 ~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          285 HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence            5543  22       2222223334664   68899999999999999999885443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.81  E-value=2.6e-05  Score=62.55  Aligned_cols=251  Identities=10%  Similarity=-0.021  Sum_probs=135.7

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE  102 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  102 (341)
                      .+.|..+++.............+.........+++.++..   .++++-..++.|.++++..+.....+..        .
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~---~ly~~d~~~~~I~~~~~~g~~~~~~~~~--------~   77 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK---VVYWTDISEPSIGRASLHGGEPTTIIRQ--------D   77 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT---EEEEEETTTTEEEEEESSSCCCEEEECT--------T
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC---EEEEEECCCCEEEEEecCCCCcEEEEEC--------C
Confidence            4567777766541110000001111122344566665433   2445555678999999865443222211        1


Q ss_pred             CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC
Q 019405          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (341)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~  182 (341)
                      ......+++-+..+.       .+++-...+.+.+++++...         ....-.........++++|++..|+.+..
T Consensus        78 ~~~p~~ia~d~~~~~-------lyv~d~~~~~I~~~~~~g~~---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           78 LGSPEGIALDHLGRT-------IFWTDSQLDRIEVAKMDGTQ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             CCCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             CCCccEEEEEecCCe-------EEEEECCCCEEEEEEcCCCC---------EEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence            133455555433331       45555556777777653211         11111111245678999997666555443


Q ss_pred             ---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecC
Q 019405          183 ---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (341)
Q Consensus       183 ---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~  258 (341)
                         .+.|..+++.... ...+....        ......+++  ++++..|. +-...+.|.++|...... ...+. ..
T Consensus       142 ~~~~~~I~~~~~dg~~-~~~~~~~~--------~~~P~gia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~  208 (267)
T 1npe_A          142 NRDNPKIETSHMDGTN-RRILAQDN--------LGLPNGLTF--DAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE-GL  208 (267)
T ss_dssp             CSSSCEEEEEETTSCC-CEEEECTT--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE-CC
T ss_pred             CCCCcEEEEEecCCCC-cEEEEECC--------CCCCcEEEE--cCCCCEEEEEECCCCEEEEEecCCCce-EEEec-CC
Confidence               3688888875322 22221110        133678889  77765554 555668999999875332 22223 22


Q ss_pred             CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       259 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      .....++.. .+.++++....+.|..+|..+++.+..+..........+++.|++.
T Consensus       209 ~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          209 QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            334567664 3444444445689999999999998888643122467888888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=1.5e-05  Score=65.85  Aligned_cols=236  Identities=10%  Similarity=-0.032  Sum_probs=134.9

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchheeeccCCCCC------------CCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (341)
                      +.++.++..++.|..|+..+++. ..+........            ........++.+-+..+        .|+.+...
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--------~l~v~d~~  100 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--------QLYIVDCY  100 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--------EEEEEETT
T ss_pred             CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCC--------cEEEEECC
Confidence            44688888899999999875543 22221000000            00012344555432233        55555444


Q ss_pred             ceeEEEEeeecccccccCCceEEEEEee----cCCceEEEEecC-CCCEEEEeeC-----------------CCeEEEEE
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDI-SEKFSLFGGK-----------------GVEVNVWD  190 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~v~i~d  190 (341)
                      +.+..++...         +.++.+...    .......+++++ +|++.++-..                 ++.|..||
T Consensus       101 ~~i~~~d~~~---------g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A          101 YHLSVVGSEG---------GHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             TEEEEECTTC---------EECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             CCEEEEeCCC---------CEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            5455555321         122222111    112467789999 8887665432                 36788899


Q ss_pred             CCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCc-eeEEEEecCCCeEEEEEcC
Q 019405          191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEP  268 (341)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~  268 (341)
                      ..+++........          .....+++  +++++.|+.+ ..++.|.+|++..... ....+..... ...+++.+
T Consensus       172 ~~~~~~~~~~~~~----------~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~  238 (322)
T 2fp8_A          172 PSTKETTLLLKEL----------HVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA  238 (322)
T ss_dssp             TTTTEEEEEEEEE----------SCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT
T ss_pred             CCCCEEEEeccCC----------ccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC
Confidence            8766543221110          12456788  8898866555 5668999999875221 1222222223 67899999


Q ss_pred             CCceEEEEeC----------CCCEEEEECCCCeEEeEEeccc---cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          269 DSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       269 ~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      +|.+.++...          .+.|..+|. .++.+..+....   ...+..+++ .++.++++...++.|..+++...
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            9986666544          467888987 477777776431   134667776 46666667667889999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=8.8e-06  Score=63.93  Aligned_cols=170  Identities=14%  Similarity=0.034  Sum_probs=112.9

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .+++.+.+|.+.++|++..+.        ++.. +.....-..+++.. +++.+..-.++.+.+||..+.+.+.++....
T Consensus        67 Ly~stG~~g~v~~iD~~Tgkv--------~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~  136 (268)
T 3nok_A           67 FFESTGHQGTLRQLSLESAQP--------VWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG  136 (268)
T ss_dssp             EEEEETTTTEEEECCSSCSSC--------SEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEcCCCCEEEEEECCCCcE--------EeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence            777888888888888865542        2222 22211122345543 2333444568899999999999998887642


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cC---CCeEEEEEcCCCceEEEEeCC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE---TPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .          -..+++    ++..|+.+..++.|.++|..+.+. +..+.-  +.   ..++.+.|. +|+..+....+
T Consensus       137 e----------GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          137 E----------GWGLCY----WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             C----------CCCEEE----ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             c----------eeEEec----CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence            1          133444    577777777799999999998764 555443  22   234667776 77655555578


Q ss_pred             CCEEEEECCCCeEEeEEecc------------ccCceeEEEecCCCCEEEEEe
Q 019405          280 GDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      +.|.+.|.++++.+..+...            ..+..+.|+++|+++.|+..+
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            89999999999998887642            123678899999876555444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=5.1e-06  Score=74.26  Aligned_cols=143  Identities=13%  Similarity=0.036  Sum_probs=87.7

Q ss_pred             CCCC---EEEEeeCCCeEEEEECCCCceeeecCCCCCCc----cCcc---------------CCee-----------eeE
Q 019405          172 ISEK---FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS----LGIF---------------TPTW-----------FTS  218 (341)
Q Consensus       172 ~~~~---~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~----~~~~---------------~~~~-----------v~~  218 (341)
                      .+++   .++.++.+|.++++|.++++.++..+......    ....               ....           -..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            3563   56778899999999999999887764322000    0000               0000           023


Q ss_pred             EEEEecCCCCEEEEEe-------------------------------------CCCeEEEEEcCCCCceeEEEEecCCCe
Q 019405          219 AAFLSIDDHRKFVAGT-------------------------------------NDHQVRLYDTSAQRRPVMSFDFRETPI  261 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v  261 (341)
                      ++|  +|+..++++..                                     .++.|..||..+++. +-.+... .++
T Consensus       391 ~a~--dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-~W~~~~~-~~~  466 (571)
T 2ad6_A          391 DSY--DPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-KWTKWEK-FAA  466 (571)
T ss_dssp             CEE--ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-EEEEEES-SCC
T ss_pred             ceE--CCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-EEEecCC-CCc
Confidence            566  66666666553                                     347899999998775 4444432 233


Q ss_pred             EEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      ....+...+..+++++.|+.|+.+|.++++.+.+++......-.-+.+..+|++++.
T Consensus       467 ~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          467 WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            332233345577889999999999999999999887541111122445567764443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.72  E-value=2.3e-05  Score=61.50  Aligned_cols=171  Identities=12%  Similarity=0.035  Sum_probs=109.9

Q ss_pred             eeEEEcccc--eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecC
Q 019405          125 TLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       125 ~l~~~~~~g--~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~  201 (341)
                      .+.+.+.+|  .+.++|++..+        .+....+.  .......+.++++.|... -.++.+.+||..+.+.+.++.
T Consensus        55 LyestG~~g~S~v~~vD~~Tgk--------v~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           55 FYESTGLNGRSSIRKVDIESGK--------TLQQIELG--KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEEEEETTEEEEEEECTTTCC--------EEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCCceEEEEECCCCc--------EEEEEecC--CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            566666655  67777765433        33333332  233222222234455444 457899999999999998887


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEE
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g  276 (341)
                      ....        +  ..+++    ++..|+.+..++.|.++|..+.+. +..+.-.  .   ..++.+.|. +|+..+..
T Consensus       125 ~~~e--------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          125 YDGE--------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             CSSC--------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CCCC--------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            6421        1  23334    667777766688899999998764 5554431  2   234557776 67666555


Q ss_pred             eCCCCEEEEECCCCeEEeEEecc-----------ccCceeEEEecCCCCEEEEEeC
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGK-----------CSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      ..++.|.+.|.++++.+..+...           .....+.|+|+|+++.|...+.
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            57889999999999998887642           0135688999998887666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=5.3e-05  Score=58.94  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=109.2

Q ss_pred             eeEEEcccc--eeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g--~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      .+.+.+..|  .+..+|+...+        .++...+.....-..+++.. +++.+..-.++.+.+||..+.+.+.+++.
T Consensus        33 LyestG~~g~S~v~~vD~~tgk--------v~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           33 LYESTGETGRSSVRKVDLETGR--------ILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             EEEEECCTTSCEEEEEETTTCC--------EEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCCceEEEEECCCCC--------EEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            555555554  67777765433        33333332211112334332 33334445688999999999999988876


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec--C---CCeEEEEEcCCCceEEEEe
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E---TPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g~  277 (341)
                      ...        +  ..++.    ++..|+.+..++.|.++|..+.+. +..+.-.  .   ..++.+.+. +|+..+...
T Consensus       104 ~~~--------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X          104 PGE--------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             SSC--------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             CCC--------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            421        1  23444    566677777789999999998764 5555432  1   245566665 666665555


Q ss_pred             CCCCEEEEECCCCeEEeEEecc------------ccCceeEEEecCCCCEEEEEeC
Q 019405          278 GSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      .+..|.+.|.++++.+..+...            ..+..+.|+++|+++.|...+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            7889999999999998887632            1235688999998876655553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=7e-06  Score=73.49  Aligned_cols=78  Identities=14%  Similarity=0.001  Sum_probs=50.0

Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  315 (341)
                      +|.|..||+.+++. +-.... ..+...-.....+.+++.++.|+.++.||.++|+.+.+++........-+.+..+|++
T Consensus       452 ~G~l~A~D~~tG~~-~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          452 LGQIKAYNAITGDY-KWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCeEEEEECCCCCE-EeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            47899999998774 444432 2222211122245677889999999999999999999887541112222555567763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.60  E-value=1.7e-05  Score=71.06  Aligned_cols=77  Identities=22%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE--EEecCCC
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTL  313 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~~~~~  313 (341)
                      +|.|..||+.+++. +-..... .++..-.....+.+++.|+.|+.++.||.++|+.+.+++.. . .+.+  +.+..+|
T Consensus       465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~-~-g~~a~P~~y~~~G  540 (582)
T 1flg_A          465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG-S-GIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S-CCCSCCEEEEETT
T ss_pred             cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC-C-CcccCceEEEECC
Confidence            57899999998875 4444433 22222112224557888999999999999999999998864 2 3322  6676788


Q ss_pred             CEE
Q 019405          314 PII  316 (341)
Q Consensus       314 ~~l  316 (341)
                      ++.
T Consensus       541 ~qY  543 (582)
T 1flg_A          541 EQY  543 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.58  E-value=0.00049  Score=64.32  Aligned_cols=250  Identities=10%  Similarity=0.037  Sum_probs=145.7

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      .+.++....++.     |..|+.+ -|.+|+..+++... +........+-....+.++. .+..+        .+..++
T Consensus       264 ~i~~i~~d~~g~-----lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~-~D~~g--------~lWigt  327 (795)
T 4a2l_A          264 YIRSLAMDSQNR-----LWIGTFN-DLNIYHEGTDSFAS-YSSNPVENGSLSQRSVRSIF-MDSQG--------GMWLGT  327 (795)
T ss_dssp             BEEEEEECTTSC-----EEEEESS-CEEEEETTTTEEEE-ECCCTTSTTSCSSSCEEEEE-ECTTS--------CEEEEE
T ss_pred             eEEEEEEcCCCC-----EEEEeCC-hhheEcCCCCeEEE-EecCCCCCCCCCCCcEEEEE-EeCCc--------CEEEEE
Confidence            355454443333     6666655 58889987654322 22110011111223444443 23333        778888


Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEee------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      .++-+..++.....         ...+...      ....|.++..++++++.+ |+.++-|..||..+++...-.....
T Consensus       328 ~~~Gl~~~~~~~~~---------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~  397 (795)
T 4a2l_A          328 YFGGLNYYHPIRNR---------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQED  397 (795)
T ss_dssp             SSSCEEEECGGGGS---------SEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC--
T ss_pred             CCCCeEEeCCCccc---------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCC
Confidence            77777777643221         1222110      234688998888877544 6777679999987765433221110


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-----cCCCeEEEEEcCCCceEEEEeCC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      .....+ ....|.++..  .+++.+|..|+.++-|..||..+++  ...+..     ....|.++...++|.+.+. +. 
T Consensus       398 ~~~~~l-~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-  470 (795)
T 4a2l_A          398 ESARGI-GSNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-  470 (795)
T ss_dssp             ----CC-SCSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-
T ss_pred             CcccCC-CCccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-
Confidence            000000 1245888887  6777757778887889999988754  333331     2457899998888875554 44 


Q ss_pred             CCEEEEECCCCeEEeEEec-----cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          280 GDLASVDIRTGKLLGCFIG-----KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +-|.+||..+++.......     .....|.++...++|.+.+...  +-|..||..+++.
T Consensus       471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred             CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence            4599999988765432211     1135789999999998766554  4588888876654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.53  E-value=7.1e-05  Score=61.79  Aligned_cols=163  Identities=10%  Similarity=-0.005  Sum_probs=97.5

Q ss_pred             ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC-CCCEEEEEeC------
Q 019405          164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN------  235 (341)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~------  235 (341)
                      ....+++++ +++ |+.+...+.|..+|..+++............     ......+++  .+ ++++.++-..      
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~-----~~~p~~i~~--d~~~G~l~v~d~~~~~~~~  152 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVP-----FKWLYAVTV--DQRTGIVYFTDVSTLYDDR  152 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEE-----CSCEEEEEE--CTTTCCEEEEESCSSCCTT
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCc-----ccccceEEE--ecCCCEEEEECCccccccc
Confidence            467889997 555 4445445568888877553211111100000     123667888  88 8876666432      


Q ss_pred             -----------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCe--EEeEEecccc
Q 019405          236 -----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCS  301 (341)
Q Consensus       236 -----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~--~~~~~~~~~~  301 (341)
                                 ++.|..||..+++  +..+...-.....++++|+++.|+++ ...+.|..|++....  ....+... .
T Consensus       153 ~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~  229 (322)
T 2fp8_A          153 GVQQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-P  229 (322)
T ss_dssp             CHHHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-S
T ss_pred             ccceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-C
Confidence                       3678888877644  22222222345679999999866655 456889999987421  11112112 2


Q ss_pred             CceeEEEecCCCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~  339 (341)
                      + ...+++.++|.++++...          .+.|..+|.. |+.+..+
T Consensus       230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~  275 (322)
T 2fp8_A          230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI  275 (322)
T ss_dssp             S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred             C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence            3 678999999987666544          4567888764 6665544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.53  E-value=0.00065  Score=63.46  Aligned_cols=243  Identities=10%  Similarity=0.058  Sum_probs=144.1

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      .|.++....++.     |-.|+.++-|..|+..+++.. .+... .....-....+.++.. +..+        .+..|+
T Consensus       311 ~i~~i~~D~~g~-----lWigt~~~Gl~~~~~~~~~~~-~~~~~-~~~~~l~~~~V~~i~~-d~~g--------~lWiGt  374 (795)
T 4a2l_A          311 SVRSIFMDSQGG-----MWLGTYFGGLNYYHPIRNRFK-NIRNI-PYKNSLSDNVVSCIVE-DKDK--------NLWIGT  374 (795)
T ss_dssp             CEEEEEECTTSC-----EEEEESSSCEEEECGGGGSSE-EECCC-TTSSSCSCSSEEEEEE-CTTS--------CEEEEE
T ss_pred             cEEEEEEeCCcC-----EEEEECCCCeEEeCCCcccce-EEcCC-CCCCCCCCCeeEEEEE-CCCC--------CEEEEE
Confidence            344444444443     777888888999987654322 22211 0001112234544432 2233        677888


Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEee--------cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCC
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  202 (341)
                      .++-+..++....         .+..+...        ....|.++..+++++.|..|+.++-|..||..+++...-...
T Consensus       375 ~~~Gl~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          375 NDGGLNLYNPITQ---------RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             SSSCEEEECTTTC---------CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             CCCCeEEEcCCCC---------cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            8777777764321         22222211        135688998888888566677777899999987654332211


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~  275 (341)
                      .. .    .....|.++..  .+++.+.+ |+. +.+.+||..+++  ...+..       ....|.++...++|.+.+.
T Consensus       446 ~~-~----l~~~~v~~i~~--d~~g~lwi-gt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  514 (795)
T 4a2l_A          446 NS-Q----LVNENVYAILP--DGEGNLWL-GTL-SALVRFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG  514 (795)
T ss_dssp             TS-C----CSCSCEEEEEE--CSSSCEEE-EES-SCEEEEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred             CC-C----cCCCeeEEEEE--CCCCCEEE-Eec-CceeEEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEEE
Confidence            10 0    11245888887  66676544 444 458889987643  222221       2356899999988876554


Q ss_pred             EeCCCCEEEEECCCCeEEeEEe------ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          276 GNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      . . +-|..||..+++.  .+.      +.....|.++...++|.+.++.. . -|..||..+++.
T Consensus       515 t-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~  574 (795)
T 4a2l_A          515 G-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQI  574 (795)
T ss_dssp             E-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEE
T ss_pred             e-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcE
Confidence            4 4 5689999887765  232      11245799999999998666543 3 588888876543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.52  E-value=5.1e-05  Score=69.19  Aligned_cols=236  Identities=13%  Similarity=0.029  Sum_probs=122.7

Q ss_pred             CceEEEEccCC-----------eEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc-cc
Q 019405           65 DPLLAVARKNG-----------LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TK  132 (341)
Q Consensus        65 ~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~  132 (341)
                      +++++.|+.+.           .+.+||+.+++.........     +......+.++.....        .++.|+ .+
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-----~~~~~~~~~~~~~~g~--------lyv~GG~~~  264 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-----KHDMFCPGISMDGNGQ--------IVVTGGNDA  264 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-----SCCCSSCEEEECTTSC--------EEEECSSST
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-----CCCCccccccCCCCCC--------EEEeCCCCC
Confidence            44777776542           58899998876543222110     0111111122222222        566665 34


Q ss_pred             ceeEEEEeeecccccccCCceEEEEEe----ecCCceEEEEecCCCCEEEEee-CC-----CeEEEEECCCCceeeecCC
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKSWNV----CASGTIAFSKVDISEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~d-----~~v~i~d~~~~~~~~~~~~  202 (341)
                      ..+.+||....            .|..    .....-.++...+++++++.|+ .+     ..+.+||..+.+-.. +..
T Consensus       265 ~~v~~yd~~t~------------~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~  331 (656)
T 1k3i_A          265 KKTSLYDSSSD------------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPN  331 (656)
T ss_dssp             TCEEEEEGGGT------------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETT
T ss_pred             CceEEecCcCC------------ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCC
Confidence            56777776432            1221    1111223455557899999988 34     469999998765322 111


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecC---------CCeEEE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRE---------TPIKAV  264 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~  264 (341)
                      .....+...  . -. ..+  ..++..++.++.+         ..+..||..+... ......+.         ..-.++
T Consensus       332 ~~~~p~~~~--~-~~-~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          332 AKVNPMLTA--D-KQ-GLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             SCSGGGCCC--C-TT-GGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEE
T ss_pred             ccccccccc--c-cc-cee--ecCCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceE
Confidence            100000000  0 00 011  2344444555443         4577888876542 22222111         122445


Q ss_pred             EEcC-CCceEEEEeCCC-----------CEEEEECCCCeEEeEE--eccccCc-eeEEEecCCCCEEEEEeCC-------
Q 019405          265 AEEP-DSFNIYIGNGSG-----------DLASVDIRTGKLLGCF--IGKCSGS-IRSIARHPTLPIIASCGLD-------  322 (341)
Q Consensus       265 ~~~~-~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~-i~~~~~~~~~~~l~s~~~d-------  322 (341)
                      .|.. ++++++.|+.++           .|.+||..+.+.....  ..+ ... -.+++..|++++++.|+.+       
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            5543 677888887542           5888888876654332  222 222 2345677899999999865       


Q ss_pred             ----CcEEEEEcCCCc
Q 019405          323 ----SYLRFWDIKTRQ  334 (341)
Q Consensus       323 ----g~v~iwd~~~~~  334 (341)
                          ..+.+||..+.+
T Consensus       484 ~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CSBCCCCEEEEGGGTE
T ss_pred             CCcccceEEEcCCCCc
Confidence                468999987755

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.52  E-value=0.00033  Score=59.35  Aligned_cols=233  Identities=8%  Similarity=-0.052  Sum_probs=130.9

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++........+..         ......+.+-...+.       .+++-...+.|..++++..   
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~~-------ly~~D~~~~~I~r~~~~g~---  148 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRREL-------VFWSDVTLDRILRANLNGS---  148 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSC---
T ss_pred             eeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCCe-------EEEEeCCCCcEEEEecCCC---
Confidence            455554 46788888876544333322         244566666544431       4445455666666665321   


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                            .+..+-.........+++++.+.. .++-...+.|.+.++........+...         ......+++  .|
T Consensus       149 ------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~P~giav--dp  211 (386)
T 3v65_B          149 ------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HP  211 (386)
T ss_dssp             ------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS---------CSCEEEEEE--ET
T ss_pred             ------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC---------CCCCcEEEE--Ec
Confidence                  122221111223456778865444 445555678888887643322222211         123677888  66


Q ss_pred             CCCEEEEE-eCC-CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405          226 DHRKFVAG-TND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       226 ~~~~l~~~-~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      .+..|+.. ... +.|..+++..... .......-.....++++|++..|+.+. ..+.|..+|+........+... ..
T Consensus       212 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~  289 (386)
T 3v65_B          212 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP  289 (386)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CS
T ss_pred             CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CC
Confidence            55554444 344 7888888875332 222222334568899998766666554 4577999998643332223222 34


Q ss_pred             ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....|++ ..+.++++-...+.|..+|..+|+.+..+
T Consensus       290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            5677888 34556666667788999987777765554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.00023  Score=56.14  Aligned_cols=205  Identities=10%  Similarity=0.064  Sum_probs=120.7

Q ss_pred             CceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC
Q 019405          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (341)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  183 (341)
                      +.+..+.+.+..+.       .+++...++.+...+.. .        ..++.+..........+++.+++.++++.-.+
T Consensus        27 ~~lSGla~~~~~~~-------L~aV~d~~~~I~~ld~~-g--------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           27 NNISSLTWSAQSNT-------LFSTINKPAAIVEMTTN-G--------DLIRTIPLDFVKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             SCEEEEEEETTTTE-------EEEEEETTEEEEEEETT-C--------CEEEEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred             cCcceeEEeCCCCE-------EEEEECCCCeEEEEeCC-C--------CEEEEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence            45777777654441       44445556666666543 1        13444444333567788888888877766567


Q ss_pred             CeEEEEECCCCcee---eecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC--CCceeEEEEe--
Q 019405          184 VEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDF--  256 (341)
Q Consensus       184 ~~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~--  256 (341)
                      +.+.++++.....+   ........   ..........++|  +|.++.|.++.......+|.+..  ....+..+..  
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~---~~~~N~g~EGLA~--d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQ---ESPTNCGFEGLAY--SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCS---SCCCSSCCEEEEE--ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccc---cccccCCcceEEE--eCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence            88999987654321   22211100   0112244789999  78887777777665556665541  1111222211  


Q ss_pred             -----cCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECCCCeEEeEEeccc---c-----CceeEEEecCCCCEEEEEeCC
Q 019405          257 -----RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKC---S-----GSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       257 -----~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~i~~~~~~~~~~~l~s~~~d  322 (341)
                           +...+.+++++|.. ++++....+..|.++|.. ++.+..+.-..   .     ..-..|+|.++|+.+++ ++-
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~  243 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP  243 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence                 22356889999965 555666667889999976 55555544220   0     25678999999985555 676


Q ss_pred             CcEEEEEcC
Q 019405          323 SYLRFWDIK  331 (341)
Q Consensus       323 g~v~iwd~~  331 (341)
                      +.++.|.-.
T Consensus       244 n~~y~f~~~  252 (255)
T 3qqz_A          244 NRFYRFTPQ  252 (255)
T ss_dssp             TEEEEEEC-
T ss_pred             ceEEEEEec
Confidence            766666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.46  E-value=0.00043  Score=57.78  Aligned_cols=232  Identities=8%  Similarity=-0.032  Sum_probs=129.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++........+..         ......+.+-...+.       .+++-...+.|..++++...  
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~---------~~~~~~l~~d~~~~~-------ly~~D~~~~~I~r~~~~g~~--  106 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRREL-------VFWSDVTLDRILRANLNGSN--  106 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS--
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeecC---------CCceEEEEEeccccE-------EEEEeccCCceEEEecCCCC--
Confidence            455554 45688888865443322222         134556666544431       44444556666666653221  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                             +..+-.........+++++.+. +.++-...+.|.+.++........+....         .....+++  .|
T Consensus       107 -------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l---------~~P~~iav--dp  168 (349)
T 3v64_C          107 -------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL---------EKPRAIAL--HP  168 (349)
T ss_dssp             -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC---------SCEEEEEE--ET
T ss_pred             -------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence                   1111111123346788887544 44555566789999986443222222111         23577888  66


Q ss_pred             CCCE-EEEEeCC-CeEEEEEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecccc
Q 019405          226 DHRK-FVAGTND-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCS  301 (341)
Q Consensus       226 ~~~~-l~~~~~d-~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~  301 (341)
                      .+.. +++-..+ +.|..+++.....  ..+ ...-.....++++|++..|+.+. ..+.|..+|+........+... .
T Consensus       169 ~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~  245 (349)
T 3v64_C          169 MEGTIYWTDWGNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-L  245 (349)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C
T ss_pred             CcCeEEEeccCCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-C
Confidence            4444 4444444 7888888875332  222 22234568899998776666554 4577999998643322223222 3


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .....+++ .++.++++-...+.|..++..+|+.+..+
T Consensus       246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            45567777 34556666666788888887677665544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.33  E-value=0.00079  Score=55.01  Aligned_cols=230  Identities=10%  Similarity=-0.020  Sum_probs=117.4

Q ss_pred             eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc
Q 019405           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  132 (341)
                      ..+++.+++.    ++++-..++.|..||... +....+..         .....++.+-+...        .+++....
T Consensus        35 egia~~~~g~----lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~dG~--------l~vad~~~   92 (306)
T 2p4o_A           35 ENLASAPDGT----IFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTSNGD--------LVATGWNA   92 (306)
T ss_dssp             EEEEECTTSC----EEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECTTSC--------EEEEEECT
T ss_pred             ceEEECCCCC----EEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcCCCc--------EEEEeccC
Confidence            3455555444    666666789999999864 33322221         13344454432222        33333222


Q ss_pred             ceeEEEEeeecccccccCCceEEE-EEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCce-eeecCCC-C--CCc
Q 019405          133 GKASMRSIEVTKVSAESSCSTVKS-WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPP-P--KNS  207 (341)
Q Consensus       133 g~~~i~~~~~~~~~~~~~~~~v~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~--~~~  207 (341)
                      +...++.+..       .++.+.. ...........++..+++..+++-..++.|..+|..+++. +...... .  ...
T Consensus        93 ~~~~v~~~d~-------~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~  165 (306)
T 2p4o_A           93 DSIPVVSLVK-------SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  165 (306)
T ss_dssp             TSCEEEEEEC-------TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             CcceEEEEcC-------CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence            2223333221       1222222 2221122233444445554455554678999999876431 2110000 0  000


Q ss_pred             cCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCC-CCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSA-QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                      -..   .....+    +++++.| ++-...+.|..|++.. ++. ....+... .....++++++|+++++....+.|.+
T Consensus       166 ~~~---~~pngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~  237 (306)
T 2p4o_A          166 SVF---PAANGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVR  237 (306)
T ss_dssp             CCS---CSEEEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             CCC---CcCCCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEE
Confidence            011   113333    3456544 4555678999999874 221 12222211 34567899999987777667889999


Q ss_pred             EECCCCeEEe--EEeccccCceeEEEec---CCCCEEEEEeC
Q 019405          285 VDIRTGKLLG--CFIGKCSGSIRSIARH---PTLPIIASCGL  321 (341)
Q Consensus       285 wd~~~~~~~~--~~~~~~~~~i~~~~~~---~~~~~l~s~~~  321 (341)
                      +|.. ++...  .+... ....++++|.   |++..|..++.
T Consensus       238 ~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          238 IAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             ECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECC
Confidence            9975 65532  23322 3568899998   88776655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.00089  Score=55.00  Aligned_cols=236  Identities=9%  Similarity=-0.077  Sum_probs=133.4

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++...+....+..         ......+.+-...+.       .+++-...+.|..++++.....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~~-------ly~~D~~~~~I~~~~~~g~~~~   65 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHGV   65 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC---------CCceEEEEEEeCCCE-------EEEEECCCCcEEEEECCCCCCC
Confidence            455555 35688899987655443332         244566666443331       5555556677777776531000


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCC-EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                          .....+... .-.....+++++.+. +.++-...+.|.++++........+....         .....+++  .|
T Consensus        66 ----~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---------~~P~~iav--dp  129 (316)
T 1ijq_A           66 ----SSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP  129 (316)
T ss_dssp             ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred             ----cccEEEEeC-CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC---------CCcceEEe--CC
Confidence                001112211 113456788886544 44455667899999987543322222111         23677888  66


Q ss_pred             CCCEEEEEeC-C-CeEEEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEE-ec-c
Q 019405          226 DHRKFVAGTN-D-HQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF-IG-K  299 (341)
Q Consensus       226 ~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~-~~-~  299 (341)
                      .+..|+.+.. . +.|..+++....  ...+. ..-.....++++|++..|+.+. ..+.|..+|+.... ...+ .. .
T Consensus       130 ~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~  206 (316)
T 1ijq_A          130 VHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEK  206 (316)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTT
T ss_pred             CCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCC
Confidence            5555544443 3 688888876432  33332 2234567899998776666555 45789999986432 2222 21 1


Q ss_pred             ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       300 ~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .......+++. .+.++++-...+.|..++..+|+.+..+
T Consensus       207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            12345678875 4556666667788999998877765544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.28  E-value=0.001  Score=54.60  Aligned_cols=236  Identities=8%  Similarity=-0.064  Sum_probs=129.1

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++........+..       ........+.|....+.       .+++-...+.|..++++...  
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~ld~d~~~~~-------lyw~D~~~~~I~r~~~~g~~--   68 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVV-------GGLEDAAAVDFVFSHGL-------IYWSDVSEEAIKRTEFNKTE--   68 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEE-------EEEEEEEEEEEEGGGTE-------EEEEETTTTEEEEEETTSSS--
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEe-------cCCCccEEEEEEeCCCE-------EEEEECCCCcEEEEEccCCC--
Confidence            455555 57899999876531111111       00123445555443331       44454555666666543221  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                          . ...+... .-.....+++++.+ ++.++-...+.|.++++........+....         .....+++  .|
T Consensus        69 ----~-~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~---------~~P~giav--dp  131 (318)
T 3sov_A           69 ----S-VQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--DP  131 (318)
T ss_dssp             ----C-CCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SSEEEEEE--EG
T ss_pred             ----c-eEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC---------CCccEEEE--eC
Confidence                0 0111111 11345578888644 444555566789999986433222221111         23677888  66


Q ss_pred             CCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405          226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       226 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      .+..|+.+.  ..+.|...++..... .......-..-..++++|++..|+.+. ..+.|..+|+............ ..
T Consensus       132 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~  209 (318)
T 3sov_A          132 SSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LP  209 (318)
T ss_dssp             GGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CS
T ss_pred             CCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CC
Confidence            555555544  357888888775332 222222233567899999776666554 4678999998643222222222 34


Q ss_pred             ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....+++. .+.++.+-...+.|..++..+|+.+..+
T Consensus       210 ~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          210 HPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            55677775 3345556656788999999888765544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.27  E-value=6.1e-05  Score=69.78  Aligned_cols=156  Identities=13%  Similarity=0.072  Sum_probs=96.8

Q ss_pred             ceEEEEec-CCCCEEEEeeC-C----CeEEEEECCCC-ceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC
Q 019405          164 TIAFSKVD-ISEKFSLFGGK-G----VEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (341)
Q Consensus       164 ~i~~~~~~-~~~~~l~~~~~-d----~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  236 (341)
                      .+...+|+ |||++|+.+.. +    .+|+++|+.++ +.+.   ...        +.....++|  +|+++.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~~--------~~~~~~~~W--spDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DKV--------SGTNGEIVW--GPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CCE--------EEECSCCEE--CSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---ccc--------cCceeeEEE--ecCCCEEEEEEEC
Confidence            46778999 99998885433 2    25999999988 5321   100        122346789  8999888777665


Q ss_pred             -----CeEEEEEcCCCCce-eEEEEe-cCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCC--eE-EeEEeccccCc
Q 019405          237 -----HQVRLYDTSAQRRP-VMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS  303 (341)
Q Consensus       237 -----~~i~iwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~--~~-~~~~~~~~~~~  303 (341)
                           ..|+++++.++... ...+.. .......+.|+|||++|+....   ...|+++|+.++  +. +..+.......
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence                 36888888765421 233332 2234667899999998876553   345888999875  22 12332222455


Q ss_pred             eeEEEecCCCCEEEEEeCC----CcEEEEEcCC
Q 019405          304 IRSIARHPTLPIIASCGLD----SYLRFWDIKT  332 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~d----g~v~iwd~~~  332 (341)
                      ..++.|+.++.+++....+    ..|..+|+.+
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            6666665545455555444    2566677764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.00017  Score=62.01  Aligned_cols=155  Identities=10%  Similarity=0.064  Sum_probs=97.7

Q ss_pred             ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC----
Q 019405          164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH----  237 (341)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~----  237 (341)
                      ....++++| ++..|+.+...+.|+.+|+..++....... .         .....+++  ++++++|+++.. ++    
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~---------~~P~~ia~--d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L---------SKVRTICW--THEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C---------SCEEEEEE--CTTSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C---------CCcceEEE--eCCCCEEEEEeCCCCcccc
Confidence            346788888 455666655557899999987654433331 1         33678899  889986665544 22    


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCE-
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-  315 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-  315 (341)
                      .+..++..........+.. ......++++| ++.++++-...+.|+.++...+.............-..++|+|++++ 
T Consensus       206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            3444444332211223332 23457789999 66666666677899999998776533232221245678999999994 


Q ss_pred             EEEEeCCCcEEEEEcC
Q 019405          316 IASCGLDSYLRFWDIK  331 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~  331 (341)
                      +++-...+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            4555567789998765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.19  E-value=0.0017  Score=53.31  Aligned_cols=200  Identities=13%  Similarity=0.151  Sum_probs=118.9

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccc--ceeEEEcc--cceeEEEEee
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS--RTLLTCTT--KGKASMRSIE  141 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~--~g~~~i~~~~  141 (341)
                      .+++.....+-+.+||+ +|+.+..+..          +.+..+..-+.-.-  +...  -.+++.-.  ++++.+++++
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l--~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPL--NGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEE--TTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEeccccc--CCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            35666667789999999 8888887754          44554444332100  0000  02233333  5788999874


Q ss_pred             ecccccccCCceEEEEE-----eecC-CceEEEEe--cCC-CC-EEEEeeCCCeEEEEECC-------CCceeeecCCCC
Q 019405          142 VTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKPPP  204 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~-----~~~~-~~i~~~~~--~~~-~~-~l~~~~~d~~v~i~d~~-------~~~~~~~~~~~~  204 (341)
                      -..       +.+....     +... ..+..+++  ++. +. ++++...+|.+..|++.       +.+.++++... 
T Consensus       108 p~~-------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-  179 (355)
T 3amr_A          108 GKN-------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-  179 (355)
T ss_dssp             TTT-------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-
T ss_pred             CCC-------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-
Confidence            211       1222220     0111 34555666  664 43 67788888999999883       23555666553 


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEE-ec-CCCeEEEEE--cCCCc-eEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFD-FR-ETPIKAVAE--EPDSF-NIYI  275 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~  275 (341)
                               ..+..+..  .+....|+.+-++..|..++.+...    ..+..+. ++ ...+..|++  .++++ +|++
T Consensus       180 ---------sq~Egcvv--Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv  248 (355)
T 3amr_A          180 ---------SQTEGMAA--DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA  248 (355)
T ss_dssp             ---------SCEEEEEE--ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred             ---------CCcceEEE--cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence                     23667777  7778899999998777777754211    1232221 11 235777877  45555 6666


Q ss_pred             Ee-CCCCEEEEECC-CCeEEeEEe
Q 019405          276 GN-GSGDLASVDIR-TGKLLGCFI  297 (341)
Q Consensus       276 g~-~dg~i~iwd~~-~~~~~~~~~  297 (341)
                      ++ .++...+||.+ +.+.+..|.
T Consensus       249 SsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          249 SSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EcCCCCEEEEEECCCCCcEEEEEE
Confidence            66 56789999997 677777775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.17  E-value=0.0024  Score=54.35  Aligned_cols=238  Identities=8%  Similarity=-0.092  Sum_probs=135.1

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++........+..         ...+..+.+-...+.       .+++-...+.|..++++.... 
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~~-------lywsD~~~~~I~~~~~~g~~~-  146 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHG-  146 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc---------cCcceEEeeeeccCc-------eEEEecCCCeEEEEEcccCCC-
Confidence            455554 57899999876544333322         255666766544441       445545567777666543110 


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                         ......+.. ........+++++. +++.++-...+.|.+.+++.......+....         .....+++  .|
T Consensus       147 ---~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~---------~~P~~iav--dp  211 (400)
T 3p5b_L          147 ---VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP  211 (400)
T ss_dssp             ----CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS---------CCEEEEEE--ET
T ss_pred             ---CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC---------CCcceEEE--ec
Confidence               000112221 12245678888874 4455555567889999987544333222111         23678888  66


Q ss_pred             CCCEEEEEe-C-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecc-cc
Q 019405          226 DHRKFVAGT-N-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS  301 (341)
Q Consensus       226 ~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~-~~  301 (341)
                      .+.+|+... . .+.|...++..... .......-.....|++++++..|+.+. ..+.|..+|+............ .-
T Consensus       212 ~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l  290 (400)
T 3p5b_L          212 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  290 (400)
T ss_dssp             TTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred             ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence            555555443 2 47888888875432 222222334678999998777776665 4578999998643332222221 02


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....++++. .+.++.+-...+.|..+|..+|+.+..+
T Consensus       291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            344567763 3445666667788999998888766554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=0.0049  Score=57.47  Aligned_cols=231  Identities=12%  Similarity=0.056  Sum_probs=134.0

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCC--CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~  145 (341)
                      |-.|+.++-|..++..++... .+.....  ....-....+.++.. ...+        .+..|+.++-+..++..... 
T Consensus       326 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~-d~~g--------~lWigt~~~Gl~~~~~~~~~-  394 (781)
T 3v9f_A          326 IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCD-DGQG--------KLWIGTDGGGINVFENGKRV-  394 (781)
T ss_dssp             EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEE-CTTS--------CEEEEEBSSCEEEEETTEEE-
T ss_pred             EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEE-cCCC--------CEEEEeCCCcEEEEECCCCe-
Confidence            777887888999988654432 2211000  000112233444432 2223        67777766667777653221 


Q ss_pred             ccccCCceEEEEE---eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405          146 SAESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       146 ~~~~~~~~v~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                              +..+.   ......|.++..++++.+.+ |+.++.|..+|..+++... +.....      ....|.++.. 
T Consensus       395 --------~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~------~~~~v~~i~~-  457 (781)
T 3v9f_A          395 --------AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEKN------ELLDVRVFYE-  457 (781)
T ss_dssp             --------EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTTT------CCCCEEEEEE-
T ss_pred             --------EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCCC------CCCeEEEEEE-
Confidence                    11111   11235688888887776555 6666679999987765432 221100      1245788877 


Q ss_pred             ecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe-c-----CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEE
Q 019405          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-R-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       223 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  296 (341)
                       .+++. |..|+. +-|..||..+++  ...+.. .     ...|.++...++|.+.+ |+.++-|..||..+++... +
T Consensus       458 -d~~g~-lwigt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~  530 (781)
T 3v9f_A          458 -DKNKK-IWIGTH-AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-F  530 (781)
T ss_dssp             -CTTSE-EEEEET-TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE-E
T ss_pred             -CCCCC-EEEEEC-CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-c
Confidence             66664 555555 568899987644  222221 1     35788999988886554 4554458889987765433 3


Q ss_pred             ecc---ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          297 IGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       297 ~~~---~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      ...   ....|.++...++|.+.++.. +|.|..||.++++
T Consensus       531 ~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          531 NQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             CTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred             cCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence            211   135789999988888666554 6655888877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.15  E-value=0.0018  Score=60.03  Aligned_cols=168  Identities=11%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeC---CCeEEEEECCCCc-ee--eecCCCCCCccCccCCeeeeEEEEEecCCC
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCE-KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (341)
                      +.++..........+.|+||+++|+..+.   ...|.++|+.++. ..  ..+....        .....++.|  +. +
T Consensus       262 ~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--------~~~~~s~~~--~~-g  330 (751)
T 2xe4_A          262 VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--------KGVRYDVQM--HG-T  330 (751)
T ss_dssp             EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--------TTCCEEEEE--ET-T
T ss_pred             EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--------CCceEEEee--ee-C
Confidence            34554333344667899999998886553   3468889987652 11  2222211        122344444  23 4


Q ss_pred             CEEE-EEeCC----CeEEEEEcCCCCceeEE-EEecCC--CeEEEEEcCCCceEEEEeCCCC--EEEEEC-------CCC
Q 019405          228 RKFV-AGTND----HQVRLYDTSAQRRPVMS-FDFRET--PIKAVAEEPDSFNIYIGNGSGD--LASVDI-------RTG  290 (341)
Q Consensus       228 ~~l~-~~~~d----~~i~iwd~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~g~~dg~--i~iwd~-------~~~  290 (341)
                      ..|+ ....+    ..|..+|+.+... ... +..+..  .+..+.+. .+.++++...++.  |+++|+       ..+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g  408 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG  408 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence            4444 44333    3677777664221 222 333433  34445554 2345556666665  556675       333


Q ss_pred             eEEeEEeccccCceeEEEe----cCCCC-EEEEEeCC---CcEEEEEcCCCc
Q 019405          291 KLLGCFIGKCSGSIRSIAR----HPTLP-IIASCGLD---SYLRFWDIKTRQ  334 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~----~~~~~-~l~s~~~d---g~v~iwd~~~~~  334 (341)
                      +....+.......+..+.+    ++++. ++++.+..   ..+..+|+.+++
T Consensus       409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3123332210122334433    34554 44443332   357777877664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.12  E-value=0.0034  Score=53.99  Aligned_cols=157  Identities=8%  Similarity=-0.114  Sum_probs=95.0

Q ss_pred             ceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEE
Q 019405          164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRL  241 (341)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~i  241 (341)
                      ....++++| ++.+.++-..++.|+.+|..++.....+.....       ..+...++|  +|+++.| ++-...+.|+.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~-------~~~~~~ia~--dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT-------KGSNFHIVW--HPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC-------CSSCEEEEE--CTTSSEEEEEETTTTEEEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC-------CCCcccEEE--eCCCCEEEEEeCCCCEEEE
Confidence            445678888 666666666678899999987765222211110       012346889  8899844 45556789999


Q ss_pred             EEcCC--CCc-eeEEEEec---------------CCCeEEEEE---------cCCCceEEEEeCCCCEEEEECCCCeEEe
Q 019405          242 YDTSA--QRR-PVMSFDFR---------------ETPIKAVAE---------EPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (341)
Q Consensus       242 wd~~~--~~~-~~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~g~~dg~i~iwd~~~~~~~~  294 (341)
                      ++...  +.. ....+.+.               -..-..+++         .+++.++++-...+.|+.++. ++... 
T Consensus       300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-  377 (433)
T 4hw6_A          300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-  377 (433)
T ss_dssp             EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-
T ss_pred             EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-
Confidence            88763  211 01222221               113456888         677766666666788999985 56443 


Q ss_pred             EEeccc-----------------cCceeEEEec-CCCCEEEEEeCCCcEEEEEcC
Q 019405          295 CFIGKC-----------------SGSIRSIARH-PTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       295 ~~~~~~-----------------~~~i~~~~~~-~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ++.+..                 -.....|+++ +++.++++-...+.|+.++++
T Consensus       378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            332210                 1235678998 566666666667788887764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.11  E-value=0.0018  Score=52.93  Aligned_cols=185  Identities=10%  Similarity=0.023  Sum_probs=106.7

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCC--CeEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~  202 (341)
                      .+++-..++.+..++.+.         +....+..  ......++++++++++++....  ..|..+|..+++.......
T Consensus        45 lyv~d~~~~~I~~~d~~g---------~~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~  113 (306)
T 2p4o_A           45 IFVTNHEVGEIVSITPDG---------NQQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL  113 (306)
T ss_dssp             EEEEETTTTEEEEECTTC---------CEEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EEEEeCCCCeEEEECCCC---------ceEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence            444545667776665421         12333433  4568899999999876655432  2477778777765432221


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---------cCCCeEEEEEcCCCceE
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------RETPIKAVAEEPDSFNI  273 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l  273 (341)
                      ...        .....++.  .+++..+++-..++.|..+|...++..+.....         .-.....+  +|++..|
T Consensus       114 ~~~--------~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          114 PDA--------IFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             TTC--------SCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             CCc--------cccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            110        11234444  344444555446888999987653211211110         11123455  7888766


Q ss_pred             EEEe-CCCCEEEEECCC-CeE--EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          274 YIGN-GSGDLASVDIRT-GKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       274 ~~g~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +++. ..+.|..|++.. ++.  ...+..  ......++++++|+++++....+.|.++|.. |+.
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence            6554 567899999864 332  111211  1345678999999887777778899999975 654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0055  Score=52.64  Aligned_cols=158  Identities=7%  Similarity=-0.047  Sum_probs=92.4

Q ss_pred             CceEEEEecC-CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEE
Q 019405          163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVR  240 (341)
Q Consensus       163 ~~i~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~  240 (341)
                      .....++++| ++.++++-..++.|..++...+..........        ..+...++|  +|++++ +++-...+.|.
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--------~~~P~gia~--~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--------SGWEFHIQF--HPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--------SSCCEEEEE--CTTSSEEEEEETTTTEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--------CCcceeEEE--cCCCCEEEEEECCCCEEE
Confidence            3456788999 66766666677899999998665422211111        133667899  899994 45555678999


Q ss_pred             EEEcCCCCce---eEEEEecC---------------CCeE-EEEEc--------CCCceEEEEeCCCCEEEEECCCCeEE
Q 019405          241 LYDTSAQRRP---VMSFDFRE---------------TPIK-AVAEE--------PDSFNIYIGNGSGDLASVDIRTGKLL  293 (341)
Q Consensus       241 iwd~~~~~~~---~~~~~~~~---------------~~v~-~~~~~--------~~~~~l~~g~~dg~i~iwd~~~~~~~  293 (341)
                      .++.......   ...+.+..               ..-. .++..        +++.+.++=...+.|+.++. +++..
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence            9887642110   12222210               0112 44443        34555555555678888884 56544


Q ss_pred             eEEec---------c-------ccCceeEEEecCC-CCEEEEEeCCCcEEEEEcC
Q 019405          294 GCFIG---------K-------CSGSIRSIARHPT-LPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       294 ~~~~~---------~-------~~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~  331 (341)
                      .....         .       .-.....++++|+ +.++++-..+..|+.++++
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            33321         0       0114678999994 6566666667788887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.0013  Score=53.98  Aligned_cols=146  Identities=8%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe--cCCCC---EEEEEeC---CCeEEEEE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHR---KFVAGTN---DHQVRLYD  243 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~~~~~---d~~i~iwd  243 (341)
                      |...+++...+.+-+.+||+ +++.+..+....           ++.+...|  .-.++   ++++...   +++|++|+
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-----------~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~  105 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-----------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECCSC-----------EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-----------cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence            34456666667788999999 888888876432           44444421  11222   2333333   57999998


Q ss_pred             cCCCCceeEEEEe------cC-CCeEEEEE--cCC-Cc-eEEEEeCCCCEEEEECC-------CCeEEeEEeccccCcee
Q 019405          244 TSAQRRPVMSFDF------RE-TPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR-------TGKLLGCFIGKCSGSIR  305 (341)
Q Consensus       244 ~~~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~g~~dg~i~iwd~~-------~~~~~~~~~~~~~~~i~  305 (341)
                      +.....++..+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+++++|...  +.+.
T Consensus       106 iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~E  183 (355)
T 3amr_A          106 IDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTE  183 (355)
T ss_dssp             ECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEE
T ss_pred             ECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcc
Confidence            7432223444421      11 44566777  774 43 68888889999999882       34677888764  5788


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .++..+....|..+-+|.-|..++.+
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCC
Confidence            99999988999999998777666754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.97  E-value=0.00047  Score=62.87  Aligned_cols=94  Identities=9%  Similarity=-0.067  Sum_probs=57.2

Q ss_pred             CCCCEEEEEeCCC-----------eEEEEEcCCCCceeEEEE---ecCCC-eEEEEEcCCCceEEEEeCC----------
Q 019405          225 DDHRKFVAGTNDH-----------QVRLYDTSAQRRPVMSFD---FRETP-IKAVAEEPDSFNIYIGNGS----------  279 (341)
Q Consensus       225 ~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~~g~~d----------  279 (341)
                      .++++++.|+.++           .|.+||..+..  -....   ..... -.+++..|++++++.|+.+          
T Consensus       409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence            3677788877542           67788877643  22221   11222 2345667899999998864          


Q ss_pred             -CCEEEEECCCCeEEeE--EeccccCceeEEEecCCCCEEEEEeC
Q 019405          280 -GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       280 -g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                       ..+.+||..+.+....  +... ........+.|++++++.|+.
T Consensus       487 ~~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEEEEECC
T ss_pred             ccceEEEcCCCCceeecCCCCCc-cccccHhhcCCCcEEEecCCC
Confidence             4689999987764321  1111 112233456789999999884

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.97  E-value=0.0037  Score=49.21  Aligned_cols=213  Identities=10%  Similarity=0.071  Sum_probs=121.6

Q ss_pred             ccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccc
Q 019405           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (341)
Q Consensus        45 ~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (341)
                      +.+-...+.-+++.++..   .++++...++.|...|.. ++.+..+...       .....-.+++.....        
T Consensus        22 l~g~~~~lSGla~~~~~~---~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------g~~D~EGIa~~~~g~--------   82 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSN---TLFSTINKPAAIVEMTTN-GDLIRTIPLD-------FVKDLETIEYIGDNQ--------   82 (255)
T ss_dssp             CTTCCSCEEEEEEETTTT---EEEEEEETTEEEEEEETT-CCEEEEEECS-------SCSSEEEEEECSTTE--------
T ss_pred             CCCcccCcceeEEeCCCC---EEEEEECCCCeEEEEeCC-CCEEEEEecC-------CCCChHHeEEeCCCE--------
Confidence            444445677788887643   356667788999999997 8877776541       112344455443222        


Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEe-----ecCCceEEEEecCCCCEEEEeeCCCeEEEEECC---CCce
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD---KCEK  196 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~---~~~~  196 (341)
                      .+++.-.++.+.++.+......     ..+.....     ........++++|.++.|+++.......+|.+.   ....
T Consensus        83 ~~vs~E~~~~l~~~~v~~~~~i-----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~  157 (255)
T 3qqz_A           83 FVISDERDYAIYVISLTPNSEV-----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE  157 (255)
T ss_dssp             EEEEETTTTEEEEEEECTTCCE-----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred             EEEEECCCCcEEEEEcCCCCee-----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence            4455555677777776533210     01122211     223456899999998777777665555555543   1111


Q ss_pred             eeecCCCC-CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC---------CCeEEEEE
Q 019405          197 IWTAKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAE  266 (341)
Q Consensus       197 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~  266 (341)
                      +..+.... .....   ...+.++++. +..+.+++....++.+.++|... + ++..+....         ..--.|+|
T Consensus       158 l~i~~~~~~~~~~~---~~d~S~l~~d-p~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          158 LHISKDKALQRQFT---LDDVSGAEFN-QQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             CEEEECHHHHHTCC---SSCCCEEEEE-TTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred             eeeecchhhccccc---cCCceeEEEc-CCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEE
Confidence            11111000 00001   1236788996 34566777777888999999775 3 344444321         24578999


Q ss_pred             cCCCceEEEEeCCCCEEEEECC
Q 019405          267 EPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       267 ~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      .++|+ |+..+..+.++.|...
T Consensus       232 d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          232 DASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             CTTCC-EEEEETTTEEEEEEC-
T ss_pred             CCCCC-EEEEcCCceEEEEEec
Confidence            99997 5555777777777543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.95  E-value=0.0064  Score=51.43  Aligned_cols=217  Identities=9%  Similarity=-0.039  Sum_probs=114.2

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ...++|.+...   .++.+-...+.|..+++..+.....+..        .......+++-...+.       .+++-..
T Consensus       118 ~~gl~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~~~~~~~--------~~~~p~glavd~~~g~-------lY~~d~~  179 (386)
T 3v65_B          118 AIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEVVST--------GLESPGGLAVDWVHDK-------LYWTDSG  179 (386)
T ss_dssp             EEEEEEETTTT---EEEEEETTTTEEEEEETTSCCEEEEECS--------SCSCCCCEEEETTTTE-------EEEEETT
T ss_pred             cEEEEEecCCC---eEEEEeCCCCcEEEEecCCCCcEEEEeC--------CCCCccEEEEEeCCCe-------EEEEcCC
Confidence            34455554332   2455555678899998865443222211        0112223333222221       4444445


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEee-CC-CeEEEEECCCCceeeecCCCCCCccC
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KG-VEVNVWDLDKCEKIWTAKPPPKNSLG  209 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~i~d~~~~~~~~~~~~~~~~~~~  209 (341)
                      .+.+.+.+++...        ...+.. ..-.....++++|.+..|+... .. +.|..+++............      
T Consensus       180 ~~~I~~~~~dg~~--------~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~------  244 (386)
T 3v65_B          180 TSRIEVANLDGAH--------RKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH------  244 (386)
T ss_dssp             TTEEEECBTTSCS--------CEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS------
T ss_pred             CCeEEEEeCCCCc--------eEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC------
Confidence            5566555543111        111111 1224567889998766655543 33 67888887643222222111      


Q ss_pred             ccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          210 IFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                         -.+...+++  ++++..| ++-...+.|..+|+..... ...+.........+++ ..+.++++-...+.|..+|..
T Consensus       245 ---~~~PnGlav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          245 ---LFWPNGLTI--DYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             ---CSCEEEEEE--EGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred             ---CCCeeeEEE--eCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECC
Confidence               134678899  6555544 4555667899999875332 2223323345567888 345556666677889999977


Q ss_pred             CCeEEeEEeccccCceeEEEe
Q 019405          289 TGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~  309 (341)
                      +++.+..+... ......+++
T Consensus       318 ~G~~~~~i~~~-~~~p~gi~v  337 (386)
T 3v65_B          318 TGKNQEIIRNK-LHFPMDIHT  337 (386)
T ss_dssp             TCCSCEEEECS-CSCCCCEEE
T ss_pred             CCcceEEEccC-CCCCceEEE
Confidence            77766665543 233344443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.013  Score=54.66  Aligned_cols=229  Identities=16%  Similarity=0.105  Sum_probs=130.4

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccccc
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA  147 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~  147 (341)
                      |..|+.++-|.+|+..+++... +..  +  .......+.++.. ...+        .+..++.++-+..++...     
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~-~~~--~--~~~~~~~v~~i~~-d~~g--------~lWigt~~~Gl~~~~~~~-----  436 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIY-NKE--N--RELLSNSVLCSLK-DSEG--------NLWFGTYLGNISYYNTRL-----  436 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEEC-C---------CCCSBEEEEEE-CTTS--------CEEEEETTEEEEEECSSS-----
T ss_pred             EEEEeCCCcEEEEECCCCeEEE-ccC--C--CCCCCcceEEEEE-CCCC--------CEEEEeccCCEEEEcCCC-----
Confidence            7778877779999987543321 111  0  0112244544432 2223        677777666666665421     


Q ss_pred             ccCCceEEEEEe--ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          148 ESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       148 ~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                          +.++.+..  .....|.++..++++.+.+ |+. +-|..||..+++........... .   ....|.++..  .+
T Consensus       437 ----~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~-~---~~~~i~~i~~--d~  504 (781)
T 3v9f_A          437 ----KKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQ-L---LENFVRSIAQ--DS  504 (781)
T ss_dssp             ----CEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSS-C---SCSCEEEEEE--CT
T ss_pred             ----CcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccc-c---ccceeEEEEE--cC
Confidence                22333321  1235688888888776555 444 56899998776543322111000 0   1245888887  67


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--  299 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--  299 (341)
                      ++.+ ..|+.++-+..||..+.+  ...+..    ....|.++...++|.+.++ +.+|.+..||..+++.. .+...  
T Consensus       505 ~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~g  579 (781)
T 3v9f_A          505 EGRF-WIGTFGGGVGIYTPDMQL--VRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEG  579 (781)
T ss_dssp             TCCE-EEEESSSCEEEECTTCCE--EEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGT
T ss_pred             CCCE-EEEEcCCCEEEEeCCCCe--EEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCC
Confidence            7755 455554457778876532  333432    1346889988888875554 44665588998776532 23211  


Q ss_pred             -ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          300 -CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       300 -~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                       ....|.++...++|.+.+++ .+| |..+|.++++
T Consensus       580 l~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          580 LPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKC  613 (781)
T ss_dssp             CSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTE
T ss_pred             CCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCc
Confidence             13468889998888766654 444 6777776543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.0041  Score=50.62  Aligned_cols=160  Identities=11%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             EEEEecCCCCEEEEee-CCCeEEEEECCCCceeee-cCCCC--CCccCccCCeeeeEEEEEe-cCCCCEEEEEe------
Q 019405          166 AFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPP--KNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT------  234 (341)
Q Consensus       166 ~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~------  234 (341)
                      .+++|++....+..++ ..++|..||...+..... +....  ..     ....+..+.+.. .|++.++++..      
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----GEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----CSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----CcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            4678877666666555 689999999975543322 22211  11     012356777710 15666666543      


Q ss_pred             -------CCCeEEEEEcC---CCCceeEEEEe--c----------C-CCeEEEEEcCCCceEEEEeCC-CCEEEEECCCC
Q 019405          235 -------NDHQVRLYDTS---AQRRPVMSFDF--R----------E-TPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTG  290 (341)
Q Consensus       235 -------~d~~i~iwd~~---~~~~~~~~~~~--~----------~-~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~  290 (341)
                             .+..|..||+.   +++. +.....  .          . .....++..++|+..++++.. +.|..++....
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                   26789999998   6553 433331  1          1 247789999999999988888 88888887633


Q ss_pred             eEEeEEe--c---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          291 KLLGCFI--G---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       291 ~~~~~~~--~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                       .+..+.  .   ......+.|+++|++..|+....+|.+..+|+.+
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             322221  1   1122367999999999888887799999999874

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.85  E-value=0.0022  Score=55.11  Aligned_cols=154  Identities=16%  Similarity=0.031  Sum_probs=92.4

Q ss_pred             eEEEEecCC--CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC---C-e
Q 019405          165 IAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H-Q  238 (341)
Q Consensus       165 i~~~~~~~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~-~  238 (341)
                      ...++++|+  ...|+.+...+.|+.+|..+++........          .....+++  +++++++++....   . .
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------~~P~giav--d~dG~lyVad~~~~~~~~g  208 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI----------GQCADVNF--TLNGDMVVVDDQSSDTNTG  208 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC----------SCEEEEEE--CTTCCEEEEECCSCTTSEE
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC----------CCccEEEE--CCCCCEEEEcCCCCcccce
Confidence            457899984  444554444478999999877655443311          33778899  8899855444321   1 2


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcC-CCceEEEEeCCCCEEEEECCCCeEEeEE-eccccCceeEEEecCCCCE-
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI-  315 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~-  315 (341)
                      +..++..........+. .-.....++++| ++.+.++-..++.|+.+|..++.....+ .......-..++|+|+++. 
T Consensus       209 v~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          209 IYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             EEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             EEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            33333332211112222 223456788999 6655555556788999999877663322 2211223346999999994 


Q ss_pred             EEEEeCCCcEEEEEcC
Q 019405          316 IASCGLDSYLRFWDIK  331 (341)
Q Consensus       316 l~s~~~dg~v~iwd~~  331 (341)
                      +++-...+.|+.++..
T Consensus       288 Yvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCEEEEEeCC
Confidence            4455566789998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.80  E-value=0.011  Score=49.28  Aligned_cols=206  Identities=8%  Similarity=-0.044  Sum_probs=109.9

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ...++|.+...   .++.+-...+.|..+++..+.....+..        .......+++-...+.       .+++-..
T Consensus        75 ~~~l~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~~~~~~~--------~~~~p~glavd~~~g~-------ly~~d~~  136 (349)
T 3v64_C           75 AIALDFHHRRE---LVFWSDVTLDRILRANLNGSNVEEVVST--------GLESPGGLAVDWVHDK-------LYWTDSG  136 (349)
T ss_dssp             EEEEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEEECS--------SCSCCCEEEEETTTTE-------EEEEETT
T ss_pred             eEEEEEecccc---EEEEEeccCCceEEEecCCCCceEEEeC--------CCCCccEEEEecCCCe-------EEEEcCC
Confidence            34555554332   2444555678898888865443222211        1122234444322221       4455555


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEe-eCC-CeEEEEECCCCceeeecCCCCCCccC
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKG-VEVNVWDLDKCEKIWTAKPPPKNSLG  209 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~  209 (341)
                      .+.+.+.+++...        ...+.. ..-.....++++|.+..|+.. ... +.|..+++..... ..+....     
T Consensus       137 ~~~I~~~~~dG~~--------~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~-----  201 (349)
T 3v64_C          137 TSRIEVANLDGAH--------RKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTH-----  201 (349)
T ss_dssp             TTEEEEEETTSCS--------CEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSS-----
T ss_pred             CCeEEEEcCCCCc--------eEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECC-----
Confidence            5666666643211        111111 122456789999866655544 334 6788888764322 2221111     


Q ss_pred             ccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          210 IFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                         -.+...+++  ++++..|. +-...+.|..+|+..... ...+.........+++ .++.++++-...+.|..++..
T Consensus       202 ---~~~PnGla~--d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~  274 (349)
T 3v64_C          202 ---LFWPNGLTI--DYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF  274 (349)
T ss_dssp             ---CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred             ---CCCcceEEE--eCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEcc
Confidence               134678899  76555554 445567899999875332 2223223345567887 345555566667889888876


Q ss_pred             CCeEEeEEe
Q 019405          289 TGKLLGCFI  297 (341)
Q Consensus       289 ~~~~~~~~~  297 (341)
                      +|+.+..+.
T Consensus       275 ~G~~~~~i~  283 (349)
T 3v64_C          275 TGKNQEIIR  283 (349)
T ss_dssp             TCCSCEEEE
T ss_pred             CCCccEEec
Confidence            676555444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.75  E-value=0.00037  Score=63.87  Aligned_cols=161  Identities=10%  Similarity=-0.083  Sum_probs=91.7

Q ss_pred             eEEEEecCCC-CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CC-CeEEE
Q 019405          165 IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-HQVRL  241 (341)
Q Consensus       165 i~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-~~i~i  241 (341)
                      ...+++++.+ +++++-...+.|.++++........+....         .....+++  .|.+.+|+.+. .. +.|..
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------~~P~giav--Dp~~g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------SKPRAIVV--DPVHGFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------CCCCCEEC--CSSSSCCEECCCSSSCCEEB
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------CCcceEEE--ccCCCcEEEcccCCCCeEEE
Confidence            3457777544 444444556789999987543332222111         12456677  66555444433 22 67888


Q ss_pred             EEcCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEec-cccCceeEEEecCCCCEEEE
Q 019405          242 YDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       242 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s  318 (341)
                      +++.....  ..+ ...-.....|+|+|++..|+.+. ..+.|..+++........+.. ........|++..+ .++++
T Consensus       524 ~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywt  600 (699)
T 1n7d_A          524 GGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWT  600 (699)
T ss_dssp             CCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred             EeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEE
Confidence            77764322  222 11223456899999765555544 567899999864322222211 00123445666544 45556


Q ss_pred             EeCCCcEEEEEcCCCceeeee
Q 019405          319 CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....+.|..+|..+|+.+..|
T Consensus       601 d~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          601 DIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             CSTTTCEEEEETTTEEEEECC
T ss_pred             eCCCCeEEEEEccCCCceEEe
Confidence            666789999998888877655

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.72  E-value=0.029  Score=51.97  Aligned_cols=238  Identities=8%  Similarity=-0.097  Sum_probs=128.8

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+. ...|+..++........+..         ...+..+.+....+.       .+++-...+.|..+++......
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~---------~~~~~gl~~d~~~~~-------lY~sD~~~~~I~~~~l~g~~~~  459 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASNR-------IYWSDLSQRMICSTQLDRAHGV  459 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEECS---------CSSEEEEEEETTTTE-------EEEEETTTTEEEEEEC------
T ss_pred             cccccc-ccceeEeeccCCcceeeecC---------CCceEEEeecccCCe-------eEEeeccceeEEEEeccCCCCC
Confidence            455444 45677777765544333222         244556665443331       4455555566766665432100


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                          .....+... .......|++++.++.|+ +-...+.|.+.++........+....         .....|++  .|
T Consensus       460 ----~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l---------~~P~gIaV--Dp  523 (791)
T 3m0c_C          460 ----SSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DP  523 (791)
T ss_dssp             ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ET
T ss_pred             ----cceeEEEec-CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC---------CCcceEEE--ec
Confidence                001122211 223456788887665444 55567889999987543322222111         23678888  66


Q ss_pred             CCCEEEEEe-CC-CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEecc-cc
Q 019405          226 DHRKFVAGT-ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS  301 (341)
Q Consensus       226 ~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~-~~  301 (341)
                      ...+|+... .+ +.|...++..... ...+...-.....|++++.+..|+.+. ..+.|..+++........+... .-
T Consensus       524 ~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l  602 (791)
T 3m0c_C          524 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  602 (791)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred             CCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCcc
Confidence            655555443 33 6888888875432 222222335678999998776666654 4567999998644333323221 01


Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....+|++.. +.++++-...+.|...|..+|+.+..+
T Consensus       603 ~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          603 AHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             SSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            2344666643 345555556678888887777665544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.023  Score=49.35  Aligned_cols=162  Identities=9%  Similarity=0.025  Sum_probs=95.1

Q ss_pred             ceEEEEecCC-CCEEEEeeCCCeEEEEECC-------CCce-----------eee-cCCCCCCccCccCCeeeeEEEEEe
Q 019405          164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLD-------KCEK-----------IWT-AKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       164 ~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~-------~~~~-----------~~~-~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                      ....++++|+ +.++++-..++.|..+|+.       ++..           ... +...        ...+...++|  
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~--------~~~~p~~ia~--  317 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIA--------DPSWEFQIFI--  317 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECS--------SSSCCEEEEE--
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecC--------CCCCceEEEE--
Confidence            3457788995 5555566677889999987       4443           001 1111        1244678999  


Q ss_pred             cCCCCE-EEEEeCCCeEEEEEcCCCCcee---EEEEec---C------------CCeE-EEEEc-------CCCceEEEE
Q 019405          224 IDDHRK-FVAGTNDHQVRLYDTSAQRRPV---MSFDFR---E------------TPIK-AVAEE-------PDSFNIYIG  276 (341)
Q Consensus       224 ~~~~~~-l~~~~~d~~i~iwd~~~~~~~~---~~~~~~---~------------~~v~-~~~~~-------~~~~~l~~g  276 (341)
                      +|+++. +++-...+.|+.++.......+   ..+-+.   .            ..-. .+...       +++.++++=
T Consensus       318 ~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD  397 (496)
T 3kya_A          318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD  397 (496)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred             cCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence            899995 4455567889997765322111   223221   0            1123 44554       456666665


Q ss_pred             eCCCCEEEEECCCCeEEeEEecc--------------c---------cCceeEEEecCC-CCEEEEEeCCCcEEEEEcCC
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGK--------------C---------SGSIRSIARHPT-LPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~--------------~---------~~~i~~~~~~~~-~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .....|+.++ .+|. +.++-+.              .         -.....|+++++ +.++++=..+..||.++++.
T Consensus       398 ~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          398 RLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             CCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            6678899998 4564 3334321              0         123568999996 76666666778999999876


Q ss_pred             Cceee
Q 019405          333 RQLLS  337 (341)
Q Consensus       333 ~~~~~  337 (341)
                      ..+++
T Consensus       476 ~~~~~  480 (496)
T 3kya_A          476 EENVA  480 (496)
T ss_dssp             CC---
T ss_pred             Ccccc
Confidence            55443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.67  E-value=0.02  Score=48.38  Aligned_cols=233  Identities=12%  Similarity=0.085  Sum_probs=144.8

Q ss_pred             CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (341)
Q Consensus        62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~  141 (341)
                      +|..+.+|.-. ..++.|+|+++.+.++.....         ..++--.|.+...          +.--.+..+..|+++
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~VvfWkWis~~~----------l~lVT~taVyHWsi~  133 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNT----------VALVTDNAVYHWSME  133 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEEEETTE----------EEEECSSEEEEEESS
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCceEEEecCCCe----------EEEEcCCeeEEeccc
Confidence            34444566543 789999999998888777753         4566566666544          222235579999985


Q ss_pred             ecccccccCCceEEEEEeec---CCceEEEEecCCCCEEEEee-------CCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                      .       ...++++|+...   +..|..-..+++.++++..+       -.|.+.+|..+.+. .+.+++|..      
T Consensus       134 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa------  199 (494)
T 1bpo_A          134 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA------  199 (494)
T ss_dssp             S-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEE------
T ss_pred             C-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeee------
Confidence            3       334788887533   24567777788888877543       24678899887543 233444321      


Q ss_pred             CCeeeeEEEEEecC--C-CCEEEEEeC---CCeEEEEEcCCC---Cce--eEEEE---e---cCCCeEEEEEcCCCceEE
Q 019405          212 TPTWFTSAAFLSID--D-HRKFVAGTN---DHQVRLYDTSAQ---RRP--VMSFD---F---RETPIKAVAEEPDSFNIY  274 (341)
Q Consensus       212 ~~~~v~~~~~~~~~--~-~~~l~~~~~---d~~i~iwd~~~~---~~~--~~~~~---~---~~~~v~~~~~~~~~~~l~  274 (341)
                         ....+..  ..  . ..+++.+..   .+.++|.++...   ..+  .+...   .   ..+--.++..++.-..++
T Consensus       200 ---~F~~~~~--~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          200 ---SFAQFKM--EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             ---EEEEEEC--TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             ---eeEEEec--CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence               1111111  10  0 113333333   268899988543   111  11111   1   123345788888777888


Q ss_pred             EEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       275 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .-+.-|.|++||+.++.++..-+-. ..+|..-+-+....-++.....|.|.--.++...
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EEecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            8899999999999999999877765 6777776666666666666688877766665543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.52  E-value=0.049  Score=49.12  Aligned_cols=234  Identities=7%  Similarity=-0.062  Sum_probs=124.3

Q ss_pred             eEEEEccCCeEEEeeCCCCc--chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      +|+-+. ...|+..++....  ......         .......+.+....+.       .+++-...+.|..++++...
T Consensus        11 ~~~~~~-~~~I~~i~~~~~~~~~~~~~~---------~~~~~~~ld~~~~~~~-------ly~sD~~~~~I~r~~~~g~~   73 (619)
T 3s94_A           11 LLLYAN-RRDLRLVDATNGKENATIVVG---------GLEDAAAVDFVFSHGL-------IYWSDVSEEAIKRTEFNKTE   73 (619)
T ss_dssp             CEEEEC-SSBEEEECCC---------CB---------CCSCEEEEEEETTTTE-------EEEEETTTTEEEEEEC----
T ss_pred             eEEEec-cccEEEEeCCCCcceEEEEEc---------CCCceEEEEEEeCCCE-------EEEEECCCCeEEEEEccCCC
Confidence            344443 6788888886542  111111         1244566666544441       34444445666666654221


Q ss_pred             cccccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                             ....+... .-.....+++++.++. .++-...+.|.+.++........+....         .....+++  
T Consensus        74 -------~~~~v~~~-~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------~~P~~Iav--  134 (619)
T 3s94_A           74 -------SVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--  134 (619)
T ss_dssp             --------CEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCCEEE--
T ss_pred             -------ceEEEEeC-CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------CCCceEEE--
Confidence                   01111111 1145778999985554 4455567899999987543222221111         22567788  


Q ss_pred             cCCCCEEEEEeC--CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccc
Q 019405          224 IDDHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC  300 (341)
Q Consensus       224 ~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~  300 (341)
                      .|.+..|..+..  .+.|...++..... .......-.....+++++++..|+.+. ..+.|..+|+..........+. 
T Consensus       135 dp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-  212 (619)
T 3s94_A          135 DPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-  212 (619)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------
T ss_pred             ecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-
Confidence            666555544442  46777777765332 222222334578999998766666554 5678999998654332222212 


Q ss_pred             cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .....+|++..+ .++.+-...+.|...|..+|+....+
T Consensus       213 ~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          213 LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             ---CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence            223357777655 45555556788999999888765543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.44  E-value=0.0053  Score=56.25  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=70.3

Q ss_pred             ceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeCCCeEE
Q 019405          164 TIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR  240 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~  240 (341)
                      ....++++|.+.+|+....  .+.|..+++.... ...+....        -.+...|++  ++++. ++++-...+.|.
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~--------l~~PnGlav--d~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN--------IQWPNGITL--DLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSS--------CSSCCCEEE--CTTTCCEEEEETTTTEEE
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCC--------CCCccEEEE--eccCCEEEEEecCCCeEE
Confidence            4567788886665554432  2577777764322 11111110        133567888  76654 445555677899


Q ss_pred             EEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405          241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  298 (341)
                      .+++....  ...+..   .......|++..+ .++++....+.|..+|..+++.+..+..
T Consensus       566 ~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          566 SIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            99987533  222221   1122345566544 4555556678999999988888777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0067  Score=49.91  Aligned_cols=200  Identities=10%  Similarity=0.038  Sum_probs=102.6

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeee--eccccccccccceeEEE-cccceeEEEEeeec
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLF--KRQREESSSRSRTLLTC-TTKGKASMRSIEVT  143 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~  143 (341)
                      ++++++.||.|.-.|.++|+.+.+++...       ..+.......  ....       ..++.. +.||.+..++... 
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-------~~p~~~~~~~~~~~~~-------~~~vv~p~~dG~l~a~~~~~-   76 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPEN-------FQPLIEIQEPSRLETY-------ETLIIEPFGDGNIYYFNAHQ-   76 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGG-------SCCSEECCCSCTTTSS-------EEEEECCSTTTEEEEEETTT-
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCc-------cCCcEEecCCccccCC-------cEEEEEECCCCEEEEEECCC-
Confidence            58899999999999999999988877620       0111110000  0011       123232 5788887777532 


Q ss_pred             ccccccCCceEEEEEeecCCceEE--EEec-----------CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          144 KVSAESSCSTVKSWNVCASGTIAF--SKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       144 ~~~~~~~~~~v~~~~~~~~~~i~~--~~~~-----------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                              | ...|.......+..  +...           ..+..+++|+.++.+...|+++|+.++.+........ .
T Consensus        77 --------G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~-~  146 (339)
T 2be1_A           77 --------G-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY-F  146 (339)
T ss_dssp             --------E-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred             --------C-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc-c
Confidence                    2 23354432221110  1110           1456788999999999999999999999876432100 0


Q ss_pred             cCCeeeeEEE---EEecCCCCEEEEEeCCCeEEEEEcCCCCce---eEEEEecCCC--eE-EEEEcCCCceEEEEeCCCC
Q 019405          211 FTPTWFTSAA---FLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFRETP--IK-AVAEEPDSFNIYIGNGSGD  281 (341)
Q Consensus       211 ~~~~~v~~~~---~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~--v~-~~~~~~~~~~l~~g~~dg~  281 (341)
                       ......|..   +.....+..++.+..+..+.+.+ ++++.-   ..........  +. .-..+.++.+ +.++.||.
T Consensus       147 -~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~  223 (339)
T 2be1_A          147 -GSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKS  223 (339)
T ss_dssp             -------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTE
T ss_pred             -cccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCE
Confidence             000000111   00001234666666666666665 333210   1111111000  00 0001124555 45788999


Q ss_pred             EEEEECCCCeEEe
Q 019405          282 LASVDIRTGKLLG  294 (341)
Q Consensus       282 i~iwd~~~~~~~~  294 (341)
                      |.-+|..+|+.+.
T Consensus       224 v~A~d~~~G~~~W  236 (339)
T 2be1_A          224 LLASDLDFRIARW  236 (339)
T ss_dssp             EEEECSTTCCEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999988888765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.33  E-value=0.0095  Score=50.13  Aligned_cols=117  Identities=14%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee------------eecCCCCCCccCccCCeeeeEEEEEe-cCCCCEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------------WTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKF  230 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l  230 (341)
                      .+..+..+|+|++||..+.. .|.|-.+..+...            +.+...   ......+..|..+.||| ...+..|
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~---~~~~~~~s~I~qVlWHPl~~~ds~L  142 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSID---EEEVGPKSSIKKVLFHPKSYRDSCI  142 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGG---GCC--CCCCEEEEEECTTBGGGCEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcC---CcccCCCCceeEEEeccccCCCCeE
Confidence            57889999999999988665 7998888732211            011110   01111246799999954 1245688


Q ss_pred             EEEeCCCeEEEEEcCC-CCceeEEEE---------ecCCCeEEEEEcCCCceEEEEe--CCCCEEEE
Q 019405          231 VAGTNDHQVRLYDTSA-QRRPVMSFD---------FRETPIKAVAEEPDSFNIYIGN--GSGDLASV  285 (341)
Q Consensus       231 ~~~~~d~~i~iwd~~~-~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iw  285 (341)
                      ++-..|+.|++||+.. ...|. .+.         .....|.+++|.+++-.|++.+  .+|.|+-.
T Consensus       143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999999986 23333 332         1225788999999887777755  77888765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.31  E-value=0.14  Score=49.71  Aligned_cols=274  Identities=8%  Similarity=-0.009  Sum_probs=135.0

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEecc--CCCCCceEEEEcc-CCeEEEeeCCCCcchheeeccCCCCC
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID--DSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGA   99 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~   99 (341)
                      .|.+..+++.+.  . .....+. .-+..+.|+++.+.  +...++++++|.. |++|+|+++.+.+.+......     
T Consensus       531 g~~l~~fel~~~--~-L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~-----  601 (1158)
T 3ei3_A          531 GRALYYLQIHPQ--E-LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG-----  601 (1158)
T ss_dssp             TTEEEEEEEETT--E-EEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC-----
T ss_pred             CCEEEEEEeeCC--c-eeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC-----
Confidence            455666666643  1 1111121 23456788877643  3334678999996 999999999865444322210     


Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~  179 (341)
                        ......++....-.+      ..+|..+..||.+.-+.++...   +.- ...+..... ..++.-..+...+..-+.
T Consensus       602 --~~~~p~si~l~~~~~------~~~L~igl~dG~l~~~~~d~~t---g~l-~d~r~~~LG-~~pv~L~~~~~~~~~~V~  668 (1158)
T 3ei3_A          602 --GEIIPRSILMTTFES------SHYLLCALGDGALFYFGLNIET---GLL-SDRKKVTLG-TQPTVLRTFRSLSTTNVF  668 (1158)
T ss_dssp             --SSCCEEEEEEEEETT------EEEEEEEETTSEEEEEEECTTT---CCE-EEEEEEECC-SSCCEEEEEESSSCEEEE
T ss_pred             --CCCCCcEEEEEEeCC------CcEEEEEeCCCeEEEEEEcCCC---Ccc-ccceeEEcC-CCceEEEEEeeCCceeEE
Confidence              111222333322211      1278899999998777654311   000 001111111 223333333333332222


Q ss_pred             eeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeee-EEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCc-eeEEEE
Q 019405          180 GGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFT-SAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRR-PVMSFD  255 (341)
Q Consensus       180 ~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~  255 (341)
                      +..+....+|.-+ ++.... +...           .+. ...|. +.. .+-++..+ ++.++|..+..... +++++.
T Consensus       669 a~s~rp~liy~~~-~~l~~s~l~~~-----------~v~~~~~F~-se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip  734 (1158)
T 3ei3_A          669 ACSDRPTVIYSSN-HKLVFSNVNLK-----------EVNYMCPLN-SDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP  734 (1158)
T ss_dssp             EESSSCEEEEESS-SSEEEEEBSSS-----------CCCEEEEEC-CSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE
T ss_pred             EECCCCEEEEEcC-CceEEeccChH-----------HhceEeccC-cccCCCcEEEEc-CCceEEEEecccCCeeEEEEe
Confidence            2223334444432 222211 1111           122 22342 211 23344333 45688888764322 234443


Q ss_pred             ecCCCeEEEEEcCCCceEEEEeCC-------------------------------------------------CCEEEEE
Q 019405          256 FRETPIKAVAEEPDSFNIYIGNGS-------------------------------------------------GDLASVD  286 (341)
Q Consensus       256 ~~~~~v~~~~~~~~~~~l~~g~~d-------------------------------------------------g~i~iwd  286 (341)
                      -. ..+..++++|+.+.++++..+                                                 +.|++.|
T Consensus       735 L~-~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lid  813 (1158)
T 3ei3_A          735 LY-ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIID  813 (1158)
T ss_dssp             CS-SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEE
T ss_pred             CC-CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEe
Confidence            33 466778888766655443211                                                 2377888


Q ss_pred             CCCCeEEeEEeccccCceeEEE---ecCC-CCEEEEEe----------CCCcEEEEEcCCC
Q 019405          287 IRTGKLLGCFIGKCSGSIRSIA---RHPT-LPIIASCG----------LDSYLRFWDIKTR  333 (341)
Q Consensus       287 ~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~s~~----------~dg~v~iwd~~~~  333 (341)
                      ..+++.+..+.-.....+.+++   |..+ ..+|+.|.          ..|.|++|++..+
T Consensus       814 p~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~  874 (1158)
T 3ei3_A          814 QHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG  874 (1158)
T ss_dssp             TTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred             CCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence            8888877666543234455554   4333 35777775          3478999998743

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.29  E-value=0.048  Score=44.06  Aligned_cols=146  Identities=12%  Similarity=0.048  Sum_probs=77.3

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEE
Q 019405          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (341)
Q Consensus       173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iw  242 (341)
                      ++++++.|+.+     ..+.+||+.+.+-...-..+..        ..-.+++.   .++.+++.|+.+     ..+.+|
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA--------REGAGLVV---ASGVIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC--------CBSCEEEE---ETTEEEEECCBCSSCBCCCEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC--------cccceEEE---ECCEEEEECCCCCCcccceEEEE
Confidence            56677777653     3688999877543221111110        11112222   156677777654     458889


Q ss_pred             EcCCCCceeEEEEec---CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          243 DTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       243 d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      |..+.+  -..+...   ......+.+  ++++++.|+.+     ..+.+||+.+.+....-... .......+..-++.
T Consensus       181 d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~  255 (301)
T 2vpj_A          181 DPHTGH--WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGR  255 (301)
T ss_dssp             ETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTE
T ss_pred             eCCCCc--EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCE
Confidence            987643  2222111   111122222  56677777764     46999999887654322111 11111112222677


Q ss_pred             EEEEEeCC-----CcEEEEEcCCCc
Q 019405          315 IIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       315 ~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      +++.|+.+     ..+.+||+++.+
T Consensus       256 i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          256 LYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             EEEEcCcCCCcccccEEEEcCCCCe
Confidence            77777765     367889988754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.28  E-value=0.054  Score=44.34  Aligned_cols=235  Identities=8%  Similarity=-0.023  Sum_probs=121.4

Q ss_pred             ecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCC
Q 019405           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA   99 (341)
Q Consensus        20 ~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   99 (341)
                      ++....|+.+++.........++..+    .....++|.....   .++.+-...+.|..+++..+.....+...     
T Consensus         9 ~~~~~~I~~i~l~~~~~~~~~~~~~~----~~~~~ld~d~~~~---~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-----   76 (318)
T 3sov_A            9 YANRRDLRLVDATNGKENATIVVGGL----EDAAAVDFVFSHG---LIYWSDVSEEAIKRTEFNKTESVQNVVVS-----   76 (318)
T ss_dssp             EECEEEEEEEETTCTTSCCEEEEEEE----EEEEEEEEEGGGT---EEEEEETTTTEEEEEETTSSSCCCEEEEE-----
T ss_pred             EEccCeEEEEECCCCceEEEEEecCC----CccEEEEEEeCCC---EEEEEECCCCcEEEEEccCCCceEEEEcC-----
Confidence            33456677777765411111111111    2233455554332   24555566788999988755322111110     


Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEE
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~  179 (341)
                        ......++++-...+.       .+++-...+.+.+.+++...         .+..-.........++++|.+..|+.
T Consensus        77 --~l~~p~glavd~~~g~-------ly~~d~~~~~I~~~~~dG~~---------~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           77 --GLLSPDGLACDWLGEK-------LYWTDSETNRIEVSNLDGSL---------RKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             --CCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSCS---------CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             --CCCCccEEEEEcCCCe-------EEEEECCCCEEEEEECCCCc---------EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence              0122233443222221       44454555667666653211         11111122345678899987666665


Q ss_pred             ee--CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          180 GG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       180 ~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      ..  ..+.|...++.... ...+....        -.+...+++  ++++..|. +-...+.|..+|+..... ......
T Consensus       139 td~~~~~~I~r~~~dG~~-~~~~~~~~--------l~~Pnglav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~  206 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSS-RFIIINSE--------IYWPNGLTL--DYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKG  206 (318)
T ss_dssp             EECSSSCEEEEEETTSCS-CEEEECSS--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS
T ss_pred             EecCCCCEEEEEEcCCCC-eEEEEECC--------CCCccEEEE--eccCCEEEEEECCCCEEEEEcCCCCce-EEEecC
Confidence            54  35788888876322 22221111        134678899  77555554 445678899999875332 222222


Q ss_pred             cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      .......+++.. +.++.+-...+.|..+|..+++.+..+.
T Consensus       207 ~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          207 SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            334456777753 3455565567889999998776655554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.27  E-value=0.1  Score=47.18  Aligned_cols=233  Identities=8%  Similarity=-0.102  Sum_probs=132.8

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      +|+.+ ..+.|+..++++......+..       ..-.....+.+-...+.       .+++-..++.|..++++...  
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~~-------lywtD~~~~~I~r~~~~g~~--   70 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDNR-------IYWTDISLKTISRAFMNGSA--   70 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS--
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCCE-------EEEEECCCCeEEEEECCCCC--
Confidence            45554 467899999976543222211       11244566666544441       44555556777666553211  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEE-EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                            ...+... .-.....+++++.+..| ++-...+.|.+.++........+...         -.....+++  .|
T Consensus        71 ------~~~v~~~-g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------l~~P~~iav--dp  132 (628)
T 4a0p_A           71 ------LEHVVEF-GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------LDSPRALAL--DP  132 (628)
T ss_dssp             ------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------CCCEEEEEE--ET
T ss_pred             ------cEEEEeC-CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------CCCcccEEE--cc
Confidence                  1112221 11345678887655544 45455678999998644322112111         123678888  66


Q ss_pred             CCCEEEEEe--CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCeEEeEEeccccC
Q 019405          226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       226 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      ....|....  ..+.|...++....  ...+...-.....+++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus       133 ~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~  208 (628)
T 4a0p_A          133 AEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP  208 (628)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred             CCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence            444555443  25678888887543  233333445678999999776666655 457899999865433 233322 33


Q ss_pred             ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ....+++.. +.++.+-...+.|...|..+|+....+
T Consensus       209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            456788765 445555556788999998777654443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.26  E-value=0.055  Score=44.06  Aligned_cols=193  Identities=11%  Similarity=0.094  Sum_probs=110.8

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeec-------CCceEEEEe---cCCCCEEEEee-------------
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-------SGTIAFSKV---DISEKFSLFGG-------------  181 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~-------~~~i~~~~~---~~~~~~l~~~~-------------  181 (341)
                      .+++.-..++|..|+.....        ...+ ....       ...+..+.+   +|++.++++..             
T Consensus        27 ~~vs~l~~g~V~~~~~~~~~--------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~   97 (334)
T 2p9w_A           27 FYQSNLYKGRIEVYNPKTQS--------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSH   97 (334)
T ss_dssp             EEEEETTTTEEEEECTTTCC--------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSS
T ss_pred             EEEEeccCCEEEEEcCCCCe--------EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccC
Confidence            34444468899888763211        1122 1211       113578899   68877777533             


Q ss_pred             CCCeEEEEECC---CCceeeecCCCCCCcc----CccCCeeeeEEEEEecCCCCEEEEEeCC-CeEEEEEcCCCCceeEE
Q 019405          182 KGVEVNVWDLD---KCEKIWTAKPPPKNSL----GIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       182 ~d~~v~i~d~~---~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~  253 (341)
                      .+..|..||+.   +++.++...-.....-    .-........++.  .++|+..++++.. +.|...+.... . +..
T Consensus        98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav--D~~GnaYVt~s~~~~~I~rV~pdG~-~-~~~  173 (334)
T 2p9w_A           98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ--DRDGNSYVAFALGMPAIARVSADGK-T-VST  173 (334)
T ss_dssp             SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE--CTTSCEEEEEEESSCEEEEECTTSC-C-EEE
T ss_pred             CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE--CCCCCEEEeCCCCCCeEEEEeCCCC-E-Eee
Confidence            25789999998   7777655432100000    0000134778888  8999999998888 88777776643 2 333


Q ss_pred             EEecC------CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE--EeEEe-ccc--cCceeEE-EecCCCCE-EEEEe
Q 019405          254 FDFRE------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFI-GKC--SGSIRSI-ARHPTLPI-IASCG  320 (341)
Q Consensus       254 ~~~~~------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~-~~~--~~~i~~~-~~~~~~~~-l~s~~  320 (341)
                      +....      ...+.++++|+|..|++....+.|..+|+.+...  +..-. +..  -.....| .--.+|+. |++.+
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            32211      1256899999998888887799999999874322  11110 110  1122332 33346666 55555


Q ss_pred             CCCcEEEEEc
Q 019405          321 LDSYLRFWDI  330 (341)
Q Consensus       321 ~dg~v~iwd~  330 (341)
                      ..+.+.+.+.
T Consensus       254 ~~~~~~l~S~  263 (334)
T 2p9w_A          254 APYAISFRSW  263 (334)
T ss_dssp             TTEEEEEECS
T ss_pred             CCCEEEEECC
Confidence            5655555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.045  Score=47.55  Aligned_cols=160  Identities=13%  Similarity=0.025  Sum_probs=91.9

Q ss_pred             ceEEEEecC-CCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEE------EecCCCCEEEEEeC
Q 019405          164 TIAFSKVDI-SEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF------LSIDDHRKFVAGTN  235 (341)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~l~~~~~  235 (341)
                      ....|+++| +...|+.+. ..+.|++.|++++............      ......++|      . ++++..|+++..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~------~~~p~~ia~~~~~~~~-d~~G~~lyvad~  212 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP------TNRIRSIAFNKKIEGY-ADEAEYMIVAID  212 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS------CSBEEEEEECCCBTTT-BCTTCEEEEEEC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc------cCCCcEEEEeeccccc-CCCCCEEEEEeC
Confidence            356889998 344444444 3467999999876665444332110      133667777      1 356775666554


Q ss_pred             CC-------eEEEEEcCC-CCce----eEEEEecCCCeEEEEEcCCC-ceEEEEeCCCCEEEEECC-------CCeE---
Q 019405          236 DH-------QVRLYDTSA-QRRP----VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIR-------TGKL---  292 (341)
Q Consensus       236 d~-------~i~iwd~~~-~~~~----~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~-------~~~~---  292 (341)
                      .+       .|.+++... +.-.    ...+.... ....++++|++ .++++-..++.|+.+|+.       ++..   
T Consensus       213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             CCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence            43       366665333 1110    02232222 34578899955 445555567889999987       5543   


Q ss_pred             --------EeE-EeccccCceeEEEecCCCCE-EEEEeCCCcEEEEEcC
Q 019405          293 --------LGC-FIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK  331 (341)
Q Consensus       293 --------~~~-~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~v~iwd~~  331 (341)
                              ... +.......-+.++|+|+|+. +++-+....|+.++..
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                    112 22221345679999999995 4444566788886543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.13  E-value=0.074  Score=42.99  Aligned_cols=146  Identities=11%  Similarity=0.053  Sum_probs=76.3

Q ss_pred             CCCEEEEeeCCC-----eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-------CeEE
Q 019405          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR  240 (341)
Q Consensus       173 ~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~  240 (341)
                      ++++++.|+.++     .+.+||+.+.+-...-..+..        ..-.+++.   -++.+++.|+.+       ..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--------RSSVGVGV---VGGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEE---ETTEEEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--------ccCceEEE---ECCEEEEEeCCCCCCCccccEEE
Confidence            566777777553     578889876543222111110        11112222   156677766542       3588


Q ss_pred             EEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      +||..+.+  -..+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+....-... .......+..-+
T Consensus       177 ~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~  251 (302)
T 2xn4_A          177 CYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCAVN  251 (302)
T ss_dssp             EEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEET
T ss_pred             EEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEEEC
Confidence            89987643  222211   1111122222  56777777764     46999999887654322111 111111112236


Q ss_pred             CCEEEEEeCCC-----cEEEEEcCCCc
Q 019405          313 LPIIASCGLDS-----YLRFWDIKTRQ  334 (341)
Q Consensus       313 ~~~l~s~~~dg-----~v~iwd~~~~~  334 (341)
                      +.+++.|+.++     .+.+||+.+.+
T Consensus       252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          252 GLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECCcCCCcccccEEEEcCCCCe
Confidence            77777877654     48999998764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.02  E-value=0.12  Score=43.55  Aligned_cols=145  Identities=9%  Similarity=-0.003  Sum_probs=89.0

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC----
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----  248 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----  248 (341)
                      ++..++.+ .++.||.-++......+.+..+..-.+     ..+..+..  +|+|++|+..+ +..|.|-.+..+.    
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f-----~~i~qlvl--SpsG~lLAl~g-~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVL-----DDTFHVIS--STSGDLLCLFN-DNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCC-----CTTCEEEE--CTTSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCccccc-----CceeEEEE--CCCCCEEEEec-CCeEEEEEecCccccCc
Confidence            45555543 346788777764333333333210000     12566777  99999999875 5689998887321    


Q ss_pred             -----c--eeEEEEec------CCCeEEEEEcCCC---ceEEEEeCCCCEEEEECCCC--eEEeEEecc--------ccC
Q 019405          249 -----R--PVMSFDFR------ETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTG--KLLGCFIGK--------CSG  302 (341)
Q Consensus       249 -----~--~~~~~~~~------~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~--------~~~  302 (341)
                           .  ..+.+.-.      ..+|..+.|+|-+   ..|++-..|+.|++||+...  ++. .+...        ...
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~  180 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN  180 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence                 1  12233322      4679999999954   68999999999999999852  122 22110        125


Q ss_pred             ceeEEEecCCCCEEEE--EeCCCcEEE
Q 019405          303 SIRSIARHPTLPIIAS--CGLDSYLRF  327 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s--~~~dg~v~i  327 (341)
                      .|.+++|.+++-.|..  .+..|.|+-
T Consensus       181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          181 DITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            7889999987765555  446676653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.99  E-value=0.13  Score=43.53  Aligned_cols=209  Identities=11%  Similarity=0.005  Sum_probs=110.4

Q ss_pred             CCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        50 ~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      .....++|.....   .++.+-..++.|+.+++....    ....+..        .......+++-...+.       .
T Consensus       112 ~~~~~l~~d~~~~---~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~--------~~~~p~glavD~~~~~-------l  173 (400)
T 3p5b_L          112 RNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSN-------I  173 (400)
T ss_dssp             SCEEEEEEETTTT---EEEEEETTTTEEEEEEC------CCCEEEECS--------SCSCEEEEEEETTTTE-------E
T ss_pred             CcceEEeeeeccC---ceEEEecCCCeEEEEEcccCCCCCcceEEEeC--------CCCCcccEEEEecCCc-------e
Confidence            3445566665333   244444567888888876422    1111110        1123344444322221       4


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPP  203 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~  203 (341)
                      +++-...+.|.+.+++...        ...+.. ........++++|.+..|+....  .+.|...++........+...
T Consensus       174 Y~~d~~~~~I~~~~~~g~~--------~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~  244 (400)
T 3p5b_L          174 YWTDSVLGTVSVADTKGVK--------RKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  244 (400)
T ss_dssp             EEEETTTTEEEEECTTTCS--------EEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred             EEEECCCCeEEEEeCCCCc--------eEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence            4555556666666543111        111221 12345678999987666665442  367888888643322222211


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCC
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                               -.+...+++  ++++..|+.+ ...+.|..+|+..... ......  .-.....+++. .+.++.+-...+
T Consensus       245 ---------l~~P~glav--d~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          245 ---------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             ---------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             ---------CCceEEEEE--EeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence                     134778899  7666665554 4567899999876432 222222  12334567773 344555666778


Q ss_pred             CEEEEECCCCeEEeEEec
Q 019405          281 DLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~  298 (341)
                      .|..+|..+|+.+..+..
T Consensus       312 ~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             SEEEEESSSCCCCEEEEC
T ss_pred             eEEEEEcCCCCceEEEec
Confidence            899999877766655543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.93  E-value=0.12  Score=41.89  Aligned_cols=145  Identities=10%  Similarity=0.054  Sum_probs=77.1

Q ss_pred             CCCEEEEeeCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---------CC
Q 019405          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH  237 (341)
Q Consensus       173 ~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~  237 (341)
                      ++++++.|+.+      ..+.+||..+.+-...-..+..        ..-.+++.   -++.+++.|+.         -.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~  169 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--------RCSHGMVE---ANGLIYVCGGSLGNNVSGRVLN  169 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEE---ETTEEEEECCEESCTTTCEECC
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--------cceeEEEE---ECCEEEEECCCCCCCCcccccc
Confidence            56777777765      4588999887643222111110        11112222   15666666653         34


Q ss_pred             eEEEEEcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeE--EeccccCceeEEE
Q 019405          238 QVRLYDTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIA  308 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~  308 (341)
                      .+.+||..+.+  -..+.....  .-.++... ++++++.|+.+     ..+.+||+.+.+....  +... ......+.
T Consensus       170 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~  245 (306)
T 3ii7_A          170 SCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCAA  245 (306)
T ss_dssp             CEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEEE
T ss_pred             eEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEEE
Confidence            58889988743  222221111  11122222 56677777654     4689999988754322  2211 11222222


Q ss_pred             ecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          309 RHPTLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       309 ~~~~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      +  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            2  66777888754     468899988754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.85  E-value=0.15  Score=41.87  Aligned_cols=153  Identities=12%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             CCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ...+..+.+.+++.+++.+...+..+-.|- .++.-..+...        ....+..+.+  .+++..+ ..+.+|.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~--------~~~~~~~~~~--~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRT--------TSRRLHNMGF--TPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECC--------SSSCEEEEEE--CTTSCEE-EEETTTEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCC--------CCCccceeEE--CCCCCEE-EEeCCceEEE
Confidence            346788899998887776654443333442 12211111111        1134777888  7777655 4456788777


Q ss_pred             EEcCCCCceeEEEE----ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCE
Q 019405          242 YDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPI  315 (341)
Q Consensus       242 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  315 (341)
                      .+...++. -..+.    .+...+.++.+.+++..++++. ++.| ++....|+.-..+...  ....++++.|.+++ .
T Consensus       230 s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~  305 (327)
T 2xbg_A          230 SDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-Q  305 (327)
T ss_dssp             EETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred             ecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-c
Confidence            64221211 11111    1223578899988877666554 6766 3444445433223211  13568889997555 4


Q ss_pred             EEEEeCCCcEEEEEc
Q 019405          316 IASCGLDSYLRFWDI  330 (341)
Q Consensus       316 l~s~~~dg~v~iwd~  330 (341)
                      ++.++.+|.|.-++-
T Consensus       306 ~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          306 GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEECSTTEEEEECC
T ss_pred             eEEEcCCceEEEEcC
Confidence            666678898776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.84  E-value=0.25  Score=48.40  Aligned_cols=232  Identities=13%  Similarity=0.061  Sum_probs=129.2

Q ss_pred             CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (341)
Q Consensus        62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~  141 (341)
                      +|..+.+|.-. ..++.|+|+++.+.++.....         ..++--.|.++..-       -+++   +..+..|++.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~VvfWkWis~~~l-------~lVT---~~aVyHW~~~  133 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNTV-------ALVT---DNAVYHWSME  133 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CCceEEEecCCCee-------EEEc---CCeEEEeccC
Confidence            44445555543 789999999988777776653         45655566555441       2333   4578999985


Q ss_pred             ecccccccCCceEEEEEeec---CCceEEEEecCCCCEEEEee-------CCCeEEEEECCCCceeeecCCCCCCccCc-
Q 019405          142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI-  210 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~-  210 (341)
                      ..       ..++++|+...   +..|..-..+++.++++..|       -.|.+.+|..+.+.. +.+.+|....... 
T Consensus       134 ~~-------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~  205 (1630)
T 1xi4_A          134 GE-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFK  205 (1630)
T ss_pred             CC-------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheec
Confidence            32       23455554321   24566667778888777433       357788998865322 2233332111000 


Q ss_pred             ----cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCC---Cce-----eEEEEe---cCCCeEEEEEcCCCceEEE
Q 019405          211 ----FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ---RRP-----VMSFDF---RETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       211 ----~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~-----~~~~~~---~~~~v~~~~~~~~~~~l~~  275 (341)
                          .++..+.|.+.. .+         ..+.++|.++...   ..+     +..+..   ..+--.++..++.-..++.
T Consensus       206 ~~~~~~~~~l~~f~~~-~~---------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          206 MEGNAEESTLFCFAVR-GQ---------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             cCCCCCCceEEEEEEe-cC---------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence                011112222221 01         1267888887542   111     111111   1222346777777778888


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      -+.-|.|+++|+.++.++..-+-. ..+|...+-+....-++.....|.|.--.+..
T Consensus       276 itk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             EecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            889999999999999987665543 45565555554433444444666665555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.77  E-value=0.18  Score=41.79  Aligned_cols=160  Identities=8%  Similarity=0.014  Sum_probs=87.2

Q ss_pred             EEEecCCCCEEEEe------------eCCCeEEEEECCCCc-eeeecCCCCCCccCccCCeeeeEEEEEecCCCC--EEE
Q 019405          167 FSKVDISEKFSLFG------------GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFV  231 (341)
Q Consensus       167 ~~~~~~~~~~l~~~------------~~d~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~  231 (341)
                      .+.+.|+|..++++            -.+|.|.++|..+.. ....+...... .. ........+.+.+..++.  +++
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-~~-~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-LD-ISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-CC-GGGCCEEEEEEEECTTCCEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-CC-cCceeeeeeEEEECCCCcEEEEE
Confidence            44556666554444            268999999987421 11222211100 00 001235566664332443  444


Q ss_pred             EEeC--CCeEEEEEcCCCCcee---EEEEec-CCCeEEEEEcCCCceEEEEeC-----------------CCCEEEEECC
Q 019405          232 AGTN--DHQVRLYDTSAQRRPV---MSFDFR-ETPIKAVAEEPDSFNIYIGNG-----------------SGDLASVDIR  288 (341)
Q Consensus       232 ~~~~--d~~i~iwd~~~~~~~~---~~~~~~-~~~v~~~~~~~~~~~l~~g~~-----------------dg~i~iwd~~  288 (341)
                      +-..  +.+|.+|++.......   ..+.+. -...+.+.+.++|.+.++...                 .|.|+-+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  5678888877543212   222221 235788999999987776541                 2456666653


Q ss_pred             CCeEEeEEeccccCceeEEEecCCCCEEEEE-eCCCcEEEEEcCC
Q 019405          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKT  332 (341)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~v~iwd~~~  332 (341)
                        +......+  -..-+.++|+||++.|..+ +..+.|..|++..
T Consensus       212 --~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          212 --DVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --CCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --eEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              32222222  3457899999999866555 4678999999863

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.75  E-value=0.17  Score=41.26  Aligned_cols=233  Identities=9%  Similarity=-0.004  Sum_probs=122.1

Q ss_pred             eecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCC---cchheeeccC
Q 019405           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG---DLRVAISNAG   95 (341)
Q Consensus        19 ~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~   95 (341)
                      -.+....|+.+++...     ........ ......+++.+...   .++.+-..++.|..+++...   .....+..  
T Consensus         5 l~~~~~~I~~i~~~~~-----~~~~~~~~-~~~p~g~~~d~~~~---~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--   73 (316)
T 1ijq_A            5 FFTNRHEVRKMTLDRS-----EYTSLIPN-LRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--   73 (316)
T ss_dssp             EEECBSSEEEEETTSC-----CCEEEECS-CSSEEEEEEETTTT---EEEEEETTTTEEEEEEC--------CEEEEC--
T ss_pred             EEECCCeEEEEECCCc-----ceEehhcC-CCceEEEEEEeCCC---EEEEEECCCCcEEEEECCCCCCCcccEEEEe--
Confidence            3344556777777654     12112222 23344566654332   24555566789999998651   21111111  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                           .......++++-...+.       .+++-...+.+.+.+++..         ..+..-.........++++|.+.
T Consensus        74 -----~~~~~p~glavd~~~~~-------ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~P~~iavdp~~g  132 (316)
T 1ijq_A           74 -----RDIQAPDGLAVDWIHSN-------IYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHG  132 (316)
T ss_dssp             -----SSCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTT
T ss_pred             -----CCCCCcCEEEEeecCCe-------EEEEECCCCEEEEEeCCCC---------ceEEEEECCCCCcceEEeCCCCC
Confidence                 00122334443222221       4455556677777665321         11211111234567899998766


Q ss_pred             EEEEeeCC--CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCceeE
Q 019405          176 FSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       176 ~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~  252 (341)
                      .|+.....  +.|..+++.. .....+....        -.+...+++  ++++..|+. -...+.|..+|+....  ..
T Consensus       133 ~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~--------~~~P~gla~--d~~~~~lY~~D~~~~~I~~~d~dg~~--~~  199 (316)
T 1ijq_A          133 FMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN--------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGN--RK  199 (316)
T ss_dssp             EEEEEECSSSCEEEEEETTS-CCEEEEECSS--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCS--CE
T ss_pred             EEEEEccCCCCeEEEEcCCC-CCeEEEEECC--------CCCceEEEE--eccCCEEEEEECCCCeEEEEecCCCc--eE
Confidence            65554432  6888888753 2222221111        134778899  766655554 4456799999987533  23


Q ss_pred             EEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          253 SFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       253 ~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      .+..   .-.....+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus       200 ~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          200 TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            3322   12345677775 35555566667889999987776555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.66  E-value=0.22  Score=41.33  Aligned_cols=59  Identities=12%  Similarity=0.065  Sum_probs=37.1

Q ss_pred             CeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE------EeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ....++| .+|.++++....+.|...++.....      ...+... ...+..+++.|||.++++..
T Consensus       269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence            4567777 4666666666667788777653321      1222222 35789999999998766653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.64  E-value=0.2  Score=40.58  Aligned_cols=146  Identities=14%  Similarity=0.046  Sum_probs=76.3

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeEEEE
Q 019405          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRLY  242 (341)
Q Consensus       173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~iw  242 (341)
                      ++++++.|+.+     ..+.+||+.+.+-...-..+..        ..-.+++.   -++.+++.|+.+     ..+.+|
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~y  189 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--------RIGVGVAV---LNRLLYAVGGFDGTNRLNSAECY  189 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--------CBSCEEEE---ETTEEEEECCBCSSCBCCCEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc--------ccceEEEE---ECCEEEEEeCCCCCCcCceEEEE
Confidence            56677776643     3588899877543222111110        11112222   156677777654     458888


Q ss_pred             EcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecCCCC
Q 019405          243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (341)
Q Consensus       243 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  314 (341)
                      |..+.+  -..+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+....-.......-.+++. -++.
T Consensus       190 d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~  264 (308)
T 1zgk_A          190 YPERNE--WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGR  264 (308)
T ss_dssp             ETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE
T ss_pred             eCCCCe--EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCE
Confidence            887643  111111   1111122233  66777777764     569999998876543211110111112222 2667


Q ss_pred             EEEEEeCC-----CcEEEEEcCCCc
Q 019405          315 IIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       315 ~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      +++.|+.+     ..+.+||+.+.+
T Consensus       265 i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          265 IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEcCcCCCcccceEEEEcCCCCE
Confidence            77777754     357899988754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.64  E-value=0.43  Score=44.33  Aligned_cols=207  Identities=11%  Similarity=-0.008  Sum_probs=107.5

Q ss_pred             CceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCc----chheeeccCCCCCCCCCCceeeEeeeecccccccccccee
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD----LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  126 (341)
                      ....+++.....   .++++-...+.|+.+++....    ....+..        .......+++-...++       .+
T Consensus       425 ~~~gl~~d~~~~---~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~-------LY  486 (791)
T 3m0c_C          425 NVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSN-------IY  486 (791)
T ss_dssp             SEEEEEEETTTT---EEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTE-------EE
T ss_pred             ceEEEeecccCC---eeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCc-------EE
Confidence            344555554322   245555566788888876421    1111110        1122334444322221       55


Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCC
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      ++-...+.|.+.+++..         ..++.-.........|+++|....|+....  .+.|...++........+... 
T Consensus       487 ~tD~~~~~I~v~~ldG~---------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-  556 (791)
T 3m0c_C          487 WTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-  556 (791)
T ss_dssp             EEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-
T ss_pred             EEecCCCeEEEEeCCCC---------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-
Confidence            55556677776665321         112221122345788999997666665442  367888888643332222211 


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCC
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGD  281 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~  281 (341)
                              -.+...|++  .+....|+.+ ...+.|..+++..... ...+...  -....+|++..+ .++++-...+.
T Consensus       557 --------l~~P~GLav--D~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~  624 (791)
T 3m0c_C          557 --------IQWPNGITL--DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  624 (791)
T ss_dssp             --------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT-EEEEEETTTTE
T ss_pred             --------CCCceEEEE--ecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC-EEEEEECCCCE
Confidence                    134778888  6555555544 4567899999876443 2333321  123446666433 34444445678


Q ss_pred             EEEEECCCCeEEeEEe
Q 019405          282 LASVDIRTGKLLGCFI  297 (341)
Q Consensus       282 i~iwd~~~~~~~~~~~  297 (341)
                      |...|..+++.+..+.
T Consensus       625 I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          625 IFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEETTTCCCCEEEE
T ss_pred             EEEEeCCCCcceEEee
Confidence            8888887776555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.59  E-value=0.28  Score=41.58  Aligned_cols=224  Identities=8%  Similarity=0.049  Sum_probs=127.2

Q ss_pred             CCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCce
Q 019405           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (341)
Q Consensus        74 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~  153 (341)
                      +..|.|-|+.++.........          .  ..+..++..        .+++--....+.|++++...        .
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~----------A--dsAIMnP~~--------~iiALrag~~lQiFnle~K~--------k   98 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS----------A--DSAIMNPAS--------KVIALKAGKTLQIFNIEMKS--------K   98 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC----------C--SEEEECSSS--------SCEEEEETTEEEEEETTTTE--------E
T ss_pred             CCeEEEEECCCCCcceecccc----------c--ceeeeCCCC--------cEEEEecCCeEEEEchHHhh--------h
Confidence            347889999876554322220          0  122334433        34444447889999987544        4


Q ss_pred             EEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE
Q 019405          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (341)
Q Consensus       154 v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  232 (341)
                      ++.+..  ...|.--.|-. .+.|+..+. ..|+-|+++. ..+...+..+..-     ....|..-..  +++.++++.
T Consensus        99 lks~~~--~e~VvfWkWis-~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L-----~~~QIInY~~--d~~~kW~~l  167 (494)
T 1bpo_A           99 MKAHTM--TDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-----AGCQIINYRT--DAKQKWLLL  167 (494)
T ss_dssp             EEEEEC--SSCCCEEEEEE-TTEEEEECS-SEEEEEESSSSCCCEEEEECCGGG-----TTCEEEEEEE--CTTSSEEEE
T ss_pred             hcceec--CCCceEEEecC-CCeEEEEcC-CeeEEecccCCCCchhheecchhc-----ccceEEEEEE--CCCCCeEEE
Confidence            444443  23444444533 344554444 4799999963 3455555544311     0123444444  778887764


Q ss_pred             Ee-------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCC--C-ceEEEEeC---CCCEEEEECCCC--------e
Q 019405          233 GT-------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD--S-FNIYIGNG---SGDLASVDIRTG--------K  291 (341)
Q Consensus       233 ~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~g~~---dg~i~iwd~~~~--------~  291 (341)
                      .+       -.|.+.+|..+...  -+.+.+|......+....+  . .+++.+..   .+.++|-++...        +
T Consensus       168 ~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k  245 (494)
T 1bpo_A          168 TGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK  245 (494)
T ss_dssp             EEEEEETTEEEEEEEEEESTTCC--EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred             EeecccCCcccceEEEeeccccc--cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence            33       24678899988633  5667777544433333211  1 23333333   278999888532        1


Q ss_pred             EEeEEec---cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          292 LLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       292 ~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      ....+..   ...+--.++..++.-..+..-+.-|.|++||+.+|.++..
T Consensus       246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            1111111   1133455788888888888889999999999999998864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.58  E-value=0.16  Score=38.68  Aligned_cols=150  Identities=4%  Similarity=-0.114  Sum_probs=80.4

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+..++|+|++.+.++  .+|.++-.+..+.+...=+.. . ..+...--....++.|  .+++.+.++  .||.|+-++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~-t~IG~~Gw~~F~a~~f--D~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-A-KKIGNGGWNQFQFLFF--DPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-C-EEEECSCGGGCSEEEE--CTTSCEEEE--ETTEEEEES
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-c-cEecccccccceEEEE--CCCCCEEEe--CCCEEEEeC
Confidence            5669999998886666  677777766544211100000 0 0000000011367778  889988777  569998887


Q ss_pred             cCCCCce-----eEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe------EEeEEeccccCceeEEEecC
Q 019405          244 TSAQRRP-----VMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       244 ~~~~~~~-----~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~  311 (341)
                      -.+....     -..+ ...=..+..|.+.|+|.+.++.  |+.++-....++.      ....+-...-.....+.|.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            5332110     0111 1111467899999999766665  7776544333211      01111101122445577899


Q ss_pred             CCCEEEEEeCCCcE
Q 019405          312 TLPIIASCGLDSYL  325 (341)
Q Consensus       312 ~~~~l~s~~~dg~v  325 (341)
                      ++.+.+..  ++.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            99877666  6633

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.56  E-value=0.26  Score=40.93  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             CCeEEEEEc-------CCCceEEEEeCCCCEEEEECCCC-eEE--eEEeccccCceeEEEecCCCCEEEEEe
Q 019405          259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       259 ~~v~~~~~~-------~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      .....++|.       .+|.++++....+.|...++... +..  ..+.......+..+++.|||.++++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            356778883       56777777667778888888743 322  223211135789999999998766654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.39  E-value=0.27  Score=40.82  Aligned_cols=143  Identities=12%  Similarity=0.007  Sum_probs=77.2

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCce--eeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEeC-C-
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTN-D-  236 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~-d-  236 (341)
                      .-..+++.|+++++++ ..++.|.+++  .++.  +..+...      .........+++  +|+   +..|.++.. + 
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~------~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~  100 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVY------HRGESGLLGLAL--HPRFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCC------CSTTCSEEEEEE--CTTTTTSCEEEEEEEECT
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEe------ecCCCCceeEEE--CCCCCCCCEEEEEEecCC
Confidence            4568899999985554 5668999998  3332  2222100      001234788999  776   445554433 2 


Q ss_pred             ----CeEEEEEcCCCC----cee-EEEEe---cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCCC-
Q 019405          237 ----HQVRLYDTSAQR----RPV-MSFDF---RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG-  290 (341)
Q Consensus       237 ----~~i~iwd~~~~~----~~~-~~~~~---~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~-  290 (341)
                          +.|..|+.....    +.+ ..+..   .......++|.|+|.+.++-+.             .|.|.-++.... 
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~  180 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP  180 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence                578888876431    111 11221   1112368999999965555322             145666665420 


Q ss_pred             -----------eEEeEE-eccccCceeEEEecC-CCCEEEEE
Q 019405          291 -----------KLLGCF-IGKCSGSIRSIARHP-TLPIIASC  319 (341)
Q Consensus       291 -----------~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~  319 (341)
                                 .....+ .++  .....++|+| ++.++++-
T Consensus       181 p~~npf~~~~~~~~~i~a~G~--rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          181 APGNPFLGRRGARPEVYSLGH--RNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             CTTCTTTTCTTSCTTEEEECC--SEECCCEECTTTCCEEEEE
T ss_pred             CCCCcccCCCCCCccEEEEcC--CCcccEEEECCCCCEEEEE
Confidence                       011111 122  3467899999 66655544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.28  E-value=0.39  Score=39.80  Aligned_cols=200  Identities=11%  Similarity=0.048  Sum_probs=101.1

Q ss_pred             cCCeEEEeeCCCCc-chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cc--cceeEEEEeeecccccc
Q 019405           73 KNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TT--KGKASMRSIEVTKVSAE  148 (341)
Q Consensus        73 ~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~--~g~~~i~~~~~~~~~~~  148 (341)
                      .+|.|.++|+.+.. ....+.... ..+....-....+..+....     ....|+++ ..  +..+.+|.++.....  
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g-~~~~~~~f~PhGi~~~~d~d-----g~~~L~Vvnh~~~~s~ielf~~d~~~~~--  152 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIG-NTLDISSFNPHGISTFIDDD-----NTVYLLVVNHPGSSSTVEVFKFQEEEKS--  152 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEEC-SSCCGGGCCEEEEEEEECTT-----CCEEEEEEECSTTCCEEEEEEEETTTTE--
T ss_pred             CCCeEEEEecCCCCCceEEEEccC-CCCCcCceeeeeeEEEECCC-----CcEEEEEEECCCCCCeEEEEEEECCCCE--
Confidence            68999999987421 122222210 00111123455666655311     01134333 22  456777777543210  


Q ss_pred             cCCceEEEEEeecCCceEEEEecCCCCEEEEee-----------------CCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-----------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       149 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                        ...+..+....-.....+.+.++|.+.++..                 ..|.|.-+|..  +.......         
T Consensus       153 --~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~---------  219 (355)
T 3sre_A          153 --LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG---------  219 (355)
T ss_dssp             --EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE---------
T ss_pred             --EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC---------
Confidence              0011112211123467888888888777643                 12445555542  11111111         


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCc--eeEEEEecCCCeEEEEEcC-CCceEEEEeCC-CCEEEEE
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEP-DSFNIYIGNGS-GDLASVD  286 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~d-g~i~iwd  286 (341)
                       -...+.++|  +|+++.|+.+. ..+.|..|++.....  ....+. .....-.+++.+ +|.+.+++..+ +.|..|+
T Consensus       220 -l~~pNGia~--spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          220 -FDFANGINI--SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             -ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             -CcccCcceE--CCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence             023678899  99998777654 578999999874221  122332 234556788998 58877766533 3455555


Q ss_pred             CC--CCeEEeEEe
Q 019405          287 IR--TGKLLGCFI  297 (341)
Q Consensus       287 ~~--~~~~~~~~~  297 (341)
                      ..  .+..+..++
T Consensus       296 P~~~~~s~v~rI~  308 (355)
T 3sre_A          296 AENPPGSEVLRIQ  308 (355)
T ss_dssp             TTSCCCEEEEEEE
T ss_pred             CCCCCCCEEEEEE
Confidence            44  244454444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.25  E-value=0.36  Score=39.18  Aligned_cols=146  Identities=14%  Similarity=0.055  Sum_probs=74.9

Q ss_pred             CCCEEEEeeCC--------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-C-----Ce
Q 019405          173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQ  238 (341)
Q Consensus       173 ~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----~~  238 (341)
                      ++++++.|+.+        ..+.+||..+.+-.. +......  .    .....+.+    ++.+++.|+. +     ..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYV--V----YGHTVLSH----MDLVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSC--C----BSCEEEEE----TTEEEEECCBCTTSCBCCC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCc--c----cceeEEEE----CCEEEEEeCCCCCCcccce
Confidence            56667777642        458899998764222 2111100  0    11112223    5667777765 2     46


Q ss_pred             EEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCC-----CEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          239 VRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      +.+||..+.+  -..+..   .......+.+  ++++++.|+.++     .+.+||+.+.+....-.......-.+++. 
T Consensus       167 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  241 (315)
T 4asc_A          167 MCVYDPKKFE--WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-  241 (315)
T ss_dssp             EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             EEEEeCCCCe--EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-
Confidence            8889987642  111111   1111122222  567777777654     48899998875443221110111112222 


Q ss_pred             CCCCEEEEEeCCC--------------cEEEEEcCCCc
Q 019405          311 PTLPIIASCGLDS--------------YLRFWDIKTRQ  334 (341)
Q Consensus       311 ~~~~~l~s~~~dg--------------~v~iwd~~~~~  334 (341)
                      -++.+++.|+.++              .+.+||+++.+
T Consensus       242 ~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            2667777777532              47788988764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.08  E-value=0.42  Score=38.39  Aligned_cols=146  Identities=16%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCc---eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-----CeE
Q 019405          173 SEKFSLFGGKG-----VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQV  239 (341)
Q Consensus       173 ~~~~l~~~~~d-----~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i  239 (341)
                      ++.+++.|+.+     ..+.+||+.+.+   -.. +.....       +..-.+++.   .++.+++.|+.+     ..+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~-------~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~  130 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNV-------RRGLAGATT---LGDMIYVSGGFDGSRRHTSM  130 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSS-------CCBSCEEEE---ETTEEEEECCBCSSCBCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCC-------CccceeEEE---ECCEEEEEcccCCCcccceE
Confidence            34556666543     468899988765   221 111110       011112222   156677777643     368


Q ss_pred             EEEEcCCCCceeEEEEec---CCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          240 RLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      .+||..+.+  -..+...   ......+.+  ++++++.|+.+     ..+.+||+.+.+....-... .......+..-
T Consensus       131 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~  205 (301)
T 2vpj_A          131 ERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALL  205 (301)
T ss_dssp             EEEETTTTE--EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE
T ss_pred             EEEcCCCCe--EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEE
Confidence            889987643  2222211   111122222  66777777754     45899999887654321111 11111111222


Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          312 TLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       312 ~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      ++.+++.|+.+     ..+.+||+.+.+
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            66777777764     468999998764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.99  E-value=1.3  Score=43.18  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=72.2

Q ss_pred             EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe-c-CCCCEEEEEe----------CCCeEEEEEcCCCCceeEE
Q 019405          186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-I-DDHRKFVAGT----------NDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       186 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~  253 (341)
                      |++.|..+.+.+..+.-..        ...+.+++... . ....++++|+          ..|.|.+|++...+..+..
T Consensus       809 i~lidp~t~~~i~~~~l~~--------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~  880 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQ--------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA  880 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCT--------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEeCCC--------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence            5555655555443333222        24455555431 2 2246888876          3478999998753321222


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      -...++++++++-- +|+ |++|- ...|++|++...+.+. .....-..|..+.....+.+++.|..-..|.+..
T Consensus       881 ~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~  952 (1158)
T 3ei3_A          881 EKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLA  952 (1158)
T ss_dssp             EEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEE
T ss_pred             EEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEE
Confidence            22346788887643 454 44433 4789999998665443 2111012233333434577888888776666644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.034  Score=45.73  Aligned_cols=111  Identities=11%  Similarity=0.102  Sum_probs=69.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCeEEEEEc--C-CCceEEEE-eCCCCEEEEECCCCeEEeEEeccc--
Q 019405          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEE--P-DSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKC--  300 (341)
Q Consensus       228 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~--  300 (341)
                      .+++.++.||.|.-+|..+++. +-.+... ..++....-.  + ++..++.. +.||.|+.++..+|.....+....  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            4788889999999999888764 4444432 1222221110  1 23334343 689999999999986655544320  


Q ss_pred             -cCceeE---EEe-c----CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          301 -SGSIRS---IAR-H----PTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       301 -~~~i~~---~~~-~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                       ..++..   ... .    ..+..+++++.+|.+.-.|+++|+.+.++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence             111211   000 0    14557889999999999999999998875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.90  E-value=0.59  Score=38.56  Aligned_cols=147  Identities=10%  Similarity=-0.035  Sum_probs=80.9

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEE---e
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAG---T  234 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~---~  234 (341)
                      ..-..+++.|++.++++--..|.|++++..+++..  ..+....     .........+++  +|+   +..|...   .
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~-----~~g~~GllGia~--~Pdf~~~g~lYv~yt~~  104 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS-----PSGEGGLLGIAL--SPDYASDHMVYAYFTSA  104 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-----CBTTBSEEEEEE--CTTHHHHCEEEEEEECS
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee-----ecCCCCceeeEe--ccccccCCEEEEEEecC
Confidence            35678999999997777655899999987655432  1121110     011245788999  664   3344432   2


Q ss_pred             CCCeEEEEEcCCCC-------ceeE---EEEe-cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCCC
Q 019405          235 NDHQVRLYDTSAQR-------RPVM---SFDF-RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTG  290 (341)
Q Consensus       235 ~d~~i~iwd~~~~~-------~~~~---~~~~-~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~  290 (341)
                      .++.|.-|.+....       ....   .+.. ....-..|.|.|+|.+.++.+.             .|.|.-.+....
T Consensus       105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            34566666655411       1111   1211 1123457999999976666432             345555555421


Q ss_pred             ---------eEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          291 ---------KLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       291 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                               ..+.. .++  .....++|+|+|.++++-
T Consensus       185 ip~~nPf~~~~i~a-~G~--RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          185 PAPGNPFPGSPVYS-YGH--RNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             BCTTCSSTTCCEEE-BCC--SBCCEEEECTTCCEEEEE
T ss_pred             ccCCCCCCCCeEEe-eCC--CCcceEEECCCCCEEEEe
Confidence                     11211 133  346789999988765543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.87  E-value=0.37  Score=38.88  Aligned_cols=146  Identities=14%  Similarity=0.152  Sum_probs=75.1

Q ss_pred             CCCEEEEeeCC----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------CeEEEE
Q 019405          173 SEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLY  242 (341)
Q Consensus       173 ~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~iw  242 (341)
                      ++.+++.|+.+    ..+.+||..+.+-...-..+...       .....+.+    ++.+++.|+.+      ..+.+|
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~  123 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSLAACAA----EGKIYTSGGSEVGNSALYLFECY  123 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSCEEEEE----TTEEEEECCBBTTBSCCCCEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cceeEEEE----CCEEEEECCCCCCCcEeeeEEEE
Confidence            44556666643    57889998876432221111110       11122222    56677777765      458889


Q ss_pred             EcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeC---------CCCEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       243 d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      |..+.+  -..+..   .......+.  -++++++.|+.         -..+.+||+.+.+....-.......-.+++. 
T Consensus       124 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  198 (306)
T 3ii7_A          124 DTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-  198 (306)
T ss_dssp             ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             eCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-
Confidence            988643  222211   111111222  25666666663         3458999998875433221110111112222 


Q ss_pred             CCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          311 PTLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       311 ~~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      -++.+++.|+.+     ..+.+||+.+.+
T Consensus       199 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          199 VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            266677777654     368889988754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.77  E-value=0.49  Score=38.07  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             CCCEEEEeeCC-----CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-----eEEEE
Q 019405          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLY  242 (341)
Q Consensus       173 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~iw  242 (341)
                      ++.+++.|+.+     ..+.+||..+.+-...-..+...       .....+.+    ++.+++.|+.++     .+.+|
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~  129 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR-------STLGAAVL----NGLLYAVGGFDGSTGLSSVEAY  129 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC-------BSCEEEEE----TTEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc-------cceEEEEE----CCEEEEEcCCCCCccCceEEEE
Confidence            45566666643     35888998776432221111100       11122223    567777777553     57788


Q ss_pred             EcCCCCceeEEEEecCC--CeEEEEEcCCCceEEEEeCC-------CCEEEEECCCCeEEeE--EeccccCceeEEEecC
Q 019405          243 DTSAQRRPVMSFDFRET--PIKAVAEEPDSFNIYIGNGS-------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP  311 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~  311 (341)
                      |..+.+  -..+..-..  .-.+++. -++++++.|+.+       ..+.+||+.+.+....  +... ... .+++. -
T Consensus       130 d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~~-~  203 (302)
T 2xn4_A          130 NIKSNE--WFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSG-AGVGV-L  203 (302)
T ss_dssp             ETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBS-CEEEE-E
T ss_pred             eCCCCe--EeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-ccc-ccEEE-E
Confidence            887643  222211111  1112222 256667776642       4589999988764432  2211 111 12222 2


Q ss_pred             CCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          312 TLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       312 ~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      ++.+++.|+.+     ..+.+||+.+.+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            66777777764     368899988754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.73  E-value=0.72  Score=38.23  Aligned_cols=149  Identities=9%  Similarity=-0.030  Sum_probs=75.6

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEe-C----
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGT-N----  235 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~-~----  235 (341)
                      ....+++.|+++.++++...|.|++++.. +.....+....  ............+++  +|+   +..|.... .    
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~--~v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP--DVWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC--CCCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECSS
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc--ccccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCCC
Confidence            45788999999834445567899999853 33221111110  000011234678899  774   34444432 2    


Q ss_pred             ---CCeEEEEEcCCCCc---eeE-EEEe------cCCCeEEEEEcCCCceEEEEeC-------------CCCEEEEECCC
Q 019405          236 ---DHQVRLYDTSAQRR---PVM-SFDF------RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRT  289 (341)
Q Consensus       236 ---d~~i~iwd~~~~~~---~~~-~~~~------~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~  289 (341)
                         ...|..|++.....   ... .+..      ....-..++|.|+|.+.++-+.             .|.|.-++...
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence               23566666653211   011 1111      1112357999999955554332             24566666642


Q ss_pred             Ce------------EEeEEeccccCceeEEEecC-CCCEEEE
Q 019405          290 GK------------LLGCFIGKCSGSIRSIARHP-TLPIIAS  318 (341)
Q Consensus       290 ~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~s  318 (341)
                      .-            ....+... -.....++|+| ++.++++
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEE
Confidence            10            11112111 23578899999 5554443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.70  E-value=1.1  Score=40.35  Aligned_cols=233  Identities=9%  Similarity=-0.018  Sum_probs=126.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      ++.++....|+.+++...  .. .....+.+ -.....++|.+...   .++.+-..++.|+.+++........+..   
T Consensus         8 ~Ll~s~~~~I~~i~l~~~--~~-~~~~~~~~-~~~~~~l~~d~~~~---~lywtD~~~~~I~r~~~~g~~~~~v~~~---   77 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETN--NN-NVAIPLTG-VKEASALDFDVTDN---RIYWTDISLKTISRAFMNGSALEHVVEF---   77 (628)
T ss_dssp             EEEEEETTEEEEEESSCT--TC-EEECCCCS-CSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSCSCEEEECS---
T ss_pred             EEEEEeCCcEEEEECCCC--Cc-ceEEEcCC-CCceEEEEEECCCC---EEEEEECCCCeEEEEECCCCCcEEEEeC---
Confidence            455557778888888754  11 11111222 23445666665443   2455556678999998864433222221   


Q ss_pred             CCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE
Q 019405           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (341)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~  176 (341)
                           ......++++-...++       .+++-...+.|.+.+++...       ..+.+ . ..-.....++++|....
T Consensus        78 -----g~~~P~GlAvD~~~~~-------LY~tD~~~~~I~v~~~dG~~-------~~~l~-~-~~l~~P~~iavdp~~G~  136 (628)
T 4a0p_A           78 -----GLDYPEGMAVDWLGKN-------LYWADTGTNRIEVSKLDGQH-------RQVLV-W-KDLDSPRALALDPAEGF  136 (628)
T ss_dssp             -----SCSCCCEEEEETTTTE-------EEEEETTTTEEEEEETTSTT-------CEEEE-C-SSCCCEEEEEEETTTTE
T ss_pred             -----CCCCcceEEEEeCCCE-------EEEEECCCCEEEEEecCCCc-------EEEEE-e-CCCCCcccEEEccCCCe
Confidence                 1122334444222221       44555555666666653211       11111 1 22345678999986655


Q ss_pred             EEEee--CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEE-EeCCCeEEEEEcCCCCceeEE
Q 019405          177 SLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       177 l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~  253 (341)
                      |+...  ..+.|...++........+..          -.+...+++  ++++..|.. -...+.|..+|+.....  ..
T Consensus       137 lY~tD~g~~~~I~r~~~dG~~~~~l~~~----------~~~P~Glal--D~~~~~LY~aD~~~~~I~~~d~dG~~~--~v  202 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGSERTTLVPN----------VGRANGLTI--DYAKRRLYWTDLDTNLIESSNMLGLNR--EV  202 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECS----------CSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSC--EE
T ss_pred             EEEeCCCCCCEEEEEeCCCCceEEEECC----------CCCcceEEE--ccccCEEEEEECCCCEEEEEcCCCCce--EE
Confidence            55544  246788888764332222221          134778899  776555554 45567899999876443  33


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeE
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC  295 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  295 (341)
                      +...-.....+++.. +.++++-...+.|...|..+++....
T Consensus       203 ~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          203 IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence            333334456788765 44444545578899999877654333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.44  E-value=1  Score=44.38  Aligned_cols=193  Identities=9%  Similarity=0.093  Sum_probs=103.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCC-CceeeecCCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPP  203 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~  203 (341)
                      .+++--...++.|++++....        ++.+..  ..+|.--.|-. .+.|+..+. ..|+-|++.. ..+...+..+
T Consensus        78 ~iiALrag~~lQiFnl~~k~k--------lks~~~--~e~VvfWkWis-~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           78 KVIALKAGKTLQIFNIEMKSK--------MKAHTM--TDDVTFWKWIS-LNTVALVTD-NAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             ceEEEecCCeEEEeehHHhhh--------hccccc--CCCceEEEecC-CCeeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence            344444477899999876542        222222  12333334432 334444443 3799999963 3444444433


Q ss_pred             CCCccCccCCeeeeEEEEEecCCCCEEEEEe-------CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc--CCC-ceE
Q 019405          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE--PDS-FNI  273 (341)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l  273 (341)
                      ..-.     ...|..-..  +++.++++..+       -.|.+.+|......  -+.+.+|......+...  +.. ..+
T Consensus       146 ~~L~-----~~QIinY~~--d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLA-----GCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcc-----cCeeEEeee--CCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEE
Confidence            2110     122333333  67777766433       34788999887633  45556665443333332  111 222


Q ss_pred             EEEeC---CCCEEEEECCCC---eE------EeEEecc--ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          274 YIGNG---SGDLASVDIRTG---KL------LGCFIGK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       274 ~~g~~---dg~i~iwd~~~~---~~------~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      +.+..   .+.++|-++...   ..      +..+-.+  ..+--.++..++.-..+..-+.-|.|.++|+.||.++..
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            22221   367888887432   11      1111110  123344677777777888888999999999999988753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.42  E-value=0.93  Score=37.44  Aligned_cols=55  Identities=9%  Similarity=-0.008  Sum_probs=29.6

Q ss_pred             CEEEEECCCCeE--EeEEeccccCceeEEEecCCCCEEEEEeCCC------cEEEEEcCCCceeee
Q 019405          281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS------YLRFWDIKTRQLLSA  338 (341)
Q Consensus       281 ~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~  338 (341)
                      .+.+||+.+.+.  +..+... ...  ..+...++++++.|+.++      .|.++++++++.+..
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            578999886543  3333322 111  222334677888888553      466678888876653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.25  E-value=0.24  Score=41.18  Aligned_cols=101  Identities=18%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE---ecCCCeEEEEEcCC---CceEEEEeC----C----CC
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S----GD  281 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~g~~----d----g~  281 (341)
                      ...++|  .|++++ +++..++.|+++|. .++..+..+.   ........++++|+   +..|+++..    +    +.
T Consensus        31 P~~ia~--~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAP--LGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEE--EETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEE--cCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            678889  678864 45566799999973 3332222211   12345789999997   445555443    2    56


Q ss_pred             EEEEECCCC-------eEE-eEEeccccCceeEEEecCCCCEEEEEe
Q 019405          282 LASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       282 i~iwd~~~~-------~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      |..|+....       +.+ ..+..........|+|.|+|.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            777876643       111 223321112346799999998777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.91  E-value=0.66  Score=37.49  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeE
Q 019405          226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL  292 (341)
Q Consensus       226 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~  292 (341)
                      ++.+++.|+.+     ..+.+||..+.+  -..+..   .......+.+  ++.+++.|+.+     ..+.+||+.+.+.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            56677776643     357888887643  111111   1111122222  56677777754     4589999987754


Q ss_pred             EeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          293 LGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      ...-.......-.+++.. ++.+++.|+.+     ..+.+||+.+.+
T Consensus       197 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          197 RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             eeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            322111101111122222 66777777765     468999988754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.89  E-value=1.7  Score=37.49  Aligned_cols=109  Identities=10%  Similarity=0.000  Sum_probs=59.4

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCcee--eecCCCCCCccCccCCeeeeEEEEEecCC---CCEEEEEeC---
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTN---  235 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~---  235 (341)
                      ....++|.|+|+++++-...+.|++++..+++..  ..+......   .........++|  +|+   +..|.....   
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~---~~g~~Gllgia~--~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND---ADGQNGLLGFAF--HPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC---TTSSCSEEEEEE--CTTTTTSCEEEEEEEEEC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc---cCCCCceeEEEE--CCCcCcCCEEEEEEeccc
Confidence            4568999999987776544457888876555432  222211000   001244778999  674   444444432   


Q ss_pred             ----------CCeEEEEEcCCCC----ceeEEE---Ee-cCCCeEEEEEcCCCceEEEEe
Q 019405          236 ----------DHQVRLYDTSAQR----RPVMSF---DF-RETPIKAVAEEPDSFNIYIGN  277 (341)
Q Consensus       236 ----------d~~i~iwd~~~~~----~~~~~~---~~-~~~~v~~~~~~~~~~~l~~g~  277 (341)
                                ...|.-|+.....    .....+   .. .......|+|.|+|.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      2356666654321    111112   11 123468899999997666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.78  E-value=0.19  Score=38.30  Aligned_cols=105  Identities=6%  Similarity=-0.059  Sum_probs=63.4

Q ss_pred             eeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc-----eeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       216 v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      +..++|  +|++.+.++  .+|.++-.+..+...     .-..+-. .-..-.++.|.|+|.+.++  .||.|+-++..+
T Consensus        43 ~~~laf--~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           43 FKFLFL--SPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             CSEEEE--CTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ceeEEE--CCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            678999  788887666  678777666544211     1111110 0011468899999977766  569998887643


Q ss_pred             CeEE------eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          290 GKLL------GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       290 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      ...-      ..+-...=..+..|.+.|+|.+.+..  |+.++-+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~  159 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA  159 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence            2110      11111002467899999999877776  7765443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.76  E-value=1.3  Score=35.79  Aligned_cols=145  Identities=14%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             CCCEEEEeeCC-------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC------CCeE
Q 019405          173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV  239 (341)
Q Consensus       173 ~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i  239 (341)
                      ++++++.|+.+       ..+.+||..+.+-...-..+..        ..-.+++.   .++.+++.|+.      -..+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~  177 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK--------VYGHNVIS---HNGMIYCLGGKTDDKKCTNRV  177 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC--------EESCEEEE---ETTEEEEECCEESSSCBCCCE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc--------ccccEEEE---ECCEEEEEcCCCCCCCccceE
Confidence            56677777753       3588889876543222111110        11112222   25667777664      2358


Q ss_pred             EEEEcCCCCceeEEEEecC--CCeEEEEEcCCCceEEEEeCC-----CCEEEEECCCCeEEe--EEeccccCceeEEEec
Q 019405          240 RLYDTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH  310 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~  310 (341)
                      .+||..+.+  -..+....  ..-.+++. -++++++.|+.+     ..+.+||+.+.+...  .+... ... .+++ .
T Consensus       178 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~-~~~~-~  251 (318)
T 2woz_A          178 FIYNPKKGD--WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSS-ISLV-S  251 (318)
T ss_dssp             EEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBS-CEEE-E
T ss_pred             EEEcCCCCE--EEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccc-eEEE-E
Confidence            899988743  22221111  11112222 256677777654     347789988765432  22211 111 1222 2


Q ss_pred             CCCCEEEEEeCC--------------CcEEEEEcCCCc
Q 019405          311 PTLPIIASCGLD--------------SYLRFWDIKTRQ  334 (341)
Q Consensus       311 ~~~~~l~s~~~d--------------g~v~iwd~~~~~  334 (341)
                      -++.+++.|+.+              ..+.+||+.+.+
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            356777777654              358889988754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.69  E-value=1.3  Score=35.73  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             CCCEEEEEeCC--------CeEEEEEcCCCCceeEEEEe-cCC-CeEEEEEcCCCceEEEEeC-C-----CCEEEEECCC
Q 019405          226 DHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDF-RET-PIKAVAEEPDSFNIYIGNG-S-----GDLASVDIRT  289 (341)
Q Consensus       226 ~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~-~~~-~v~~~~~~~~~~~l~~g~~-d-----g~i~iwd~~~  289 (341)
                      ++.+++.|+.+        ..+.+||..+.+  -..+.. ... .-.+++. -++++++.|+. +     ..+.+||+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            56677776632        458888887643  111111 000 1112222 35667777776 2     4699999988


Q ss_pred             CeEEeEEeccccCce-eEEEecCCCCEEEEEeCCC-----cEEEEEcCCCc
Q 019405          290 GKLLGCFIGKCSGSI-RSIARHPTLPIIASCGLDS-----YLRFWDIKTRQ  334 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i-~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~  334 (341)
                      .+....-... .... .+++. -++.+++.|+.++     .+.+||+.+.+
T Consensus       175 ~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          175 FEWKELAPMQ-TARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TEEEECCCCS-SCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CeEEECCCCC-CchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            7543321111 1111 12222 2667777777654     57888987754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.83  E-value=3.6  Score=37.06  Aligned_cols=157  Identities=8%  Similarity=-0.091  Sum_probs=88.2

Q ss_pred             CceEEEEecCC-CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEe-CCCeE
Q 019405          163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQV  239 (341)
Q Consensus       163 ~~i~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~-~d~~i  239 (341)
                      .....++++.. +++.++-+..+.|.+.++..... ..+....        -.....+++  .|. +.++++-. ....|
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-~~l~~~~--------l~~P~~iav--dp~~G~ly~tD~g~~~~I  460 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-KILISED--------LEEPRAIVL--DPMVGYMYWTDWGEIPKI  460 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTT--------CCSEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-EEEEECC--------CCCeeeEEE--EcCCCcEEEecCCCCCEE
Confidence            34567888864 44555555678899998864432 2222111        133678888  665 44444432 23677


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                      ...++..... .......-.....+++++++..|+.+.. .+.|..+++........+... -....+|+...+ .++.+
T Consensus       461 ~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glav~~~-~ly~t  537 (619)
T 3s94_A          461 ERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGD-YVYWT  537 (619)
T ss_dssp             EEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC-CCSSCCEEEETT-EEEEE
T ss_pred             EEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC-CCCcEEEEEECC-EEEEe
Confidence            7777764332 2222223346789999987766766654 467999988643222222221 223345666533 34444


Q ss_pred             EeCCCcEEEEEcCCC
Q 019405          319 CGLDSYLRFWDIKTR  333 (341)
Q Consensus       319 ~~~dg~v~iwd~~~~  333 (341)
                      -...+.|...|..+|
T Consensus       538 D~~~~~I~~~~k~~g  552 (619)
T 3s94_A          538 DWQRRSIERVHKRSA  552 (619)
T ss_dssp             CTTSSCEEEEESSSC
T ss_pred             ecCCCeEEEEEcCCC
Confidence            445567777777766

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=93.58  E-value=2.2  Score=33.86  Aligned_cols=160  Identities=13%  Similarity=0.029  Sum_probs=91.5

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .++.++.+|.+....+++-+.+.+.-+  +. ....+..+. ..+.  +.++++..+.+|.|+...+.+-. .. -.+..
T Consensus        37 ~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~-~~~~--~~~~~v~~T~~G~iKr~~l~~~~-~~-~~G~~  108 (276)
T 3no0_A           37 GLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAF-IREK--FGNRLLLATKKGYVKKIPLAEFE-YK-AQGMP  108 (276)
T ss_dssp             CEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEE-EGGG--SCSEEEEEETTSEEEEEEGGGTT-TC-STTEE
T ss_pred             EEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEE-CCcC--CCCEEEEEeCCCEEEEEEHHHhh-hh-cCCeE
Confidence            467778888887666555332211111  32 233333332 2221  23579999999999999875533 11 11111


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                      ... -..++.+..+...+.+.        .++..+..|.+..+.+..-+... ....-++..++..+..|..+...+++.
T Consensus       109 ~i~-lkegD~l~~~~~~~~~~--------~ill~T~~G~~~r~~~~eip~~g-R~a~Gv~~i~L~~~d~vv~~~~~~~~~  178 (276)
T 3no0_A          109 IIK-LTEGDEVVSIASSVDET--------HILLFTKKGRVARFSVREVPPST-PGARGVQGIKLEKNDETSGLRIWNGEP  178 (276)
T ss_dssp             CSC-CCTTCCEEEEEECCSSC--------EEEEEETTSEEEEEEGGGSCBCC-TTCCCEECCCCCTTCCEEEEEEESSCS
T ss_pred             EEe-cCCCCEEEEEEEeCCCC--------EEEEEECCCEEEEEEhhhCCCcC-CCCCCEEEEccCCCCEEEEEEEeCCCC
Confidence            111 12346676666555444        78888888988877765443321 111223444555566676666555667


Q ss_pred             EEEEeeCCCeEEEEECCC
Q 019405          176 FSLFGGKGVEVNVWDLDK  193 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~  193 (341)
                      .++..+..|.++...+..
T Consensus       179 ~ll~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          179 YLLVITAKGRVKKISHEE  196 (276)
T ss_dssp             EEEEEETTSCEEEEEGGG
T ss_pred             EEEEEeCCCcEEEeEHHH
Confidence            888889999998887643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.52  E-value=2.8  Score=34.70  Aligned_cols=65  Identities=9%  Similarity=0.027  Sum_probs=42.4

Q ss_pred             CCeEEEEEcC-------CCceEEEEeCCCCEEEEECCCCeEEeE--EeccccCceeEEEecCCCCEEEEEe-CCC
Q 019405          259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASCG-LDS  323 (341)
Q Consensus       259 ~~v~~~~~~~-------~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~-~dg  323 (341)
                      .....+.|..       ++.++++....+.|...++..++....  +.......+..+++.|+|.++++.. .+|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g  345 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG  345 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC
Confidence            3567788753       467777766778888888876654332  2111134789999999998666543 344

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.48  E-value=2.6  Score=34.34  Aligned_cols=146  Identities=8%  Similarity=-0.045  Sum_probs=77.8

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+..+.+.+++..++.+ .++.|.. ..+.++.-.......        ...+..+.+  .+++.+++.+...+..+-.|
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~--------~~~~~~~~~--~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA--------IGVMRNLNR--SPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC--------CCCEEEEEE--CTTSCEEEEETTSSEEEEEC
T ss_pred             CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC--------CcceEEEEE--cCCCcEEEEECCCcEEEEeC
Confidence            45666666666655554 4554422 122233222222111        134778888  67777776664433333333


Q ss_pred             cCCCCceeEEE-EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc---ccCceeEEEecCCCCEEEEE
Q 019405          244 TSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       244 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~  319 (341)
                      -. +.. -..+ ......+..+.+.+++..++ .+.+|.+++.+...++.-..+...   ....+..+++.+++.+++.+
T Consensus       191 ~g-G~t-W~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g  267 (327)
T 2xbg_A          191 PG-QTA-WEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG  267 (327)
T ss_dssp             TT-CSS-CEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE
T ss_pred             CC-CCc-eeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe
Confidence            21 121 1111 23445788899999886654 456787777653334433222211   12358899999887766665


Q ss_pred             eCCCcE
Q 019405          320 GLDSYL  325 (341)
Q Consensus       320 ~~dg~v  325 (341)
                       .++.|
T Consensus       268 -~~g~i  272 (327)
T 2xbg_A          268 -GAGAL  272 (327)
T ss_dssp             -STTCE
T ss_pred             -CCCeE
Confidence             46666

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.36  E-value=2.6  Score=33.98  Aligned_cols=137  Identities=4%  Similarity=-0.091  Sum_probs=76.1

Q ss_pred             EecCCCCEEEEeeCC--------------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe
Q 019405          169 KVDISEKFSLFGGKG--------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d--------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  234 (341)
                      -+++++++|+.+...              ..|+..++...+.......              .+..+  ++++++|+-..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~--s~~g~~Iy~~~  122 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYA--SLIGNYIYYLH  122 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEE--EEETTEEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEE--EEeCCEEEEEe
Confidence            345677777766543              3567777765543222111              11245  55777877665


Q ss_pred             ----CCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEEeccccCceeEEEe
Q 019405          235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (341)
Q Consensus       235 ----~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~  309 (341)
                          .+..|+..++....  ...+..+..    ..++|+++.|+-.+. ...|+.-++..+.....+.+    ... ..+
T Consensus       123 ~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~  191 (302)
T 3s25_A          123 YDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV  191 (302)
T ss_dssp             ESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred             ecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence                34456666665432  444554432    456778888775554 67888888876654433332    222 235


Q ss_pred             cCCCCEEEEEeCC--CcEEEEEcCC
Q 019405          310 HPTLPIIASCGLD--SYLRFWDIKT  332 (341)
Q Consensus       310 ~~~~~~l~s~~~d--g~v~iwd~~~  332 (341)
                      +|++.+|+-...+  ..|..-++..
T Consensus       192 ~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          192 VLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             eecCCEEEEEEcCCCcEEEEEECCC
Confidence            5888877665543  2455555543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.30  E-value=4.8  Score=36.84  Aligned_cols=116  Identities=11%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             CCCCEEEEeeCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeC--C-----CeEEE
Q 019405          172 ISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTN--D-----HQVRL  241 (341)
Q Consensus       172 ~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~--d-----~~i~i  241 (341)
                      .++++++.|+.++  .+.+||..+.+=.. +......+..   .....++.+  ..+ +.+++.|+.  +     ..+.+
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~---r~~~~a~v~--~~~~~~iyv~GG~~~~~~~~~~~v~~  572 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQN---SLVSAGLEF--DPVSKQGIILGGGFMDQTTVSDKAII  572 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGS---CCBSCEEEE--ETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCc---ccceeEEEE--eCCCCEEEEECCcCCCCCeeeCcEEE
Confidence            3778888887754  68999998754222 2110000000   011222444  333 667777765  2     46889


Q ss_pred             EEcCCCCc--e--eEEEEe---cCCCeEEEEEcCCCceEEEEeC--------CCCEEEEECCCCeEE
Q 019405          242 YDTSAQRR--P--VMSFDF---RETPIKAVAEEPDSFNIYIGNG--------SGDLASVDIRTGKLL  293 (341)
Q Consensus       242 wd~~~~~~--~--~~~~~~---~~~~v~~~~~~~~~~~l~~g~~--------dg~i~iwd~~~~~~~  293 (341)
                      ||+.+..-  .  ...+..   ....-.+++...++++++.|+.        ...+.+||+.+.+..
T Consensus       573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            99887540  0  112211   1111112333333677777774        345999999987664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.27  E-value=2.7  Score=33.93  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             CCCEEEEEeCC-------CeEEEEEcCCCCceeEEEEecCCCe--EEEEEcCCCceEEEEeC------CCCEEEEECCCC
Q 019405          226 DHRKFVAGTND-------HQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNG------SGDLASVDIRTG  290 (341)
Q Consensus       226 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~  290 (341)
                      ++.+++.|+.+       ..+.+||..+.+  -..+..-..+.  .+++. .++++++.|+.      -..+.+||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            56677777754       347788887643  22221111110  11222 36667777764      245999999887


Q ss_pred             eEEeEEeccccCceeEEEecCCCCEEEEEeCC-----CcEEEEEcCCCc
Q 019405          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQ  334 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~  334 (341)
                      +....-.......-.+++. -++.+++.|+.+     ..+.+||+.+.+
T Consensus       186 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          186 DWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            6433211110111112222 256777777643     256788887754

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=93.05  E-value=3  Score=33.75  Aligned_cols=254  Identities=8%  Similarity=0.009  Sum_probs=126.0

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeee
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~  142 (341)
                      +.+++++.+.+|.|+--.+.+-+....- .+.... ....++.+..+...+.+.        .++..+..|.+.-..+..
T Consensus         2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~-~~ke~D~l~~~~~~~~~~--------~ll~fT~~G~~~~~~~~e   72 (307)
T 1zi0_A            2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAA-RIKEEDFIDRLLVANTHD--------HILCFSSRGRVYSMKVYQ   72 (307)
T ss_dssp             CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--------EEEEEETTSEEEEEEGGG
T ss_pred             CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceee-eeCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEhhH
Confidence            3457888999999988776543221110 000000 012346666655555555        677777788766555433


Q ss_pred             cccccccCCceE--EEEEeecCCceEEEEe-c--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeee
Q 019405          143 TKVSAESSCSTV--KSWNVCASGTIAFSKV-D--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (341)
Q Consensus       143 ~~~~~~~~~~~v--~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (341)
                      -+.......|.-  ....+..+..|..+.. .  .++.+++..+..|.++--.+..-.....   .....+.+...+.+-
T Consensus        73 lp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r---~G~~~i~l~~~d~lv  149 (307)
T 1zi0_A           73 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT---AGKVAIKLVDGDELI  149 (307)
T ss_dssp             SCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT---TCEESSCCCTTCCEE
T ss_pred             CcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc---CCeEEEEECCCCEEE
Confidence            332211112210  1223334445555533 2  3456788899999999887642211110   000001111113344


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      .+..  ..+...++..+.+|.+..++...-..      -+..+.. ....|.++..-+++..+++.+..|.++-.++...
T Consensus       150 ~~~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~  227 (307)
T 1zi0_A          150 GVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEY  227 (307)
T ss_dssp             EEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGS
T ss_pred             EEEE--eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHh
Confidence            4444  23445677778889888887643110      1111111 2345666655455567888888888888776321


Q ss_pred             ---------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          291 ---------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       291 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                               .....+... .+.+..+....+...++..+.+|.+.-+++..
T Consensus       228 ~~~~Rg~kG~~~~~~~~~-~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          228 PTKSRATKGVISIKVTER-NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             CCCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             ccCCCCCCCEEeeEecCC-CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence                     122223222 34555554433445555666777766666543

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=93.04  E-value=3.1  Score=33.92  Aligned_cols=255  Identities=11%  Similarity=0.055  Sum_probs=123.9

Q ss_pred             eeeecCCCCeEEEEEecCc-cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEe---eCCCCcchheee
Q 019405           17 ALTFDSLGLIKVIEARGEH-GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL---NPLNGDLRVAIS   92 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw---~~~~~~~~~~~~   92 (341)
                      +++.+.+|.||...+..-. .+.  ....+.+.+.-+.....+...     .|+..+..|.+.-.   ++........=.
T Consensus         8 ~v~lT~~G~IKr~~~~~~~~~~~--~~~~lke~D~l~~~~~~~t~d-----~ll~fT~~Gr~~~~~~~elp~~~r~a~G~   80 (323)
T 1wp5_A            8 IVTVTKDGYVKRTSLRSYAASNG--QDFAMKDTDRLLAMLEMNTKD-----VLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             EEEEETTCEEEEEEHHHHHHTTT--CCCCCCTTCCEEEEEEEETTS-----EEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEEeCCCEEEEeEHHHhhhcCc--cccccCCCCEEEEEEEECCCC-----EEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence            6788999999988766331 111  111343333333322222222     46777778885554   433221100000


Q ss_pred             -ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           93 -NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                       ...... -..++.++.+...+...     .+..++.++..|.++-..+..-.....  ..-+.......+..+..+...
T Consensus        81 ~i~~~i~-L~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~~~~~  152 (323)
T 1wp5_A           81 HIANIIP-IDRDEEIIKAIPINDFE-----LNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVDVHLT  152 (323)
T ss_dssp             EGGGTSC-CCTTCCEEEEEEESCTT-----SSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEEEEEE
T ss_pred             ChhhccC-CCCCCEEEEEEEecccC-----CCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEEEEEe
Confidence             000000 12345676665554311     012688999999999888754332110  122333444444555555554


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---  248 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---  248 (341)
                      .....++..+.+|.+..++...-..... .......+.+.....|.++... .++...+++.+..|..+..++....   
T Consensus       153 ~~~~~i~l~T~~G~~irf~~~ev~~~gR-~a~GV~~i~L~~~d~Vv~~~~~-~~~~~~ll~vt~~G~gKr~~~~e~~~~~  230 (323)
T 1wp5_A          153 DGMNELFLVTHNGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTEFEKAT  230 (323)
T ss_dssp             CSCSEEEEEETTSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred             CCCCEEEEEeCCCcEEEEEHHHCcccCC-CCcCEEEEEeCCCCEEEEEEEE-cCCCcEEEEEECCCceEEEEHHHccccC
Confidence            4556777888899988888753221111 0111111112222446666553 3333268888889998888775421   


Q ss_pred             ---ceeEEEE---ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          249 ---RPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       249 ---~~~~~~~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                         .-+..++   .....+..+....++..++..+..|.+.-+.+.
T Consensus       231 Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~  276 (323)
T 1wp5_A          231 RAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             TTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             CCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence               1112221   112244433222233345556666766655554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.52  E-value=5.3  Score=35.26  Aligned_cols=72  Identities=13%  Similarity=-0.015  Sum_probs=52.1

Q ss_pred             CeEEEEEcCCCceEEEEe-CCCCEEEEECCCC------eE-------EeEEeccccCceeEEEecCCCCEEEEEeCCCcE
Q 019405          260 PIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG------KL-------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v  325 (341)
                      ....+..+|||+++++++ .+.++.++|++..      +.       ....+.  .-.-...+|.++|....|.-.|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--GLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--CSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--CCcccEEEECCCCceEeeeeecceE
Confidence            345788999999988766 5789999998731      11       222222  3355778999999666666789999


Q ss_pred             EEEEcCCC
Q 019405          326 RFWDIKTR  333 (341)
Q Consensus       326 ~iwd~~~~  333 (341)
                      .-|++...
T Consensus       402 vkWni~~a  409 (638)
T 3sbq_A          402 VKWNMEEA  409 (638)
T ss_dssp             EEEEHHHH
T ss_pred             EEEeccHH
Confidence            99998753

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=91.58  E-value=4.7  Score=32.67  Aligned_cols=210  Identities=12%  Similarity=0.110  Sum_probs=108.2

Q ss_pred             CceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           65 DPLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        65 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      .+++++.+.+|.|+--.+.+-+....- .+.... ....++.+..+...+...        .++..+..|.+.-.....-
T Consensus         8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~-~lke~D~l~~~~~~~~~~--------~ll~~T~~G~~~~~~~~~i   78 (312)
T 1suu_A            8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSF-DLNDGDEIVIALCVNTHD--------YLFMISNEGKLYLINAYEI   78 (312)
T ss_dssp             CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECC-CCCTTCCEEEEEEEETTC--------EEEEEETTSEEEEEEGGGS
T ss_pred             CCEEEEEeCCCEEEEeEHHHhhccccCCCCceec-ccCCCCEEEEEEEECCCC--------EEEEEECCCeEEEEEHHHC
Confidence            457888999999998766433221110 000000 012346666666555555        7777788888766655332


Q ss_pred             ccccccCCce--EEEEEeecCCceEEEEecC---CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          144 KVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       144 ~~~~~~~~~~--v~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      +.......|.  ........+..|..+..-+   +..+++..+..|.++.-.+..-....   ......+.+.....+-.
T Consensus        79 p~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i~L~~~d~lv~  155 (312)
T 1suu_A           79 KDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVIKLNDKDFVTS  155 (312)
T ss_dssp             CC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCEEE
T ss_pred             CCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEEecCCCCEEEE
Confidence            2110000000  0011222334444443322   45678888999999988774321110   00000011111233555


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCC----C--ceeEEEEe-cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      +..  ..+...++..+.+|.+..+....-    .  .-++.+.. ....|..+..-+++..+++.+..|..+..++.
T Consensus       156 ~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~  230 (312)
T 1suu_A          156 AEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS  230 (312)
T ss_dssp             EEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred             EEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence            544  234557788889999999887541    1  11222221 23456666554555678888889998888874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.52  E-value=8.2  Score=35.33  Aligned_cols=150  Identities=13%  Similarity=0.139  Sum_probs=80.0

Q ss_pred             CCCEEEEeeCC------CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--eEEEEEc
Q 019405          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT  244 (341)
Q Consensus       173 ~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--~i~iwd~  244 (341)
                      ++++++.||.+      +.+.+||..+.+-... .....       +..-.+++.  -.++.+++.|+.++  .+.+||.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~-~~~p~-------~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~  520 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI-KSLSH-------TRFRHSACS--LPDGNVLILGGVTEGPAMLLYNV  520 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC-CCCSB-------CCBSCEEEE--CTTSCEEEECCBCSSCSEEEEET
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC-CCCCC-------CcccceEEE--EcCCEEEEECCCCCCCCEEEEEC
Confidence            66777777753      3578889877532221 11110       011122222  23777888887654  6889998


Q ss_pred             CCCCceeEEEEe------cCCCeEEEEEcCC-CceEEEEeC--C-----CCEEEEECCCCe------EEeEEec-cccCc
Q 019405          245 SAQRRPVMSFDF------RETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGK------LLGCFIG-KCSGS  303 (341)
Q Consensus       245 ~~~~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~g~~--d-----g~i~iwd~~~~~------~~~~~~~-~~~~~  303 (341)
                      .+..  -..+..      ......++.+..+ +++++.|+.  +     +.+.+||+.+.+      ....... .....
T Consensus       521 ~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~  598 (695)
T 2zwa_A          521 TEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY  598 (695)
T ss_dssp             TTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB
T ss_pred             CCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc
Confidence            8743  222211      1112233555555 667777765  2     358999998776      2211111 10111


Q ss_pred             eeEEEecCCCCEEEEEeCC--------CcEEEEEcCCCc
Q 019405          304 IRSIARHPTLPIIASCGLD--------SYLRFWDIKTRQ  334 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~~d--------g~v~iwd~~~~~  334 (341)
                      -.+++...++.+++.|+.+        ..|.+||+.+.+
T Consensus       599 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          599 GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            1223333337777777743        468999998764

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=91.03  E-value=5.5  Score=32.49  Aligned_cols=251  Identities=9%  Similarity=0.030  Sum_probs=126.9

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchhee-eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~  144 (341)
                      +.+++-+.+|.|+--.+.+.+....- .+.... ....++.+..+...+...        .++.-+..|.+.-..+..-+
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-~~ke~D~~~~~~~~~t~d--------~ll~fT~~Gr~y~~~~~~lp   74 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-GLKQDDIVAHFFVCSTHD--------LILFFTTQGRVYRAKAYDLP   74 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------C-CCCGGGCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGSC
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-ccCCCCEEEEEEEeCCCC--------EEEEEeCCCeEEEEEHHHCc
Confidence            46888889999997654321110000 000000 001235555555555444        56666666766544433222


Q ss_pred             cccccCCce--EEEEEeecCCceEEEE-ecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEE
Q 019405          145 VSAESSCST--VKSWNVCASGTIAFSK-VDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (341)
Q Consensus       145 ~~~~~~~~~--v~~~~~~~~~~i~~~~-~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (341)
                      .......|.  ..+..+..+..|..+. +.+  +..+++..+.+|.++--.+..-.....   .....+.+.....+..+
T Consensus        75 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r---~G~~~i~lke~D~lv~~  151 (327)
T 3uc1_A           75 EASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS---GGIVAVNLRDNDELVGA  151 (327)
T ss_dssp             BCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS---SCEESCBCCTTCCEEEE
T ss_pred             CCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc---CceEEEEECCCCEEEEE
Confidence            211111111  0112233344555443 332  578899999999999887654221110   00001111112335444


Q ss_pred             EEEecCCCCEEEEEeCCCeEEEEEcC--CCC---c-----eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC
Q 019405          220 AFLSIDDHRKFVAGTNDHQVRLYDTS--AQR---R-----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~---~-----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~  289 (341)
                      ..  ......|+..+..|.+..+...  .-.   +     ....+. ....|.++...+++..++..+..|.++.-.+..
T Consensus       152 ~~--~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          152 VL--CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             EE--ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EE--ecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence            44  3345677778889998888776  311   0     011122 234577766656666888889999988887542


Q ss_pred             C---------eEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          290 G---------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       290 ~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      .         .....+... .+.+..+....+...++..+.+|.+.-++...
T Consensus       229 ~~~~~R~~~G~~~~~l~~~-~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          229 YPVQGRGGKGVLTVMYDRR-RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             SCBCCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             ccccCcCCCcEEEEEecCC-CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            2         111222221 23455554444445666667777777776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.50  E-value=11  Score=34.87  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=86.3

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .|.++.. .++ .|..++.+ .|..||..+++... +.... .  .. ....|.++..  ..++.+. .++.+ -+..++
T Consensus       104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~-~~~~~-~--~l-~~~~i~~i~~--d~~g~lW-igt~~-Gl~~~~  171 (758)
T 3ott_A          104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS-FDTRR-N--GL-PNNTIYSIIR--TKDNQIY-VGTYN-GLCRYI  171 (758)
T ss_dssp             CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE-ECHHH-H--CC-SCSCEEEEEE--CTTCCEE-EEETT-EEEEEE
T ss_pred             eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE-eccCC-C--Cc-CCCeEEEEEE--cCCCCEE-EEeCC-CHhhCc
Confidence            4555544 344 45555655 68889987654332 21000 0  00 0134777766  5566544 45554 577888


Q ss_pred             cCCCCceeEEEEec------CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          244 TSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       244 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      ..+.+  ...+...      ...|.++...+++..|..|+. +-+..+|..+++........ ...|.++...++|.+.+
T Consensus       172 ~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi  247 (758)
T 3ott_A          172 PSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDLLA  247 (758)
T ss_dssp             TTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCEEE
T ss_pred             cCCCc--eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCEEE
Confidence            76533  2222211      124788888777665555554 45888998877543221112 45688888888887665


Q ss_pred             EEeCCCcEEEEEcCCCc
Q 019405          318 SCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~  334 (341)
                      .. .+ -+.+++..+++
T Consensus       248 gT-~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          248 GT-DN-GLYVYHNDTTP  262 (758)
T ss_dssp             EE-TT-EEEEECCTTSC
T ss_pred             Ee-CC-ceeEEecCCCc
Confidence            44 44 57788876654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.31  E-value=6.6  Score=32.19  Aligned_cols=58  Identities=7%  Similarity=-0.027  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCc-eeEEEEecCCCeEEEEEcCCCceEEEEeCCC------CEEEEECCCCeEEeEEe
Q 019405          238 QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG------DLASVDIRTGKLLGCFI  297 (341)
Q Consensus       238 ~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~  297 (341)
                      .+.+||+.+.+= .+..+......-.++  ..++++++.|+.++      .|.++++++++.+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            477889876431 121111111111222  23677788888653      36666888776654433

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.92  E-value=3.2  Score=39.58  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35777888888899999999999999999999998764

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.51  E-value=7.6  Score=31.68  Aligned_cols=282  Identities=10%  Similarity=0.047  Sum_probs=133.8

Q ss_pred             eeeeecCCCCeEEEEEecCc------cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEE---eeCCCC-
Q 019405           16 RALTFDSLGLIKVIEARGEH------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI---LNPLNG-   85 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~i---w~~~~~-   85 (341)
                      -.++.+.+|.||...+..-.      .|..  ...+.+.+.-......+...     .|+.-+..|.++-   |++... 
T Consensus         5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~--~~~~ke~D~~~~~~~~~t~d-----~ll~fT~~Gr~y~~~~~~lp~~~   77 (327)
T 3uc1_A            5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQ--GAGLKQDDIVAHFFVCSTHD-----LILFFTTQGRVYRAKAYDLPEAS   77 (327)
T ss_dssp             EEEEEETTSEEEEEEHHHHHHHC----------CCCCGGGCEEEEEEEETTS-----EEEEEETTSEEEEEEGGGSCBCC
T ss_pred             EEEEEeCCCEEEEeeHHHhhhcccCCCCcc--ccccCCCCEEEEEEEeCCCC-----EEEEEeCCCeEEEEEHHHCcCCC
Confidence            36788899999987654310      1211  11333322222222222222     3555555776544   444432 


Q ss_pred             -----cchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee
Q 019405           86 -----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (341)
Q Consensus        86 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~  160 (341)
                           ..+..+-..      ..+..++.+...+...     ....++..+.+|.++-..+.......  . .-+......
T Consensus        78 r~~~G~~i~~~l~l------~~~e~i~~~~~~~~~~-----~e~~~v~~T~~G~iKr~~l~~~~~~~--r-~G~~~i~lk  143 (327)
T 3uc1_A           78 RTARGQHVANLLAF------QPEERIAQVIQIRGYT-----DAPYLVLATRNGLVKKSKLTDFDSNR--S-GGIVAVNLR  143 (327)
T ss_dssp             SSSCCEEHHHHTTC------CTTCCEEEEEEESSTT-----SSSEEEEEETTSEEEEEEGGGGCCCC--S-SCEESCBCC
T ss_pred             ccCCCEEHHHccCC------CCCCEEEEEEEeccCC-----CCCEEEEEcCCCEEEEeEHHHhhccc--c-CceEEEEEC
Confidence                 111111111      2346677766655311     01289999999999988765433111  1 122333333


Q ss_pred             cCCceEEEEecCCCCEEEEeeCCCeEEEEECC--CCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCe
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  238 (341)
                      .+..+..+........++..+..|.+..+...  .-.....- ......+.+.....|.++..  -+++..++..+..|.
T Consensus       144 e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~-a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~  220 (327)
T 3uc1_A          144 DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA-TSGVQGMRFNIDDRLLSLNV--VREGTYLLVATSGGY  220 (327)
T ss_dssp             TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT-SBCEESSCCCTTCCEEEEEE--CCTTCEEEEEETTSE
T ss_pred             CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC-CCCeeeecCCCCCEEEEEEE--ECCCCEEEEEeCCCc
Confidence            44455555544455677778888998888776  32111000 00000111222344666655  345568888899999


Q ss_pred             EEEEEcCCCC------ceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC---------eEEeEEecccc
Q 019405          239 VRLYDTSAQR------RPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG---------KLLGCFIGKCS  301 (341)
Q Consensus       239 i~iwd~~~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~~~~  301 (341)
                      ++.-.+....      .-+..+..  ....+..+....+...++..+.+|.+.-++...-         -....+..  .
T Consensus       221 ~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~--~  298 (327)
T 3uc1_A          221 AKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGE--G  298 (327)
T ss_dssp             EEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCT--T
T ss_pred             EEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCC--C
Confidence            9988765422      11222221  1334555444444456666677777777765421         11112221  3


Q ss_pred             CceeEEEecCC-CCEEEEEeCCC
Q 019405          302 GSIRSIARHPT-LPIIASCGLDS  323 (341)
Q Consensus       302 ~~i~~~~~~~~-~~~l~s~~~dg  323 (341)
                      ..|.++...+. ...+++.+.+|
T Consensus       299 d~vv~~~~~~~~~~~~~~~~~~g  321 (327)
T 3uc1_A          299 DTLLAIARNAEESGDDNAVDANG  321 (327)
T ss_dssp             CCEEEEEECC-------------
T ss_pred             CEEEEEEEcCCCcceEEEEecCC
Confidence            45666655443 34455555554

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.14  E-value=7.7  Score=31.29  Aligned_cols=255  Identities=10%  Similarity=0.052  Sum_probs=118.1

Q ss_pred             eeeecCCCCeEEEEEecCc----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee---CCCCcchh
Q 019405           17 ALTFDSLGLIKVIEARGEH----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN---PLNGDLRV   89 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~---~~~~~~~~   89 (341)
                      ++..+.+|.||...+..-.    .+.-.....+.+.+.-+.....+...     .|+..+..|.+.-..   +.......
T Consensus         6 ~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~-----~ll~fT~~G~~~~~~~~elp~~~~~a   80 (307)
T 1zi0_A            6 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHD-----HILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             EEEEETTSEEEEEECC--------------------CCEEEEEEEETTC-----EEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             EEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCC-----EEEEEECCCEEEEEEhhHCcCCCCCC
Confidence            6788999999887765420    00001111333333333322222222     477777788855544   33221100


Q ss_pred             e-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           90 A-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      . ........ -..++.++.+.......     .+..++..+..|.++-..+..-....  . .-+.......+..+..+
T Consensus        81 ~G~~i~~~l~-l~~~e~i~~~~~~~~~~-----~~~~ll~~T~~G~~Krt~l~e~~~~~--r-~G~~~i~l~~~d~lv~~  151 (307)
T 1zi0_A           81 RGRPIVNLLP-LEQDERITAILPVTEFE-----EGVKVFMATANGTVKKTVLTEFNRLR--T-AGKVAIKLVDGDELIGV  151 (307)
T ss_dssp             CCEEGGGTSC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGTTCC--T-TCEESSCCCTTCCEEEE
T ss_pred             CCeEhhhccC-CCCCCEEEEEEEeccCC-----CCcEEEEEeCCCeEEEEEHHHhhccc--c-CCeEEEEECCCCEEEEE
Confidence            0 00000000 12345676665543111     01168899999999988775332211  1 12233333334455554


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      ....+...++..+.+|.+..++...-..... .......+.+.....|.++..  -.++..+++.+..|.++-.++....
T Consensus       152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr-~a~Gv~~i~L~~~d~Vv~~~~--~~~~~~ll~~T~~G~~Kr~~~~e~~  228 (307)
T 1zi0_A          152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGC-NTTGVRGIRLGEGDKVVSLIV--PRGDGAILTATQNGYGKRTAVAEYP  228 (307)
T ss_dssp             EEECTTCEEEEEETTSEEEEEEGGGSCBCCT-TCCCEECCCCCTTCCEEEEEC--CCSSCEEEEEETTSEEEEECGGGSC
T ss_pred             EEeCCCCEEEEECCCCcEEEEEHHHcCccCC-CCCCeEeEEeCCCCEEEEEEE--ecCCCEEEEEEcCCceEEEEHHHhc
Confidence            4444455677788888888887653211100 000001111222244655554  3345578888999999988774321


Q ss_pred             ---c---eeE--EEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          249 ---R---PVM--SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       249 ---~---~~~--~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                         +   -+.  .+....+.+..+....+...++..+.+|.+.-+++.
T Consensus       229 ~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~  276 (307)
T 1zi0_A          229 TKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS  276 (307)
T ss_dssp             CCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred             cCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence               1   011  122222444444332333445555666666555554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.90  E-value=6.5  Score=34.70  Aligned_cols=102  Identities=4%  Similarity=-0.135  Sum_probs=63.8

Q ss_pred             eeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCC-----------ce-eEEEEecCCCeEEEEEcCCCceEEEEeCCC
Q 019405          214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQR-----------RP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (341)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~-----------~~-~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg  280 (341)
                      .....+..  +|+|++++.++ .+.++.++|++...           .. +..... ...-.-.+|.++|....+-.-|.
T Consensus       323 ksPHGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCCcceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecc
Confidence            33455666  89999988765 47889999988421           10 111121 22345688999995555666899


Q ss_pred             CEEEEECCCC----------eEEeEEeccccCceeEEEe------cCCCCEEEEEe
Q 019405          281 DLASVDIRTG----------KLLGCFIGKCSGSIRSIAR------HPTLPIIASCG  320 (341)
Q Consensus       281 ~i~iwd~~~~----------~~~~~~~~~~~~~i~~~~~------~~~~~~l~s~~  320 (341)
                      .|.-|++...          ..+.++..| -. +-.+.-      .|+|++|++..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~-Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECS-SC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccc-cC-CcccccCCCccCCCCccEEEEec
Confidence            9999998753          355566554 22 222222      46777777764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.70  E-value=2.3  Score=37.93  Aligned_cols=58  Identities=12%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             EEEEEcCCCceEEEEeCC------------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          262 KAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       262 ~~~~~~~~~~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      -.|+|+|.|.+++.-..+            +.+.+.+..+++....+.++....++.++|+||++.|+..
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            468999999877664432            2366667778888777777767899999999999977655

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.58  E-value=13  Score=32.04  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=59.9

Q ss_pred             eeEEEEEecCCCC-EEEEEeCCCeEEEEEcCCCC--ceeEEEE---------ecCCCeEEEEEcCC---CceEEEE-eC-
Q 019405          216 FTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR--RPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG-  278 (341)
Q Consensus       216 v~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~--~~~~~~~---------~~~~~v~~~~~~~~---~~~l~~g-~~-  278 (341)
                      ...++|  .|++. .|+++...|.|++++.....  .++..+.         ..+.....|+|+|+   ..+|++. +. 
T Consensus        16 P~~~a~--~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           16 PVGALH--SGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEEEEC--CSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             ceEEEE--CCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            567888  77885 45666789999999754321  1222221         01356788999996   2234333 21 


Q ss_pred             -C----------CCEEEEECCC----------CeEEeEEe-ccccCceeEEEecCCCCEEEEEeCCC
Q 019405          279 -S----------GDLASVDIRT----------GKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDS  323 (341)
Q Consensus       279 -d----------g~i~iwd~~~----------~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg  323 (341)
                       +          ..|.-|.+..          .+.+..+. ......-..|+|.|||.+.++.+..+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          1344455432          23344433 11123467899999999777766543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.36  E-value=11  Score=31.00  Aligned_cols=249  Identities=14%  Similarity=0.103  Sum_probs=115.4

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeec---cccccccccceeEE
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR---QREESSSRSRTLLT  128 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~  128 (341)
                      -..++|.+++.    ++++-...|.|++++..+++.. .+... +..+.........+++.+.   +.        .|..
T Consensus        34 P~~ia~~pdG~----llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g--------~lYv   99 (347)
T 3das_A           34 PWGLAPLPGGD----LLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDH--------MVYA   99 (347)
T ss_dssp             EEEEEECTTSC----EEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHC--------EEEE
T ss_pred             ceEEEEcCCCc----EEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCC--------EEEE
Confidence            34677777765    5555544899999987655432 22211 1111123455667776543   22        3333


Q ss_pred             E-c--ccceeEEEEeeecccccccCCceEEEEE-ee--cCCceEEEEecCCCCEEEEeeC-------------CCeEEEE
Q 019405          129 C-T--TKGKASMRSIEVTKVSAESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK-------------GVEVNVW  189 (341)
Q Consensus       129 ~-~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~i~  189 (341)
                      . +  .++.+.-+.+.............-.++. ..  ....-..|.|.|||.+.++.+.             .|.|.-.
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            2 2  2333333333221100000011122222 11  1123456899999987777543             2344444


Q ss_pred             ECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCC-----------------Ccee
Q 019405          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------------RRPV  251 (341)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~-----------------~~~~  251 (341)
                      +... +.-..-.......+...+.+ ...++|  +|++.+.++-. .|+.=.|--+..+                 ..|+
T Consensus       180 ~~dG-~ip~~nPf~~~~i~a~G~RN-p~Gla~--dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          180 TPDG-EPAPGNPFPGSPVYSYGHRN-VQGLAW--DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             CTTS-SBCTTCSSTTCCEEEBCCSB-CCEEEE--CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred             eCCC-CccCCCCCCCCeEEeeCCCC-cceEEE--CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence            4331 10000000000111111222 457788  77776655432 2221122212221                 1234


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE----EeEEeccccCceeEEEecCCCCEEEEEe
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ..+..+......++|. ++.++...-..+.|....+.....    ...+.+. ...+..++..|||.++++.+
T Consensus       256 ~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          256 AQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred             EecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence            4443332355677776 455666656666777777665432    2223332 46899999999998666543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.49  E-value=11  Score=29.92  Aligned_cols=206  Identities=9%  Similarity=-0.018  Sum_probs=116.3

Q ss_pred             CCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC-CCCEEEEee
Q 019405          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG  181 (341)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~-~~~~l~~~~  181 (341)
                      ++.+..+...+...        .++.-+..|.+.-..+..-+...  ..+    . +..+..|..+.... +..+++..+
T Consensus        23 gD~~~~~~~~~t~~--------~ll~fT~~G~v~~~~~~~lp~~~--~~~----l-l~~~e~i~~v~~~~~~~~~~v~~T   87 (276)
T 3no0_A           23 KAPVVNILRVPFTE--------GLFLVSNRGRVYWIAGSQALQGS--KVS----L-KSREEKIVGAFIREKFGNRLLLAT   87 (276)
T ss_dssp             CCCEEEEEEEETTS--------CEEEEETTSEEEEECSHHHHTSE--ECC----C-SSTTCCEEEEEEGGGSCSEEEEEE
T ss_pred             CCeEEEEEEECCCC--------EEEEEcCCCeEEEEEhhhCccCc--ccc----c-CCCCCEEEEEECCcCCCCEEEEEe
Confidence            36676666666555        67777777777654433222221  111    2 44556666664422 467899999


Q ss_pred             CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------c--eeEE
Q 019405          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------R--PVMS  253 (341)
Q Consensus       182 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~--~~~~  253 (341)
                      .+|.++-..+..-. ..   ......+.+.....+..+..  ......++..+.+|.+..+....-.      .  +...
T Consensus        88 ~~G~iKr~~l~~~~-~~---~~G~~~i~lkegD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~  161 (276)
T 3no0_A           88 KKGYVKKIPLAEFE-YK---AQGMPIIKLTEGDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK  161 (276)
T ss_dssp             TTSEEEEEEGGGTT-TC---STTEECSCCCTTCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC
T ss_pred             CCCEEEEEEHHHhh-hh---cCCeEEEecCCCCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc
Confidence            99999998875432 11   00111111212234555555  3455678888899998888754311      0  1111


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC-------CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEE
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-------GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~  326 (341)
                      +. ....|..+...+++..++..+..|.++...+..       ++-+..+. . .+.+..+....+...++..+.+|.+.
T Consensus       162 L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~-~~~lv~~~~~~~~~~i~~~t~~G~~i  238 (276)
T 3no0_A          162 LE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-T-KDTLVDLIPIKEEVELLITTKNGKAF  238 (276)
T ss_dssp             CC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-S-SSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred             cC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-C-CCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence            22 234566665555566888889999998887642       22222232 2 34555554433444666677788877


Q ss_pred             E--EEcCC
Q 019405          327 F--WDIKT  332 (341)
Q Consensus       327 i--wd~~~  332 (341)
                      .  +++..
T Consensus       239 r~~~~~~~  246 (276)
T 3no0_A          239 YDKINQKD  246 (276)
T ss_dssp             EEEEEGGG
T ss_pred             EeeeCHHH
Confidence            7  77654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.30  E-value=3.2  Score=40.51  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             CceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       302 ~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            35666777788899999999999999999999998863

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=85.69  E-value=13  Score=30.21  Aligned_cols=251  Identities=11%  Similarity=0.076  Sum_probs=126.1

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      +.+++++.+.+|.|+--.+.+-+....    ... ....++.+..+...+...        .++..+..|.+.-..+..-
T Consensus         4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~----~~~-~lke~D~l~~~~~~~t~d--------~ll~fT~~Gr~~~~~~~el   70 (323)
T 1wp5_A            4 SEDVIVTVTKDGYVKRTSLRSYAASNG----QDF-AMKDTDRLLAMLEMNTKD--------VLLLFTNKGNYLYCPVHEL   70 (323)
T ss_dssp             CCEEEEEEETTCEEEEEEHHHHHHTTT----CCC-CCCTTCCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGS
T ss_pred             CCcEEEEEeCCCEEEEeEHHHhhhcCc----ccc-ccCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEHHHC
Confidence            345788899999999765432111000    000 112446676666655555        7777777787665554332


Q ss_pred             ccccccCCce--EEEEEeecCCceEEE-EecC--CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          144 KVSAESSCST--VKSWNVCASGTIAFS-KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       144 ~~~~~~~~~~--v~~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      +.......|.  ....++..+..|..+ .+.+  ++.+++..+.+|.++--.+..-.....  ......+.+.....+-.
T Consensus        71 p~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r--~~G~~ai~l~e~d~lv~  148 (323)
T 1wp5_A           71 PDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY--SKPLTGINLKNDDQVVD  148 (323)
T ss_dssp             CBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC--SSCEECSCCCTTCCEEE
T ss_pred             cCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc--cCceEEEEeCCCCEEEE
Confidence            2221111111  011223334455544 3332  256788899999999887753211110  00000011111133444


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe-cCCCeEEEEEcCCCc-eEEEEeCCCCEEEEECCC-
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF-RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT-  289 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~-  289 (341)
                      +..  ......++..+.+|.+..+....-.      .-++.+.. ....|.++..-+++. .|++.+..|..+..++.. 
T Consensus       149 ~~~--~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~  226 (323)
T 1wp5_A          149 VHL--TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF  226 (323)
T ss_dssp             EEE--ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             EEE--eCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence            444  2345567788889998888765311      11222221 234566664434444 677778888887777643 


Q ss_pred             ------CeEEeE---EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          290 ------GKLLGC---FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       290 ------~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                            ++-+..   ++.. ...+..+....+...++..+..|.+....+..
T Consensus       227 ~~~~Rg~kGv~~~~~~~~~-~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          227 EKATRAKRGVVILRELKAN-PHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCCCTTSCCEECSCCCSSS-CCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             cccCCCCCCEECeeecCCC-CceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence                  111111   2221 22454433333344555666777766666543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.83  E-value=27  Score=32.21  Aligned_cols=162  Identities=12%  Similarity=0.087  Sum_probs=91.6

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCc--eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~  240 (341)
                      ..|.++..+.++.+.+ |+.+ -+..++..+++  ....+..... ...+ ....|.++.-  ..++. |..|+ ++-+.
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~v~~i~~--d~~g~-lWigt-~~GL~  395 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDK-TYPL-SHNRIRHIYE--DKEQQ-LWIAT-DGSIN  395 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCS-SSCC-SCSCEEEEEE--CTTSC-EEEEE-TTEEE
T ss_pred             ceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCc-CCCC-CCCceEEEEE--CCCCC-EEEEe-CCcHh
Confidence            4578888887777655 4444 46677765432  1111111100 0001 1234777776  66664 45555 45789


Q ss_pred             EEEcCCCCceeEEEEe-------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC------CeEE--eEEec---cccC
Q 019405          241 LYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLL--GCFIG---KCSG  302 (341)
Q Consensus       241 iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~~--~~~~~---~~~~  302 (341)
                      .||..+++  ...+..       ....|.++...+++. |-.|+..+-|.++|..+      ....  ..+..   -...
T Consensus       396 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  472 (758)
T 3ott_A          396 RYDYATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM  472 (758)
T ss_dssp             EEETTTTE--EEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred             hcCcCCCc--EEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence            99987643  333321       123578888777775 44566666788888653      1111  11111   1123


Q ss_pred             ceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      .|.++...++|.+.+.++..+-|..+|.++++.
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~  505 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREV  505 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence            588999988998776434445588889877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.27  E-value=36  Score=33.28  Aligned_cols=37  Identities=11%  Similarity=-0.024  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEe
Q 019405          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (341)
Q Consensus       261 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  297 (341)
                      +.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            3455566777899999999999999999999887753

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=83.12  E-value=17  Score=29.38  Aligned_cols=214  Identities=10%  Similarity=0.027  Sum_probs=109.2

Q ss_pred             eeeeecCCCCeEEEEEecCcc----CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh-e
Q 019405           16 RALTFDSLGLIKVIEARGEHG----GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-A   90 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~   90 (341)
                      .++..+.+|.+|...+..-..    +.-.....+.+.+.-+.....+.  +   +.++..+..|.++-.....-.... .
T Consensus        10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~--~---~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A           10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT--H---DYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET--T---CEEEEEETTSEEEEEEGGGSCC----
T ss_pred             EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC--C---CEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            377889999999887765310    00011113433333333222222  2   147777788887666543210000 0


Q ss_pred             eecc---CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405           91 ISNA---GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (341)
Q Consensus        91 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~  167 (341)
                      -.+.   .... -..++.+..+...+...     ....++..+..|.++...+..-+...  .. -+....+..+..+..
T Consensus        85 ~~G~~i~~~l~-l~~~e~i~~~~~~~~~~-----~~~~ll~~T~~G~~kr~~l~~~~~~r--~~-G~~~i~L~~~d~lv~  155 (312)
T 1suu_A           85 SKGQNISELIN-LGDQEEILTIKNSKDLT-----DDAYLLLTTASGKIARFESTDFKAVK--SR-GVIVIKLNDKDFVTS  155 (312)
T ss_dssp             ---CBGGGTSC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCEEE
T ss_pred             CCCcChhhccC-CCCCCEEEEEEEeccCC-----CCCEEEEEeCCCeEEEEEHHHhhccC--CC-cEEEEecCCCCEEEE
Confidence            0000   0001 12345666665543210     01178888999999888875443221  11 233445555556666


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +....+...++..+.+|.+..+....-..... .......+.+.....+..+..  -.++..+++.+..|..+..++..
T Consensus       156 ~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR-~~~Gv~~i~L~~~d~vv~~~~--v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          156 AEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR-GTQGVCGMKLKEGDLFVKVLS--VKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-TBCCEECCCCCTTCCEEEEEE--CTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEeCCCCEEEEEeCCCcEEEEEHHHccccCC-CCCCeEeEEeCCCCEEEEEEE--ECCCCeEEEEECCCceEEEEHHH
Confidence            65555556788889999999888754211100 000001111111234555554  33456788888999999988764

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=82.19  E-value=21  Score=29.72  Aligned_cols=164  Identities=9%  Similarity=-0.026  Sum_probs=84.1

Q ss_pred             eeeeecCCCCeEEEEEecCc----cCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEee---CCCCcch
Q 019405           16 RALTFDSLGLIKVIEARGEH----GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN---PLNGDLR   88 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~---~~~~~~~   88 (341)
                      .+++.+.+|.||...+..-.    .|.-.....+.+.+. +..+..+. .+   +.|+..+..|.+.-+.   +......
T Consensus         9 ~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~-l~~~~~~~-t~---d~ll~fT~~G~~~~~~~~eip~~~r~   83 (370)
T 3l6v_A            9 VVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDF-IDQLWLVN-TH---DTLLTFTSSGKVFWLPVHQLPEAGSN   83 (370)
T ss_dssp             EEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCC-EEEEEEEC-TT---CEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred             EEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCE-EEEEEEec-CC---CEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence            47788999999987665420    010112224544332 22222222 22   2466666778765544   3322110


Q ss_pred             he-eeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEE
Q 019405           89 VA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (341)
Q Consensus        89 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~  167 (341)
                      .. .....-.. -..++.++.+.......     .+..++.++..|.++...+.......  . .-+....+..+..+..
T Consensus        84 a~G~~i~~ll~-L~~~e~Iv~~~~~~~~~-----~~~~ll~~T~~G~vKrt~l~e~~~~~--~-~G~~ai~L~~~d~lv~  154 (370)
T 3l6v_A           84 ARGRPIINWIP-LESGERVQAVLPVREYA-----DNRYVFMATRNGTVKKTPLSEFAFRL--A-RGKIAINLDEGDALVG  154 (370)
T ss_dssp             SCCEEGGGSCC-CCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCSCC--T-TCEESSCCCTTCCEEE
T ss_pred             cCCcCHhhccC-CCCCCEEEEEEEeccCC-----CCcEEEEEeCCCeEEEeEHHHhhccc--C-CceEEEEeCCCCEEEE
Confidence            00 00000000 02346777766554211     11289999999999988875543221  1 2233334444455555


Q ss_pred             EEecCCCCEEEEeeCCCeEEEEECCC
Q 019405          168 SKVDISEKFSLFGGKGVEVNVWDLDK  193 (341)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~v~i~d~~~  193 (341)
                      +........++..+.+|.+..++...
T Consensus       155 v~~~~~~~~i~l~T~~G~~irf~~~~  180 (370)
T 3l6v_A          155 VALTDGDRDVLLFASNGKTVRFGEST  180 (370)
T ss_dssp             EEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred             EEEeCCCceEEEEeCCCeEEEEEccc
Confidence            55544556777788888888887643

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=82.18  E-value=8.6  Score=34.00  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=43.2

Q ss_pred             CeEEEEEcCCCceEEEEeC------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          260 PIKAVAEEPDSFNIYIGNG------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       260 ~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      ....|.|.++|.+.+....            .+.+..++..+++....+.+.....++.++|+||++.|..+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            3457999999987774322            12577778888887666655434679999999999977665

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=81.70  E-value=24  Score=30.24  Aligned_cols=68  Identities=6%  Similarity=-0.010  Sum_probs=39.6

Q ss_pred             CceEEEEeCCCCEEEEECCC-Ce-EE---eEEeccccCceeEEEecCCCC-EEEEEeCCCcEE------EEEcCCCceee
Q 019405          270 SFNIYIGNGSGDLASVDIRT-GK-LL---GCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLR------FWDIKTRQLLS  337 (341)
Q Consensus       270 ~~~l~~g~~dg~i~iwd~~~-~~-~~---~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~------iwd~~~~~~~~  337 (341)
                      +.+++..-..+.|....+.. +. ..   ..+... ...+..|++.|||. ++++.+..|.+.      +|.+.....+.
T Consensus       369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~-~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~  447 (454)
T 1cru_A          369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKS-NNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLI  447 (454)
T ss_dssp             TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCC-SSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEE
T ss_pred             CcEEEeecCCCEEEEEEECCCCCeeeeeeeeeccc-CCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceE
Confidence            33444444556677776653 32 11   122222 35899999999997 666666566654      66665544444


Q ss_pred             e
Q 019405          338 A  338 (341)
Q Consensus       338 ~  338 (341)
                      +
T Consensus       448 ~  448 (454)
T 1cru_A          448 K  448 (454)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=80.27  E-value=24  Score=29.30  Aligned_cols=247  Identities=12%  Similarity=0.051  Sum_probs=122.9

Q ss_pred             CCCceEEEEccCCeEEEeeCCCCc-------chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccccee
Q 019405           63 QNDPLLAVARKNGLTDILNPLNGD-------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (341)
Q Consensus        63 ~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  135 (341)
                      |+.+++++.+.+|.|+--.+.+.+       -...+..       ..++.+..+...+.+.        .++..+..|.+
T Consensus         5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-------ke~D~l~~~~~~~t~d--------~ll~fT~~G~~   69 (370)
T 3l6v_A            5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-------KEEDFIDQLWLVNTHD--------TLLTFTSSGKV   69 (370)
T ss_dssp             CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-------SCCCCEEEEEEECTTC--------EEEEEETTSEE
T ss_pred             cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-------CCCCEEEEEEEecCCC--------EEEEEeCCCeE
Confidence            445589999999999976543211       1111111       2346666666555554        67767777776


Q ss_pred             EEEEeeecccccccCCce--EEEEEeecCCceEEEEe-c--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc
Q 019405          136 SMRSIEVTKVSAESSCST--VKSWNVCASGTIAFSKV-D--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (341)
Q Consensus       136 ~i~~~~~~~~~~~~~~~~--v~~~~~~~~~~i~~~~~-~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~  210 (341)
                      .-+.+..-+.......|.  +.+..+..+..|..+.. .  .++.+++.++..|.++.-.+.......   ......+.+
T Consensus        70 ~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~---~~G~~ai~L  146 (370)
T 3l6v_A           70 FWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL---ARGKIAINL  146 (370)
T ss_dssp             EEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC---TTCEESSCC
T ss_pred             EEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc---CCceEEEEe
Confidence            655543322211111111  11223334455555433 2  245689999999999988765322110   000001111


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe-cCCCeEEEEEcC---------------
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF-RETPIKAVAEEP---------------  268 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~-~~~~v~~~~~~~---------------  268 (341)
                      .....+-.+..  ......++..+.+|.+..+....-.      .-++.+.. ....|.++...+               
T Consensus       147 ~~~d~lv~v~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~  224 (370)
T 3l6v_A          147 DEGDALVGVAL--TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAE  224 (370)
T ss_dssp             CTTCCEEEEEE--ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------
T ss_pred             CCCCEEEEEEE--eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccc
Confidence            11233444444  2344567777888888888754311      00111111 223454444333               


Q ss_pred             --------------------CCceEEEEeCCCCEEEEECCCC-------e--EEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          269 --------------------DSFNIYIGNGSGDLASVDIRTG-------K--LLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       269 --------------------~~~~l~~g~~dg~i~iwd~~~~-------~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                                          ++..+++.+..|..+...+...       +  ....+... .+.+..+.+..+...++..
T Consensus       225 ~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~-~g~lv~~~~v~~~d~i~li  303 (370)
T 3l6v_A          225 EVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER-NGKLVRAVLLGSTDEVMLI  303 (370)
T ss_dssp             ----------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT-TCSEEEEEEECTTCEEEEE
T ss_pred             ccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC-CCcEEEEEEeCCCceEEEE
Confidence                                3457888888898888876421       1  11222222 3345554443444445555


Q ss_pred             eCCCcEEEEEc
Q 019405          320 GLDSYLRFWDI  330 (341)
Q Consensus       320 ~~dg~v~iwd~  330 (341)
                      +..|.+.-..+
T Consensus       304 T~~G~~iR~~v  314 (370)
T 3l6v_A          304 SDGGTLVRTRG  314 (370)
T ss_dssp             ETTCCEEEEEG
T ss_pred             cCCCeEEEeeH
Confidence            56665554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 2e-11
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 13/145 (8%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDT 244
             +WD+ +     T                  +  F    +   F  G++D   RL    
Sbjct: 208 AKLWDVREGMCRQTFTGHES---------DINAICFFP--NGNAFATGSDDATCRLFDLR 256

Query: 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304
           + Q     S D     I +V+       +  G    +    D       G   G     +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRV 315

Query: 305 RSIARHPTLPIIASCGLDSYLRFWD 329
             +        +A+   DS+L+ W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA-SV 285
            R FV+G  D   +L+D   +     +F   E+ I A+   P+      G+         
Sbjct: 196 TRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
                +L+          I S++   +  ++ +   D     WD       
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 9e-11
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247
             +L +   +         S          S    S       ++G+ D  ++++D S  
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-T 236

Query: 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307
              +M+    +  ++ V        I        L   D +  + +          + S+
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSL 295

Query: 308 ARHPTLPIIASCGLDSYLRFWD 329
             H T P + +  +D  ++ W+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 31/173 (17%), Positives = 50/173 (28%), Gaps = 22/173 (12%)

Query: 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242
           G  +     DK  K+W  +             W          D     + +ND  VR++
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ--DGTLIASCSNDQTVRVW 170

Query: 243 DT---------SAQRRPVMSFDFRE----------TPIKAVAEEPDSFNIYIGNGSGDLA 283
                         R  V    +            T  +          +  G+    + 
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

Query: 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
             D+ TG  L   +G     +R +  H     I SC  D  LR WD K ++ +
Sbjct: 231 MWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
              +  +  HP   ++ S   D+ ++ WD +T    
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE 52

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255
           K W  +PP K +L     +  T   F         V+ + D  ++++D         +  
Sbjct: 1   KEWIPRPPEKYALSGHR-SPVTRVIFHP--VFSVMVSASEDATIKVWDYE-TGDFERTLK 56

Query: 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315
                ++ ++ +     +   +    +   D +  + +    G    ++ S++  P    
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDH 115

Query: 316 IASCGLDSYLRFWDIKTRQ 334
           I S   D  ++ W+++T  
Sbjct: 116 IVSASRDKTIKMWEVQTGY 134

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           G     V VWD +    +       ++  G        S  F    D +  V+G+ D  V
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTG--HKDSVYSVVFTR--DGQSVVSGSLDRSV 278

Query: 240 RLYDTSAQRRP-----------VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
           +L++                   +++   +  + +VA   +   I  G+    +   D +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 289 TGKLLGCFIGKCSGSIRSIAR------HPTLPIIASCGLDSYLRFWDIK 331
           +G  L    G    S+ S+A        P   + A+   D   R W  K
Sbjct: 339 SGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 17/165 (10%)

Query: 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248
                   +              +     +   +S  D +   AG+ D  VR++D+    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 249 R------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS- 301
                     S    +  + +V    D  ++  G+    +   +++            S 
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 302 ----------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
                       + S+A       I S   D  + FWD K+   L
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242
           G+ V    LD   ++W  +            +  +             V+G  D  V+++
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIW 242

Query: 243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI----G 298
           D    +         +        + +   +   +  G +   D++TG+ +   +    G
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 299 KCSGSIRSIARHPTLPIIASCGLD----SYLRFWD 329
              G +  I    T  + A    +    + L   D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 22/150 (14%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + VW+   CE + T         G                  R  V+G++D+ +RL+D  
Sbjct: 160 IKVWNTSTCEFVRTLN-------GHKRGIACLQY------RDRLVVSGSSDNTIRLWDIE 206

Query: 246 AQRR------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
                                 K +        I + +    L          L   +  
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWD 329
            SG +  +        I S   D  +  WD
Sbjct: 267 -SGRVFRLQFDEFQ--IVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 2/79 (2%)

Query: 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311
                 E+ + ++                 L +     G  +     K S S+ S     
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISV 316

Query: 312 TLPIIASCGLDSYLRFWDI 330
               I +   D     +++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 12/169 (7%), Positives = 34/169 (20%), Gaps = 11/169 (6%)

Query: 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----IDDHRKF 230
           K   +          D       +     P        P        +      +     
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI--PLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
           +         +       R ++  +              +         G L   D++T 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           K+          ++  +        +     D  +  + ++  +    V
Sbjct: 309 KVTEV-----KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 8/66 (12%), Positives = 20/66 (30%)

Query: 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324
              PD   I   +    +   ++ T K+            + +    T   + S   + +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 325 LRFWDI 330
           + F + 
Sbjct: 305 INFVNP 310

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 15/157 (9%)

Query: 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248
           W + +  + W     P++      P             +   V   +  Q+ L D    +
Sbjct: 2   WGMPEMRESWKVLVKPEDR-----PKK---QLNDLDLPNLFSVTLRDAGQIALVDG-DSK 52

Query: 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308
           + V   D                 + +      +  +D+   +       K     RS+ 
Sbjct: 53  KIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111

Query: 309 RHPTL-----PIIASCGLDSYLRFWDIKTRQLLSAVC 340
                       IA           D +T +    V 
Sbjct: 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS 148

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/112 (9%), Positives = 33/112 (29%), Gaps = 1/112 (0%)

Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
           +    + G +D  +R+YD+   ++ ++     +  + A+        +            
Sbjct: 22  EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS 337
             +            +     I  +  +  I +   D+ L  W +     + 
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIAS 318
           PI   A   D   I I   + ++   +    K +     K  +G +  +   P    I +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 319 CGLDSYLRFWD 329
           CG D     W 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256
           +  A      +          +  F++       VA  +D    L+   +    +     
Sbjct: 227 LADADKKMAVATLASETLPLLAVTFIT---ESSLVAAGHDCFPVLFTYDSAAGKLSFGGR 283

Query: 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP----T 312
            + P ++      +   +    + D  +    +             S+  I+        
Sbjct: 284 LDVPKQSSQRGLTARERF---QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 313 LPIIASCGLDSYLRFWDIKTRQ 334
                + G+D  +  WD+++ +
Sbjct: 341 CSQFCTTGMDGGMSIWDVRSLE 362

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
           G +     G  + +I +++       + S   + ++  WDI T    
Sbjct: 2   GSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISN 47

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 4/114 (3%)

Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
           D            +   D   +   +   + R   +   +   +            L S 
Sbjct: 208 DIDPADPTAYRTGLLTMDL--ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           D+     +         S  S+        +   G    L  +D +T +    V
Sbjct: 266 DLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.3
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.79
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.72
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.66
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.58
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.5
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.3
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.12
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.91
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.88
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.69
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.5
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.42
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.12
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.76
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.4
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.31
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.09
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.98
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.83
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.8
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	95.45
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.6
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.02
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.73
d1suua_	304	DNA gyrase A C-terminal domain {Lyme disease spiro	91.31
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.28
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	87.09
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.7
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.89
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	82.16

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=266.76  Aligned_cols=268  Identities=11%  Similarity=0.058  Sum_probs=215.9

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeecc
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNA   94 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~   94 (341)
                      +++|+ ||.|++|++...............+|...|.+++|++++.    +|++|+.||+|++||+.....  ...+.. 
T Consensus        66 latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-  139 (337)
T d1gxra_          66 VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC----TLIVGGEASTLSIWDLAAPTPRIKAELTS-  139 (337)
T ss_dssp             EEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS----EEEEEESSSEEEEEECCCC--EEEEEEEC-
T ss_pred             EEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC----EEEEeeccccccccccccccccccccccc-
Confidence            44554 7889999988752221122234457889999999987665    899999999999999875433  333333 


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                             +...+..+.+.+...        .+++++.++.+.+|++...         ........+...+.+++|++++
T Consensus       140 -------~~~~v~~~~~~~~~~--------~l~s~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         140 -------SAPACYALAISPDSK--------VCFSCCSDGNIAVWDLHNQ---------TLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             -------SSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTS
T ss_pred             -------ccccccccccccccc--------ccccccccccccccccccc---------cccccccccccccccccccccc
Confidence                   335566666654444        8999999999999998543         2233333467889999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  254 (341)
                      +.+++++.|+.|++||+++++.+..+..          ...|.+++|  +|++++|++++.|+.|++||++..+  ....
T Consensus       196 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~----------~~~i~~l~~--~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~  261 (337)
T d1gxra_         196 TKLWTGGLDNTVRSWDLREGRQLQQHDF----------TSQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--KYQL  261 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEEC----------SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--EEEE
T ss_pred             cccccccccccccccccccceeeccccc----------ccceEEEEE--cccccccceeccccccccccccccc--cccc
Confidence            9999999999999999999988766542          255999999  8999999999999999999999865  3456


Q ss_pred             EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       255 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      ..|...|++++|+|++++|++|+.||.|++||+.+++.+..+. | ...|++++|+|++++|++++.||.|+|||+
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            6789999999999999999999999999999999999987765 4 689999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.9e-39  Score=263.68  Aligned_cols=264  Identities=10%  Similarity=0.056  Sum_probs=209.3

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe--eeccCCCCC
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA--ISNAGDSGA   99 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~   99 (341)
                      .++.+.+|++.+.     .....+.+|...|++++|+++++    +|++|+.||+|+|||+.+++....  +..      
T Consensus        36 ~~~~v~i~~~~~~-----~~~~~~~~H~~~v~~~~~sp~g~----~latg~~dg~i~iwd~~~~~~~~~~~~~~------  100 (311)
T d1nr0a1          36 NGTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKTSPSGY----YCASGDVHGNVRIWDTTQTTHILKTTIPV------  100 (311)
T ss_dssp             ETTEEEEEETTCS-----SCCEEECCCSSCEEEEEECTTSS----EEEEEETTSEEEEEESSSTTCCEEEEEEC------
T ss_pred             eCCEEEEEECCCC-----ceeEEEcCCCCCEEEEEEeCCCC----eEeccccCceEeeeeeecccccccccccc------
Confidence            3445677777665     45556888999999999987665    999999999999999988765433  333      


Q ss_pred             CCCCCceeeEeeeeccccccccccceeEEEccc--ceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE-
Q 019405          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-  176 (341)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-  176 (341)
                        +..++.++.|.+...        .+++++.+  ..+.+|+++....        +..+. .|...|.+++|+|++++ 
T Consensus       101 --~~~~v~~v~~s~d~~--------~l~~~~~~~~~~~~v~~~~~~~~--------~~~l~-~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1         101 --FSGPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGTS--------NGNLT-GQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             --SSSCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCCB--------CBCCC-CCSSCEEEEEECSSSSCE
T ss_pred             --ccCcccccccccccc--------ccccccccccccccccccccccc--------ccccc-ccccccccccccccceee
Confidence              457788888866555        77777654  5588998764431        22222 35678999999999875 


Q ss_pred             EEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-
Q 019405          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-  255 (341)
Q Consensus       177 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-  255 (341)
                      +++|+.|+.|++||+++++....+..+.         ..|.++.|  +|+++++++++.|+.|++||.+++.. +..+. 
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~v~~--~p~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~  229 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHT---------KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTK-TGVFED  229 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEECBC
T ss_pred             eccccccccccccccccccccccccccc---------cccccccc--Cccccccccccccccccccccccccc-cccccc
Confidence            7889999999999999998888777654         56999999  89999999999999999999988653 44443 


Q ss_pred             ------ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          256 ------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       256 ------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                            +|...|++++|+|++++|++|+.||.|+|||+++++++.++..++......+.+.+++..|++++.||.|++||
T Consensus       230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             cccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence                  47789999999999999999999999999999999999999876333333444555667899999999999999


Q ss_pred             cC
Q 019405          330 IK  331 (341)
Q Consensus       330 ~~  331 (341)
                      ++
T Consensus       310 ~d  311 (311)
T d1nr0a1         310 PE  311 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-37  Score=260.31  Aligned_cols=257  Identities=14%  Similarity=0.200  Sum_probs=213.7

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      +...++.+|..+|++++|++++.    +|++|+.||+|+|||+.+++.+..+..        +...+.++.+.+...   
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~----~l~sgs~Dg~v~iWd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~---  110 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSR----LLVSASQDGKLIIWDSYTTNKVHAIPL--------RSSWVMTCAYAPSGN---  110 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS----EEEEEETTTEEEEEETTTTEEEEEEEC--------SCSCEEEEEECTTSS---
T ss_pred             eeeEEECCCCCCEEEEEECCCCC----EEEEEECCCceeeeecccceeEEEEec--------ccccEEeeEeeccce---
Confidence            34457889999999999988766    999999999999999999998888876        447788888876655   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccc--------------------------cccCCceEEEEEe----------ecCC
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVS--------------------------AESSCSTVKSWNV----------CASG  163 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~--------------------------~~~~~~~v~~~~~----------~~~~  163 (341)
                           .+++++.|+.+.+|+.......                          ....+.....+..          ....
T Consensus       111 -----~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         111 -----YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             -----EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             -----eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccce
Confidence                 8999999999999986543210                          0111111122211          1224


Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      .+....+.+.+.++++++.|+.|++||+++++.+..+..+.         ..|.+++|  +|++++|++++.|+.|++||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~---------~~i~~v~~--~p~~~~l~s~s~d~~i~~~~  254 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFD  254 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEE
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC---------CCeEEEEE--CCCCCEEEEEeCCCeEEEEe
Confidence            57788888899999999999999999999999998887654         56999999  89999999999999999999


Q ss_pred             cCCCCceeEEEE--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeC
Q 019405          244 TSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       244 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      ++.... +..+.  .+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+| .++|++++|+|++++|++|+.
T Consensus       255 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         255 LRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTTEE-EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEET
T ss_pred             eccccc-ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEcc
Confidence            997653 44443  35667999999999999999999999999999999999999998 899999999999999999999


Q ss_pred             CCcEEEEE
Q 019405          322 DSYLRFWD  329 (341)
Q Consensus       322 dg~v~iwd  329 (341)
                      ||.|+|||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-37  Score=254.40  Aligned_cols=269  Identities=11%  Similarity=0.133  Sum_probs=226.9

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++++.||.|++|++.+.     +++.++..|...|..+++++++.    +++++..++.+.+|+....+....+..  
T Consensus        31 ~l~s~s~Dg~i~iWd~~~~-----~~~~~~~~h~~~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--   99 (317)
T d1vyhc1          31 VMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISFDHSGK----LLASCSADMTIKLWDFQGFECIRTMHG--   99 (317)
T ss_dssp             EEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEEECTTSS----EEEEEETTSCCCEEETTSSCEEECCCC--
T ss_pred             EEEEEeCCCeEEEEECCCC-----CEEEEEeCCCCcEEEEeeecccc----ccccccccccccccccccccccccccc--
Confidence            4789999999999998876     56778888999999999887666    899999999999999987766555544  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            +...+.++.+.+...        .+++++.|+.+.+|++....        .+..+. .+...+.+++++++++
T Consensus       100 ------~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~  156 (317)
T d1vyhc1         100 ------HDHNVSSVSIMPNGD--------HIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDGT  156 (317)
T ss_dssp             ------CSSCEEEEEECSSSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTSS
T ss_pred             ------ccccceeeeccCCCc--------eEEeeccCcceeEeecccce--------eeeEEc-cCCCcceeeecccCCC
Confidence                  345666666665555        89999999999999986433        444444 3567899999999999


Q ss_pred             EEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe------------------cCCCCEEEEEeCCC
Q 019405          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------------IDDHRKFVAGTNDH  237 (341)
Q Consensus       176 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~~l~~~~~d~  237 (341)
                      +|++++.|+.|++|++.+++....+..+.         ..+.++.|.|                  ...+.++++++.|+
T Consensus       157 ~l~~~~~d~~v~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         157 LIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEEEEeCCCeEEEEeeccceeeEEEecCC---------CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            99999999999999999998888777654         3355555521                  22346799999999


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      .|++||+++++ ++..+.+|..+|.+++|+|++++|++|+.||.|++||+++++++..+.+| .++|++++|+|++++|+
T Consensus       228 ~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         228 TIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             EEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCEE
T ss_pred             EEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEE
Confidence            99999999866 48889999999999999999999999999999999999999999999998 89999999999999999


Q ss_pred             EEeCCCcEEEEE
Q 019405          318 SCGLDSYLRFWD  329 (341)
Q Consensus       318 s~~~dg~v~iwd  329 (341)
                      +++.||+|+|||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-37  Score=261.33  Aligned_cols=275  Identities=17%  Similarity=0.199  Sum_probs=212.6

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeec------------------cCCCCCceeEEEeccCCCCCceEEEEccCCeEE
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERW------------------GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD   78 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~   78 (341)
                      +++.+.||.|++|++.+.     +.+.++                  ..|...|.+++|++++.    +|++|+.||.|+
T Consensus        76 ~lasg~d~~i~iW~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~----~l~s~~~dg~v~  146 (388)
T d1erja_          76 YLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----FLATGAEDRLIR  146 (388)
T ss_dssp             EEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEECTTSS----EEEEEETTSCEE
T ss_pred             EEEEEeCCeEEEEEeccc-----ceEeeecccccccccccccccccccCCCCCEEEEEECCCCC----cceecccccccc
Confidence            333345889999998764     222222                  24666788899887665    899999999999


Q ss_pred             EeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEE
Q 019405           79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN  158 (341)
Q Consensus        79 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~  158 (341)
                      +|+...++.+..+..        +...+.++.+.....        .+++++.++.+.+|++....        .+... 
T Consensus       147 i~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~--------~~~~~~~~~~i~~~d~~~~~--------~~~~~-  201 (388)
T d1erja_         147 IWDIENRKIVMILQG--------HEQDIYSLDYFPSGD--------KLVSGSGDRTVRIWDLRTGQ--------CSLTL-  201 (388)
T ss_dssp             EEETTTTEEEEEECC--------CSSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTTE--------EEEEE-
T ss_pred             ccccccccccccccc--------ccccccccccccccc--------cccccccceeeeeeeccccc--------ccccc-
Confidence            999998888777665        446787787766555        89999999999999975332        22222 


Q ss_pred             eecCCceEEEEe-cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC
Q 019405          159 VCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (341)
Q Consensus       159 ~~~~~~i~~~~~-~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  237 (341)
                       .......++.+ .+++++|++++.|+.|++||.+++.....+.....  ....|...|.+++|  +|++++|++++.|+
T Consensus       202 -~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~--s~~~~~l~s~~~d~  276 (388)
T d1erja_         202 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVF--TRDGQSVVSGSLDR  276 (388)
T ss_dssp             -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEETTS
T ss_pred             -ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc--cccCCCCCEEEEEE--CCCCCEEEEEECCC
Confidence             23334445555 45889999999999999999999888776654321  12235577999999  89999999999999


Q ss_pred             eEEEEEcCCCCc-----------eeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          238 QVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       238 ~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      .|++||+++...           .......|...|.+++|+|++++|++|+.||.|++||+++++++.++++| .+.|.+
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H-~~~V~~  355 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVIS  355 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC-CCCEEE
Confidence            999999976432           23445568889999999999999999999999999999999999999998 899999


Q ss_pred             EEe------cCCCCEEEEEeCCCcEEEEEcC
Q 019405          307 IAR------HPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       307 ~~~------~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      +++      +|++++|++|+.||+|+|||++
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            874      6789999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-36  Score=249.01  Aligned_cols=283  Identities=13%  Similarity=0.131  Sum_probs=224.0

Q ss_pred             eeecCCCCeEEEEEecCc---cCc---cceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhee
Q 019405           18 LTFDSLGLIKVIEARGEH---GGV---PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (341)
Q Consensus        18 ~~~~~~g~i~~~~~~~~~---~g~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   91 (341)
                      +.-+.+|.++.+.+....   .+.   .+.+..+ +|...|.+++|++++.    +|++|+ ||.|+|||+.++.....+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~----~latg~-dg~V~iWd~~~~~~~~~~   88 (337)
T d1gxra_          15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR----HVYTGG-KGCVKVWDISHPGNKSPV   88 (337)
T ss_dssp             EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSS----EEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred             ccCCCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEECCCCC----EEEEEE-CCEEEEEEccCCccccee
Confidence            345677777666555431   111   1234445 6899999999988776    899987 899999999876544333


Q ss_pred             eccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ....   ...|.+.|.++++.+...        .|++++.||.+++|++.....       .+...-..+...+.++.++
T Consensus        89 ~~~~---~~~h~~~I~~v~~s~dg~--------~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~  150 (337)
T d1gxra_          89 SQLD---CLNRDNYIRSCKLLPDGC--------TLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             EEEE---CSCTTSBEEEEEECTTSS--------EEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEEC
T ss_pred             EEee---ecCCCCcEEEEEEcCCCC--------EEEEeeccccccccccccccc-------ccccccccccccccccccc
Confidence            2211   113567899999877655        899999999999999864321       2222223456789999999


Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  251 (341)
                      |++.++++++.|+.|++|++.+++.......+.         ..+.+++|  ++++..+++++.|+.|++||+++++. +
T Consensus       151 ~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~---------~~v~~l~~--s~~~~~~~~~~~d~~v~i~d~~~~~~-~  218 (337)
T d1gxra_         151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGRQ-L  218 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEE-E
T ss_pred             ccccccccccccccccccccccccccccccccc---------cccccccc--ccccccccccccccccccccccccee-e
Confidence            999999999999999999999988877766644         55999999  89999999999999999999998663 5


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      ..+ .|...|.+++|+|++++|++|+.|+.+++||+++++... ...| ...|++++|+|++++|++++.||.|++||+.
T Consensus       219 ~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~-~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         219 QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccc-ccccceEEEEEcccccccceecccccccccccccccccc-cccc-ccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            554 478899999999999999999999999999999887753 4555 8899999999999999999999999999999


Q ss_pred             CCceeeee
Q 019405          332 TRQLLSAV  339 (341)
Q Consensus       332 ~~~~~~~~  339 (341)
                      +++++..+
T Consensus       296 ~~~~~~~~  303 (337)
T d1gxra_         296 YGASIFQS  303 (337)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEc
Confidence            99887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-36  Score=248.39  Aligned_cols=251  Identities=14%  Similarity=0.123  Sum_probs=207.8

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      +.+...++++++++.    .|+.+. ++.|.+|++++++....+..        |.+.+.++.+.+...        .|+
T Consensus        16 ~r~~~~~~a~~~~g~----~l~~~~-~~~v~i~~~~~~~~~~~~~~--------H~~~v~~~~~sp~g~--------~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGD----KIQYCN-GTSVYTVPVGSLTDTEIYTE--------HSHQTTVAKTSPSGY--------YCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSS----EEEEEE-TTEEEEEETTCSSCCEEECC--------CSSCEEEEEECTTSS--------EEE
T ss_pred             CCCCeEEEEEcCCCC----EEEEEe-CCEEEEEECCCCceeEEEcC--------CCCCEEEEEEeCCCC--------eEe
Confidence            334555677776665    777775 77899999998888887766        457889998877655        999


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      +++.||.+++|++.....       ....--..+...|.+++|+|+++++++++.  +..+++|++++++....+..+. 
T Consensus        75 tg~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~-  146 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTH-------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA-  146 (311)
T ss_dssp             EEETTSEEEEEESSSTTC-------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS-
T ss_pred             ccccCceEeeeeeecccc-------ccccccccccCccccccccccccccccccccccccccccccccccccccccccc-
Confidence            999999999999865431       111112235789999999999999999876  4569999999988877776653 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEE
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i  284 (341)
                              ..|.+++|  +|++++ |++|+.|+.|++||+++.+. ...+..|..+|+++.|+|++++|++++.|+.|++
T Consensus       147 --------~~v~~v~~--~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~  215 (311)
T d1nr0a1         147 --------RAMNSVDF--KPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL  215 (311)
T ss_dssp             --------SCEEEEEE--CSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             --------cccccccc--cccceeeeccccccccccccccccccc-ccccccccccccccccCccccccccccccccccc
Confidence                    56999999  788775 88899999999999998654 7788889999999999999999999999999999


Q ss_pred             EECCCCeEEeEEe-------ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          285 VDIRTGKLLGCFI-------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       285 wd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||.++++.+..+.       +| .+.|++++|+|++++|++++.||.|+|||++++++++++
T Consensus       216 ~d~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         216 YNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             EETTTCCEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccccccc-cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            9999988877664       34 789999999999999999999999999999999998876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-36  Score=252.31  Aligned_cols=288  Identities=11%  Similarity=0.042  Sum_probs=214.2

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.+|.|++|+....   .+..+..+.+|..+|.+++|++++.    +|++|+.|++|+|||+.++.....+...
T Consensus        20 ~~la~~~~~~~i~iw~~~~~---~~~~~~~l~gH~~~V~~l~fsp~~~----~l~s~s~D~~i~vWd~~~~~~~~~~~~~   92 (371)
T d1k8kc_          20 TQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPDSN----RIVTCGTDRNAYVWTLKGRTWKPTLVIL   92 (371)
T ss_dssp             SEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETTTT----EEEEEETTSCEEEEEEETTEEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEECCCC---CEEEEEEecCCCCCEEEEEECCCCC----EEEEEECCCeEEEEeecccccccccccc
Confidence            34567888999999998754   2345667889999999999998766    8999999999999999876654444331


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                            .+...+.++.|.+...        .+++++.++.+.+|+++.....     .........+...|.+++|+|++
T Consensus        93 ------~~~~~v~~i~~~p~~~--------~l~~~s~d~~i~i~~~~~~~~~-----~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          93 ------RINRAARCVRWAPNEK--------KFAVGSGSRVISICYFEQENDW-----WVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             ------CCSSCEEEEEECTTSS--------EEEEEETTSSEEEEEEETTTTE-----EEEEEECTTCCSCEEEEEECTTS
T ss_pred             ------cccccccccccccccc--------cceeecccCcceeeeeeccccc-----ccccccccccccccccccccccc
Confidence                  2457788888766655        8999999999999998754321     12222233456789999999999


Q ss_pred             CEEEEeeCCCeEEEEECCCCceeeecCCC-------CC--CccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcC
Q 019405          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------PK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (341)
Q Consensus       175 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-------~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  245 (341)
                      ++|++|+.|+.|++||.............       ..  ......|...|.+++|  +|++++|++++.|+.|++||+.
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF--SANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE--CSSSSEEEEEETTTEEEEEEGG
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe--ecccccccccccCCcceEEeee
Confidence            99999999999999998754322111100       00  0011235577999999  8999999999999999999999


Q ss_pred             CCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC--CCeEEeE----------------------------
Q 019405          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGC----------------------------  295 (341)
Q Consensus       246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~--~~~~~~~----------------------------  295 (341)
                      .+.. +..+..|..+|.+++|+|++++|++|. |+.+++|...  .+.....                            
T Consensus       232 ~~~~-~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
T d1k8kc_         232 KKMA-VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  309 (371)
T ss_dssp             GTTE-EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             cccc-eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence            8664 888999999999999999998877655 7776665433  2221100                            


Q ss_pred             ----------E-eccccCceeEEEecCCC----CEEEEEeCCCcEEEEEcCCC
Q 019405          296 ----------F-IGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       296 ----------~-~~~~~~~i~~~~~~~~~----~~l~s~~~dg~v~iwd~~~~  333 (341)
                                + ..| .+.|+++++.+.+    ..|+|++.||.|++||+++.
T Consensus       310 ~~~~~~~~~~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         310 SEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             --------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             Eeccccccceecccc-cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                      0 013 7789999998754    36899999999999999753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=242.96  Aligned_cols=256  Identities=14%  Similarity=0.204  Sum_probs=221.7

Q ss_pred             eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      .+++.+|.++|++++|++++.    +|++|+.||+|+|||+++++.+.++..        +...+.++.+.+...     
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~----~l~s~s~Dg~i~iWd~~~~~~~~~~~~--------h~~~V~~~~~~~~~~-----   72 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKG--------HTDSVQDISFDHSGK-----   72 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECC--------CSSCEEEEEECTTSS-----
T ss_pred             cEEEcCCCCCeEEEEEcCCCC----EEEEEeCCCeEEEEECCCCCEEEEEeC--------CCCcEEEEeeecccc-----
Confidence            346889999999999987665    999999999999999999999888876        457788888776655     


Q ss_pred             ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecC
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  201 (341)
                         .++.+..++.+.+|+.....         .......+...+.++.++++++.+++++.|+.+++||+++++....+.
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  140 (317)
T d1vyhc1          73 ---LLASCSADMTIKLWDFQGFE---------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  140 (317)
T ss_dssp             ---EEEEEETTSCCCEEETTSSC---------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ---cccccccccccccccccccc---------cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc
Confidence               88899999999998864332         222223456788999999999999999999999999999999888877


Q ss_pred             CCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC-----------
Q 019405          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-----------  270 (341)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------  270 (341)
                      .+.         ..+.+++|  ++++.+|++++.|+.|++|+..+.+. +..+..|...+.+++|+|++           
T Consensus       141 ~~~---------~~~~~~~~--~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  208 (317)
T d1vyhc1         141 GHR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGS  208 (317)
T ss_dssp             CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             cCC---------Ccceeeec--ccCCCEEEEEeCCCeEEEEeecccee-eEEEecCCCCceEEEEeeccccceeeccccc
Confidence            654         55889999  89999999999999999999998664 78888899999999998763           


Q ss_pred             ---------ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          271 ---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       271 ---------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                               .++++++.|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.||.|++||+++++++.++
T Consensus       209 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             eeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence                     46889999999999999999999999998 899999999999999999999999999999999988775

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=244.88  Aligned_cols=287  Identities=19%  Similarity=0.150  Sum_probs=219.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   96 (341)
                      .+....++...+|+......-...+...+ +|...|++++|++++.    +|++|+ |++|+|||+.+++.+..+..+..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~H~~~V~~l~fs~dg~----~lasg~-d~~i~iW~~~~~~~~~~~~~~~~  104 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSNDGE----YLATGC-NKTTQVYRVSDGSLVARLSDDSA  104 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEECTTSS----EEEEEC-BSCEEEEETTTCCEEEEECC---
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeC-CCCCcEEEEEECCCCC----EEEEEe-CCeEEEEEecccceEeeeccccc
Confidence            56677788888887544311111222333 6999999999998766    899887 99999999999988777765332


Q ss_pred             CC----------CCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           97 SG----------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        97 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      ..          ...+...+.+++|.+...        .|++++.||.+++|+.....        .+..+ ..+...|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--------~l~s~~~dg~v~i~~~~~~~--------~~~~~-~~h~~~v~  167 (388)
T d1erja_         105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGK--------FLATGAEDRLIRIWDIENRK--------IVMIL-QGHEQDIY  167 (388)
T ss_dssp             --------------CCCCBEEEEEECTTSS--------EEEEEETTSCEEEEETTTTE--------EEEEE-CCCSSCEE
T ss_pred             ccccccccccccccCCCCCEEEEEECCCCC--------cceecccccccccccccccc--------ccccc-cccccccc
Confidence            11          123566788888876555        89999999999999975433        33333 34678899


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      ++.+++++..+++++.++.+++||.++.........+.          ...++.+. ++++++|++++.|+.|++||.++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~  236 (388)
T d1erja_         168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----------GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSET  236 (388)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS----------CEEEEEEC-STTCCEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccccccceeeeeeecccccccccccccc----------cccccccc-CCCCCeEEEEcCCCeEEEeeccc
Confidence            99999999999999999999999999887776555432          24455553 66889999999999999999998


Q ss_pred             CCceeEEE-------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeE------------EeEEeccccCceeEE
Q 019405          247 QRRPVMSF-------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------------LGCFIGKCSGSIRSI  307 (341)
Q Consensus       247 ~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------------~~~~~~~~~~~i~~~  307 (341)
                      +.. +..+       .+|..+|.+++|+|++++|++|+.|+.|++||+++++.            ......| ...|.++
T Consensus       237 ~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  314 (388)
T d1erja_         237 GFL-VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSV  314 (388)
T ss_dssp             CCE-EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEE
T ss_pred             Ccc-ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc-cceEEEE
Confidence            654 3332       35788999999999999999999999999999976533            3344455 7899999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       308 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +|+|++++|++|+.||.|++||+++++++.++
T Consensus       315 ~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            99999999999999999999999999998776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-34  Score=236.67  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=199.9

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++.+.+.+|..+|++++|+++++    +|++|+.||+|++||+++++.+..+..       .|...+.++.+.+. +   
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~h~~~v~~v~~~~~-g---   67 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK----TLFSADAEGHINSWDISTGISNRVFPD-------VHATMITGIKTTSK-G---   67 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS----EEEEEETTSCEEEEETTTCCEEECSSC-------SCSSCEEEEEECTT-S---
T ss_pred             ccceEcCCCCCCcEEEEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcC-------CCCCcEEEEEeecc-c---
Confidence            45667889999999999988766    899999999999999999888776653       25577888777543 3   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.|+.+++|++.......     . ......+...+.+++++++++++++++ ++.+.+|+.....  ..
T Consensus        68 -----~~~~~~~d~~v~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--~~  133 (299)
T d1nr0a2          68 -----DLFTVSWDDHLKVVPAGGSGVDS-----S-KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--EV  133 (299)
T ss_dssp             -----CEEEEETTTEEEEECSSSSSSCT-----T-SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE--EE
T ss_pred             -----eeecccceeeEEEeccCCccccc-----c-ccccccccccccccccccccccccccc-ccccccccccccc--cc
Confidence                 67788889999999976443211     1 111223456788999999998877665 4589999964322  22


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d  279 (341)
                      ...           ..+.+++|  +|++++|++++.|+.|++||+++.+........|..+|++++|+|++.+|++++.|
T Consensus       134 ~~~-----------~~~~~~~~--s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         134 PIS-----------YNSSCVAL--SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             ECS-----------SCEEEEEE--CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc-----------cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            221           22678899  89999999999999999999987654333455688999999999999999999999


Q ss_pred             CCEEEEECCCCeEEe---EEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCcee
Q 019405          280 GDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (341)
Q Consensus       280 g~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  336 (341)
                      +.|++||+.++..+.   .+.+| ..+|++++|+|++++|++++.||.|++||+++++..
T Consensus       201 ~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         201 RKVIPYSVANNFELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            999999998876543   44556 889999999999999999999999999999886543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-34  Score=244.77  Aligned_cols=248  Identities=10%  Similarity=0.099  Sum_probs=196.8

Q ss_pred             CCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcc--hheeeccCCCCCCCCCCceeeEeeeeccccccccccce
Q 019405           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        48 ~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      ...+|++++|++++.    +||+|+.||.|+|||..+++.  ...+++        |.++|.++.+.+...        .
T Consensus         6 ~~~pIt~~~~s~dg~----~la~~~~~~~i~iw~~~~~~~~~~~~l~g--------H~~~V~~l~fsp~~~--------~   65 (371)
T d1k8kc_           6 LVEPISCHAWNKDRT----QIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDSN--------R   65 (371)
T ss_dssp             CSSCCCEEEECTTSS----EEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTTT--------E
T ss_pred             CCCCeEEEEECCCCC----EEEEEeCCCEEEEEECCCCCEEEEEEecC--------CCCCEEEEEECCCCC--------E
Confidence            347799999988776    899999999999999987653  344444        568899998876555        8


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      |++++.|+.+++|++....        ...... ..+...|.+++|+|+++.|++++.|+.|++|+++............
T Consensus        66 l~s~s~D~~i~vWd~~~~~--------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          66 IVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             EEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCeEEEEeecccc--------cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence            9999999999999986432        112222 2356789999999999999999999999999987654332221110


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC-----------------ceeEEEEecCCCeEEEEEc
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------------RPVMSFDFRETPIKAVAEE  267 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~v~~~~~~  267 (341)
                           ..|...|.+++|  +|++.+|++++.|++|++||.....                 ..+.....|...|.+++|+
T Consensus       138 -----~~~~~~v~~v~~--~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  210 (371)
T d1k8kc_         138 -----KPIRSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS  210 (371)
T ss_dssp             -----TTCCSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred             -----cccccccccccc--cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence                 013366999999  8999999999999999999986422                 1244556688899999999


Q ss_pred             CCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          268 PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       268 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                      |++++|++++.|+.|++||+++++.+..+..| ..+|.+++|+|++++|++| .|+.+++|....
T Consensus       211 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         211 ANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             cccccccccccCCcceEEeeecccceeeeecc-cccceeeeecCCCCEEEEE-cCCceEEEEeeC
Confidence            99999999999999999999999999999988 8899999999999888765 577777766544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=241.12  Aligned_cols=273  Identities=13%  Similarity=0.159  Sum_probs=208.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++|+.||.|++|++.+.     +++.++.+|...|.+++|+++.     +|++|+.|++|++|+....+........
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~-----~~~~~l~~H~~~V~~l~~s~~~-----~l~s~s~D~~i~iw~~~~~~~~~~~~~~   93 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEGH   93 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTT-----EEEEEEECCSSCEEEEEEETTT-----EEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----cEEEEEECCCCCEEEEEEcCCC-----EEEEEecccccccccccccccccccccc
Confidence            46889999999999998876     7788899999999999998643     6999999999999999887665554432


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc-----------------------------
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------------------  145 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~-----------------------------  145 (341)
                             ..........+.....       .+++++.|+.+++|++.....                             
T Consensus        94 -------~~~~~~~~~~~~~~~~-------~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          94 -------NSTVRCLDIVEYKNIK-------YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             -------SSCEEEEEEEEETTEE-------EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             -------cccccccccccccccc-------eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence                   1111222222222221       789999999999999764321                             


Q ss_pred             ---------------ccccCCceEEEEEeecC----------CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec
Q 019405          146 ---------------SAESSCSTVKSWNVCAS----------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       146 ---------------~~~~~~~~v~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~  200 (341)
                                     ..+..++.++.|+....          ..+.++.++++++++++++.|+.|++||++++..+..+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                           12345667777876432          45678899999999999999999999999999999888


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEE-EEcCCCceEEEEeCC
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-AEEPDSFNIYIGNGS  279 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~g~~d  279 (341)
                      ..+.         ..|.++++    ++++|++++.||.|++||+++..   ..+..|...+.++ .+++++.++++| .|
T Consensus       240 ~~h~---------~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         240 QGHT---------ALVGLLRL----SDKFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             CCCS---------SCCCEEEE----CSSEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ET
T ss_pred             cccc---------cccccccc----ccceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eC
Confidence            8754         55888888    45799999999999999998754   3445566666665 456677666655 58


Q ss_pred             CCEEEEECCCCeEEeE-EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEc
Q 019405          280 GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~  330 (341)
                      +.|++||+++++++.. +.+| .++|++++|+|+ .++++++.||.++||.+
T Consensus       303 ~~i~vwd~~tg~~~~~~~~~~-~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANILKD-ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTTTT-CSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCC-CCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            9999999999998864 4555 899999999987 47888999998776643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-33  Score=232.02  Aligned_cols=269  Identities=15%  Similarity=0.146  Sum_probs=198.8

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeec-cCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeec
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERW-GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      -.+++++.||.|++|++.+.     +....+ ..|...+.+++|++++.     +++++.|+.+++|+............
T Consensus        25 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~h~~~v~~v~~~~~g~-----~~~~~~d~~v~~~~~~~~~~~~~~~~   94 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDISTG-----ISNRVFPDVHATMITGIKTTSKGD-----LFTVSWDDHLKVVPAGGSGVDSSKAV   94 (299)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEECSSCSCSSCEEEEEECTTSC-----EEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             CEEEEEcCCCeEEEEECCCC-----cEEEEEcCCCCCcEEEEEeeccce-----eecccceeeEEEeccCCccccccccc
Confidence            45788999999999998765     455555 45889999999998766     67777899999999865432111110


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      .     ..+...+.++.+.+ +.        .++++..++.+.+|+...             .........+.+++++|+
T Consensus        95 ~-----~~~~~~~~~~~~s~-~g--------~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~s~~  147 (299)
T d1nr0a2          95 A-----NKLSSQPLGLAVSA-DG--------DIAVAACYKHIAIYSHGK-------------LTEVPISYNSSCVALSND  147 (299)
T ss_dssp             E-----EECSSCEEEEEECT-TS--------SCEEEEESSEEEEEETTE-------------EEEEECSSCEEEEEECTT
T ss_pred             c-----cccccccccccccc-cc--------cccccccccccccccccc-------------cccccccccccccccccc
Confidence            0     01234455555543 33        455556677888887421             122234456789999999


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCc--ee
Q 019405          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PV  251 (341)
Q Consensus       174 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~  251 (341)
                      ++++++++.|+.|++||+++++.......        .|...|.+++|  +|++.+|++++.|+.|++||+.++..  ..
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~--------~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTI--------VHPAEITSVAF--SNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEE--------ECSSCEEEEEE--CTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             ccccccccccccccccccccccccccccc--------ccccccccccc--cccccccccccccccccccccccccccccc
Confidence            99999999999999999987654332111        13466999999  89999999999999999999987543  13


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEE--eEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEE
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd  329 (341)
                      ..+..|..+|++++|+|++++|++|+.||.|++||+++++..  .....|+...|..+.| +++++|++++.|+.|++||
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            455678899999999999999999999999999999876543  3333443556777655 5678999999999999999


Q ss_pred             cC
Q 019405          330 IK  331 (341)
Q Consensus       330 ~~  331 (341)
                      +.
T Consensus       297 l~  298 (299)
T d1nr0a2         297 VP  298 (299)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-33  Score=232.57  Aligned_cols=260  Identities=13%  Similarity=0.074  Sum_probs=195.4

Q ss_pred             eeeccCC-CCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccc
Q 019405           42 VERWGDP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (341)
Q Consensus        42 ~~~~~~~-~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (341)
                      +..+.+| ...+++++|+|+..  +.+|++|+.||+|+|||+..++....+..+.......+.+++.++.|.+...    
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~--g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~----  128 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKG--SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR----  128 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTT--CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS----
T ss_pred             eEEEeCCCCCCEEEEEEeeCCC--CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC----
Confidence            3455555 56799999997554  4589999999999999998777666655432222223557788888765544    


Q ss_pred             cccceeEEEc--ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE-EEEeeCCCeEEEEECCCCcee
Q 019405          121 SRSRTLLTCT--TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKI  197 (341)
Q Consensus       121 ~~~~~l~~~~--~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~  197 (341)
                          .+++++  .++.+.+|+.+...        .+.... .|...|.+++|+|++.+ +++++.|+.+++||....+..
T Consensus       129 ----~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~  195 (325)
T d1pgua1         129 ----RLCVVGEGRDNFGVFISWDSGN--------SLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  195 (325)
T ss_dssp             ----EEEEEECCSSCSEEEEETTTCC--------EEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             ----ccceeeccccceEEEEeecccc--------cceeee-ecccccccccccccccceEEEeecccccccccccccccc
Confidence                565554  35678888765322        333333 36778999999998865 678999999999999887776


Q ss_pred             eecCCCCCCccCccCCeeeeEEEEEecCC-CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEc---CCCceE
Q 019405          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE---PDSFNI  273 (341)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l  273 (341)
                      .....+..      +...|.+++|  +|+ +.+|++++.|+.|++||+++++. +..+..|..++..+.|+   |++++|
T Consensus       196 ~~~~~~~~------~~~~v~~v~~--~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~~~~s~~~~dg~~l  266 (325)
T d1pgua1         196 ASDRTHHK------QGSFVRDVEF--SPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQKF  266 (325)
T ss_dssp             EEECSSSC------TTCCEEEEEE--CSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred             eecccccC------CCCccEEeee--ccccceeccccccccceeeeeeccccc-cccccccccccccceeeeeccCCCEE
Confidence            66554322      3467999999  775 68899999999999999998764 88888888877666665   788999


Q ss_pred             EEEeCCCCEEEEECCCCeEEeEEeccccC--ceeEEEecCC-CCEEEEEeCCCcEEEEEc
Q 019405          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSG--SIRSIARHPT-LPIIASCGLDSYLRFWDI  330 (341)
Q Consensus       274 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~-~~~l~s~~~dg~v~iwd~  330 (341)
                      ++++.|+.|+|||+++++++..+..+ ..  .+..+++.+. +.+|++++.||.|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC-TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEEec-CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99999999999999999999988765 33  3444444433 347899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=229.13  Aligned_cols=273  Identities=12%  Similarity=0.172  Sum_probs=202.5

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      -.+++++.||.|++|++.+.     +++.++.+|...|.+++|++      ++|++|+.|+.+++|+.............
T Consensus        28 ~~l~sgs~Dg~i~vWd~~~~-----~~~~~~~~h~~~V~~v~~~~------~~l~s~s~D~~~~~~~~~~~~~~~~~~~~   96 (342)
T d2ovrb2          28 NRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWNAETGECIHTLYGH   96 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEEeCCCCCEEEEEeCC------Cccccceecccccccccccccceeccccc
Confidence            46889999999999998776     67788999999999998874      27999999999999999766544333321


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc---------------------ccccCCce
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------------------SAESSCST  153 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~---------------------~~~~~~~~  153 (341)
                              ...+...  .....        .+..+..++.+.+|+......                     ..+..++.
T Consensus        97 --------~~~~~~~--~~~~~--------~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          97 --------TSTVRCM--HLHEK--------RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             --------SSCEEEE--EEETT--------EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             --------ceeEeee--ecccc--------cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence                    1111111  11111        555566666666666543321                     23445666


Q ss_pred             EEEEEeecCC--------ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          154 VKSWNVCASG--------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       154 v~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                      +++|+.....        ......+.+++.++++++.||.|++||++.++.+..+..+.         ..+.++.+    
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~----  225 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---------SLTSGMEL----  225 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC---------SCEEEEEE----
T ss_pred             EEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc---------cceeEEec----
Confidence            6666654332        22334455678999999999999999999999888877654         44777777    


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec----
Q 019405          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG----  298 (341)
Q Consensus       226 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----  298 (341)
                      ++++|++++.|+.|++||+...+. ...+..   |...+.++.++  +.++++|+.||.|++||++++++++.+..    
T Consensus       226 ~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~  302 (342)
T d2ovrb2         226 KDNILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  302 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             CCCEEEEEcCCCEEEEEecccccc-cccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence            457999999999999999998654 555554   45566666665  45999999999999999999999888752    


Q ss_pred             cccCceeEEEecCCCCEEEEEeCCCc----EEEEEcCC
Q 019405          299 KCSGSIRSIARHPTLPIIASCGLDSY----LRFWDIKT  332 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~~dg~----v~iwd~~~  332 (341)
                      .|.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            23678999999999999999999985    99999863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=223.26  Aligned_cols=259  Identities=14%  Similarity=0.222  Sum_probs=201.9

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      +....+++|...|.. ++++++.    +|+||+.||+|+|||+.+++++.++..        |.+.+.++.+.+  .   
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~----~l~sgs~Dg~i~vWd~~~~~~~~~~~~--------h~~~V~~v~~~~--~---   68 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGN----RIVSGSDDNTLKVWSAVTGKCLRTLVG--------HTGGVWSSQMRD--N---   68 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETT----EEEEEETTSCEEEEETTTCCEEEECCC--------CSSCEEEEEEET--T---
T ss_pred             CcCEEECCcCCceEE-EEEECCC----EEEEEeCCCeEEEEECCCCCEEEEEeC--------CCCCEEEEEeCC--C---
Confidence            455578899999854 4555544    899999999999999999999888876        457788877642  2   


Q ss_pred             ccccceeEEEcccceeEEEEeeeccc---------------------ccccCCceEEEEEeecCCceEE--------EEe
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKV---------------------SAESSCSTVKSWNVCASGTIAF--------SKV  170 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~---------------------~~~~~~~~v~~~~~~~~~~i~~--------~~~  170 (341)
                           .+++++.|+.+++|+......                     ..+..++.+.+|+.........        ...
T Consensus        69 -----~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
T d2ovrb2          69 -----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  143 (342)
T ss_dssp             -----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             -----ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence                 899999999999998654322                     1234566777777655433222        233


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce
Q 019405          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (341)
Q Consensus       171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  250 (341)
                      .+....++.++.|+.|++||....+.+..+..+.         ..+...    .+++.++++++.|+.|++||++..+. 
T Consensus       144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~~----~~~~~~l~s~~~dg~i~~~d~~~~~~-  209 (342)
T d2ovrb2         144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSL----QFDGIHVVSGSLDTSIRVWDVETGNC-  209 (342)
T ss_dssp             EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEE----EECSSEEEEEETTSCEEEEETTTCCE-
T ss_pred             ccccceeeeecCCCeEEEeecccceeeEEEcCcc---------cccccc----cCCCCEEEEEeCCCeEEEeeccccee-
Confidence            3456788899999999999999888888877654         223333    34788999999999999999998764 


Q ss_pred             eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc--cCceeEEEecCCCCEEEEEeCCCcEEEE
Q 019405          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFW  328 (341)
Q Consensus       251 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~v~iw  328 (341)
                      +..+..|...+.++.+++  ++|++|+.|+.|++||+...+....+..+.  ...+.++.+  ++.++++++.||.|++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         210 IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW  285 (342)
T ss_dssp             EEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEE
T ss_pred             eeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEE
Confidence            888889999998888765  599999999999999999998888887642  345555555  56799999999999999


Q ss_pred             EcCCCceeeee
Q 019405          329 DIKTRQLLSAV  339 (341)
Q Consensus       329 d~~~~~~~~~~  339 (341)
                      |++++++++++
T Consensus       286 d~~tg~~i~~~  296 (342)
T d2ovrb2         286 DLKTGEFIRNL  296 (342)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999998876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=224.27  Aligned_cols=249  Identities=14%  Similarity=0.184  Sum_probs=192.0

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++++++.+|..+|++++|++        |++|+.||+|++||+.++.     .        .|...+.++.+. ...   
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~~-----~--------~h~~~V~~~~~~-~~~---   58 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSMH-----Q--------DHSNLIVSLDNS-KAQ---   58 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEEE-----C--------CCCSCEEEEECC-STT---
T ss_pred             ceeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCCC-----C--------CCCCCEEEEEec-CCC---
Confidence            67889999999999999853        9999999999999987543     1        244677777653 333   


Q ss_pred             ccccceeEEEcccceeEEEEeeecccc---------------cccCCceEEEEEeecCCceE-------EEEecCCCCEE
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVS---------------AESSCSTVKSWNVCASGTIA-------FSKVDISEKFS  177 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~i~-------~~~~~~~~~~l  177 (341)
                           .+++++.|+++++|++......               ....++.+.+|+......+.       ..+++++++.+
T Consensus        59 -----~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (287)
T d1pgua2          59 -----EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYV  133 (287)
T ss_dssp             -----CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEE
T ss_pred             -----eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcce
Confidence                 7899999999999987654321               11233445556554433332       23456678888


Q ss_pred             EEeeCCC-eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe
Q 019405          178 LFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (341)
Q Consensus       178 ~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  256 (341)
                      ++++.++ .+++|++...+....+...        +...+++++|  +|++.+|++++.||.|++||+.+++.....+..
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~v~~~~~--s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  203 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEVSFDLKTP--------LRAKPSYISI--SPSETYIAAGDVMGKILLYDLQSREVKTSRWAF  203 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEEEEECSSC--------CSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred             eeeccccceeeeeeccccceeeeeeec--------cCCceeEEEe--ccCccccccccccccccceeecccccccccccc
Confidence            8877764 7999999876655554432        2356999999  899999999999999999999987654445677


Q ss_pred             cCCCeEEEEEcCC----------CceEEEEeCCCCEEEEECCC-CeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcE
Q 019405          257 RETPIKAVAEEPD----------SFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (341)
Q Consensus       257 ~~~~v~~~~~~~~----------~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v  325 (341)
                      |..+|.+++|+|.          +.+|++|+.|+.|++||+++ .+.+..+.+| ...|++++|+|++ .|++++.|+.|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCC-EEEEEECCCeE
Confidence            9999999999874          46899999999999999977 4566667777 8999999999986 68899999999


Q ss_pred             EEEEc
Q 019405          326 RFWDI  330 (341)
Q Consensus       326 ~iwd~  330 (341)
                      ++||+
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-32  Score=228.12  Aligned_cols=254  Identities=12%  Similarity=0.196  Sum_probs=199.2

Q ss_pred             eccCCCCCc-eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccc
Q 019405           44 RWGDPHSSN-CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (341)
Q Consensus        44 ~~~~~~~~~-~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (341)
                      ++++|...| +|++  +++    ++|++|+.||+|+|||+.+++.+.++..        |.++|.++.+.+ +.      
T Consensus         7 tL~GH~~~vitc~~--~~~----~~l~tgs~Dg~i~vWd~~~~~~~~~l~~--------H~~~V~~l~~s~-~~------   65 (355)
T d1nexb2           7 TLRGHMTSVITCLQ--FED----NYVITGADDKMIRVYDSINKKFLLQLSG--------HDGGVWALKYAH-GG------   65 (355)
T ss_dssp             EEECCSSSCEEEEE--EET----TEEEEEETTTEEEEEETTTTEEEEEEEC--------CSSCEEEEEEET-TT------
T ss_pred             EECCcCCCcEEEEE--ECC----CEEEEEeCCCeEEEEECCCCcEEEEEEC--------CCCCEEEEEEcC-CC------
Confidence            678898886 4444  444    3899999999999999999999998887        457888888743 44      


Q ss_pred             cceeEEEcccceeEEEEeeeccc-------------------------ccccCCceEEEEEeecCCce------------
Q 019405          123 SRTLLTCTTKGKASMRSIEVTKV-------------------------SAESSCSTVKSWNVCASGTI------------  165 (341)
Q Consensus       123 ~~~l~~~~~~g~~~i~~~~~~~~-------------------------~~~~~~~~v~~~~~~~~~~i------------  165 (341)
                        .+++++.|+.+++|++.....                         +.++.++.+++|+......+            
T Consensus        66 --~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  143 (355)
T d1nexb2          66 --ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  143 (355)
T ss_dssp             --EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEE
T ss_pred             --EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccc
Confidence              899999999999998754321                         24567888999987543110            


Q ss_pred             -------------------EEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCC
Q 019405          166 -------------------AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (341)
Q Consensus       166 -------------------~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (341)
                                         ....+.+++++++++..|+.|++||+++++.+.....+.         ..+.++.|  +++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~--~~~  212 (355)
T d1nexb2         144 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHE  212 (355)
T ss_dssp             ESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETT
T ss_pred             eeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc---------cccccccc--ccc
Confidence                               112344567899999999999999999988877766543         44778888  889


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      +.++++++.|+.|++||++++.. +..+.+|...|.++++++  ++|++|+.||.|++||++++....  ..| ...+..
T Consensus       213 ~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~-~~~~~~  286 (355)
T d1nexb2         213 RKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF--SYH-HTNLSA  286 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE--EEE-CTTCCC
T ss_pred             ceeeecccccceEEeeecccccc-cccccccccccccccccc--ceeeeeecccccccccccccceec--ccc-cCCceE
Confidence            99999999999999999998764 888999999999999975  589999999999999999887654  445 445555


Q ss_pred             E-EecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          307 I-ARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       307 ~-~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                      + .+++++.+|+++ .|+.|++||+++|+++..
T Consensus       287 ~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         287 ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             CCEEEECSSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             EEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            5 456677666665 589999999999998754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=228.59  Aligned_cols=273  Identities=14%  Similarity=0.144  Sum_probs=187.1

Q ss_pred             eccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchh----eeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV----AISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ..++|...|.+++++.      ++|++++.|++|+|||..+.+...    .....      .+...+..+........ .
T Consensus         9 ~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~   75 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF------VHKSGLHHVDVLQAIER-D   75 (393)
T ss_dssp             ESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE------CCTTCEEEEEEEEEEET-T
T ss_pred             cCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcccceeEeee------eccCCceEeeeEeeecc-C
Confidence            4578999999888642      379999999999999976554221    11111      01122211111111000 0


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEe------ecCCceEEEEecCC-----CCEEEEeeCCCeEEE
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV------CASGTIAFSKVDIS-----EKFSLFGGKGVEVNV  188 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~------~~~~~i~~~~~~~~-----~~~l~~~~~d~~v~i  188 (341)
                      +.....+++++.||.+.+|++.......     .+.....      .+...+..+++.++     +.++++++.|+.+++
T Consensus        76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v  150 (393)
T d1sq9a_          76 AFELCLVATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI  150 (393)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred             CCCCcEEEEEeCCCcEEEEEccCCCcee-----eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence            0011267788999999999987654321     1111111      12345667777654     468899999999999


Q ss_pred             EECCCCceee-ecCCCC--------CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeE------E
Q 019405          189 WDLDKCEKIW-TAKPPP--------KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM------S  253 (341)
Q Consensus       189 ~d~~~~~~~~-~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~  253 (341)
                      |++....... .+....        .......+...+.+++|  +|++ +|++|+.|++|++||+.+++. +.      .
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--s~dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~  226 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLRP-LYNFESQHS  226 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTEE-EEEEECCC-
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEE--CCCC-EEEEEeCCCcEEEEeeccccc-ccccccccc
Confidence            9985321100 000000        00011123356889999  7876 899999999999999998653 43      3


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeCCCC---EEEEECCCCeEEeEEe-------------ccccCceeEEEecCCCCEEE
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNGSGD---LASVDIRTGKLLGCFI-------------GKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~l~  317 (341)
                      +.+|..+|++++|+|++++|++|+.|+.   |++||+++++++..+.             +| .+.|++++|+|++++|+
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEE
T ss_pred             cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeE
Confidence            4568899999999999999999999875   9999999998887774             56 89999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCceeeee
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++|.|++|++||+++|++++++
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEEEEE
Confidence            9999999999999999999876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=218.27  Aligned_cols=265  Identities=16%  Similarity=0.225  Sum_probs=202.6

Q ss_pred             cCCCCCceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcch
Q 019405            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (341)
Q Consensus         9 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~   88 (341)
                      |.....-.+++|+.||.|++|++.+.     +++.++.+|...|.+++|  +    +++|++|+.|+.|++|++..+...
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~-----~~~~~l~~H~~~V~~v~~--~----~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQY--D----ERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEEEC--C----SSEEEEEETTSCEEEEESSSCCEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCC-----cEEEEEecCCCCEeeeec--c----cceeeccccccccccccccccccc
Confidence            43334567999999999999999876     677889999999987765  3    348999999999999999887765


Q ss_pred             heeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      ......          ............        .++++..++.+.+|+.......      ........+...+..+
T Consensus        89 ~~~~~~----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~  144 (293)
T d1p22a2          89 NTLIHH----------CEAVLHLRFNNG--------MMVTCSKDRSIAVWDMASPTDI------TLRRVLVGHRAAVNVV  144 (293)
T ss_dssp             EEECCC----------CSCEEEEECCTT--------EEEEEETTSCEEEEECSSSSCC------EEEEEECCCSSCEEEE
T ss_pred             cccccc----------cccccccccccc--------ceeecccccceeEeeccccccc------cccccccccccccccc
Confidence            554431          111222333333        7899999999999997644321      1111122345566666


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                      .+.  ...+++++.|+.|++||+++++.+..+..+.         ..+..+.+    ++..+++++.|+.|++||+++..
T Consensus       145 ~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~  209 (293)
T d1p22a2         145 DFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA  209 (293)
T ss_dssp             EEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCC
T ss_pred             eec--ccccccccCCCceeeecCCCCcEEEEEcccc---------cccccccC----CCCeEEEecCCCEEEEEecccce
Confidence            664  4678889999999999999999888877654         33666666    46789999999999999999866


Q ss_pred             ceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCC---------CeEEeEEeccccCceeEEEecCCCCEEEEE
Q 019405          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (341)
Q Consensus       249 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~  319 (341)
                      . +..+..+...+..  +++++.+|++|+.||.|++||+..         ..++..+.+| .+.|++++|+  +.+|+++
T Consensus       210 ~-~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H-~~~V~~v~~d--~~~l~s~  283 (293)
T d1p22a2         210 C-LRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQFD--EFQIVSS  283 (293)
T ss_dssp             E-EEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEEC--SSCEEEC
T ss_pred             e-eeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC-CCCEEEEEEc--CCEEEEE
Confidence            4 7778778777765  456778999999999999999753         3567888888 8999999994  5689999


Q ss_pred             eCCCcEEEEE
Q 019405          320 GLDSYLRFWD  329 (341)
Q Consensus       320 ~~dg~v~iwd  329 (341)
                      |.||+|++||
T Consensus       284 s~Dg~i~iWD  293 (293)
T d1p22a2         284 SHDDTILIWD  293 (293)
T ss_dssp             CSSSEEEEEC
T ss_pred             ecCCEEEEeC
Confidence            9999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=228.26  Aligned_cols=279  Identities=12%  Similarity=0.035  Sum_probs=185.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCcc-ceeeeccCCCCCceeEE---EeccCCCCCceEEEEccCCeEEEeeCCCCcchhe
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNCVLA---ASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~---~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   90 (341)
                      -.+++++.||.|++|+........+ ........|...+..+.   ........+.++++++.||.|++|++........
T Consensus        25 ~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~  104 (393)
T d1sq9a_          25 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  104 (393)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceee
Confidence            4689999999999999765421111 11111222333322222   2222233334688999999999999876554433


Q ss_pred             eeccC--CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc----cccCCceEEEEEe-----
Q 019405           91 ISNAG--DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS----AESSCSTVKSWNV-----  159 (341)
Q Consensus        91 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~----~~~~~~~v~~~~~-----  159 (341)
                      +..+.  ......+...+..+.+......   .....+++++.||.+.+|++......    .............     
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (393)
T d1sq9a_         105 VIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM  181 (393)
T ss_dssp             EEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred             eeccccceeeeccCCCceEEEEEecCCCc---ccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceeccc
Confidence            33211  1111112233444444332211   11237889999999999998644321    1111112211111     


Q ss_pred             ecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--
Q 019405          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--  237 (341)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--  237 (341)
                      .+...+.+++|+|++ +|++|+.|++|++||+++++++..+.....   ...|..+|.+++|  +|++++|++|+.|+  
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~---l~~h~~~V~~l~~--spdg~~l~sgs~D~t~  255 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS---MINNSNSIRSVKF--SPQGSLLAIAHDSNSF  255 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC------CCCCCEEEEEE--CSSTTEEEEEEEETTE
T ss_pred             CCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccc---cccccceEEEccc--ccccceeeeecCCCCc
Confidence            123458899999987 889999999999999999988776654321   1235678999999  89999999999987  


Q ss_pred             -eEEEEEcCCCCceeEEE-------------EecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCc
Q 019405          238 -QVRLYDTSAQRRPVMSF-------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       238 -~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                       .|++||+++++. +..+             .+|...|++++|+|++++|++|+.|++|++||+++++++.++.+| .+.
T Consensus       256 ~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH-~~~  333 (393)
T d1sq9a_         256 GCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH-CDD  333 (393)
T ss_dssp             EEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-GGG
T ss_pred             ceeeeccccccee-eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc-CCc
Confidence             499999998664 5554             369999999999999999999999999999999999999999988 544


Q ss_pred             e
Q 019405          304 I  304 (341)
Q Consensus       304 i  304 (341)
                      |
T Consensus       334 v  334 (393)
T d1sq9a_         334 I  334 (393)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-30  Score=214.92  Aligned_cols=258  Identities=12%  Similarity=0.107  Sum_probs=193.5

Q ss_pred             CceeEEEeccCCCCCceEEEEccCC-eEEEeeCCCCcc--hheeeccCCCCCCCCCCceeeEeeeeccccccccccceeE
Q 019405           51 SNCVLAASIDDSQNDPLLAVARKNG-LTDILNPLNGDL--RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (341)
Q Consensus        51 ~~~~~~~s~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  127 (341)
                      ..++++|++++.    .|+.++.+. .|+.|+....+.  ...+.+|       +...+.++.+.+....      ..++
T Consensus        19 ~~t~l~~~~~~~----~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh-------~~~~v~~v~fsP~~~g------~~la   81 (325)
T d1pgua1          19 FTTHLSYDPTTN----AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH-------GSSVVTTVKFSPIKGS------QYLC   81 (325)
T ss_dssp             CCCCCEEETTTT----EEEEEETTEEEEEECCSSCCSSCSEEEECTT-------TTSCEEEEEECSSTTC------CEEE
T ss_pred             CeEEEEECCCCC----EEEEEeCCCEEEEEEeCCCCCccceEEEeCC-------CCCCEEEEEEeeCCCC------CEEE
Confidence            456677776655    788776443 367777654332  3333332       2356778887654331      1788


Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC--CCeEEEEECCCCceeeecCCCCC
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPK  205 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~  205 (341)
                      +++.||+++||++.............-..+. .+.++|.+++|+++++++++++.  ++.+.+|+.++++.+..+..|. 
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-  159 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-  159 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS-
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccc-cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc-
Confidence            9999999999999766543211111112233 35678999999999999887654  6789999999999888887654 


Q ss_pred             CccCccCCeeeeEEEEEecCCCCE-EEEEeCCCeEEEEEcCCCCceeEEE---EecCCCeEEEEEcCC-CceEEEEeCCC
Q 019405          206 NSLGIFTPTWFTSAAFLSIDDHRK-FVAGTNDHQVRLYDTSAQRRPVMSF---DFRETPIKAVAEEPD-SFNIYIGNGSG  280 (341)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~g~~dg  280 (341)
                              ..|.+++|  +|++.+ +++++.|+.|++||....+. ...+   ..|...|.+++|+|+ +.+|++++.|+
T Consensus       160 --------~~v~~~~~--~~~~~~~~~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         160 --------QRINACHL--KQSRPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             --------SCEEEEEE--CSSSSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             --------cccccccc--cccccceEEEeeccccccccccccccc-ceecccccCCCCccEEeeeccccceecccccccc
Confidence                    56999999  777664 77899999999999987553 3333   346778999999996 58899999999


Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEec---CCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARH---PTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|++||+++++.+..+.+| ..++..+.|+   |++++|++++.|+.|+|||+++++++.++
T Consensus       229 ~i~iwd~~~~~~~~~l~~~-~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIEDD-QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             CEEEEETTTCCEEEECCBT-TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceeeeeecccccccccccc-ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9999999999999999987 7777666665   78999999999999999999999988765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-30  Score=217.29  Aligned_cols=236  Identities=12%  Similarity=0.095  Sum_probs=183.1

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchhe----
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA----   90 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----   90 (341)
                      -.+++|+.||.|++|++...     +.+..+..|...+.+++|++++.    ++++|+.|+.+++|+.........    
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~-----~~~~~~~~~~~~v~~v~~~~~~~----~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTT-----NKVHAIPLRSSWVMTCAYAPSGN----YVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTT-----EEEEEEECSCSCEEEEEECTTSS----EEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             CEEEEEECCCceeeeecccc-----eeEEEEecccccEEeeEeeccce----eeeeecccceeeccccccccccccccee
Confidence            35789999999999998876     67778888999999999987666    899999999999999865432221    


Q ss_pred             eeccCCCCC---------------------------------CCCCCceeeEeeeeccccccccccceeEEEcccceeEE
Q 019405           91 ISNAGDSGA---------------------------------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (341)
Q Consensus        91 ~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i  137 (341)
                      +..+.....                                 ......+......+..        ..++++..|+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~v~i  210 (340)
T d1tbga_         139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT--------RLFVSGACDASAKL  210 (340)
T ss_dssp             ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS--------SEEEEEETTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccc--------ceeEEeecCceEEE
Confidence            111110000                                 0011112222222222        27888899999999


Q ss_pred             EEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeee
Q 019405          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (341)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (341)
                      |++....        .+..+. .|...|.+++|+|++++|++++.|+.|++||++..+....+....       +...+.
T Consensus       211 ~d~~~~~--------~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~-------~~~~i~  274 (340)
T d1tbga_         211 WDVREGM--------CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------IICGIT  274 (340)
T ss_dssp             EETTTTE--------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------CCSCEE
T ss_pred             EECCCCc--------EEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc-------ccCceE
Confidence            9875433        444444 367889999999999999999999999999999888776654433       235589


Q ss_pred             EEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEE
Q 019405          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (341)
Q Consensus       218 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd  286 (341)
                      +++|  +|++++|++|+.||.|++||+.+++. +..+.+|..+|++++|+|++++|++|+.||.|+|||
T Consensus       275 ~~~~--s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSF--SKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEE--CSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEE--CCCCCEEEEEECCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999  89999999999999999999998764 889999999999999999999999999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=209.69  Aligned_cols=270  Identities=12%  Similarity=0.078  Sum_probs=190.8

Q ss_pred             ceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccc
Q 019405           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (341)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (341)
                      ++++..++|+..|++++|++++.    +||+|+.||+|+|||++++.....+...     ..|..++.+++|.+....  
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~----~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-----~~h~~~V~~v~f~~~~~~--   70 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDNTDL--   70 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEESSSE--
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC----EEEEEECCCeEEEEEccCCCcceEEEEe-----cCCCCCEEEEEEeCCCCC--
Confidence            45667788999999999999877    8999999999999999776544333321     025578999998876543  


Q ss_pred             ccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee
Q 019405          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (341)
Q Consensus       120 ~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~  199 (341)
                           .+++++.||.+.+|++....        ........+........+.++...+++++.++.+++||++++.....
T Consensus        71 -----~l~sg~~d~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~  137 (342)
T d1yfqa_          71 -----QIYVGTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             -----EEEEEETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             -----EEEEcccccceeeeeccccc--------ccccccccccccccccccccccccccccccccccceeecccccccee
Confidence                 79999999999999986443        22333333334445556667888999999999999999875432222


Q ss_pred             cCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCcee--EEEEecCCCeEEEEEcC-CCceEEEE
Q 019405          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFRETPIKAVAEEP-DSFNIYIG  276 (341)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~g  276 (341)
                      .........   .........+  .+.+..+++++.|+.|++||++......  .....+...+.+..+.+ ++..++++
T Consensus       138 ~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         138 AVKNLNSNN---TKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             EEEESCSSS---SSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             eeccccccc---ccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee
Confidence            111100000   0111333444  5678899999999999999998755322  22223444566665554 66789999


Q ss_pred             eCCCCEEEEECCCCeE---------EeE------EeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          277 NGSGDLASVDIRTGKL---------LGC------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~---------~~~------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.||.+.+|+......         ...      ...| ...|++++|+|++++|++|+.||.|++||+++++++.++
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence            9999999998764321         111      1223 567999999999999999999999999999999988765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-28  Score=203.82  Aligned_cols=281  Identities=11%  Similarity=0.012  Sum_probs=196.6

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccC
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++++.||.|++|++.... ...++. ...+|..+|.+++|+++..   .+|++|+.||.|++|+...+........+ 
T Consensus        25 ~L~s~s~Dg~v~iwd~~~~~-~~~~~~-~~~~h~~~V~~v~f~~~~~---~~l~sg~~d~~v~~w~~~~~~~~~~~~~~-   98 (342)
T d1yfqa_          25 LLLITSWDGSLTVYKFDIQA-KNVDLL-QSLRYKHPLLCCNFIDNTD---LQIYVGTVQGEILKVDLIGSPSFQALTNN-   98 (342)
T ss_dssp             EEEEEETTSEEEEEEEETTT-TEEEEE-EEEECSSCEEEEEEEESSS---EEEEEEETTSCEEEECSSSSSSEEECBSC-
T ss_pred             EEEEEECCCeEEEEEccCCC-cceEEE-EecCCCCCEEEEEEeCCCC---CEEEEcccccceeeeeccccccccccccc-
Confidence            57889999999999998762 111222 2335899999999998643   37999999999999999877665554442 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEee---cCCceEEEEecC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC---ASGTIAFSKVDI  172 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~---~~~~i~~~~~~~  172 (341)
                            ...............        .+++++.++.+.+|++......      ........   .........+.+
T Consensus        99 ------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  158 (342)
T d1yfqa_          99 ------EANLGICRICKYGDD--------KLIAASWDGLIEVIDPRNYGDG------VIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             ------CCCSCEEEEEEETTT--------EEEEEETTSEEEEECHHHHTTB------CEEEEESCSSSSSSCCCEEEEEE
T ss_pred             ------ccccccccccccccc--------cccccccccccceeeccccccc------eeeecccccccccceeeeeeeec
Confidence                  112222233333333        8999999999999998654321      11111111   112344556677


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce--
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--  250 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--  250 (341)
                      .+..+++++.|+.|++||+...+..........      ....+.+..+. +.++..+++++.||.+.+|+.......  
T Consensus       159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG------LKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             CSSEEEEEESTTEEEEEESSCCTTCCCEEEECS------CSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             cCCceeeecCCCcEEEEecccCcccceeeeecc------cccceeeeEee-cCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            889999999999999999987654332221111      11224455553 567789999999999999997653210  


Q ss_pred             ---eEE---------EEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEE
Q 019405          251 ---VMS---------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       251 ---~~~---------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s  318 (341)
                         ...         ...|...+++++|+|++++|++|+.||.|++||+++++.+..+..+  ..+..++|+|++++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~--~~~~~~~~s~~~~~l~~  309 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--NEDSVVKIACSDNILCL  309 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--SSSEEEEEEECSSEEEE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC--CCCEEEEEEeCCCEEEE
Confidence               111         1235667999999999999999999999999999999999888754  34556788889999999


Q ss_pred             EeCCCcEEEEEcC
Q 019405          319 CGLDSYLRFWDIK  331 (341)
Q Consensus       319 ~~~dg~v~iwd~~  331 (341)
                      ++.|+.+++|...
T Consensus       310 a~sdd~~~~~~~~  322 (342)
T d1yfqa_         310 ATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECTHHHHCSSS
T ss_pred             EEcCCcEEEeeee
Confidence            9999888888653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-26  Score=187.23  Aligned_cols=238  Identities=14%  Similarity=0.222  Sum_probs=182.0

Q ss_pred             eeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccc
Q 019405           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (341)
Q Consensus        42 ~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (341)
                      +..+.+|...|+|+++  +    +++||+|+.||+|+|||+++++++.++..        |.+.+.++.+  ...     
T Consensus         8 i~~~~~~~~~V~c~~~--d----~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~--------H~~~V~~v~~--~~~-----   66 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--D----DQKIVSGLRDNTIKIWDKNTLECKRILTG--------HTGSVLCLQY--DER-----   66 (293)
T ss_dssp             EECCCSSCCCEEEEEC--C----SSEEEEEESSSCEEEEESSSCCEEEEECC--------CSSCEEEEEC--CSS-----
T ss_pred             EeccCCCCCCEEEEEE--c----CCEEEEEeCCCeEEEEECCCCcEEEEEec--------CCCCEeeeec--ccc-----
Confidence            3455677788887653  4    44899999999999999999999988876        4577888775  222     


Q ss_pred             ccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceee---
Q 019405          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW---  198 (341)
Q Consensus       122 ~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~---  198 (341)
                         .|++++.|+.+.+|++....        ......   ........+.+....++++..++.+.+||..+.....   
T Consensus        67 ---~l~s~s~D~~i~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          67 ---VIITGSSDSTVRVWDVNTGE--------MLNTLI---HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             ---EEEEEETTSCEEEEESSSCC--------EEEEEC---CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ---eeeccccccccccccccccc--------cccccc---ccccccccccccccceeecccccceeEeeccccccccccc
Confidence               89999999999999986443        111111   1122233445567788999999999999998655332   


Q ss_pred             ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC
Q 019405          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (341)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~  278 (341)
                      .+..+         ...+....+    ....+++++.|+.|++||.++.+. +..+.++...+..+.++  +..+++++.
T Consensus       133 ~~~~~---------~~~v~~~~~----~~~~~~~~s~d~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~~~~~  196 (293)
T d1p22a2         133 VLVGH---------RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR--DRLVVSGSS  196 (293)
T ss_dssp             EECCC---------SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE--TTEEEEEET
T ss_pred             ccccc---------cccccccee----cccccccccCCCceeeecCCCCcE-EEEEcccccccccccCC--CCeEEEecC
Confidence            22222         244666666    456788999999999999998764 88888888888888775  458999999


Q ss_pred             CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCC
Q 019405          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (341)
Q Consensus       279 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  333 (341)
                      |+.|++||+++.+.+..+.++ ...+..  +.+++.+|++++.||.|++||+.++
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~-~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGH-EELVRC--IRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-SSCEEE--EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             CCEEEEEecccceeeeeeccc-ceeeee--ccccceEEEEEcCCCEEEEEECCCC
Confidence            999999999999999999887 677764  5567889999999999999997643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3.2e-24  Score=174.97  Aligned_cols=271  Identities=14%  Similarity=0.084  Sum_probs=202.5

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .++.+.+|.|.+|++.+.     +++.++... .....++|+++++    +| +++..++.|++||+.+++.+..+..+ 
T Consensus         5 yV~~~~~~~v~v~D~~t~-----~~~~~i~~g-~~p~~va~spdG~----~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-   73 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN-----KVTATIPVG-SNPMGAVISPDGT----KVYVANAHSNDVSIIDTATNNVIATVPAG-   73 (301)
T ss_dssp             EEEETTTTEEEEEETTTT-----EEEEEEECS-SSEEEEEECTTSS----EEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred             EEEECCCCEEEEEECCCC-----eEEEEEECC-CCceEEEEeCCCC----EEEEEECCCCEEEEEECCCCceeeeeecc-
Confidence            467789999999998876     677676433 3456788887766    66 56778999999999999888877653 


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                              .....+.+.+....       .++++..++.+.+|+.....        .+.  .........++.++|+++
T Consensus        74 --------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~dg~  128 (301)
T d1l0qa2          74 --------SSPQGVAVSPDGKQ-------VYVTNMASSTLSVIDTTSNT--------VAG--TVKTGKSPLGLALSPDGK  128 (301)
T ss_dssp             --------SSEEEEEECTTSSE-------EEEEETTTTEEEEEETTTTE--------EEE--EEECSSSEEEEEECTTSS
T ss_pred             --------cccccccccccccc-------ccccccccceeeecccccce--------eee--eccccccceEEEeecCCC
Confidence                    33455655544442       56667777888899864332        222  233456778899999998


Q ss_pred             EEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC-CeEEEEEcCCCCceeEE
Q 019405          176 FSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMS  253 (341)
Q Consensus       176 ~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~  253 (341)
                      .++ ++..++.+.+|+..+.+....+....          .+..+.+  .+++..++++..+ +.+.+|+....+ ....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  195 (301)
T d1l0qa2         129 KLYVTNNGDKTVSVINTVTKAVINTVSVGR----------SPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNS-VIDT  195 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECCS----------SEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-EEEE
T ss_pred             eeeeeeccccceeeeeccccceeeecccCC----------CceEEEe--eccccceeeeccccccccccccccee-eeec
Confidence            775 55567889999999988887766542          3677888  7888888877665 566777766543 2444


Q ss_pred             EEecCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEE-EEEeCCCcEEEEE
Q 019405          254 FDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLRFWD  329 (341)
Q Consensus       254 ~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~v~iwd  329 (341)
                      +. .......+++++++..++++..   ++.|++||+.+++.+..+..+  ..+.+++|+|||++| ++++.|+.|++||
T Consensus       196 ~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            44 4456788999999988876543   467999999999999888754  568999999999976 6777899999999


Q ss_pred             cCCCceeeee
Q 019405          330 IKTRQLLSAV  339 (341)
Q Consensus       330 ~~~~~~~~~~  339 (341)
                      +++++.+.++
T Consensus       273 ~~t~~~~~~~  282 (301)
T d1l0qa2         273 TATNTITATM  282 (301)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9999998876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=187.66  Aligned_cols=230  Identities=9%  Similarity=0.032  Sum_probs=156.8

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee---c
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS---N   93 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~   93 (341)
                      +++++.||.|++|++...          ...|...|.+++++.+.     .+++++.|++|++|+..+.+......   .
T Consensus        24 l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-----~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~   88 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-----EYSSISWDDTLKVNGITKHEFGSQPKVASA   88 (287)
T ss_dssp             TEEEETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-----CCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-----eEEEEeeccccccccccccccccceeeeee
Confidence            889999999999986543          24688889888877543     48999999999999976533211111   0


Q ss_pred             cCCCC--CC----------CCCCcee--------eEeeeeccccccccccceeEEEccc-ceeEEEEeeecccccccCCc
Q 019405           94 AGDSG--AQ----------PEDDGIV--------GLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIEVTKVSAESSCS  152 (341)
Q Consensus        94 ~~~~~--~~----------~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~i~~~~~~~~~~~~~~~  152 (341)
                      .....  ..          .......        ...+....        ..+++++.+ +.+++|++....        
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~v~~~~~~~~~--------  152 (287)
T d1pgua2          89 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ--------NYVAVGLEEGNTIQVFKLSDLE--------  152 (287)
T ss_dssp             CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS--------SEEEEEETTTSCEEEEETTEEE--------
T ss_pred             ccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccC--------cceeeeccccceeeeeeccccc--------
Confidence            00000  00          0000000        00111111        144444444 467788764322        


Q ss_pred             eEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeee-cCCCCCCccCccCCeeeeEEEEEe--------
Q 019405          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLS--------  223 (341)
Q Consensus       153 ~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~--------  223 (341)
                      ........+...+.+++|+|++.+|++|+.||.|++||+.+++.... +..         |...|.+++|.|        
T Consensus       153 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---------h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF---------RTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC---------CSSCEEEEEECCCC------
T ss_pred             eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc---------cccccceeeecccccccccc
Confidence            12222233457899999999999999999999999999998876543 233         336689999843        


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       224 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                      .+++.+|++|+.|++|++||+++....+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            13457899999999999999987665577778899999999999987 5889999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.2e-25  Score=188.31  Aligned_cols=272  Identities=10%  Similarity=0.039  Sum_probs=192.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccC--CeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN--GLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~   92 (341)
                      -+.++...+|.+.+|++...     ++. .. .|...+..++|++|++    +|++++.+  ..|++||.++++... +.
T Consensus        15 G~~~a~~~~g~v~v~d~~~~-----~~~-~~-~~~~~v~~~~~spDg~----~l~~~~~~~g~~v~v~d~~~~~~~~-~~   82 (360)
T d1k32a3          15 GDLIAFVSRGQAFIQDVSGT-----YVL-KV-PEPLRIRYVRRGGDTK----VAFIHGTREGDFLGIYDYRTGKAEK-FE   82 (360)
T ss_dssp             GGCEEEEETTEEEEECTTSS-----BEE-EC-SCCSCEEEEEECSSSE----EEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred             CCEEEEEECCeEEEEECCCC-----cEE-Ec-cCCCCEEEEEECCCCC----EEEEEEcCCCCEEEEEECCCCcEEE-ee
Confidence            44566667889999988654     333 34 5888899999988776    78776544  379999998876543 32


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~  172 (341)
                      .        +...+.++.+.+...        .+++++.++.+.+|++....        ...... .+...+.+++|+|
T Consensus        83 ~--------~~~~v~~~~~spdg~--------~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~sp  137 (360)
T d1k32a3          83 E--------NLGNVFAMGVDRNGK--------FAVVANDRFEIMTVDLETGK--------PTVIER-SREAMITDFTISD  137 (360)
T ss_dssp             C--------CCCSEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC--------EEEEEE-CSSSCCCCEEECT
T ss_pred             C--------CCceEEeeeeccccc--------ccceeccccccccccccccc--------eeeeee-cccccccchhhcc
Confidence            2        457788888776666        99999999999999985433        333333 3556788999999


Q ss_pred             CCCEEEEee----------CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          173 SEKFSLFGG----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       173 ~~~~l~~~~----------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ++++|+.+.          .++.+++||+.+++........          ..+..++|  +|++++|++++.++.+++|
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----------~~~~~~~~--spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN----------SHDYAPAF--DADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS----------SBEEEEEE--CTTSCEEEEEESCCCCCEE
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeecccc----------cccccccc--cCCCCEEEEEeCCCceEcc
Confidence            999998543          4557999999887665443322          44777889  8999999999999999999


Q ss_pred             EcCCCCc------eeEEEEecC------------------------------------CCeEEEEEcCCC----------
Q 019405          243 DTSAQRR------PVMSFDFRE------------------------------------TPIKAVAEEPDS----------  270 (341)
Q Consensus       243 d~~~~~~------~~~~~~~~~------------------------------------~~v~~~~~~~~~----------  270 (341)
                      |......      ....+..+.                                    .....+...+++          
T Consensus       206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (360)
T d1k32a3         206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG  285 (360)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred             cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence            8654211      011111111                                    111222222221          


Q ss_pred             ---ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          271 ---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       271 ---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                         .++++++.++.|++||+.+++..    .+ .+.|.+++|+|||++|++++.||.|++||+++++...++.
T Consensus       286 ~~~~~~~~~~~~~~i~~~d~~~~~~~----~~-~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         286 EFAAYYQGAPEKGVLLKYDVKTRKVT----EV-KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCCEE----EE-EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CCeeEEEecCCCCEEEEEECCCCeEE----Ee-cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence               23455667888999999887653    22 4568999999999999999999999999999998877653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.8e-24  Score=184.38  Aligned_cols=297  Identities=14%  Similarity=0.034  Sum_probs=193.6

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeecc
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ..+++.++||.|++|++...     +++.++..+. .+..++||+|++    +|++++.|++|++||+.+++.....+..
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~-----~~~~~l~~g~-~~~~vafSPDGk----~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGY-AVHISRMSASGR----YLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----SEEEEEECCS-SEEEEEECTTSC----EEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----cEEEEEeCCC-CeeEEEECCCCC----EEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            45788999999999999876     7777886654 578889988777    8999999999999999988765433210


Q ss_pred             CCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeeccc------------------------ccccC
Q 019405           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS  150 (341)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~------------------------~~~~~  150 (341)
                      ...   .+...+.+..+.+...       ..++++..++.+.+|+......                        ...+.
T Consensus       103 ~~~---~~~~~~~s~~~spDG~-------~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2         103 IGI---EARSVESSKFKGYEDR-------YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             CCS---EEEEEEECCSTTCTTT-------EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             CCC---CCcceEEeeeecCCCC-------EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            000   0001111112212222       0234455667777776543211                        00111


Q ss_pred             Cce-----------EEEE-----------EeecCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCc
Q 019405          151 CST-----------VKSW-----------NVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       151 ~~~-----------v~~~-----------~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      ++.           +..+           .......+..+.++|++++++++. .+..+.+++..+++........... 
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP-  251 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC-
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc-
Confidence            111           1111           122334567889999999877765 4567999999998887766543321 


Q ss_pred             cCccCCeeeeEEEEEecCCCCEE--EEEeCCCeEEEEEcCCCC------ceeEEEEecCCCeEEEEEcCCCceEEE----
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKF--VAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDSFNIYI----  275 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l--~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~----  275 (341)
                            .+.....+. .+....+  +....|+.+.+|+.....      .....+.+|...+..++|+|++++|++    
T Consensus       252 ------~~~~~~~~~-~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         252 ------HPGRGANFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             ------CCSCCEEEE-ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTT
T ss_pred             ------cccceeeee-cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecC
Confidence                  112233332 2222222  233457888888865431      246788899999999999999999995    


Q ss_pred             ---EeCCCCEEEEECCCCeEEeEEecc--------ccCceeEEEecCCCCEEEEE-----eCCCcEEEEEcCCCceeeee
Q 019405          276 ---GNGSGDLASVDIRTGKLLGCFIGK--------CSGSIRSIARHPTLPIIASC-----GLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       276 ---g~~dg~i~iwd~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~  339 (341)
                         +..+++|++||+.+++...++..+        +...|.+++|+|||++++.+     +.|+.|+|||.++++.+..+
T Consensus       325 ~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         325 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE
Confidence               456789999999998876655321        24569999999999976432     36889999999999987765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.1e-22  Score=168.23  Aligned_cols=286  Identities=12%  Similarity=-0.011  Sum_probs=193.9

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccC--CCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheee
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      .+++++.|+.|++|++.+.     +++..+..  +...+..++|++|++    +| ++++.++.|.+||+.+++.+..+.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~-----~~~~~i~~~~~~~~~~~i~~spDg~----~l~v~~~~~~~v~v~D~~t~~~~~~~~   73 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMVAPGGR----IAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEECTTSS----EEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC-----eEEEEEECCCCCCCccEEEECCCCC----EEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            4789999999999999886     56665543  445567888888776    65 567889999999999999888776


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccc------------eeEEEEeeecccccccCCceEEEEEee
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG------------KASMRSIEVTKVSAESSCSTVKSWNVC  160 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------------~~~i~~~~~~~~~~~~~~~~v~~~~~~  160 (341)
                      .+....   ....+..+.+.+...        .++.+..+.            .+.+|+.....        .  .....
T Consensus        74 ~~~~~~---~~~~~~~v~~s~dg~--------~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~--~~~~~  132 (337)
T d1pbyb_          74 LSTPEE---RVKSLFGAALSPDGK--------TLAIYESPVRLELTHFEVQPTRVALYDAETLS--------R--RKAFE  132 (337)
T ss_dssp             CCBTTE---EEECTTCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------E--EEEEE
T ss_pred             cCCCcc---cccceeeEEEcCCCc--------EEEEeecCCcceeeeccccccceeeccccCCe--------E--EEecc
Confidence            532110   011122333333333        455554433            33334332111        1  12223


Q ss_pred             cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCC--------------eeeeEEEEEecCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP--------------TWFTSAAFLSIDD  226 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~  226 (341)
                      ....+..++++|+++++++++.+  +.+||..+++....+............+              ........  ..+
T Consensus       133 ~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  208 (337)
T d1pbyb_         133 APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA--RKD  208 (337)
T ss_dssp             CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEE--BTT
T ss_pred             ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeee--eec
Confidence            34567789999999999988654  7789999988777665433211100000              00001111  122


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      ......+..++.+.+||..++......+..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+..  ...+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~--~~~~~~  284 (337)
T d1pbyb_         209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYS  284 (337)
T ss_dssp             SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCE
T ss_pred             cceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC--CCCEEE
Confidence            22223334456799999998776555666777888899999999888766  57899999999999988864  567899


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++|+|||++|++++.|+.|++||.++++.+.++
T Consensus       285 ~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            999999999999999999999999999998876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.9e-22  Score=172.74  Aligned_cols=294  Identities=13%  Similarity=0.029  Sum_probs=176.6

Q ss_pred             eeeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheeecc
Q 019405           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (341)
Q Consensus        16 ~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~   94 (341)
                      ++++++.||.+++|++....   .+.+...+. ......+++++..+|+|++| +++..+++|+|||..+++.+..+..+
T Consensus        75 ~l~~~s~dg~v~~~d~~t~~---~~~~~~i~~-~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          75 YLFVIGRDGKVNMIDLWMKE---PTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             EEEEEETTSEEEEEETTSSS---CCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEeeCCC---ceEEEEEec-CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            35566778888888877641   122222221 11223456677777888776 67888999999999999988877654


Q ss_pred             CCCCCC---CCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec
Q 019405           95 GDSGAQ---PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (341)
Q Consensus        95 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  171 (341)
                      ......   ........+.+.+...       ..+++...++.+.+|+....        ...+++.+.++.....++++
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~s~dg~-------~~~vs~~~~~~i~~~d~~~~--------~~~~~~~i~~g~~~~~~~~s  215 (432)
T d1qksa2         151 GMTYDEQEYHPEPRVAAILASHYRP-------EFIVNVKETGKILLVDYTDL--------NNLKTTEISAERFLHDGGLD  215 (432)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSS-------EEEEEETTTTEEEEEETTCS--------SEEEEEEEECCSSEEEEEEC
T ss_pred             CccccceeccCCCceeEEEECCCCC-------EEEEEEccCCeEEEEEccCC--------CcceEEEEcccCccccceEC
Confidence            321110   1222333333333222       15567777888888886432        25677777778889999999


Q ss_pred             CCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 019405          172 ISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR  249 (341)
Q Consensus       172 ~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~  249 (341)
                      |+++++++++. ++.+.++|..+++....+.......    +........+  ...+...++.. .++.|.+|+......
T Consensus       216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~----~~~~~~~~~~--~~~g~~~~~~~lg~~~v~~~~~~~~~~  289 (432)
T d1qksa2         216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP----HPGRGANFVH--PTFGPVWATSHMGDDSVALIGTDPEGH  289 (432)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB----CCTTCEEEEE--TTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             CCCCEEEEeccccceEEEeecccceEEEEeccCcccc----ccCcccceec--CCCCceecccccCCceEEecccccccc
Confidence            99998776654 5689999998887765544322111    0011111122  22222222221 244555554432110


Q ss_pred             ------eeEEEEe-------------------------cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEec
Q 019405          250 ------PVMSFDF-------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (341)
Q Consensus       250 ------~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  298 (341)
                            ....+..                         |.....++++ ||++.|++++.|+.+++||+.++..+   ..
T Consensus       290 ~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~  365 (432)
T d1qksa2         290 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TE  365 (432)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CS
T ss_pred             cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CC
Confidence                  0111111                         1111223443 77888888888888888887554332   24


Q ss_pred             cccCceeEEEecCCCCEEEEEe-----CCCcEEEEEcCCCceeeee
Q 019405          299 KCSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~  339 (341)
                      | ...+.+++|+|||++++.+.     .+|.|.|||.+++++...+
T Consensus       366 ~-~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i  410 (432)
T d1qksa2         366 G-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  410 (432)
T ss_dssp             S-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             C-CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEe
Confidence            4 56799999999999876554     4688999999999987765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=7.7e-21  Score=157.65  Aligned_cols=293  Identities=10%  Similarity=-0.001  Sum_probs=186.4

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceE-EEEccCCeEEEeeCCCCcchheee
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      -.+++++.++.|.+|++...     +++.++. .+......++|++|++    ++ +++..++.|++||+.+++.+..+.
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~-----~~~~t~~~~~~~~p~~l~~spDG~----~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPGTAMMAPDNR----TAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSCEEEECTTSS----EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCC-----CEEEEEEcCCCCCcceEEECCCCC----EEEEEECCCCcEEEEeCccCeeeeeec
Confidence            45788999999999999876     6776664 3455677889887776    65 566789999999999998877665


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc------------cceeEEEEeeecccccccCCceEEEEEee
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------------KGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~g~~~i~~~~~~~~~~~~~~~~v~~~~~~  160 (341)
                      ......  .....+..+.+.+...        .++++..            ++.+.+|+......     ...+....  
T Consensus        80 ~~~~~~--~~~~~~~~v~~s~DG~--------~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~--  142 (346)
T d1jmxb_          80 LSSVPG--EVGRSMYSFAISPDGK--------EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFP--  142 (346)
T ss_dssp             SCCSTT--EEEECSSCEEECTTSS--------EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEE--
T ss_pred             cccccc--ccCCceEEEEEecCCC--------EEEEEecCCcceeeeeccCcceEEEEeccccee-----eeEEEeee--
Confidence            421100  0001122233322222        3433332            33444444332221     11112211  


Q ss_pred             cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCc------------cCCeee--eEEEEEecCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI------------FTPTWF--TSAAFLSIDD  226 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~------------~~~~~v--~~~~~~~~~~  226 (341)
                      .+..+..+.+++++..++.+   +.+.+|++.+++....+..+.......            .....+  ........+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         143 MPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             CCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             ccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            12334455666666665543   458899999888877665432110000            000111  1111111233


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE
Q 019405          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (341)
Q Consensus       227 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~  306 (341)
                      ...++++..+..+.+||..++.........+...+..+.+++++.+++... ++.|.+||..+++.+..+..  ...+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~--~~~~~~  296 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--DHTYYC  296 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCE
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC--CCCEEE
Confidence            344555666778999999987765566677888899999999988887765 45799999999999988864  457999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       307 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ++|+|||++|++++.|+.|++||+++++.+.++
T Consensus       297 va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECccCCEEEEE
Confidence            999999999999999999999999999999876

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=9.5e-21  Score=158.05  Aligned_cols=184  Identities=13%  Similarity=0.034  Sum_probs=147.5

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC--eEEEEECCCCceeeecCC
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP  202 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~  202 (341)
                      .+++....|.+.+|++...         .+..  ..|...|.+++|+||+++|++++.+.  .|++||+++++... +..
T Consensus        16 ~~~a~~~~g~v~v~d~~~~---------~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~   83 (360)
T d1k32a3          16 DLIAFVSRGQAFIQDVSGT---------YVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEE   83 (360)
T ss_dssp             GCEEEEETTEEEEECTTSS---------BEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCC
T ss_pred             CEEEEEECCeEEEEECCCC---------cEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeC
Confidence            4444455789999987533         2222  35788999999999999998877653  79999998876654 333


Q ss_pred             CCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe-----
Q 019405          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-----  277 (341)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-----  277 (341)
                      +         ...+.+++|  +|++++|++++.++.+++|++.+++. ...+..|...+.+++|+|+|++|+.+.     
T Consensus        84 ~---------~~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~  151 (360)
T d1k32a3          84 N---------LGNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHG  151 (360)
T ss_dssp             C---------CCSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             C---------CceEEeeee--cccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeecccccc
Confidence            3         355899999  99999999999999999999998764 777888888999999999999998654     


Q ss_pred             -----CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          278 -----GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       278 -----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                           .++.+++||+.+++...... + ...+..++|+|+|++|++++.|+.+++||.....
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~~~-~-~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAATT-E-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSC-S-SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             ceeeccccceeeeccccCceeeecc-c-ccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence                 34569999999887765443 3 5678899999999999999999999999976644

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=2.4e-19  Score=153.39  Aligned_cols=245  Identities=11%  Similarity=0.078  Sum_probs=169.8

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++++++.||+|+|||+.+++.+.++..+         ..+..+.+.+..+        .+++++.|+.+.+|++....  
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g---------~~~~~vafSPDGk--------~l~~~~~d~~v~vwd~~t~~--   94 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG---------YAVHISRMSASGR--------YLLVIGRDARIDMIDLWAKE--   94 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC---------SSEEEEEECTTSC--------EEEEEETTSEEEEEETTSSS--
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC---------CCeeEEEECCCCC--------EEEEEeCCCCEEEEEccCCc--
Confidence            4677889999999999999999998863         3466666555444        88899999999999986543  


Q ss_pred             cccCCceEEEEEee----cCCceEEEEecCCCCEEEE-eeCCCeEEEEECCCCceeeecCCCCCCc--cCccCCeeeeEE
Q 019405          147 AESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNS--LGIFTPTWFTSA  219 (341)
Q Consensus       147 ~~~~~~~v~~~~~~----~~~~i~~~~~~~~~~~l~~-~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~  219 (341)
                            ......+.    +...+.+++|+|||+++++ +..++.+.+||..+++.......+....  ...........+
T Consensus        95 ------~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (426)
T d1hzua2          95 ------PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI  168 (426)
T ss_dssp             ------CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred             ------eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEE
Confidence                  22222222    2234556677889998755 4578999999999988877665543221  112222334555


Q ss_pred             EEEecCCCCEEEEEeC-CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCe------
Q 019405          220 AFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK------  291 (341)
Q Consensus       220 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~------  291 (341)
                      .+  ++++..++.... .+.+.+++.............+...+..+.|+|++++++++.. +..+.+++..+++      
T Consensus       169 ~~--s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         169 IA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EE--CSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EE--CCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            66  667766665443 4567777766655434445567778899999999988777653 3446666655433      


Q ss_pred             ------------------------------------------------EEeEEeccccCceeEEEecCCCCEEEE-----
Q 019405          292 ------------------------------------------------LLGCFIGKCSGSIRSIARHPTLPIIAS-----  318 (341)
Q Consensus       292 ------------------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~s-----  318 (341)
                                                                      ....+.+| ...+..++|+|++++|+.     
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS-SSCCCCEECCTTCSEEEECCTTC
T ss_pred             cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC-CCceeEEEcCCCCceEEEeecCC
Confidence                                                            33345555 677899999999999994     


Q ss_pred             --EeCCCcEEEEEcCCCceeeee
Q 019405          319 --CGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       319 --~~~dg~v~iwd~~~~~~~~~~  339 (341)
                        ++.|++|++||++++++..++
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEE
T ss_pred             CCcccCCEEEEEECCCCCcCeEE
Confidence              567889999999998876553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.6e-17  Score=136.71  Aligned_cols=287  Identities=9%  Similarity=0.026  Sum_probs=181.0

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEE-EccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAV-ARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+++..++.|++|++...  +..++++.+ ++...+..++|++|++    +|++ +..|+.|++|++.......+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~--~~l~~~~~~-~~~~~v~~la~spDG~----~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE--GALTLTQVV-DVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEE-ECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCC--CCeEEEEEE-cCCCCEeEEEEeCCCC----EEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            578889999999999865  433444444 5678889999998877    7754 5568999999998665444333221


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEc-ccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~  174 (341)
                      .     ....+..+.+.+..+        .++++. .++.+.+|+......       ........+...+.++.++|++
T Consensus        80 ~-----~~~~p~~l~~spDg~--------~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          80 A-----LPGSLTHISTDHQGQ--------FVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             E-----CSSCCSEEEECTTSS--------EEEEEETTTTEEEEEEEETTEE-------EEEEEEECCCTTBCCCEECTTS
T ss_pred             c-----cCCCceEEEEcCCCC--------EEeecccCCCceeeeccccccc-------eecccccCCCccceEEEeeecc
Confidence            1     123344566555544        566655 567888888754321       1122223345667889999999


Q ss_pred             CEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCceeE
Q 019405          175 KFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPVM  252 (341)
Q Consensus       175 ~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~  252 (341)
                      ++++.++. +..|.+|+..+.............   .........++|  ++++..++.. ...+...+|+.........
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~g~~p~~i~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVF--HPNEQYAYCVNELNSSVDVWELKDPHGNIE  214 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeee---eecCCCccEEEE--eccceeEEeeccccCceEEEeeccccccee
Confidence            98887664 467999998764332211110000   001133567888  7788777654 4566788888765332121


Q ss_pred             ---EEEe------cCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEecc--ccCceeEEEecCCCCEEEEEe
Q 019405          253 ---SFDF------RETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       253 ---~~~~------~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~  320 (341)
                         ....      .......++++++++++++. ..++.+.+|++...........+  ....+..++|+|||++|++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred             eeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence               2211      22346678899999876654 55788999988755332222211  145678999999999877665


Q ss_pred             -CCCcEEEE--EcCCCce
Q 019405          321 -LDSYLRFW--DIKTRQL  335 (341)
Q Consensus       321 -~dg~v~iw--d~~~~~~  335 (341)
                       .++.|++|  |.++|++
T Consensus       295 ~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         295 QKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTTCEEEEEEEETTTTEE
T ss_pred             CCCCeEEEEEEECCCCcE
Confidence             56889999  5566654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.82  E-value=6.4e-17  Score=131.07  Aligned_cols=229  Identities=13%  Similarity=0.119  Sum_probs=172.0

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecccc
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~~  146 (341)
                      .++++.|++|.|||+++++.+.++...         .....+++.+..+        .+ +++..++.+.+|++....  
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g---------~~p~~va~spdG~--------~l~v~~~~~~~i~v~d~~t~~--   65 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGT--------KVYVANAHSNDVSIIDTATNN--   65 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSS--------EEEEEEGGGTEEEEEETTTTE--
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC---------CCceEEEEeCCCC--------EEEEEECCCCEEEEEECCCCc--
Confidence            456788999999999999988888752         3455666554444        44 677789999999986443  


Q ss_pred             cccCCceEEEEEeecCCceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecC
Q 019405          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (341)
Q Consensus       147 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (341)
                            .+..+.  .......+.+++++..++ ++..++.+.+|+..+++....+..+          ....++.|  +|
T Consensus        66 ------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~  125 (301)
T d1l0qa2          66 ------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--SP  125 (301)
T ss_dssp             ------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--CT
T ss_pred             ------eeeeee--ccccccccccccccccccccccccceeeecccccceeeeecccc----------ccceEEEe--ec
Confidence                  344443  345678899999998655 4556789999999998888777654          23677888  88


Q ss_pred             CCCEEE-EEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC-CCEEEEECCCCeEEeEEeccccCc
Q 019405          226 DHRKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTGKLLGCFIGKCSGS  303 (341)
Q Consensus       226 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~  303 (341)
                      ++..++ ++..++.+.+|+..+... +..+.. ...+..++++|++..+++++.+ +.+.+|+....+....+..+  ..
T Consensus       126 dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  201 (301)
T d1l0qa2         126 DGKKLYVTNNGDKTVSVINTVTKAV-INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AA  201 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SE
T ss_pred             CCCeeeeeeccccceeeeeccccce-eeeccc-CCCceEEEeeccccceeeecccccccccccccceeeeeccccc--CC
Confidence            888765 555688899999998653 555554 4567899999999888877765 66778888877777776653  56


Q ss_pred             eeEEEecCCCCEEEEEe---CCCcEEEEEcCCCceeeee
Q 019405          304 IRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       304 i~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~  339 (341)
                      +..++|++++..++.++   .++.|++||+.+++++.++
T Consensus       202 ~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             cceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence            78899999999776654   3468999999999988765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.4e-17  Score=139.80  Aligned_cols=205  Identities=12%  Similarity=0.053  Sum_probs=143.9

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++++.+.||+|.|||..+++++..+..+         ..+..+.+.+..+        ++++++.|+.+.+|++......
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g---------~~~~~v~fSpDG~--------~l~~~s~dg~v~~~d~~t~~~~   96 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGR--------YLFVIGRDGKVNMIDLWMKEPT   96 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSC--------EEEEEETTSEEEEEETTSSSCC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC---------CCeeEEEECCCCC--------EEEEEcCCCCEEEEEeeCCCce
Confidence            3688999999999999999999999863         3455565555444        8888999999999998643311


Q ss_pred             cccCCceEEEEEe--ecCCceEEEEecCCCCEE-EEeeCCCeEEEEECCCCceeeecCCCCCC--ccCccCCeeeeEEEE
Q 019405          147 AESSCSTVKSWNV--CASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLGIFTPTWFTSAAF  221 (341)
Q Consensus       147 ~~~~~~~v~~~~~--~~~~~i~~~~~~~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~  221 (341)
                            .+.....  .+.+.+.+..|+|||++| ++++.++.|++||..+++.+..+..+...  ............+.+
T Consensus        97 ------~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2          97 ------TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             ------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             ------EEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE
Confidence                  1111111  122345556778899976 67888999999999999988776654322  112223345667788


Q ss_pred             EecCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CCCEEEEECCCCeEEeEE
Q 019405          222 LSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCF  296 (341)
Q Consensus       222 ~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~  296 (341)
                        ++++..+ ++...++.|.+||..+.+......-.+......++|+|+|+++++++. ++.+.++|..+++.+..+
T Consensus       171 --s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         171 --SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             --CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             --CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence              7888765 456678999999998765422222235567889999999998877765 567889998877665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=2e-16  Score=132.34  Aligned_cols=277  Identities=9%  Similarity=-0.066  Sum_probs=165.1

Q ss_pred             CCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchheeec
Q 019405           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN   93 (341)
Q Consensus        24 g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~   93 (341)
                      +.+.+|+....     +++.++..+..+  .++|++|++    +|+++.          .++.|.+||..+++.+..+..
T Consensus        47 ~~v~v~D~~tg-----~~~~~~~~~~~~--~~a~SpDG~----~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  115 (373)
T d2madh_          47 IQQWVLDAGSG-----SILGHVNGGFLP--NPVAAHSGS----EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL  115 (373)
T ss_pred             ceEEEEECCCC-----CEEEEEeCCCCc--cEEEcCCCC----EEEEEeecCCcccccccceEEEEEECCCCcEEEEEec
Confidence            34555554443     666666544333  577887777    777764          468899999999998877765


Q ss_pred             cCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCC
Q 019405           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (341)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~  173 (341)
                      +....... ......+.+.+..+.      ..+.....++.+.+|+.....        .     ..+.....++.++|+
T Consensus       116 ~~~~~~~~-~~~~~~~~~s~dg~~------~~v~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~s~~  175 (373)
T d2madh_         116 PDAPRFDV-GPYSWMNANTPNNAD------LLFFQFAAGPAVGLVVQGGSS--------D-----DQLLSSPTCYHIHPG  175 (373)
T ss_pred             CCcceeEe-ccCCCcEEEEeCCCc------EEEEEEcCCCceEEeeccCCe--------E-----EEEeccceeEEEecC
Confidence            32111000 000111222222220      011222233444455432211        1     112234567888998


Q ss_pred             CCEE-EEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce-e
Q 019405          174 EKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-V  251 (341)
Q Consensus       174 ~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~  251 (341)
                      ++.+ ++.+.|+.+.+|+...++.............   .........+  .+++ .++..+.++.+.+|+....... .
T Consensus       176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA---QNLLTQPAQA--NKSG-RIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC---ccceeeeEEE--CCCc-eEEEecCCceEEEEEcCCCeEEEE
Confidence            8654 6788899999999988776655443211100   1112233344  5555 4455567889999998765421 1


Q ss_pred             EEEEec----------CCCeEEEEEcCCCceE----------EEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          252 MSFDFR----------ETPIKAVAEEPDSFNI----------YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       252 ~~~~~~----------~~~v~~~~~~~~~~~l----------~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      .....+          ......+++++++..+          ++...++.+.+||..+++.+..+..  ...+..++|+|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~sp  327 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQ  327 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC--CCCeeEEEECC
Confidence            111111          1223345566665544          4455667899999999999888764  56789999999


Q ss_pred             CCC--EEEEEeCCCcEEEEEcCCCceeeee
Q 019405          312 TLP--IIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       312 ~~~--~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ||+  ++++++.|+.|++||+.+|+.++++
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            998  4568899999999999999999886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.6e-17  Score=135.98  Aligned_cols=272  Identities=15%  Similarity=0.060  Sum_probs=164.9

Q ss_pred             CCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEE----------ccCCeEEEeeCCCCcchheee
Q 019405           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        23 ~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      ++.+.+|+....     +++.++..+  ....++||+|++    +|+++          ..|+.|++||..+++.+..+.
T Consensus        27 ~~~v~v~D~~tg-----~~~~~~~~g--~~~~~a~SpDg~----~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~   95 (355)
T d2bbkh_          27 VTQQFVIDGEAG-----RVIGMIDGG--FLPNPVVADDGS----FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE   95 (355)
T ss_dssp             SEEEEEEETTTT-----EEEEEEEEC--SSCEEEECTTSS----CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             cCeEEEEECCCC-----cEEEEEECC--CCCceEEcCCCC----EEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe
Confidence            445777776654     566566433  333678887777    67654          347899999999999888776


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEE--cccceeEEEEeeecccccccCCceEEEEEeec------CCc
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGT  164 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~------~~~  164 (341)
                      .+...... .......+.+.+...        .++.+  +.+..+.+|+.....        .+.......      ...
T Consensus        96 ~~~~~~~~-~~~~~~~~~~s~dg~--------~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  158 (355)
T d2bbkh_          96 LPDAPRFL-VGTYPWMTSLTPDGK--------TLLFYQFSPAPAVGVVDLEGKA--------FKRMLDVPDCYHIFPTAP  158 (355)
T ss_dssp             ETTCCCCC-BSCCGGGEEECTTSS--------EEEEEECSSSCEEEEEETTTTE--------EEEEEECCSEEEEEEEET
T ss_pred             cCCcceee-cCCCCceEEEecCCC--------eeEEecCCCCceeeeeecCCCc--------EeeEEecCCcceEeecCC
Confidence            54322211 112222334433333        44443  345667777764333        222222111      012


Q ss_pred             eEEEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          165 IAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      ...+.++++++.++.. ..++.+.+++.......              +...+....+  .+++..++.++.++.+++|+
T Consensus       159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~  222 (355)
T d2bbkh_         159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE--------------DEFLINHPAY--SQKAGRLVWPTYTGKIHQID  222 (355)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT--------------TSCBCSCCEE--ETTTTEEEEEBTTSEEEEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCeEEEEecccccce--------------ecceeeeccc--cCCCCeEEEecCCCeEEEEe
Confidence            2234455555544432 22333444443322111              1122444566  56777888889999999999


Q ss_pred             cCCCCcee-EEEEecC----------CCeEEEEEcCCCceEEEEeCC----------CCEEEEECCCCeEEeEEeccccC
Q 019405          244 TSAQRRPV-MSFDFRE----------TPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCSG  302 (341)
Q Consensus       244 ~~~~~~~~-~~~~~~~----------~~v~~~~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~  302 (341)
                      +..+.... .....+.          .....+++++++..++....+          ..|.+||..+++.+..+..  ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~  300 (355)
T d2bbkh_         223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GH  300 (355)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EE
T ss_pred             cCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--CC
Confidence            98765311 1122111          223458899999888776543          3599999999999888875  35


Q ss_pred             ceeEEEecCCCC--EEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          303 SIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       303 ~i~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      .+.+++|+|||+  ++++++.|+.|++||+++++.++++.
T Consensus       301 ~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         301 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            689999999997  45677789999999999999998863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=2e-16  Score=130.07  Aligned_cols=234  Identities=12%  Similarity=0.048  Sum_probs=161.0

Q ss_pred             ceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeecc
Q 019405           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK  144 (341)
Q Consensus        66 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~  144 (341)
                      +||++++.|++|+|||+++++.+.++....      ....+..+++.+...        .+ ++++.++.+.+||+...+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~------~~~~~~~i~~spDg~--------~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIAD------AGPTPMVPMVAPGGR--------IAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT------CTTCCCCEEECTTSS--------EEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCC------CCCCccEEEECCCCC--------EEEEEECCCCeEEEEECCCCc
Confidence            489999999999999999999888887531      123344555544433        44 677889999999986544


Q ss_pred             cccccCCceEEEEEeec----CCceEEEEecCCCCEEEEee------------CCCeEEEEECCCCceeeecCCCCCCcc
Q 019405          145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (341)
Q Consensus       145 ~~~~~~~~~v~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~~~~~  208 (341)
                              .+.......    ...+..++++|++++++++.            .+..+.+||..+++....+...     
T Consensus        68 --------~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----  134 (337)
T d1pbyb_          68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----  134 (337)
T ss_dssp             --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred             --------EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-----
Confidence                    333333221    12345789999999998775            3567899999998888777653     


Q ss_pred             CccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCC------------------
Q 019405          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS------------------  270 (341)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------  270 (341)
                           ..+..++|  +|+++++++++.  .+.+||..+++. ...+..+... ....++|++                  
T Consensus       135 -----~~~~~~~~--s~dg~~l~~~~~--~~~~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (337)
T d1pbyb_         135 -----RQITMLAW--ARDGSKLYGLGR--DLHVMDPEAGTL-VEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFY  203 (337)
T ss_dssp             -----SSCCCEEE--CTTSSCEEEESS--SEEEEETTTTEE-EEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred             -----CCceEEEE--cCCCCEEEEEcC--CcceeeeecCcE-EEEeecCCcc-ccceecCCcceeeccccccceeeeeee
Confidence                 33677889  899999999864  477899988653 5544432211 111122221                  


Q ss_pred             ------ceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          271 ------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       271 ------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                            ..+..+..++.+.+||..+++.......++...+..+.++|++.+++.+  ++.|++||+.+++.+.++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE
Confidence                  1112223345689999998876654433337788889999999988766  588999999999988765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=2e-16  Score=130.66  Aligned_cols=241  Identities=15%  Similarity=0.096  Sum_probs=158.9

Q ss_pred             CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (341)
Q Consensus        62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~  141 (341)
                      ++++++|++++.|++|.|||+.+++.+.++..       ++.....++.+.+....       .++++..++.+.+|++.
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-------~~~~~p~~l~~spDG~~-------l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRT-------AYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSE-------EEEEETTTTEEEEEETT
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc-------CCCCCcceEEECCCCCE-------EEEEECCCCcEEEEeCc
Confidence            45566999999999999999999999888775       23344556666555441       45677789999999986


Q ss_pred             ecccccccCCceEEEEEeecC-----CceEEEEecCCCCEEEEee------------CCCeEEEEECCCCceeeecCCCC
Q 019405          142 VTKVSAESSCSTVKSWNVCAS-----GTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~~~~~-----~~i~~~~~~~~~~~l~~~~------------~d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                      ..+        .+........     ..+..++++|||+++++++            .++.+.+||..+++....+....
T Consensus        71 t~~--------~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  142 (346)
T d1jmxb_          71 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  142 (346)
T ss_dssp             TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             cCe--------eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee
Confidence            543        2223322111     1345789999999988765            46778889888766554333211


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce------------
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN------------  272 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------  272 (341)
                             .+..+..+.+  ++++..+++   ++.+.+|+..+++. +..+..+. ....+.++|++..            
T Consensus       143 -------~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  208 (346)
T d1jmxb_         143 -------MPRQVYLMRA--ADDGSLYVA---GPDIYKMDVKTGKY-TVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFS  208 (346)
T ss_dssp             -------CCSSCCCEEE--CTTSCEEEE---SSSEEEECTTTCCE-EEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             -------ccCceEEEEe--cCCCEEEEe---CCcceEEEccCCCE-EEEEecCC-CccceEEeccccEEEEEecCCCceE
Confidence                   1122444555  566655544   34689999987664 55554332 2333444444432            


Q ss_pred             --------------EEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 019405          273 --------------IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (341)
Q Consensus       273 --------------l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  338 (341)
                                    ++++..+..+.+||..++.........+...+..+.+++++.+++.... +.|++||..+++.+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~  287 (346)
T d1jmxb_         209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKA  287 (346)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEE
T ss_pred             eeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEE
Confidence                          2333445568888988887655544333778899999999988877754 5799999999998876


Q ss_pred             e
Q 019405          339 V  339 (341)
Q Consensus       339 ~  339 (341)
                      +
T Consensus       288 ~  288 (346)
T d1jmxb_         288 A  288 (346)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.62  E-value=6.8e-13  Score=110.53  Aligned_cols=254  Identities=9%  Similarity=0.030  Sum_probs=146.8

Q ss_pred             CCCCeEEEEEecCccCccceeeeccCCCCCc-------eeEEEeccCCCCCceEEE--EccCCeEEEeeCCCCcchheee
Q 019405           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSN-------CVLAASIDDSQNDPLLAV--ARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        22 ~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      .+|.+.+|++...     +++..+..+....       ..++|++++.    .+++  ...++.+.+|+....+......
T Consensus        95 ~~~~v~v~D~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
T d2madh_          95 RTDYVEVFDPVTF-----LPIADIELPDAPRFDVGPYSWMNANTPNNA----DLLFFQFAAGPAVGLVVQGGSSDDQLLS  165 (373)
T ss_pred             cceEEEEEECCCC-----cEEEEEecCCcceeEeccCCCcEEEEeCCC----cEEEEEEcCCCceEEeeccCCeEEEEec
Confidence            3455677777665     4444443333322       2356666665    3433  3456778888887665543332


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEE-EE-eecCCceEEEEe
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WN-VCASGTIAFSKV  170 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~-~~-~~~~~~i~~~~~  170 (341)
                      .            ..+..+.+....       .+++.+.|+.+.+|+........     .... .. .........+.+
T Consensus       166 ~------------~~~~~~s~~g~~-------~~v~~~~dg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  221 (373)
T d2madh_         166 S------------PTCYHIHPGAPS-------TFYLLCAQGGLAKTDHAGGAAGA-----GLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             c------------ceeEEEecCCCc-------EEEEEcCCCeEEEEEcCCceeeE-----EEeeeccccCccceeeeEEE
Confidence            2            223333333331       67888999999999876443211     0000 00 001112334455


Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceeeecC--CCCCCccC-ccCCeeeeEEEEE--------ecCCCCEEEEEeCCCeE
Q 019405          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAK--PPPKNSLG-IFTPTWFTSAAFL--------SIDDHRKFVAGTNDHQV  239 (341)
Q Consensus       171 ~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~~~-~~~~~~v~~~~~~--------~~~~~~~l~~~~~d~~i  239 (341)
                      ++++.+ +..+.++.+.+|+..+........  ........ ...+.....+++.        ....+..++....++.+
T Consensus       222 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v  300 (373)
T d2madh_         222 NKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             CCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeE
Confidence            555544 455678899999988765332211  11100000 0001112223330        02334455566777899


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCce--EEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN--IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .+||..+++. +..+. +...+..++|+|||+.  +++++.|+.|++||+.+++.+.++..+ ....+.+++.++
T Consensus       301 ~~~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~-g~~P~~l~~~~~  372 (373)
T d2madh_         301 TSVTGLVGQT-SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL-GSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCcE-EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC-CCCCcEEEEecC
Confidence            9999998764 55554 5567899999999974  467889999999999999999999876 666677776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=9.1e-14  Score=115.03  Aligned_cols=224  Identities=10%  Similarity=0.069  Sum_probs=138.7

Q ss_pred             eeEEEeccCCCCCceEEEE--ccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEc
Q 019405           53 CVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (341)
                      ..++|++++.    +++++  +.+..+.+|+..+++.+..+...         ...  ........        ..++.+
T Consensus       109 ~~~~~s~dg~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~--------~~~~~~  165 (355)
T d2bbkh_         109 WMTSLTPDGK----TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---------DCY--HIFPTAPD--------TFFMHC  165 (355)
T ss_dssp             GGEEECTTSS----EEEEEECSSSCEEEEEETTTTEEEEEEECC---------SEE--EEEEEETT--------EEEEEE
T ss_pred             ceEEEecCCC----eeEEecCCCCceeeeeecCCCcEeeEEecC---------Ccc--eEeecCCc--------ceEEEc
Confidence            4567777666    66665  45678999999998887776642         111  11111111        455556


Q ss_pred             ccceeEEEEeeecccccccCCceEEEEEee-----cCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeec--CCC
Q 019405          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA--KPP  203 (341)
Q Consensus       131 ~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~--~~~  203 (341)
                      .|+...++.....        +.+..++..     +...+....+.+++..++.++.++.+++|++..++....-  ..+
T Consensus       166 ~dg~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  237 (355)
T d2bbkh_         166 RDGSLAKVAFGTE--------GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL  237 (355)
T ss_dssp             TTSCEEEEECCSS--------SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             CCCCEEEEEecCC--------CeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence            6666665554322        122333222     1223445667778888999999999999999876542211  111


Q ss_pred             CCCccC-ccCCeeeeEEEEEecCCCCEEEEEeCC----------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-
Q 019405          204 PKNSLG-IFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-  271 (341)
Q Consensus       204 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  271 (341)
                      ...... ...+.....+++  ++++..++....+          ..|.+||..+++. +..+..+ ..+.+++|+|+|+ 
T Consensus       238 ~~~~~~~~~~p~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~~~-~~~~~~a~spDG~~  313 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAY--HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMG-HEIDSINVSQDEKP  313 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEE--ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEE-EEECEEEECCSSSC
T ss_pred             ccceEeeeeeccceEEEEE--eCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-EEEecCC-CCEEEEEEcCCCCe
Confidence            100000 001122345677  7888887765543          3699999998764 6666533 4578999999997 


Q ss_pred             -eEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          272 -NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       272 -~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                       +++++..|+.|++||+++++.+.++..+ ...-..+.+.++
T Consensus       314 ~l~v~~~~d~~i~v~D~~tg~~~~~i~~~-G~~p~~i~~~d~  354 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTADM  354 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEECCCC
T ss_pred             EEEEEECCCCEEEEEECCCCCEEEEEeCc-CCCccEEEeCCC
Confidence             3456778999999999999999999865 444445554443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=7.9e-13  Score=108.16  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=154.3

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeecccccccccccee-EEEcccceeEEEEeeeccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV  145 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~~i~~~~~~~~  145 (341)
                      .++++..|++|+||++.+...+..++..      .+.+.+..+++.+..+        .| +++..++.+.+|++.....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~------~~~~~v~~la~spDG~--------~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKR--------YLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSS--------EEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE------cCCCCEeEEEEeCCCC--------EEEEEECCCCeEEEEEEeCCCC
Confidence            3577889999999999765444444321      1336677777766555        55 5556689999999864321


Q ss_pred             ccccCCceEEE-EEeecCCceEEEEecCCCCEEEEeeC-CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe
Q 019405          146 SAESSCSTVKS-WNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (341)
Q Consensus       146 ~~~~~~~~v~~-~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (341)
                             .... -.......+..++++|||++|++++. ++.|.+|+..............       +...+.++.+  
T Consensus        72 -------~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~--  135 (333)
T d1ri6a_          72 -------ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-------GLDGCHSANI--  135 (333)
T ss_dssp             -------CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-------CCTTBCCCEE--
T ss_pred             -------cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC-------CCccceEEEe--
Confidence                   2222 22234456778999999999988875 6789999887655443322111       1234677888  


Q ss_pred             cCCCCEEEEEe-CCCeEEEEEcCCCCceeEEE-----EecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCC----eE
Q 019405          224 IDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG----KL  292 (341)
Q Consensus       224 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~----~~  292 (341)
                      +|++++++.++ .+..|.+|+...........     .........++|++++..++... ..+...+|+....    ..
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            89999887776 45679999987654322111     11334567899999998877655 4566788876532    12


Q ss_pred             EeEEecc-----ccCceeEEEecCCCCEEEE-EeCCCcEEEEEcCCCce
Q 019405          293 LGCFIGK-----CSGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       293 ~~~~~~~-----~~~~i~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~  335 (341)
                      .......     .......+++++++++++. +..++.+.+|++.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC
Confidence            2222110     1345677899999986554 45677899998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=3.9e-13  Score=111.97  Aligned_cols=281  Identities=14%  Similarity=-0.026  Sum_probs=162.4

Q ss_pred             ecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEc----------cCCeEEEeeCCCCcchh
Q 019405           20 FDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRV   89 (341)
Q Consensus        20 ~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~   89 (341)
                      ...+|..++|-+... ++  +++.+...+...  .+++++|++    .|++++          .|+.|++||..+++.+.
T Consensus        40 ~~~~g~~~~~~~d~~-~~--~~~~~~~~~~~~--~~a~spDg~----~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~  110 (368)
T d1mdah_          40 AYFAGTTENWVSCAG-CG--VTLGHSLGAFLS--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             TTTCSSEEEEEEETT-TT--EEEEEEEECTTC--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             ccCCCcceEEEEeCC-CC--cEEEEEeCCCCC--cceECCCCC----EEEEEcccCccccccccCCeEEEEECCCCcEee
Confidence            456666666655443 33  455455433333  467887776    666643          47889999999999888


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEE-cccceeEEEEeeecccccccCCceEEEEEeecCCceEEE
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~  168 (341)
                      .+..+....... ......+.+.+..+        .++.+ ..++.+.+|++...+        .+..........+   
T Consensus       111 ~i~~p~~~~~~~-g~~p~~~a~SpDGk--------~l~va~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~---  170 (368)
T d1mdah_         111 DIELPDAPRFSV-GPRVHIIGNCASSA--------CLLFFLFGSSAAAGLSVPGAS--------DDQLTKSASCFHI---  170 (368)
T ss_dssp             EEEETTSCSCCB-SCCTTSEEECTTSS--------CEEEEECSSSCEEEEEETTTE--------EEEEEECSSCCCC---
T ss_pred             eecCCccceecc-cCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCc--------EeEEeeccCcceE---
Confidence            876532221111 11112344444433        55554 457899999886543        3333332211111   


Q ss_pred             EecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC
Q 019405          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (341)
Q Consensus       169 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  248 (341)
                       .......++..+.||.+.++++...............   ..+...+..+.+  .+++..+.+  ..+.+++++.....
T Consensus       171 -~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~g~~~~~--~~~~v~~~~~~~~~  242 (368)
T d1mdah_         171 -HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT---GAQNCSSQAAQA--NYPGMLVWA--VASSILQGDIPAAG  242 (368)
T ss_dssp             -EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC---TTSCBCSCCEEE--TTTTEEEEC--BSSCCEEEECCSSC
T ss_pred             -ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccc---cccccceeeccc--ccCcEEEEe--cCCCEEEEeecCCc
Confidence             1112345666677888888877654332221111100   001122344455  566654443  34566666665533


Q ss_pred             ceeEEE--Eec----------CCCeEEEEEcCCCceEEEEeCC---------CCEEEEECCCCeEEeEEeccccCceeEE
Q 019405          249 RPVMSF--DFR----------ETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (341)
Q Consensus       249 ~~~~~~--~~~----------~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~~~  307 (341)
                      . ....  ..+          ......++++|++..+++...+         ..|.+||..+++.+..+..  ...+.++
T Consensus       243 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~  319 (368)
T d1mdah_         243 A-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAI  319 (368)
T ss_dssp             C-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEE
T ss_pred             e-EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC--CCceeEE
Confidence            2 1111  000          0122357888988777665332         3499999999999888764  4578999


Q ss_pred             EecCCCC--EEEEEeCCCcEEEEEcCCCceeeeec
Q 019405          308 ARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       308 ~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~  340 (341)
                      +|+|||+  .++++..|+.|++||..+|+.+.++.
T Consensus       320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            9999997  35677789999999999999998763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=1.3e-12  Score=108.86  Aligned_cols=281  Identities=12%  Similarity=0.033  Sum_probs=159.7

Q ss_pred             ceeeeecCCCCeEEEEEecCccCccceeeeccC------------------------------CCCCceeEEEeccCCCC
Q 019405           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD------------------------------PHSSNCVLAASIDDSQN   64 (341)
Q Consensus        15 ~~~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~------------------------------~~~~~~~~~~s~~~~~~   64 (341)
                      ..+++++.+|.+.+|++...     +++.++.-                              |.....    ..+..|+
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~-----r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s----~t~gtpD   82 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSM-----RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHIS----MTDGRYD   82 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTT-----EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEE----EETTEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCC-----cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcc----eecccCC
Confidence            45678889999999998765     22222110                              111111    2344566


Q ss_pred             CceEEE-EccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEE------
Q 019405           65 DPLLAV-ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM------  137 (341)
Q Consensus        65 ~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i------  137 (341)
                      |++|.+ ...+++|.++|+++++....+..       +......++.+.+..+.       .++.+.....+.+      
T Consensus        83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~i-------P~g~gphgi~~spdg~t-------~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          83 GKYLFINDKANTRVARIRLDIMKTDKITHI-------PNVQAIHGLRLQKVPKT-------NYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEEC-------TTCCCEEEEEECCSSBC-------CEEEEEECSCEESSCSSSC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEeeEEec-------CCCCCccceEEeccCCE-------EEEEeccCCcccccCcccc
Confidence            668755 56789999999999988776654       22344555555543331       2333332222221      


Q ss_pred             EEeeeccc--ccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCC-------------------------------
Q 019405          138 RSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV-------------------------------  184 (341)
Q Consensus       138 ~~~~~~~~--~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------------------------------  184 (341)
                      ++......  ........-..|.+.-.+....+.++|+|+++++.+.+.                               
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence            00000000  000000011223333345667888899998887765432                               


Q ss_pred             ----------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEE-EEeCCCeEEEEEcCCCCc----
Q 019405          185 ----------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR----  249 (341)
Q Consensus       185 ----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~----  249 (341)
                                .+.+++....+.+..++..          .....+.+  +|+|++++ ++..+++|.+||+.+...    
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvg----------ksPhGv~v--SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~  296 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVP----------KNPHGLNT--SPDGKYFIANGKLSPTVSVIAIDKLDDLFED  296 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCB----------SSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCC----------CCccCceE--CCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence                      2222222222222222221          23566788  89999875 567789999999875221    


Q ss_pred             ---eeEEEEecC---CCeEEEEEcCCCceEEEEeCCCCEEEEECCC----------CeEEeEE-----eccccCceeEEE
Q 019405          250 ---PVMSFDFRE---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCF-----IGKCSGSIRSIA  308 (341)
Q Consensus       250 ---~~~~~~~~~---~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~~i~~~~  308 (341)
                         +...+.++.   -.....+|.++|..+.+.+.|..|..|++..          ...+..+     .+| ...+.+..
T Consensus       297 ~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~~~~t  375 (441)
T d1qnia2         297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHASLTES  375 (441)
T ss_dssp             SSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTS
T ss_pred             cCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-Cccccccc
Confidence               111122211   1234458999998888889999999999741          1234444     455 67778888


Q ss_pred             ecCCCCEEEEE---eCCC----------cEEEEEcC
Q 019405          309 RHPTLPIIASC---GLDS----------YLRFWDIK  331 (341)
Q Consensus       309 ~~~~~~~l~s~---~~dg----------~v~iwd~~  331 (341)
                      ++|||++|+++   |.|+          +-.+.|+.
T Consensus       376 ~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~  411 (441)
T d1qnia2         376 RDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDIS  411 (441)
T ss_dssp             TTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECS
T ss_pred             cCCCCcEEEecCccccccCcCCCCCCCccceeEEec
Confidence            99999999999   5564          33567775

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=2.5e-12  Score=106.99  Aligned_cols=215  Identities=9%  Similarity=-0.012  Sum_probs=126.5

Q ss_pred             eeEEEeccCCCCCceEEEEc-cCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           53 CVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      ..++|++|++    +|+++. .++.|.+||+.+++.+..+......            ...+...       ..+++.+.
T Consensus       127 ~~~a~SpDGk----~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~------------~~~~~~~-------~~~v~~~~  183 (368)
T d1mdah_         127 HIIGNCASSA----CLLFFLFGSSAAAGLSVPGASDDQLTKSASCF------------HIHPGAA-------ATHYLGSC  183 (368)
T ss_dssp             TSEEECTTSS----CEEEEECSSSCEEEEEETTTEEEEEEECSSCC------------CCEEEET-------TEEECCCC
T ss_pred             cceEECCCCC----EEEEEeCCCCeEEEEECCCCcEeEEeeccCcc------------eEccCCC-------ceEEEEcC
Confidence            3567887776    777765 5799999999999888777653111            1112212       16777788


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc--cC
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--LG  209 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~--~~  209 (341)
                      ||.+.++++............  .. ...+...+....+.+++..+.+.  ++.+.++++..+.............  ..
T Consensus       184 Dg~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  258 (368)
T d1mdah_         184 PASLAASDLAAAPAAAGIVGA--QC-TGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKA  258 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCC--CS-CTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred             CCCEEEEEecCCceeeeeeec--cc-ccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeee
Confidence            898888876543321000000  00 00011223455666777665543  4556677766544332221111000  00


Q ss_pred             -ccCCeeeeEEEEEecCCCCEEEEEeCC---------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCce--EEEEe
Q 019405          210 -IFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN--IYIGN  277 (341)
Q Consensus       210 -~~~~~~v~~~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~g~  277 (341)
                       ...+.....+++  ++++..++....+         ..|.+||..+++. +..+... ..+..++|+|||+.  ++++.
T Consensus       259 ~~~~~~g~~~~a~--~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~~~~-~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         259 DNFRSAGFQMVAK--LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             TTEEECSSSCEEE--ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEET
T ss_pred             eeecCCCceeEEE--cCCCCEEEEEecCCCceeecCCceEEEEECCCCcE-eEEecCC-CceeEEEECCCCCEEEEEEeC
Confidence             001112334667  6777776654322         3589999998764 5555433 46888999999963  45667


Q ss_pred             CCCCEEEEECCCCeEEeEEecc
Q 019405          278 GSGDLASVDIRTGKLLGCFIGK  299 (341)
Q Consensus       278 ~dg~i~iwd~~~~~~~~~~~~~  299 (341)
                      .++.|++||..+++.+.+++..
T Consensus       335 ~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         335 GTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             TTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCeEEEEECCCCCEEEEEECC
Confidence            7899999999999999988754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=5.7e-11  Score=102.01  Aligned_cols=139  Identities=9%  Similarity=-0.067  Sum_probs=79.3

Q ss_pred             cCCCCeEEEEEecCccCcccee--eeccCCCCCceeEEEeccCCCCCceEEEEcc---------CCeEEEeeCCCCcchh
Q 019405           21 DSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARK---------NGLTDILNPLNGDLRV   89 (341)
Q Consensus        21 ~~~g~i~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~   89 (341)
                      ..+|.+.+|++......  .++  .++..+...+..++||+|+.    +|+.++.         ++.+.|||+++++.. 
T Consensus        33 ~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~----~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-  105 (470)
T d2bgra1          33 KQENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQ----FILLEYNYVKQWRHSYTASYDIYDLNKRQLI-  105 (470)
T ss_dssp             ESSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSS----EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-
T ss_pred             EcCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCC----EEEEEECCcceeeeccCceEEEEECCCCccc-
Confidence            35778888888876211  111  24555677888889888776    8888743         577899999887643 


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCc-eEEEEEee--------
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVC--------  160 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~-~v~~~~~~--------  160 (341)
                      .+..        +.+.+....|.+...        .++. ..++.+.+|++..........++ .-..++..        
T Consensus       106 ~l~~--------~~~~~~~~~~SPDG~--------~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1         106 TEER--------IPNNTQWVTWSPVGH--------KLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             CSSC--------CCTTEEEEEECSSTT--------CEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             cccc--------CCccccccccccCcc--------eeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            3333        234455454444333        4444 46778888876544321100000 00011100        


Q ss_pred             cCCceEEEEecCCCCEEEEeeCC
Q 019405          161 ASGTIAFSKVDISEKFSLFGGKG  183 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d  183 (341)
                      ..+....+.|+|||+.|+....|
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ecCCccccEECCCCCccceeEec
Confidence            11234557788998888876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=3.1e-09  Score=87.69  Aligned_cols=289  Identities=10%  Similarity=-0.011  Sum_probs=152.1

Q ss_pred             eeeee--cCCCCeEEEEEecCccCccceeeecc-CCCCCceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheee
Q 019405           16 RALTF--DSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (341)
Q Consensus        16 ~~~~~--~~~g~i~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~   92 (341)
                      .++.|  ...|.|.++....+ ++..+++.... ........++|+++.+    +|.++. .+.+..|.+.....+....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~-~~~l~~~~~~~~~~~~~~s~la~s~d~~----~ly~~~-~~~~~~~~i~~~~~~~~~~   77 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEPISWMTFDHERK----NIYGAA-MKKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCCCSEEEECTTSS----EEEEEE-BTEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCC-CCeEEEeeeeeccCCCCCCEEEEcCCCC----EEEEEe-CCcEEEEEEeCCCCeEEEe
Confidence            35555  45667888877776 44333433321 2344456788887776    666654 5678888765322122111


Q ss_pred             ccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc--cceeEEEEeeeccc--------ccccCCceEEEEEeecC
Q 019405           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKV--------SAESSCSTVKSWNVCAS  162 (341)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~i~~~~~~~~--------~~~~~~~~v~~~~~~~~  162 (341)
                      .+.      .......+.+.+....       .+++...  .+.+..+.+.....        ......+.+........
T Consensus        78 ~~~------~~~~p~~v~~~~~~~~-------~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  144 (365)
T d1jofa_          78 SHP------IGGHPRANDADTNTRA-------IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN  144 (365)
T ss_dssp             EEE------CCSSGGGGCTTSCCEE-------EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTT
T ss_pred             eec------CCCCcEEEEECCCCCE-------EEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCC
Confidence            110      0011111111111110       1222222  23333332211100        00011112222222233


Q ss_pred             CceEEEEecCCCCEEEEeeC-CCeEEEEECCCC-ceee--ecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCC
Q 019405          163 GTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKC-EKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDH  237 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~-d~~v~i~d~~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~  237 (341)
                      ..+.++.|+|+|++++++.. ...|.+|+.... ....  ......       .......++|  +|+++++.+. ..++
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-------~g~gPr~i~f--~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLYALMEAGN  215 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEEEEETTTT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-------CCCceEEEEE--CCCCceEEEeccCCC
Confidence            45789999999998887754 357888876532 2221  111111       0134778899  8999987554 4678


Q ss_pred             eEEEEEcCCCCce-eEEEEe-----------------cCCCeEEEEEcCCCceEEEEeC-C-----CCEEEEECCCCeEE
Q 019405          238 QVRLYDTSAQRRP-VMSFDF-----------------RETPIKAVAEEPDSFNIYIGNG-S-----GDLASVDIRTGKLL  293 (341)
Q Consensus       238 ~i~iwd~~~~~~~-~~~~~~-----------------~~~~v~~~~~~~~~~~l~~g~~-d-----g~i~iwd~~~~~~~  293 (341)
                      +|.+|++...+.. +.....                 +......+.++|+|++|+++.. +     +.|..|++.....+
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~  295 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI  295 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce
Confidence            9999998765421 111111                 0112457899999999988753 2     23777776543211


Q ss_pred             e---EE---eccccCceeEEEecC-CCCEEEEE-eCCCcEEEEEcCCC
Q 019405          294 G---CF---IGKCSGSIRSIARHP-TLPIIASC-GLDSYLRFWDIKTR  333 (341)
Q Consensus       294 ~---~~---~~~~~~~i~~~~~~~-~~~~l~s~-~~dg~v~iwd~~~~  333 (341)
                      .   .+   ... ......++++| +|++|+.+ ..++.|.+|+++..
T Consensus       296 ~~~~~~~~~~~~-G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         296 EKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEeEeeEEEcC-CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1   11   111 34567899998 78877665 46789999987643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=5.2e-09  Score=82.99  Aligned_cols=246  Identities=10%  Similarity=0.100  Sum_probs=154.2

Q ss_pred             eeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEE-Ecc
Q 019405           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTT  131 (341)
Q Consensus        53 ~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~  131 (341)
                      .-+++++++.    ++++-..++.|++||.+ |+.+..+.......  ........+........       .+++ ...
T Consensus        26 ~gvavd~dg~----i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~-------~~~~~~~~   91 (279)
T d1q7fa_          26 SGVAVNAQND----IIVADTNNHRIQIFDKE-GRFKFQFGECGKRD--SQLLYPNRVAVVRNSGD-------IIVTERSP   91 (279)
T ss_dssp             EEEEECTTCC----EEEEEGGGTEEEEECTT-SCEEEEECCBSSST--TCBSSEEEEEEETTTTE-------EEEEECGG
T ss_pred             cEEEEcCCCC----EEEEECCCCEEEEEeCC-CCEEEEecccCCCc--ccccccccccccccccc-------cceeccCC
Confidence            4566665554    66666778899999974 77666553321110  00111222332222221       2322 233


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCcc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~  211 (341)
                      ++.+..++.         ....+..+..........+++.+++.++++....+.+.+++.. ++.+..+....       
T Consensus        92 ~~~i~~~~~---------~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~-------  154 (279)
T d1q7fa_          92 THQIQIYNQ---------YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------  154 (279)
T ss_dssp             GCEEEEECT---------TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------
T ss_pred             ccccccccc---------cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccc-------
Confidence            344444432         1223444444444556788999999988887777888888864 55555543221       


Q ss_pred             CCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeC-CCCEEEEECC
Q 019405          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIR  288 (341)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~  288 (341)
                      +......+++  .++++.+++....+.|++||... +. +..+..  .......+++.++|+++++-.. ++.|.+|+. 
T Consensus       155 ~~~~~~~i~~--d~~g~i~v~d~~~~~V~~~d~~G-~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-  229 (279)
T d1q7fa_         155 HLEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-  229 (279)
T ss_dssp             TCSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             cccccceeee--ccceeEEeeeccccceeeeecCC-ce-eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-
Confidence            1244677888  78888888888899999999764 32 555421  3345688999999987776544 446999985 


Q ss_pred             CCeEEeEEeccc-cCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCce
Q 019405          289 TGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (341)
Q Consensus       289 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  335 (341)
                      +|+.+..+.... ......|++.|+|.+++ ++.+..|++|......+
T Consensus       230 ~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         230 DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            688877775331 23578999999997655 45789999999887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.30  E-value=1.6e-11  Score=105.58  Aligned_cols=153  Identities=7%  Similarity=-0.040  Sum_probs=113.4

Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---------CC
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH  237 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~  237 (341)
                      .+.|.++++++..  .++.+.+||+.+++....+..+...    .+...|.++.|  +||+++|+.++.         ++
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD----EFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT----TSSSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh----hccCccceeEE--CCCCCEEEEEECCcceeeeccCc
Confidence            5678888887764  4678999999999877655544321    12355889999  999999998754         46


Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccc-----------------
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------------  300 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----------------  300 (341)
                      .+.+||+.+++  +..+..+...+..+.|||||+.||.. .++.+++|+..+++.......+.                 
T Consensus        93 ~~~l~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          93 SYDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EEEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEECCCCc--ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            78999999854  55677788899999999999999885 56789999999887654432211                 


Q ss_pred             cCceeEEEecCCCCEEEEEeCCCc-EEEEEc
Q 019405          301 SGSIRSIARHPTLPIIASCGLDSY-LRFWDI  330 (341)
Q Consensus       301 ~~~i~~~~~~~~~~~l~s~~~dg~-v~iwd~  330 (341)
                      .+....+.|+|||++|+....|.. +..|++
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCccccEECCCCCccceeEecCCcCceEEE
Confidence            123456889999999999876543 554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.29  E-value=9.4e-10  Score=91.52  Aligned_cols=235  Identities=9%  Similarity=-0.002  Sum_probs=144.8

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCC----------------------CCCceeeEeeeeccccccccccce
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP----------------------EDDGIVGLHLFKRQREESSSRSRT  125 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +++++.+|.|+||++.+++.++.+....+.....                      |.-...... ...+++      ..
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~-gtpDGr------~l   86 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD-GRYDGK------YL   86 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET-TEEEEE------EE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec-ccCCCC------EE
Confidence            6778899999999999998888776533222110                      001111111 111221      13


Q ss_pred             eEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCE--EEEeeCCC-----------------eE
Q 019405          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGGKGV-----------------EV  186 (341)
Q Consensus       126 l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~--l~~~~~d~-----------------~v  186 (341)
                      ++....+.++.+++++..+        ...+..+.+......++++|+++.  ++..+.+.                 .+
T Consensus        87 fV~d~~~~rVavIDl~t~k--------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMK--------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             EEEETTTTEEEEEETTTTE--------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCc--------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            4555677888898876443        445555656778899999999984  44443332                 23


Q ss_pred             EEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCC------------------------------
Q 019405          187 NVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------------------------------  236 (341)
Q Consensus       187 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------------------------------  236 (341)
                      ..+|..+.+..+++....          ....+.+  +|+++++++.+.+                              
T Consensus       159 ~~iD~~t~~v~~qI~v~~----------~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDG----------NLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             EEEETTTCSEEEEEEESS----------CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             EeecCccceeeEEEecCC----------CccceEE--CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence            457777777666554332          2556777  7888888777644                              


Q ss_pred             -----------CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-EEeCCCCEEEEECCCCeE--------EeEE
Q 019405          237 -----------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKL--------LGCF  296 (341)
Q Consensus       237 -----------~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~--------~~~~  296 (341)
                                 +.+.+++....+ .+..+..... ...+.++|||++++ ++..+++|.+||+++.+.        ...+
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~-v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESE-FTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCS-SEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             cCCCEEEeCCCCcEEEEcccCCc-eEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                       233333333322 2445554443 46799999999875 566799999999865221        0111


Q ss_pred             ecc--ccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          297 IGK--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       297 ~~~--~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .++  ..-.....+|.++|..+.+...|..|..|++.
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            111  01123446899999989999999999999974

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=1.3e-07  Score=73.96  Aligned_cols=156  Identities=7%  Similarity=-0.101  Sum_probs=105.7

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      .....++++++++++++-..+..+..++........ .....        ......+++  .++++++++...++.|..+
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~--------~~~p~~i~~--~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTG--------LNDPDGVAV--DNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCS--------CCSCCEEEE--CTTCCEEEEEGGGTEEEEE
T ss_pred             eecccccccccceeEeeccccccccccccccceeee-eeecc--------cCCcceeee--cCCCCEeeecccccccccc
Confidence            456789999999988877777778888765533222 11111        022467888  7889888888888999999


Q ss_pred             EcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCC
Q 019405          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (341)
Q Consensus       243 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d  322 (341)
                      |...... .......-.....+++.++|.++++....+.|..++...... ..+....-.....|+++++|.++++-..+
T Consensus       167 d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         167 EAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             CTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             cccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            9876432 221122334568899999998887777788898888754432 22221112456799999999988887777


Q ss_pred             CcEEEEEcC
Q 019405          323 SYLRFWDIK  331 (341)
Q Consensus       323 g~v~iwd~~  331 (341)
                      ++|+.++..
T Consensus       245 ~rI~~i~~~  253 (260)
T d1rwia_         245 DRVVKLTSL  253 (260)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEeCC
Confidence            777766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.06  E-value=9.3e-07  Score=70.52  Aligned_cols=236  Identities=9%  Similarity=-0.047  Sum_probs=145.7

Q ss_pred             ceeEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcc
Q 019405           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT  131 (341)
Q Consensus        52 ~~~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  131 (341)
                      +..+++++|+.    ++++...+++|..|+.. ++... +..        ......++++-+...        .+++...
T Consensus        30 ~e~iAv~pdG~----l~vt~~~~~~I~~i~p~-g~~~~-~~~--------~~~~~~gla~~~dG~--------l~v~~~~   87 (302)
T d2p4oa1          30 LENLASAPDGT----IFVTNHEVGEIVSITPD-GNQQI-HAT--------VEGKVSGLAFTSNGD--------LVATGWN   87 (302)
T ss_dssp             EEEEEECTTSC----EEEEETTTTEEEEECTT-CCEEE-EEE--------CSSEEEEEEECTTSC--------EEEEEEC
T ss_pred             cCCEEECCCCC----EEEEeCCCCEEEEEeCC-CCEEE-EEc--------CCCCcceEEEcCCCC--------eEEEecC
Confidence            34567776655    88888889999999975 43322 221        224566666544333        6777777


Q ss_pred             cceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCC-ccCc
Q 019405          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN-SLGI  210 (341)
Q Consensus       132 ~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~  210 (341)
                      ++.+..++.....      .....+.+.........+.+.++++++++-+.++.+..+|...+............ ....
T Consensus        88 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1          88 ADSIPVVSLVKSD------GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             TTSCEEEEEECTT------SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             CceEEEEEecccc------cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence            7777777764322      11223333344556788999999999998888899999998876543322211100 0001


Q ss_pred             cCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCce--eEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      ........+.+  . .+.++++.+..+.|..++.......  ...+. .......+++.++|.++++...++.|..++..
T Consensus       162 ~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         162 SVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             CCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             Ccccccccccc--c-CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            11133556666  3 3446667778889999987764321  12222 23445679999999988888889999999876


Q ss_pred             CCeEEeEE--eccccCceeEEEe---cCCCCEEEEEeC
Q 019405          289 TGKLLGCF--IGKCSGSIRSIAR---HPTLPIIASCGL  321 (341)
Q Consensus       289 ~~~~~~~~--~~~~~~~i~~~~~---~~~~~~l~s~~~  321 (341)
                       ++.....  ... -...++++|   ++|++.|..++.
T Consensus       238 -G~~~~~~~~~~~-~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         238 -RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             -CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             -CCEEEEEecCCC-CCCceEEEEcCCCCCCCEEEEECC
Confidence             4432222  222 345789999   678887765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.93  E-value=1e-06  Score=70.64  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=80.0

Q ss_pred             eeEEEEEecCCCC-----EEEEEeCCCeEEEEEcCCCCceeEE---EEe----cCCCeEEEEEcCCCceEEEEeCCCCEE
Q 019405          216 FTSAAFLSIDDHR-----KFVAGTNDHQVRLYDTSAQRRPVMS---FDF----RETPIKAVAEEPDSFNIYIGNGSGDLA  283 (341)
Q Consensus       216 v~~~~~~~~~~~~-----~l~~~~~d~~i~iwd~~~~~~~~~~---~~~----~~~~v~~~~~~~~~~~l~~g~~dg~i~  283 (341)
                      .+.++|  +++++     ++++-+..+.|..||+..... +..   +..    +....-.+++.++|++.++....+.|.
T Consensus       174 pNGi~~--~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         174 PNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             EEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTE-EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             eeeeEE--CCCCCcceeEEEEEeecccceEEeeccCccc-cceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            456788  44443     455556788899998765332 211   111    112345799999999888877889999


Q ss_pred             EEECCCCeEEeEEeccccCceeEEEecCCCC-EEEEEeCCCcEEEEEcC
Q 019405          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK  331 (341)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~v~iwd~~  331 (341)
                      +||.+.++.+..+..+ ....++++|.|+++ ++++.+.++.|..+++.
T Consensus       251 ~~dp~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEeCCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9999888877777665 56788999999987 55777788888888864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=3.3e-06  Score=65.65  Aligned_cols=111  Identities=14%  Similarity=-0.006  Sum_probs=75.9

Q ss_pred             ceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEE
Q 019405          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd  243 (341)
                      ....++++++++++++...++.|..+|.+...... +....        ......+++  .++++++++....+.|..++
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~~~--------~~~p~gi~~--d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTD--------ITAPWGIAV--DEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSS--------CCSEEEEEE--CTTCCEEEEETTTTEEEEEC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeee-eeccc--------cCCCcccee--eeeeeeeeeecCCCEEEEEe
Confidence            45678999999988888888899999987543332 22111        133678888  88898888888888898887


Q ss_pred             cCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEEeCCCCEEEEEC
Q 019405          244 TSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (341)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~  287 (341)
                      ......  ..+. ..-.....|+++++|.++++-..++.|+.++.
T Consensus       210 ~~~~~~--~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         210 AGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TTCSCC--EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCCeE--EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            665332  2221 12235678999999887777666666765554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.4e-05  Score=62.08  Aligned_cols=159  Identities=11%  Similarity=0.055  Sum_probs=92.4

Q ss_pred             ecCCceEEEEecCCCCEEEEeeCC-Ce--EEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEE-EEEeC
Q 019405          160 CASGTIAFSKVDISEKFSLFGGKG-VE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTN  235 (341)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d-~~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~  235 (341)
                      ..........|+|+++.++..... +.  +..+..............          .......+  .+++..+ ++...
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~  147 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTW--FPDSQNLAFTSDQ  147 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS----------SCEEEEEE--CTTSSEEEEEECT
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecc----------cccccccc--ccccccceecccc
Confidence            345677888999999988865532 22  333333333322222211          11223334  4455444 44444


Q ss_pred             CCe--EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC-C--EEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          236 DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-D--LASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       236 d~~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ++.  |.+.++....  ...+...........|+|+++.++..+.++ .  +.+.+...+...  .... ........|+
T Consensus       148 ~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~p~~S  222 (269)
T d2hqsa1         148 AGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSS-TFLDETPSLA  222 (269)
T ss_dssp             TSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCC-SSSCEEEEEC
T ss_pred             cCCceEeeeeccccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce--Eeec-CccccceEEC
Confidence            554  4555555433  344444556677789999999888766543 3  455565554432  2222 4567788999


Q ss_pred             CCCCEEEEEeC---CCcEEEEEcCCCce
Q 019405          311 PTLPIIASCGL---DSYLRFWDIKTRQL  335 (341)
Q Consensus       311 ~~~~~l~s~~~---dg~v~iwd~~~~~~  335 (341)
                      |||+.|+..+.   ...|+++++..+..
T Consensus       223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         223 PNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            99998875553   34788999986654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.4e-05  Score=62.04  Aligned_cols=134  Identities=9%  Similarity=-0.045  Sum_probs=79.5

Q ss_pred             ceEEEEecCCCCEEEEe-eCCC--eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC-eE
Q 019405          164 TIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QV  239 (341)
Q Consensus       164 ~i~~~~~~~~~~~l~~~-~~d~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i  239 (341)
                      ......++++++.++.. ..++  .|...++..+........          ........|  +|++..++..+.++ ..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~--spdg~~~~~~~~~~~~~  195 (269)
T d2hqsa1         128 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE----------GSQNQDADV--SSDGKFMVMVSSNGGQQ  195 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------SSEEEEEEE--CTTSSEEEEEEECSSCE
T ss_pred             cccccccccccccceecccccCCceEeeeecccccceeeecc----------ccccccccc--ccccceeEEEeecCCce
Confidence            33444566666554443 3344  466666665543322221          133556677  88999888765543 44


Q ss_pred             EEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEEeEEeccccCceeEEEecCC
Q 019405          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~  312 (341)
                      .+|....... ......+........|+|||+.|+-.+.   ...|+++++..+... .+... .+.+...+|+|-
T Consensus       196 ~i~~~~~~~~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~-~g~~~~p~WSP~  268 (269)
T d2hqsa1         196 HIAKQDLATG-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPAT-DGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEETTTC-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCS-SSEEEEEEECCC
T ss_pred             eeeEeecccc-cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCC-CCcEEeEEeCCC
Confidence            4444333222 2233345566778899999998875443   346899999866554 45444 667888999983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.73  E-value=2.8e-06  Score=67.61  Aligned_cols=115  Identities=10%  Similarity=0.031  Sum_probs=83.7

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..+..++++|||+++++...+++|..+|....... ....          ...+.+++|  .++++++++...++.+..+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~-~~~~----------~~~~~gla~--~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI-HATV----------EGKVSGLAF--TSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE-EEEC----------SSEEEEEEE--CTTSCEEEEEECTTSCEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE-EEcC----------CCCcceEEE--cCCCCeEEEecCCceEEEE
Confidence            35778999999999999999999999986543222 1111          245889999  8999999998888889888


Q ss_pred             EcCCCCceeEEEEe--cCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          243 DTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       243 d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      +..........+..  .......+++.++++++++-+.++.+..+|...+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            87654332333322  3345788999999988888777777777776544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=2.6e-05  Score=61.10  Aligned_cols=116  Identities=7%  Similarity=0.025  Sum_probs=83.0

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~i  241 (341)
                      .....++++++++.+++....+.|++||. +++.+..+....       .......+++  .++++++++-.. ++.|.+
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g-------~~~~P~giav--D~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG-------ITNYPIGVGI--NSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT-------TSCSEEEEEE--CTTCCEEEEECSSSCEEEE
T ss_pred             cccceeeeccceeEEeeeccccceeeeec-CCceeeeecccc-------cccCCccccc--ccCCeEEEEECCCCcEEEE
Confidence            45678889999999888888899999997 456666654321       1134678888  889987777543 457999


Q ss_pred             EEcCCCCceeEEEEec--CCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCe
Q 019405          242 YDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (341)
Q Consensus       242 wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~  291 (341)
                      |+.. ++ .+..+...  ......+++.|+|.+ ++++.+..|++|..+...
T Consensus       227 f~~~-G~-~~~~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         227 FTQD-GQ-LISALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ECTT-SC-EEEEEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCCC
T ss_pred             ECCC-CC-EEEEEeCCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeeec
Confidence            9854 44 35555433  235788999999965 455678899999887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=2.8e-05  Score=62.15  Aligned_cols=194  Identities=7%  Similarity=-0.059  Sum_probs=115.4

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeC----CCeEEEEECCCCceeeec
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTA  200 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~  200 (341)
                      .+++-...+.|..++.+.         +.+..+..........++++++|+++++...    .+.+...+..........
T Consensus        53 Ly~~D~~~g~I~ri~p~g---------~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~  123 (319)
T d2dg1a1          53 LFLLDVFEGNIFKINPET---------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII  123 (319)
T ss_dssp             EEEEETTTCEEEEECTTT---------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             EEEEECCCCEEEEEECCC---------CeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence            444445556655554321         1233333344556788999999988776533    234555565554433333


Q ss_pred             CCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE
Q 019405          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (341)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  274 (341)
                      .....       ......+++  .++|++.++...      .+.+..++.....  +..+...-...+.++|+|+++.|+
T Consensus       124 ~~~~~-------~~~~nd~~~--d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         124 EDLST-------AYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             CSSSS-------CCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEE
T ss_pred             cCCCc-------ccCCcceeE--EeccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEE
Confidence            22111       133677888  889987666432      1235555544322  333333334567899999998665


Q ss_pred             EE-eCCCCEEEEECCCC-eEEe----EE--eccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          275 IG-NGSGDLASVDIRTG-KLLG----CF--IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       275 ~g-~~dg~i~iwd~~~~-~~~~----~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+ +..+.|+.||+... ....    ..  ........-.|++.++|++.++....+.|.+||. .|+.+.++
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            54 56788999987632 1111    11  1010123567999999998888888999999995 68888765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.66  E-value=4.9e-05  Score=60.72  Aligned_cols=229  Identities=10%  Similarity=0.033  Sum_probs=127.3

Q ss_pred             eEEEeccCCCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEccc-
Q 019405           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-  132 (341)
Q Consensus        54 ~~~~s~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  132 (341)
                      -++|..+    |++.++-..+++|..|+.++++....+..        .......+++-+...        .+++...+ 
T Consensus        44 G~~~D~~----G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~--------~~~~p~gla~~~dG~--------l~va~~~~~  103 (319)
T d2dg1a1          44 GLNFDRQ----GQLFLLDVFEGNIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGR--------LFVCYLGDF  103 (319)
T ss_dssp             EEEECTT----SCEEEEETTTCEEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSC--------EEEEECTTS
T ss_pred             eCEECCC----CCEEEEECCCCEEEEEECCCCeEEEEEeC--------CCCCeeEEEECCCCC--------EEEEecCCC
Confidence            4455443    44677777889999999876554433322        113344444433222        33333221 


Q ss_pred             -ceeEEEEeeecccccccCCceEEEEE-eecCCceEEEEecCCCCEEEEeeC------CCeEEEEECCCCceeeecCCCC
Q 019405          133 -GKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPP  204 (341)
Q Consensus       133 -g~~~i~~~~~~~~~~~~~~~~v~~~~-~~~~~~i~~~~~~~~~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~  204 (341)
                       ....++.+.....      ....... .........++++++|++.++...      .+.+..++............  
T Consensus       104 ~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--  175 (319)
T d2dg1a1         104 KSTGGIFAATENGD------NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--  175 (319)
T ss_dssp             SSCCEEEEECTTSC------SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--
T ss_pred             ccceeEEEEcCCCc------eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--
Confidence             2233333322110      0111111 112234677889999987665322      12355555433221111111  


Q ss_pred             CCccCccCCeeeeEEEEEecCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEE-----e--cCCCeEEEEEcCCCceEEEE
Q 019405          205 KNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFD-----F--RETPIKAVAEEPDSFNIYIG  276 (341)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~-----~--~~~~v~~~~~~~~~~~l~~g  276 (341)
                              -...+.++|  +++++.| ++-+..+.|..||+...........     .  .......+++.++|++.++.
T Consensus       176 --------~~~pnGia~--s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         176 --------ISVANGIAL--STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             --------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             --------cceeeeeee--ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence                    022567899  8998865 4556678999999875322111111     1  11224579999999988888


Q ss_pred             eCCCCEEEEECCCCeEEeEEeccc-----cCceeEEEecCCCCEEEEEeC
Q 019405          277 NGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHPTLPIIASCGL  321 (341)
Q Consensus       277 ~~dg~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~s~~~  321 (341)
                      ...+.|.+||. +|+.+..+....     ...+++++|.++...+++...
T Consensus       246 ~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         246 YGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            88999999996 688888776431     235789999998876665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.58  E-value=4.3e-05  Score=62.29  Aligned_cols=116  Identities=9%  Similarity=-0.031  Sum_probs=74.9

Q ss_pred             eeeEEEEEecCCCCEEEEEeC-CCeEEEEEcCCCCcee--EEEEe--cCCCeEEEEEcCCCceEEEEe-CCCCEEEEECC
Q 019405          215 WFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPV--MSFDF--RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR  288 (341)
Q Consensus       215 ~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~  288 (341)
                      .+.++.|  +|++++++++.. ...|.+|+........  .....  .......++|+|+++++++.. .++.|.+|++.
T Consensus       146 h~h~v~~--sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEE--CCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3678999  999998887754 4578888866433211  11111  234678899999999887655 57889999987


Q ss_pred             CCeE--EeEEecc----------------ccCceeEEEecCCCCEEEEEeC------CCcEEEEEcCC
Q 019405          289 TGKL--LGCFIGK----------------CSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKT  332 (341)
Q Consensus       289 ~~~~--~~~~~~~----------------~~~~i~~~~~~~~~~~l~s~~~------dg~v~iwd~~~  332 (341)
                      .++.  +......                .......+.++|+|++|+++..      ...|..|++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence            6532  2111100                0123567899999998877642      22377777654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.50  E-value=0.00015  Score=62.61  Aligned_cols=152  Identities=14%  Similarity=0.101  Sum_probs=91.9

Q ss_pred             CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCC---EEEEEeCCCeEEEEEcCCCCceeEEEEecC-
Q 019405          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-  258 (341)
Q Consensus       183 d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  258 (341)
                      ...+...|+++++..+.++....................  ..++.   .++..+.+|.+.++|..+++. +...+... 
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~--~~~g~~~~~v~~~~k~G~l~vlDr~tG~~-i~~~~~~~~  347 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQ--PVNGKMTPLLSHIDRNGILYTLNRENGNL-IVAEKVDPA  347 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE--EETTEEEEEEEEECTTSEEEEEETTTCCE-EEEEESSTT
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeee--eccCccccceeeccccceEEEEecCCCcE-eeeeccCCc
Confidence            346888999999999887765433322211111121222  12333   467788999999999888763 32211100 


Q ss_pred             ------------------------------------C--CeEEEEEcCCCceEEEEeCC---------------------
Q 019405          259 ------------------------------------T--PIKAVAEEPDSFNIYIGNGS---------------------  279 (341)
Q Consensus       259 ------------------------------------~--~v~~~~~~~~~~~l~~g~~d---------------------  279 (341)
                                                          .  .-...+++|+..++++...+                     
T Consensus       348 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  427 (571)
T d2ad6a1         348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccc
Confidence                                                0  00125567766666543322                     


Q ss_pred             ----------------CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 ----------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 ----------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                                      |.|.-+|+.+++.+.+....  .+..+-...-.+.+++.++.||.++-+|.++|+.+.++
T Consensus       428 ~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeeccccCCcccCCcccEEEeccCCCceeeEcCCC--CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence                            45778888888887766532  22222122224567778999999999999999999775

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.3e-06  Score=70.14  Aligned_cols=192  Identities=9%  Similarity=-0.009  Sum_probs=111.2

Q ss_pred             EEEcccceeEEEEeeecccccccCCceEEEEEeec--CCceEEEEecCCCCEEEEee---------CCCeEEEEECCCCc
Q 019405          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGG---------KGVEVNVWDLDKCE  195 (341)
Q Consensus       127 ~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~i~~~~~~~~~~~l~~~~---------~d~~v~i~d~~~~~  195 (341)
                      +.-..+|.+.++++....        .-.+.+...  ...+....++||+++++...         ..+.+.+||+.+++
T Consensus        31 ~~~~~~g~i~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          31 IYREQKGTVRLWNVETNT--------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CCCCSSSCEEEBCGGGCC--------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEEeCCCcEEEEECCCCC--------EEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            334556778888775433        112222211  12456778999999988753         35678999998876


Q ss_pred             eeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCC--------------
Q 019405          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETP--------------  260 (341)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~--------------  260 (341)
                      ..........       ...+....|  +|+|+.||-.. ++.|.+.+...+.. ++... +....              
T Consensus       103 ~~~l~~~~~~-------~~~l~~~~w--SPDG~~iafv~-~~nl~~~~~~~~~~-~~lt~~g~~~~i~nG~~d~vyeee~  171 (465)
T d1xfda1         103 PQSLDPPEVS-------NAKLQYAGW--GPKGQQLIFIF-ENNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEI  171 (465)
T ss_dssp             CEECCCTTCC-------SCCCSBCCB--CSSTTCEEEEE-TTEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             eeeccCccCC-------ccccceeee--ccCCceEEEEe-cceEEEEecCCCce-EEEecccCcceeeccccchhhhhhh
Confidence            5332211111       123455678  99999998875 67888888776543 33222 11111              


Q ss_pred             ---eEEEEEcCCCceEEEEeCC-CC---------------------------------EEEEECCCCeEEeEEec-----
Q 019405          261 ---IKAVAEEPDSFNIYIGNGS-GD---------------------------------LASVDIRTGKLLGCFIG-----  298 (341)
Q Consensus       261 ---v~~~~~~~~~~~l~~g~~d-g~---------------------------------i~iwd~~~~~~~~~~~~-----  298 (341)
                         -.++.|||||+.||....| ..                                 +.++|+.++........     
T Consensus       172 ~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~  251 (465)
T d1xfda1         172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (465)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence               2467899999999876432 22                                 33444433322111100     


Q ss_pred             cccCceeEEEecCCCCEEEEEe-CC---CcEEEEEcCCCceee
Q 019405          299 KCSGSIRSIARHPTLPIIASCG-LD---SYLRFWDIKTRQLLS  337 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~-~d---g~v~iwd~~~~~~~~  337 (341)
                      ....-+..+.|+|++++++... .+   ..|.++|..+|++..
T Consensus       252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence            0011367789999988655532 22   267889999987643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=0.00017  Score=56.78  Aligned_cols=188  Identities=9%  Similarity=-0.012  Sum_probs=118.8

Q ss_pred             EEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCc
Q 019405          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (341)
Q Consensus       128 ~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~  207 (341)
                      +-...+.+.-|+.         ..+...+|..  ...+.++++.+++.++++ +.+ .|..+|..+++........... 
T Consensus        35 vDi~~~~I~r~d~---------~~g~~~~~~~--~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~-  100 (295)
T d2ghsa1          35 FNILERELHELHL---------ASGRKTVHAL--PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDL-  100 (295)
T ss_dssp             EEGGGTEEEEEET---------TTTEEEEEEC--SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTC-
T ss_pred             EECCCCEEEEEEC---------CCCeEEEEEC--CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCC-
Confidence            3334556666654         2335566654  456788898888877765 444 5999999988754433221111 


Q ss_pred             cCccCCeeeeEEEEEecCCCCEEEEEeCC----CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEE-EEeCCCCE
Q 019405          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDL  282 (341)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i  282 (341)
                          ....++.+.+  .++|++.++...+    +.-.+|.+..++  +..+...-..-..++|+++++.++ +-+..+.|
T Consensus       101 ----~~~~~nd~~v--d~~G~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I  172 (295)
T d2ghsa1         101 ----PGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  172 (295)
T ss_dssp             ----TTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             ----CcccceeeEE--CCCCCEEEEeccccccccceeEeeecCCc--EEEEeeccCCcceeeecCCCceEEEeeccccee
Confidence                1245788888  8899876664332    244566666544  233333334567899999997665 44557889


Q ss_pred             EEEECCC------CeE--EeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          283 ASVDIRT------GKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       283 ~iwd~~~------~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +.|++..      ++.  ...+.+. .+....+++..+|++.++.-..+.|..||. +|+.+.++
T Consensus       173 ~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         173 MRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             eEeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence            9888642      111  1122222 456788999999998877767788999995 57877765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.45  E-value=0.00017  Score=56.72  Aligned_cols=211  Identities=10%  Similarity=-0.019  Sum_probs=127.2

Q ss_pred             eEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccc
Q 019405           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (341)
Q Consensus        67 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~  146 (341)
                      ++.+--..++|..||..+++. ..+..         ...+.++...+. +        .++.++.+| +..++....   
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~-~~~~~---------~~~~~~i~~~~d-g--------~l~va~~~g-l~~~d~~tg---   88 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRK-TVHAL---------PFMGSALAKISD-S--------KQLIASDDG-LFLRDTATG---   88 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEE-EEEEC---------SSCEEEEEEEET-T--------EEEEEETTE-EEEEETTTC---
T ss_pred             EEEEECCCCEEEEEECCCCeE-EEEEC---------CCCcEEEEEecC-C--------CEEEEEeCc-cEEeecccc---
Confidence            444444678899999987654 23332         134455554433 3        455555554 556665322   


Q ss_pred             cccCCceEEEE-Eeec---CCceEEEEecCCCCEEEEeeC----CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          147 AESSCSTVKSW-NVCA---SGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       147 ~~~~~~~v~~~-~~~~---~~~i~~~~~~~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                            .+..+ +...   ...+..+.++|+|++.++...    .+.-.+|.+..++........          ...+.
T Consensus        89 ------~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----------~~~Ng  152 (295)
T d2ghsa1          89 ------VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----------SIPNS  152 (295)
T ss_dssp             ------CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----------SSEEE
T ss_pred             ------eeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----------CCcce
Confidence                  23322 2221   124678889999987775432    223456666555544333221          22567


Q ss_pred             EEEEecCCCCEEE-EEeCCCeEEEEEcCCCCc----eeEEE-E--ecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          219 AAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR----PVMSF-D--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       219 ~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~----~~~~~-~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      ++|  +++++.++ +-+..+.|..|++.....    ....+ .  ........+++..+|.+.++....+.|..||. ++
T Consensus       153 ~~~--s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G  229 (295)
T d2ghsa1         153 ICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG  229 (295)
T ss_dssp             EEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC
T ss_pred             eee--cCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC
Confidence            788  78887554 555678899998753211    01111 1  12334678999999988887778889999996 68


Q ss_pred             eEEeEEeccccCceeEEEec-CCCCEE-EEEe
Q 019405          291 KLLGCFIGKCSGSIRSIARH-PTLPII-ASCG  320 (341)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~-~~~~~l-~s~~  320 (341)
                      +.+..+... ...+++++|- |+.+.| +|..
T Consensus       230 ~~~~~i~lP-~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         230 NHIARYEVP-GKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CEEEEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred             cEeeEecCC-CCceEEEEEeCCCCCEEEEEEC
Confidence            888888876 5679999996 566644 4433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=0.00039  Score=58.43  Aligned_cols=37  Identities=3%  Similarity=-0.026  Sum_probs=25.9

Q ss_pred             ceeEEEecCCCCEEEEEeCC---CcEEEEEcCCCceeeee
Q 019405          303 SIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       303 ~i~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~  339 (341)
                      ...++.|||++++++..+..   -.+.+++..+++.+..|
T Consensus       411 ~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L  450 (465)
T d1xfda1         411 TYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (465)
T ss_dssp             CCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence            34678888888877644332   36778888888877765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.35  E-value=0.00048  Score=59.30  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=93.6

Q ss_pred             CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---CEEEEEeCCCeEEEEEcCCCCceeEEEEecC-C
Q 019405          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-T  259 (341)
Q Consensus       184 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~  259 (341)
                      ..|...|+++++..+.++................-+..  ..++   ..++.+..+|.+.++|..+++. +....... .
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~--~~~g~~~~~v~~~~k~G~~~~lDr~tG~~-i~~~~~~~~~  346 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVT  346 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCC
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeee--ecCCceeeeeeecCccceEEEEecCCCcc-cccccccccc
Confidence            45778888999888777655443332222222222222  1233   3567788999999999988764 32221100 0


Q ss_pred             -----------------------------------CeEEEEEcCCCceEEEEeC--------------------------
Q 019405          260 -----------------------------------PIKAVAEEPDSFNIYIGNG--------------------------  278 (341)
Q Consensus       260 -----------------------------------~v~~~~~~~~~~~l~~g~~--------------------------  278 (341)
                                                         .-...+++|+..++++...                          
T Consensus       347 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (560)
T d1kv9a2         347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA  426 (560)
T ss_dssp             SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred             cccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcc
Confidence                                               0013456666656554332                          


Q ss_pred             ----------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 ----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 ----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                                .|.|.-||+.+++.+.+....  .+..+-...-.+.+++.++.||.++-+|.++|+.|.++
T Consensus       427 ~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             GCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence                      246788999999988776642  33333233345668888999999999999999999775

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.33  E-value=0.00037  Score=55.23  Aligned_cols=165  Identities=13%  Similarity=0.050  Sum_probs=102.6

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC---------
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------  235 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------  235 (341)
                      -..+.++++++.++++...+.|..++.................+     ...+.+++  .++|++.++-..         
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~-----~~pndl~~--d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRM-----QGCNDCAF--DYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBC-----BCCCEEEE--CTTSCEEEEECBCBCTTSCCC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEecccccccc-----CCCcEEEE--CCCCCEEEecCccCccccccc
Confidence            45789999999888887777899999865543322222111111     23567888  888988776432         


Q ss_pred             ------CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCc-----eEEEEeCCCCEEEEECCCC-eE-----EeEEec
Q 019405          236 ------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-----NIYIGNGSGDLASVDIRTG-KL-----LGCFIG  298 (341)
Q Consensus       236 ------d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~g~~dg~i~iwd~~~~-~~-----~~~~~~  298 (341)
                            .|.|..++... +  ...+...-..-+.++|+|++.     ++++-+..+.|+.||+... ..     ...+..
T Consensus       146 ~~~~~~~G~v~~~~~dg-~--~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~  222 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTDG-Q--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             BTTSSSCEEEEEECTTS-C--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ceeccCCceEEEEeecC-c--eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc
Confidence                  23444444332 2  222222333456899988764     4445566788999987533 22     112222


Q ss_pred             cccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       299 ~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      ......-.+++.++|+++++....+.|.+||.+.++.+.++
T Consensus       223 ~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i  263 (314)
T d1pjxa_         223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred             cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEE
Confidence            21234567999999998888878899999999887765543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.30  E-value=0.00058  Score=58.96  Aligned_cols=57  Identities=12%  Similarity=-0.064  Sum_probs=42.6

Q ss_pred             CEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .|.-||+.+++.+.+.+..  .+...-...-.+.++++++.||.++.+|.++|+.|.++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            4777888899888777643  23222223336778888999999999999999999775

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=0.0021  Score=55.50  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=44.7

Q ss_pred             CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       280 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      |.|.-+|+.+|+.+.+.+.+  .++.+-..+-.+.+++.++.||.++-+|.+||+.|.++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            56888899999888877654  33433333446778888999999999999999999775

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.08  E-value=0.0025  Score=55.03  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=92.7

Q ss_pred             CeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCC---CEEEEEeCCCeEEEEEcCCCCceeEEEEecC--
Q 019405          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--  258 (341)
Q Consensus       184 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--  258 (341)
                      ..|...|+++++..+.++.................+.. +..++   ..++....+|.+.++|..+++. +.......  
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~-~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~-i~~~~~~~~~  355 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDGAL-VSANKLDDTV  355 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSTTC
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeec-cccccccccceeccccccceeeecCCCCce-eeeccccccc
Confidence            45888999999999887765444333222222222222 12233   3577788999999999988763 32221100  


Q ss_pred             -----------CC--------------------------eEEEEEcCCCceEEEEeC-----------------------
Q 019405          259 -----------TP--------------------------IKAVAEEPDSFNIYIGNG-----------------------  278 (341)
Q Consensus       259 -----------~~--------------------------v~~~~~~~~~~~l~~g~~-----------------------  278 (341)
                                 .+                          -...+++|+..+++....                       
T Consensus       356 ~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~  435 (596)
T d1w6sa_         356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (596)
T ss_dssp             CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccc
Confidence                       00                          012345555545444321                       


Q ss_pred             ----------------CCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 019405          279 ----------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       279 ----------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                                      -|.|.-||+.+++.+.+...  ..++.+-..+-.+.+++.|+.||.++-+|.++|+.|.++
T Consensus       436 ~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (596)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCcccCcccCCCcceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEE
Confidence                            14677888888888766543  233333333445678888999999999999999999775

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.91  E-value=0.0025  Score=48.95  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=45.1

Q ss_pred             cCCCeEEEEEcCCCceEEEEeCC--CCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCc
Q 019405          257 RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       257 ~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  334 (341)
                      .........++++. .+.....+  ..|+++|+.+++... +..+  .......|+|||+.|+.. .++.|+++|+.+++
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~--~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         190 MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSF--TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCC--CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             Cccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecC--CCcccccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            33444555666653 33333333  347888887665433 3222  122334689999987764 56889999999887


Q ss_pred             ee
Q 019405          335 LL  336 (341)
Q Consensus       335 ~~  336 (341)
                      .-
T Consensus       265 ~~  266 (281)
T d1k32a2         265 IE  266 (281)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.88  E-value=0.0045  Score=53.06  Aligned_cols=80  Identities=11%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-E
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  315 (341)
                      |.|.-||+.+++. +-.... ..+...-.+.-.+.++++|+.||.++.+|.++|+.+.+++......-.=+.+..+|+ +
T Consensus       438 G~l~A~D~~tGk~-~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKA-AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEE-EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeE-eeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4677788888764 333332 222222222334568888999999999999999999888754111111245556776 4


Q ss_pred             EEE
Q 019405          316 IAS  318 (341)
Q Consensus       316 l~s  318 (341)
                      |+.
T Consensus       516 v~v  518 (560)
T d1kv9a2         516 VAI  518 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.84  E-value=0.0036  Score=53.87  Aligned_cols=73  Identities=15%  Similarity=0.125  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE--EEecCCCC
Q 019405          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTLP  314 (341)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~~~~~~  314 (341)
                      .+.-||+.+++. +-..... .+...-..+-.+.++++|+.||.++.+|.++|+.+.+++..  ..+..  +.|..+|+
T Consensus       458 ~l~AiD~~tGk~-~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~--~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         458 RLLAWDPVAQKA-AWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEETTTTEE-EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCCCSCCEEEEETTE
T ss_pred             cEEEeCCCCCce-EeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC--CCccccCEEEEECCE
Confidence            466667776654 3333322 22221122335668889999999999999999999888753  22222  44555776

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.83  E-value=0.0024  Score=54.91  Aligned_cols=78  Identities=15%  Similarity=0.023  Sum_probs=46.9

Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeE--EEecCCCC
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTLP  314 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~--~~~~~~~~  314 (341)
                      |.|.-+|+.+++. +-+.... .+..+-...-.+.++++|+.||.++.+|.++|+.+.++...  ..+.+  +.|..+|+
T Consensus       444 G~l~AiD~~TG~~-~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~--~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKA-KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP--SGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCCCSCCEEEEETTE
T ss_pred             ccEEEeccCCCce-eeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC--CCceecceEEEECCE
Confidence            3566677777664 3222211 12111111223557888999999999999999999888753  22222  55666786


Q ss_pred             -EEEE
Q 019405          315 -IIAS  318 (341)
Q Consensus       315 -~l~s  318 (341)
                       +++.
T Consensus       520 qYi~v  524 (571)
T d2ad6a1         520 QYIGS  524 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=0.0058  Score=46.72  Aligned_cols=227  Identities=13%  Similarity=0.074  Sum_probs=136.8

Q ss_pred             CCCCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEee
Q 019405           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (341)
Q Consensus        62 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~  141 (341)
                      +|..+.||.-+ ..++.|+|+++.+.++.+...         ..++--.|.+...          +.--.+..+.-|+++
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~~---------e~VvfWkWis~~~----------L~lVT~taVYHW~~~  130 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDVTFWKWISLNT----------VALVTDNAVYHWSME  130 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCCCEEEESSSSE----------EEEECSSEEEEEESS
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---------CCcEEEEecCCCE----------EEEEcCCceEEEccc
Confidence            34445666644 678999999998888887763         4455555555443          222234578999984


Q ss_pred             ecccccccCCceEEEEEeecC---CceEEEEecCCCCEEEEee-------CCCeEEEEECCCCceeeecCCCCCCccC--
Q 019405          142 VTKVSAESSCSTVKSWNVCAS---GTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLG--  209 (341)
Q Consensus       142 ~~~~~~~~~~~~v~~~~~~~~---~~i~~~~~~~~~~~l~~~~-------~d~~v~i~d~~~~~~~~~~~~~~~~~~~--  209 (341)
                      .       ...++++++....   ..|..-..+++.++++..+       -.|.+.+|..+.+ ..+.+++|......  
T Consensus       131 g-------~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  202 (327)
T d1utca2         131 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  202 (327)
T ss_dssp             S-------SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEEC
T ss_pred             C-------CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEE
Confidence            3       2237888876432   4567777788888877532       2356889988754 33344444211000  


Q ss_pred             ---ccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCCCC---ce--eEEEEe------cCCCeEEEEEcCCCceEEE
Q 019405          210 ---IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RP--VMSFDF------RETPIKAVAEEPDSFNIYI  275 (341)
Q Consensus       210 ---~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~--~~~~~~------~~~~v~~~~~~~~~~~l~~  275 (341)
                         ..++..+.|.+.  .        +...+.+++.++....   .+  .+...-      ..+--.++..++.-..++.
T Consensus       203 ~~g~~~~~~lf~fa~--r--------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         203 MEGNAEESTLFCFAV--R--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             CTTCSSCEEEEEEEE--E--------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred             cCCCCCCceEEEEEE--C--------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence               001111222221  0        1223678888886522   11  111111      1233457888887778888


Q ss_pred             EeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEE
Q 019405          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (341)
Q Consensus       276 g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~i  327 (341)
                      -+.-|.|++||++++.++..-+-. ..+|...+-+.+..-+++...+|.|..
T Consensus       273 iTK~G~i~lyDleTgt~i~~nRIs-~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         273 ITKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EecCcEEEEEEcccccEEEEeecC-CCceEEeccCCCCceEEEECCCCeEEE
Confidence            999999999999999999877765 667776665555555666667776643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.63  E-value=0.01  Score=47.89  Aligned_cols=236  Identities=11%  Similarity=0.041  Sum_probs=135.6

Q ss_pred             EEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCC-----------------Ccee----------------eEeeeec
Q 019405           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED-----------------DGIV----------------GLHLFKR  114 (341)
Q Consensus        68 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~----------------~~~~~~~  114 (341)
                      +.+|+..|.|+|+-+.+++.+..+..+.+...++-.                 ....                .+.+-+ 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td-   94 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE-   94 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET-
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC-
Confidence            677889999999999999988888776544433210                 0000                011110 


Q ss_pred             cccccccccc--eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEec--CCCCEEEEeeCCC------
Q 019405          115 QREESSSRSR--TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGV------  184 (341)
Q Consensus       115 ~~~~~~~~~~--~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~------  184 (341)
                           +..++  .++.-..+.++.+.+++..+        +.++..+.....+..+...  |+..+++..+...      
T Consensus        95 -----GtyDGrylFVNDkan~RVAvIdl~~fk--------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          95 -----GKYDGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             -----TEEEEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             -----CccceeEEEEEcCCCceEEEEECccee--------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCC
Confidence                 00111  23333345566666654332        3334444445556655554  4556777655532      


Q ss_pred             ------------eEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC---------------
Q 019405          185 ------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------------  237 (341)
Q Consensus       185 ------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---------------  237 (341)
                                  .+.+.|..+.+..+++....          ....+.+  +++|+++++.+.+.               
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g----------~ld~~~~--s~dGK~af~TsyNSE~g~~l~e~ta~e~D  229 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSG----------NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMD  229 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEEESS----------CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             CccccchhhcceEEEEEecCCceEEEEeeeCC----------Chhcccc--CCCCCEEEEEeccccCCcchhhcccccce
Confidence                        36678888888777665432          1445677  88999988876431               


Q ss_pred             -----------------------eEEEEEcCCC--CceeEEEEecCCCeEEEEEcCCCceEEEEe-CCCCEEEEECCCCe
Q 019405          238 -----------------------QVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK  291 (341)
Q Consensus       238 -----------------------~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~  291 (341)
                                             .+.+-|.+..  ...+..+... .....+.++|||+++++++ .+.++.++|++.-.
T Consensus       230 ~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         230 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence                                   1233343321  1112222222 2345789999999988765 58999999986321


Q ss_pred             ------------EEeEEeccccCceeEEEecCCCCEEEEEeCCCcEEEEEcCC
Q 019405          292 ------------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (341)
Q Consensus       292 ------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~  332 (341)
                                  .......  .-.-..-+|...|.-..|---|..|.-|++..
T Consensus       309 ~~~~~~~~~~~~~~~e~el--glgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         309 AVFYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             HHHHSCC-GGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             hhhcccCCccccEEeeccc--CcCccccccCCCceEEEEeeccceEEEEecch
Confidence                        1111111  22334567888886666667899999999853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.50  E-value=0.00086  Score=51.70  Aligned_cols=94  Identities=14%  Similarity=-0.041  Sum_probs=66.1

Q ss_pred             cCC--CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC-CC-----CEEEEECCCCeEEeE
Q 019405          224 IDD--HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG-----DLASVDIRTGKLLGC  295 (341)
Q Consensus       224 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg-----~i~iwd~~~~~~~~~  295 (341)
                      +|+  |++++..+ ++.|.+.|+.+++  .+.+..+...+...+|||||+.||-... ++     .|.+++..+++....
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            566  88888764 5678888998765  4567777778889999999998885432 22     388888888876543


Q ss_pred             Eecc-----ccCceeEEEecCCCCEEEEEe
Q 019405          296 FIGK-----CSGSIRSIARHPTLPIIASCG  320 (341)
Q Consensus       296 ~~~~-----~~~~i~~~~~~~~~~~l~s~~  320 (341)
                      ....     .........|+|+|+.|+...
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEE
Confidence            2111     023456788999999887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.46  E-value=0.027  Score=48.43  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=47.6

Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-E
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  315 (341)
                      |.|.-||+.+++. +-... +..+..+-.++..+.+++.|+.||.++.+|.++|+.+.++.......-.=+.|..+|+ +
T Consensus       453 G~l~A~D~~TG~~-~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDY-KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCE-EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCce-ecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            4677777777664 32222 2222222222334667888999999999999999999888753111111144555776 4


Q ss_pred             EE
Q 019405          316 IA  317 (341)
Q Consensus       316 l~  317 (341)
                      ++
T Consensus       531 va  532 (596)
T d1w6sa_         531 VA  532 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.015  Score=44.48  Aligned_cols=157  Identities=11%  Similarity=0.133  Sum_probs=102.7

Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      +.-.+|..+.||.-+ ..++.+||+++.+.+..+.-..          .|.--.|.   +.+.|+..+ +..|+-|++..
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----------~VvfWkWi---s~~~L~lVT-~taVYHW~~~g  131 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----------DVTFWKWI---SLNTVALVT-DNAVYHWSMEG  131 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----------CCCEEEES---SSSEEEEEC-SSEEEEEESSS
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC----------CcEEEEec---CCCEEEEEc-CCceEEEcccC
Confidence            445678888888765 4589999999999887776543          24445663   345566554 45899999977


Q ss_pred             CCceeEEEEecC----CCeEEEEEcCCCceEEEEe---C----CCCEEEEECCCCe------------------------
Q 019405          247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGN---G----SGDLASVDIRTGK------------------------  291 (341)
Q Consensus       247 ~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~g~---~----dg~i~iwd~~~~~------------------------  291 (341)
                      ...|.+.+..|.    ..|..-..+++.++++..+   .    .|.+.+|..+.+.                        
T Consensus       132 ~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~  211 (327)
T d1utca2         132 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEEST  211 (327)
T ss_dssp             SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred             CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCce
Confidence            666888887663    3566677788888876543   2    2567788765421                        


Q ss_pred             ------------EEeEEe-cc---------------------ccCceeEEEecCCCCEEEEEeCCCcEEEEEcCCCceee
Q 019405          292 ------------LLGCFI-GK---------------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (341)
Q Consensus       292 ------------~~~~~~-~~---------------------~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  337 (341)
                                  .++.+. ++                     ..+--.++..++.-..+..-+.-|.|++||+.++.++.
T Consensus       212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence                        000000 00                     01112344555555677778889999999999999876


Q ss_pred             e
Q 019405          338 A  338 (341)
Q Consensus       338 ~  338 (341)
                      .
T Consensus       292 ~  292 (327)
T d1utca2         292 M  292 (327)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.32  E-value=0.013  Score=47.39  Aligned_cols=148  Identities=9%  Similarity=0.012  Sum_probs=92.8

Q ss_pred             CCCEEEEee-CCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--------------
Q 019405          173 SEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--------------  237 (341)
Q Consensus       173 ~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--------------  237 (341)
                      ||+++++.. .++.|.+.|+++.+....+..+..        ..+..++..+.|+-.+++..+.+.              
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~--------~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~  169 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA--------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  169 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC--------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCC--------CCCceeecccCCCeEEEEccCccccccCCCCccccchh
Confidence            788888765 568899999999887554333211        225555553345666777666532              


Q ss_pred             ----eEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCC---------------------------------
Q 019405          238 ----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---------------------------------  280 (341)
Q Consensus       238 ----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---------------------------------  280 (341)
                          .+.++|..+.+. ....... .....+.++|+|+++++.+.+.                                 
T Consensus       170 ~y~~~~t~ID~~tm~V-~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         170 NYVNVFTAVDADKWEV-AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             -EEEEEEEEETTTTEE-EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hcceEEEEEecCCceE-EEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                356788877654 3333222 3456789999999999877542                                 


Q ss_pred             -----CEEEEECCCC---eEEeEEeccccCceeEEEecCCCCEEEEEe-CCCcEEEEEcCC
Q 019405          281 -----DLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKT  332 (341)
Q Consensus       281 -----~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~v~iwd~~~  332 (341)
                           .+.+-|.++.   ..+..+..  ......+..+|||++++.++ .+.++.++|++.
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPV--pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEec--CCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                 1233343321   12222332  24467899999999776555 688999999864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.12  E-value=0.043  Score=44.00  Aligned_cols=147  Identities=5%  Similarity=-0.091  Sum_probs=70.2

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCC--------eEEEEE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--------QVRLYD  243 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--------~i~iwd  243 (341)
                      ++++.++.++..+.+.+++..+................ .....-.++.+. ..+++.++.|+...        ...+.+
T Consensus       191 ~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~v~v~GG~~~~~~~~~~~~~~~~~  268 (387)
T d1k3ia3         191 KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA-PDAMCGNAVMYD-AVKGKILTFGGSPDYQDSDATTNAHIIT  268 (387)
T ss_dssp             GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC-CCCBTCEEEEEE-TTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             CCCCEEEecCcCCcEEecCcccCcEeeccccccCcccC-cccccccEEEee-ccCCceEEEEeccCCCCCcccceeeccc
Confidence            45677777777777778887765433221111000000 000011222221 34566667665421        233444


Q ss_pred             cCCCCceeEEEEe-----cCCCeEEEEEcCCCceEEEEeCC-----------CCEEEEECCCCeEEeEEeccccCce-e-
Q 019405          244 TSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIYIGNGS-----------GDLASVDIRTGKLLGCFIGKCSGSI-R-  305 (341)
Q Consensus       244 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~i-~-  305 (341)
                      +............     ....-.+....+++++++.|+.+           ..+.+||..+.+....-... .... . 
T Consensus       269 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~-~~R~~Hs  347 (387)
T d1k3ia3         269 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYHS  347 (387)
T ss_dssp             CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTTE
T ss_pred             ccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC-CcccceE
Confidence            3321111111111     11112345556899999988853           14789999877543221111 1111 1 


Q ss_pred             EEEecCCCCEEEEEeC
Q 019405          306 SIARHPTLPIIASCGL  321 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~  321 (341)
                      ...+.+||++|+.|+.
T Consensus       348 ~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         348 ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECTTSCEEEEECC
T ss_pred             EEEECCCCEEEEEeCC
Confidence            2345789999998873

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.76  E-value=0.044  Score=43.32  Aligned_cols=146  Identities=9%  Similarity=0.122  Sum_probs=88.6

Q ss_pred             CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEe----cCCCCEEEEEeC-C---CeEEEEE
Q 019405          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----IDDHRKFVAGTN-D---HQVRLYD  243 (341)
Q Consensus       172 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~~~~~-d---~~i~iwd  243 (341)
                      |+..+++...+.+-|++||+. |+.+..+....           ++.+....    ......++.++. +   .+|.+|.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr-----------~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK-----------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSC-----------EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCC-----------cCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            455677766777779999994 88877765433           33333210    122223444442 2   3688888


Q ss_pred             cCCCCceeEEEEec-------CCCeEEEEE--cCC-Cc-eEEEEeCCCCEEEEECC---CC----eEEeEEeccccCcee
Q 019405          244 TSAQRRPVMSFDFR-------ETPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIR  305 (341)
Q Consensus       244 ~~~~~~~~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~g~~dg~i~iwd~~---~~----~~~~~~~~~~~~~i~  305 (341)
                      +......+..+...       ...+..+|+  ++. +. ++++...+|.+..|.+.   .+    ++++.+..  ...+.
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~E  183 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--NSQTE  183 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--CCccc
Confidence            76433223333221       123566666  664 43 56677778998888663   33    45666664  46789


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          306 SIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       306 ~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                      .+++.+....|..+-++.-|..++..
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             eEEEeCCCCcEEEecCccceEEEEec
Confidence            99999998999988887666555543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.65  E-value=0.13  Score=44.03  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCC-E
Q 019405          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (341)
Q Consensus       237 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  315 (341)
                      |.|.-+|+.+++. +-....+ .++..-..+..+.++++|+.||.++.+|.++|+.+.+++......-.=+.|..+|+ +
T Consensus       466 G~l~AiD~~TG~i-~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcE-EeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5677788887764 4344333 23332223345668888999999999999999999988754111111256667886 4


Q ss_pred             EEE
Q 019405          316 IAS  318 (341)
Q Consensus       316 l~s  318 (341)
                      ++.
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.12  Score=39.07  Aligned_cols=163  Identities=9%  Similarity=-0.093  Sum_probs=96.4

Q ss_pred             CceEEEEecCCCCEEEEe-eCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEe--CCCeE
Q 019405          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQV  239 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i  239 (341)
                      ..+..+++++.+..|+.. ...+.|.+.++........+....         .....++.  .|...+|.-..  ..+.|
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~---------~~P~~l~v--d~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC---------CCcceEEE--EcccCeEEEeccCCCcce
Confidence            345678887755555544 456789999987654433332221         23677888  55444444332  33467


Q ss_pred             EEEEcCCCCceeEEEE-ecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEecc-ccCceeEEEecCCCCEE
Q 019405          240 RLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPII  316 (341)
Q Consensus       240 ~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l  316 (341)
                      ...++....  ...+. ..-.....+++.+.+..|+-+ ...+.|...++............ ......++++. ++.++
T Consensus       146 ~r~~~dGs~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly  222 (266)
T d1ijqa1         146 KKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  222 (266)
T ss_dssp             EEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEE
T ss_pred             eEeccCCCc--eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEE
Confidence            667766533  33333 233456889999877666655 45678999898654332222222 12345677776 34455


Q ss_pred             EEEeCCCcEEEEEcCCCceeeee
Q 019405          317 ASCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       317 ~s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      .+-..++.|...+..+|+....+
T Consensus       223 ~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEECCCCeEEEEECCCCcceEEE
Confidence            55557788888888887765544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.31  E-value=0.052  Score=43.50  Aligned_cols=111  Identities=7%  Similarity=-0.038  Sum_probs=72.5

Q ss_pred             cCCCCEEEEEeCCC-----------eEEEEEcCCCCc-eeEEEE-ecCCCeEEEEEcCCCceEEEEeCC-CCEEEEECCC
Q 019405          224 IDDHRKFVAGTNDH-----------QVRLYDTSAQRR-PVMSFD-FRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT  289 (341)
Q Consensus       224 ~~~~~~l~~~~~d~-----------~i~iwd~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~  289 (341)
                      ..+++.++.|+.+.           .+.+||..+++- ...... .+.......++.+++++++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            56788888877431           377899987542 122222 233334566788999999888765 6799999988


Q ss_pred             CeEEeEEeccccCceeEEEecCCCCEEEEEeCC------CcEEEEEcCCCc
Q 019405          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQ  334 (341)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~  334 (341)
                      ......-.......-..++..+||++++.++.+      ..+.+||..+.+
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            765432221112223457777899998888743      368999988764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.18  Score=38.00  Aligned_cols=162  Identities=6%  Similarity=-0.106  Sum_probs=97.3

Q ss_pred             CceEEEEecCCCCEEE-EeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CC--e
Q 019405          163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q  238 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~--~  238 (341)
                      ..+..++++.-+..|+ +-...+.|.+.++........+....         .....+++  .|...++.-... .+  .
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l---------~~p~~l~v--dp~~g~ly~t~~~~~~~~  147 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL---------VNPRGIVT--DPVRGNLYWTDWNRDNPK  147 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SSEEEEEE--ETTTTEEEEEECCSSSCE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccc---------cCCcEEEE--ecccCcEEEeecCCCCcE
Confidence            4577888886565555 44556789999987543322222111         23677888  565655554332 22  3


Q ss_pred             EEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEE-eCCCCEEEEECCCCeEEeEEeccccCceeEEEecCCCCEEE
Q 019405          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  317 (341)
                      |.--++..... .......-.....+++.+.++.|+.. ...+.|...|+........+.+. . ...+|++. ++.+..
T Consensus       148 I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~-~P~~lav~-~~~lYw  223 (263)
T d1npea_         148 IETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY-GKNLYY  223 (263)
T ss_dssp             EEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE-TTEEEE
T ss_pred             EEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-C-CcEEEEEE-CCEEEE
Confidence            44445554332 22222233456789999877777655 45678999998755444344442 2 34578875 444555


Q ss_pred             EEeCCCcEEEEEcCCCceeeee
Q 019405          318 SCGLDSYLRFWDIKTRQLLSAV  339 (341)
Q Consensus       318 s~~~dg~v~iwd~~~~~~~~~~  339 (341)
                      +-...+.|...|..+++.+..+
T Consensus       224 td~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         224 TDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCEEEEEECCCCccceEE
Confidence            5556788999999998877655

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.21  Score=37.68  Aligned_cols=253  Identities=11%  Similarity=0.005  Sum_probs=129.3

Q ss_pred             eeeecCCCCeEEEEEecCccCccceeeeccCCCCCceeEEEeccCCCCCceEEE-EccCCeEEEeeCCCCcchheeeccC
Q 019405           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAV-ARKNGLTDILNPLNGDLRVAISNAG   95 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~   95 (341)
                      .+-++..+.|+...+.............+..+...+..++|-....    .|.- -..++.|+..++..+.....+..  
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~----~iywsd~~~~~I~~~~l~g~~~~~v~~~--   76 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK----VVYWTDISEPSIGRASLHGGEPTTIIRQ--   76 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT----EEEEEETTTTEEEEEESSSCCCEEEECT--
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCC----EEEEEECCCCeEEEEEcccCCcEEEEEe--
Confidence            4455566778878876542221111111222222233344443222    4444 45667888888865443322221  


Q ss_pred             CCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEecCCCC
Q 019405           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (341)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~  175 (341)
                            ......++++-...++       ..++-...+.+.+.+++...        ...+.. ........++++|...
T Consensus        77 ------~~~~p~~iAvD~~~~~-------lY~~d~~~~~I~~~~~dg~~--------~~~l~~-~~l~~p~~l~vdp~~g  134 (263)
T d1npea_          77 ------DLGSPEGIALDHLGRT-------IFWTDSQLDRIEVAKMDGTQ--------RRVLFD-TGLVNPRGIVTDPVRG  134 (263)
T ss_dssp             ------TCCCEEEEEEETTTTE-------EEEEETTTTEEEEEETTSCS--------CEEEEC-SSCSSEEEEEEETTTT
T ss_pred             ------ccccccEEEEeccCCe-------EEEeccCCCEEEEEecCCce--------EEEEec-ccccCCcEEEEecccC
Confidence                  1133445554222221       44454556677666654221        111111 1224577889998777


Q ss_pred             EEEEeeC---CCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 019405          176 FSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPV  251 (341)
Q Consensus       176 ~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~  251 (341)
                      +++....   ...|.--++........... .        -.....+++  .+..+.|..+ ...+.|...|+..... .
T Consensus       135 ~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~-~--------~~~P~glai--D~~~~~lYw~d~~~~~I~~~~~~g~~~-~  202 (263)
T d1npea_         135 NLYWTDWNRDNPKIETSHMDGTNRRILAQD-N--------LGLPNGLTF--DAFSSQLCWVDAGTHRAECLNPAQPGR-R  202 (263)
T ss_dssp             EEEEEECCSSSCEEEEEETTSCCCEEEECT-T--------CSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTEEEE-E
T ss_pred             cEEEeecCCCCcEEEEecCCCCCceeeeee-c--------ccccceEEE--eecCcEEEEEeCCCCEEEEEECCCCCe-E
Confidence            7664432   22344445543222111111 1        133678888  6666666544 5678899999876432 2


Q ss_pred             EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEeccccCceeEEEecC
Q 019405          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (341)
Q Consensus       252 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~  311 (341)
                      ..+.+-. ...++++. ++.+..+-...+.|...|..+++.+..+..........++..+
T Consensus       203 ~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         203 KVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            2333322 34577775 3334444446688999999999887766533244555666544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.96  E-value=0.16  Score=36.39  Aligned_cols=150  Identities=14%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             eEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeC-CCeEEEEE
Q 019405          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYD  243 (341)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~~i~iwd  243 (341)
                      |.+++.. +.+...+|+......+|-++.|+...-...+.-....--....|..+.+. .++..-+.++.. .|.+++++
T Consensus       106 I~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         106 ILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeee-cCCcceEEEEecccCCEEEec
Confidence            4444543 45667788887788888888775433222111100000001223333333 222222333333 45555554


Q ss_pred             cCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeC---CCCEEEEECCCCeEEe-EEec-----cccCceeEEEecCCCC
Q 019405          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLG-CFIG-----KCSGSIRSIARHPTLP  314 (341)
Q Consensus       244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~-~~~~-----~~~~~i~~~~~~~~~~  314 (341)
                      .            .++.++.....+..+. +++-.   +....-+|+++++--. .++.     ...-.|+-+-+.|+++
T Consensus       184 p------------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~  250 (313)
T d2hu7a1         184 S------------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR  250 (313)
T ss_dssp             C------------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred             C------------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc
Confidence            3            3344444445554433 22221   1111133666543221 1111     1123455555777777


Q ss_pred             EEEEEeCCCcEEEEE
Q 019405          315 IIASCGLDSYLRFWD  329 (341)
Q Consensus       315 ~l~s~~~dg~v~iwd  329 (341)
                      +++.+-.||.-++|.
T Consensus       251 L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         251 LAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEecCCchheee
Confidence            777777777777765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.36  Score=39.28  Aligned_cols=99  Identities=15%  Similarity=0.079  Sum_probs=56.2

Q ss_pred             CCeEEEEEcCCCCc-eeEEEEe-cCCCeEEEEEcCCCceEEEEe-CCC--CEEEEECCCCeEEeEEeccccCceeEEEec
Q 019405          236 DHQVRLYDTSAQRR-PVMSFDF-RETPIKAVAEEPDSFNIYIGN-GSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (341)
Q Consensus       236 d~~i~iwd~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~  310 (341)
                      ++.|...++..... ....+-. +...+..-.+...+.+|+... .++  .|+++++.+++....+... .+.|..+...
T Consensus       310 ~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~sv~~~~~~  388 (430)
T d1qfma1         310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQ  388 (430)
T ss_dssp             TCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECC
T ss_pred             cceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCC-CceEeeccCC
Confidence            35666667665332 1233333 444454434444444565544 443  4889999888776555444 5566666665


Q ss_pred             CCCCEEE-E-EeC--CCcEEEEEcCCCce
Q 019405          311 PTLPIIA-S-CGL--DSYLRFWDIKTRQL  335 (341)
Q Consensus       311 ~~~~~l~-s-~~~--dg~v~iwd~~~~~~  335 (341)
                      ++...+. + .|.  =.++.-+|+.+++.
T Consensus       389 ~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         389 KKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             TTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             CCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            6655333 2 222  25788999998854

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.33  Score=38.62  Aligned_cols=148  Identities=11%  Similarity=0.049  Sum_probs=87.6

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCC-CCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~i  241 (341)
                      ....-+++++...+++.|+.+ .+.+..+..-+......... ...... ....|..++|  +  ++.|+.. .++.+..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vaf--s--~d~l~v~-~~~~l~~  109 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCF--H--GDQVLVS-TRNALYS  109 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEE--E--TTEEEEE-ESSEEEE
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEe--e--CCEEEEE-eCCCEEE
Confidence            345677888888888888877 46777643211100000000 000000 0123778888  3  3445554 4567888


Q ss_pred             EEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEeEEecc----ccCceeEEEecCCCCEEE
Q 019405          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTLPIIA  317 (341)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~  317 (341)
                      ++...... ......-..++..+.++|.  .++....++.+.++++.+++......+-    -.+.+.+++|++.|..++
T Consensus       110 ~~~~~l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         110 LDLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             EEeecccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            88776443 3344444567888888876  4566677899999999887543221110    135688889988888887


Q ss_pred             EEe
Q 019405          318 SCG  320 (341)
Q Consensus       318 s~~  320 (341)
                      ++.
T Consensus       187 ~~~  189 (381)
T d1xipa_         187 AWR  189 (381)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            764

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.45  E-value=0.4  Score=37.23  Aligned_cols=250  Identities=10%  Similarity=0.068  Sum_probs=128.2

Q ss_pred             eeeecCCCCeEEEEEecC-ccCccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeEE---EeeCCCCc------
Q 019405           17 ALTFDSLGLIKVIEARGE-HGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTD---ILNPLNGD------   86 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i~---iw~~~~~~------   86 (341)
                      .++-+.+|.||...+..- .++....  .+++.+ .+..+..+....    .|+.=+..|+++   +|++..+.      
T Consensus         8 ~v~lS~~GyiKR~~~~~~~~~~~~~~--~~k~~D-~v~~~~~~~t~d----~ll~fT~~Grvy~l~v~eiP~~~~~s~G~   80 (323)
T d1wp5a_           8 IVTVTKDGYVKRTSLRSYAASNGQDF--AMKDTD-RLLAMLEMNTKD----VLLLFTNKGNYLYCPVHELPDIRWKDLGQ   80 (323)
T ss_dssp             EEEEETTCEEEEEEHHHHHHTTTCCC--CCCTTC-CEEEEEEEETTS----EEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred             EEEEeCCCeEEEeeHHHhhhcCCCCC--cccCCc-eEEEEEEEcCCC----EEEEEecCCEEEEEeeccCcccccccccc
Confidence            678899999998776542 0110011  232222 222222221111    245445567644   45554322      


Q ss_pred             chheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceE
Q 019405           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (341)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~  166 (341)
                      .+..+-.      -..+..++.+...+...     .+..++..+..|.++...+......  ...+.+....+..+..+.
T Consensus        81 pi~~ll~------l~~~e~ii~~~~~~~~~-----~~~~l~~~Tk~G~iKr~~l~~f~~~--~~~~g~~~i~L~~~D~l~  147 (323)
T d1wp5a_          81 HIANIIP------IDRDEEIIKAIPINDFE-----LNGYFLFVTRNGMVKKTELKHYKAQ--RYSKPLTGINLKNDDQVV  147 (323)
T ss_dssp             EGGGTSC------CCTTCCEEEEEEESCTT-----SSCEEEEEETTSEEEEEEGGGGCCS--CCSSCEECSCCCTTCCEE
T ss_pred             cceeeec------ccCCcceEEEeeccccc-----cceeEEEEeehhheeeccHHHhhhh--hccchhhhcccccccccc
Confidence            2221111      12334555554443321     1238899999999998887543211  012233444555566777


Q ss_pred             EEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      .+....+...++.++..|.+..++...-..... .......+.+.....+-+.... .+++..|++.+..|..+.-.+..
T Consensus       148 ~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr-~a~GV~~ikL~~~D~vv~~~~~-~~~~~~ll~~T~~G~gKr~~~~e  225 (323)
T d1wp5a_         148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGG
T ss_pred             ceeccCCCeEEEEEEecceeeEeecccccccCc-ccccccccccccccccchhhhc-cccccceeeeeeeheeecccchh
Confidence            777777777888889999999998764322210 0111111222222444444332 55667888889999988876554


Q ss_pred             CCc------eeEEEEe---cCCCeEEEEEcCCCceEEEEeCCCCEEEEECC
Q 019405          247 QRR------PVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (341)
Q Consensus       247 ~~~------~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~  288 (341)
                      ...      -+..++.   ....+..+....+...|+..+..|.+.-.++.
T Consensus       226 ~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         226 FEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             SCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             hccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            211      1122211   12335455444444456666666766555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.8  Score=36.29  Aligned_cols=138  Identities=13%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iw  242 (341)
                      ..|..++++.+  .++.. .++.+..++...-..........         ..+..+.+  .|  ..++....++.+.++
T Consensus        87 p~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~---------~~~~~~~~--~p--~~~~l~~~~~~~~~~  150 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKN--VN--NTLVILNSVNDLSAL  150 (381)
T ss_dssp             TTEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEE--CS--SEEEEEETTSEEEEE
T ss_pred             CCeEEEEeeCC--EEEEE-eCCCEEEEEeecccccccccccc---------ccccceec--CC--ceeEEEecCCCEEEE
Confidence            36888999754  44443 44568888876543332222111         23566666  44  456677789999999


Q ss_pred             EcCCCCc-ee----EEEEecCCCeEEEEEcCCCceEEEEeCCCCEEEE-ECCCCeEEeEEeccccCceeEEEecCCCCEE
Q 019405          243 DTSAQRR-PV----MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV-DIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (341)
Q Consensus       243 d~~~~~~-~~----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw-d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  316 (341)
                      ++...+. ++    ..+. -...+.+++|++.|..++++..++ ..+- ++.....+...... ...|.++.|-.+..++
T Consensus       151 ~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~-~~~v~sI~WL~~~~F~  227 (381)
T d1xipa_         151 DLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFL  227 (381)
T ss_dssp             ETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEE
T ss_pred             EeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCC-CcceeEEEEecCceEE
Confidence            9987652 11    1112 235577788888887777764321 1110 11110000000011 3467788888766665


Q ss_pred             EEE
Q 019405          317 ASC  319 (341)
Q Consensus       317 ~s~  319 (341)
                      +.-
T Consensus       228 vvy  230 (381)
T d1xipa_         228 AVF  230 (381)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.02  E-value=1  Score=35.16  Aligned_cols=162  Identities=7%  Similarity=-0.011  Sum_probs=85.9

Q ss_pred             EEEecCCCCEEEEeeC------------CCeEEEEECCCCceee-ec--CCCCCCccCccCCeeeeEEEEEecCCCC-EE
Q 019405          167 FSKVDISEKFSLFGGK------------GVEVNVWDLDKCEKIW-TA--KPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (341)
Q Consensus       167 ~~~~~~~~~~l~~~~~------------d~~v~i~d~~~~~~~~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l  230 (341)
                      .+...|++..+++++.            .|.|.++|+.+.+... .+  ......... .+   ...+.....+++. +|
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~-f~---PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS-FN---PHGISTFIDDDNTVYL  114 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGG-CC---EEEEEEEECTTCCEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcc-ee---ccceeEEEcCCCcEEE
Confidence            3455566655555432            4889999987643221 11  111111000 01   2333432244554 34


Q ss_pred             EEEe---CCCeEEEEEcCCCCceeEEEEe----cCCCeEEEEEcCCCceEEEEeC---------------CCCEEEEECC
Q 019405          231 VAGT---NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIR  288 (341)
Q Consensus       231 ~~~~---~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~g~~---------------dg~i~iwd~~  288 (341)
                      ++..   ...+|.+|++......+.-...    .....+.+++..++.++++-..               -+...+|...
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4432   4567889988654321221111    1234678888888887777211               1223444443


Q ss_pred             CCeEEeEEeccccCceeEEEecCCCCEE-EEEeCCCcEEEEEcCCCc
Q 019405          289 TGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLRFWDIKTRQ  334 (341)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~  334 (341)
                      .++......+  -..-+.++++|++++| ++-+..+.|+.|++...+
T Consensus       195 ~~~~~~~~~~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         195 PNDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             SSCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCceEEEcCC--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            3333222222  3567899999999865 455567889999987543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.73  E-value=1.5  Score=35.29  Aligned_cols=93  Identities=9%  Similarity=0.019  Sum_probs=57.0

Q ss_pred             cCCCCEEEEEeC-C----CeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEeCC----------------CCE
Q 019405          224 IDDHRKFVAGTN-D----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------------GDL  282 (341)
Q Consensus       224 ~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----------------g~i  282 (341)
                      +|++++++.+-. +    -.|+++|+.+++..-..+..  .....++|.++++.|+-...+                ..|
T Consensus       133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v  210 (430)
T d1qfma1         133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKL  210 (430)
T ss_dssp             CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred             cCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceE
Confidence            899998885432 2    36999999997642223322  123568899999877643322                247


Q ss_pred             EEEECCCCeE--EeEEeccc-cCceeEEEecCCCCEEEE
Q 019405          283 ASVDIRTGKL--LGCFIGKC-SGSIRSIARHPTLPIIAS  318 (341)
Q Consensus       283 ~iwd~~~~~~--~~~~~~~~-~~~i~~~~~~~~~~~l~s  318 (341)
                      +.+.+.+...  ...+.... ...+..+..++++++++.
T Consensus       211 ~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             EEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            7777766522  22233221 234667778999997654

>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: DNA gyrase A C-terminal domain
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=91.31  E-value=2.3  Score=32.40  Aligned_cols=214  Identities=10%  Similarity=0.043  Sum_probs=107.8

Q ss_pred             eeeecCCCCeEEEEEecCc---c-CccceeeeccCCCCCceeEEEeccCCCCCceEEEEccCCeE---EEeeCCCCcchh
Q 019405           17 ALTFDSLGLIKVIEARGEH---G-GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLT---DILNPLNGDLRV   89 (341)
Q Consensus        17 ~~~~~~~g~i~~~~~~~~~---~-g~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~dg~i---~iw~~~~~~~~~   89 (341)
                      ++..+.+|.+|......-.   . +.-.....+.+++.-+.....+...     .|+.-+..|.+   ++|++.......
T Consensus         4 vv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~v~~~~~~~t~d-----~ll~fT~~G~~~~i~~~~ip~~~~~~   78 (304)
T d1suua_           4 VVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHD-----YLFMISNEGKLYLINAYEIKDSSRAS   78 (304)
T ss_dssp             EEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTC-----EEEEEETTSEEEEEEGGGSCC-----
T ss_pred             EEEEECCCeEEEeeHHHHhhccCCCCCcccccccCCCEEEEEEEecCCC-----eEEEEechHhhcChhhhhcccccccc
Confidence            5788899999988765531   0 1001111343444434333333322     35555556764   556655322111


Q ss_pred             eeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEE
Q 019405           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (341)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~  169 (341)
                      .=........-.....+..+.......     ....++..+.+|.++-..+..-...   ....+.......+..+..+.
T Consensus        79 ~G~~i~~l~~l~~~e~i~~~~~~~~~~-----~~~~l~~~T~~G~iKr~~l~~f~~~---~~~~~~a~kL~~~D~lv~v~  150 (304)
T d1suua_          79 KGQNISELINLGDQEEILTIKNSKDLT-----DDAYLLLTTASGKIARFESTDFKAV---KSRGVIVIKLNDKDFVTSAE  150 (304)
T ss_dssp             --CBGGGTSCCCTTCCEEEEEEESCCC-----TTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCEEEEE
T ss_pred             cccccceeeeecccccccccccccccc-----ccceEEEEEehhhhhhcccchhhcc---ccccceeecccchhhccccc
Confidence            100000000012234555444332211     1227899999999988877543211   11123344444455555566


Q ss_pred             ecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEEeCCCeEEEEEcCC
Q 019405          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (341)
Q Consensus       170 ~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  246 (341)
                      ....+..++..+..|....++...-..... .......+.+.....+-.+..  .+++.++++.+.+|..+...+..
T Consensus       151 ~~~~~~~v~~~t~~G~~lrf~~~~v~~~gr-~a~Gv~~i~L~~~d~v~~~~~--~~~~~~ll~iT~~G~gKr~~~~e  224 (304)
T d1suua_         151 IVFKDEKVICLSKKGSAFIFNSRDVRLTNR-GTQGVCGMKLKEGDLFVKVLS--VKENPYLLIVSENGYGKRLNMSK  224 (304)
T ss_dssp             EECTTCEEEEEETTSEEEEEEGGGSCBCCT-TBCCEECCCCCTTCCEEEEEE--CTTCSEEEEEETTSEEEEEEGGG
T ss_pred             cccccceeEeeccccceeeeccccccccCc-cccceeeecccccccceeeee--ccCCceEEEEecCCceEEccchh
Confidence            666667778888899988888764222110 001111111112233544444  56677888999999999888765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=2.6  Score=31.28  Aligned_cols=161  Identities=9%  Similarity=-0.022  Sum_probs=93.1

Q ss_pred             cCCceEEEEecCCCCEEEEee-CCCeEEEEECCCCce---eeecCCCCCCccCccCCeeeeEEEEEecCCCC-EEEEEeC
Q 019405          161 ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTN  235 (341)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~  235 (341)
                      ....+..+++++..+.++-.. ..+.|.-.++.....   ...+....        ...+..+++  .+.+. +..+-..
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~--------~~~p~glAv--D~~~~~lY~~d~~   97 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--------IQAPDGLAV--DWIHSNIYWTDSV   97 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--------CSCCCEEEE--ETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC--------CCCcceEEE--eeccceEEEEecC
Confidence            345677889988777776553 456676666543111   11111110        122556777  54444 4445556


Q ss_pred             CCeEEEEEcCCCCceeEEEEecCCCeEEEEEcCCCceEEEEe--CCCCEEEEECCCCeEEeEEeccccCceeEEEecCCC
Q 019405          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (341)
Q Consensus       236 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~  313 (341)
                      .+.|.+.++..... ...+.........++++|...+|+...  ..+.|.-.++..... ..+....-....++++.+.+
T Consensus        98 ~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~~~p~gl~iD~~~  175 (266)
T d1ijqa1          98 LGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLS  175 (266)
T ss_dssp             TTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTT
T ss_pred             CCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccccceeeEEEeeccc
Confidence            77899999886543 344444556678999998665665443  334576677653333 23322213567889999877


Q ss_pred             CEEEEE-eCCCcEEEEEcCCC
Q 019405          314 PIIASC-GLDSYLRFWDIKTR  333 (341)
Q Consensus       314 ~~l~s~-~~dg~v~iwd~~~~  333 (341)
                      ..|.-+ ...+.|...++...
T Consensus       176 ~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         176 GRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEEecCCcCEEEEEECCCC
Confidence            755544 55678888887643

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.09  E-value=5.2  Score=30.66  Aligned_cols=251  Identities=11%  Similarity=0.073  Sum_probs=125.5

Q ss_pred             CCceEEEEccCCeEEEeeCCCCcchheeeccCCCCCCCCCCceeeEeeeeccccccccccceeEEEcccceeEEEEeeec
Q 019405           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (341)
Q Consensus        64 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~i~~~~~~  143 (341)
                      +.+.+++-+.+|.|+--.+.+.+...    ..... ...++.+..+...+..+        .++.-+..|.+....+..-
T Consensus         4 ~E~v~v~lS~~GyiKR~~~~~~~~~~----~~~~~-~k~~D~v~~~~~~~t~d--------~ll~fT~~Grvy~l~v~ei   70 (323)
T d1wp5a_           4 SEDVIVTVTKDGYVKRTSLRSYAASN----GQDFA-MKDTDRLLAMLEMNTKD--------VLLLFTNKGNYLYCPVHEL   70 (323)
T ss_dssp             CCEEEEEEETTCEEEEEEHHHHHHTT----TCCCC-CCTTCCEEEEEEEETTS--------EEEEEETTSEEEEEEGGGS
T ss_pred             CCCEEEEEeCCCeEEEeeHHHhhhcC----CCCCc-ccCCceEEEEEEEcCCC--------EEEEEecCCEEEEEeeccC
Confidence            34578888999999865443211000    00000 12345665555555555        5666666777655544333


Q ss_pred             ccccccCCce--EEEEEeecCCceEEE-Eec--CCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeE
Q 019405          144 KVSAESSCST--VKSWNVCASGTIAFS-KVD--ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (341)
Q Consensus       144 ~~~~~~~~~~--v~~~~~~~~~~i~~~-~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (341)
                      +..+....|.  ..+.....+..+..+ ...  +...+++..+..|.++..++........-.  ......+.....+..
T Consensus        71 P~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~--g~~~i~L~~~D~l~~  148 (323)
T d1wp5a_          71 PDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSK--PLTGINLKNDDQVVD  148 (323)
T ss_dssp             CBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSS--CEECSCCCTTCCEEE
T ss_pred             cccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccc--hhhhccccccccccc
Confidence            3222111111  011122223333333 333  245788888999999998875321100000  000011112244556


Q ss_pred             EEEEecCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEEEe-cCCCeEEE-EEcCCCceEEEEeCCCCEEEEECCCC
Q 019405          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDF-RETPIKAV-AEEPDSFNIYIGNGSGDLASVDIRTG  290 (341)
Q Consensus       219 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~-~~~~v~~~-~~~~~~~~l~~g~~dg~i~iwd~~~~  290 (341)
                      +..  ..+...++..+..|.+..|+...-.      .-++-++. ..+.+.+. ...+++..|++.+..|..+.-.+...
T Consensus       149 v~~--~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~  226 (323)
T d1wp5a_         149 VHL--TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF  226 (323)
T ss_dssp             EEE--ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             eec--cCCCeEEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhh
Confidence            666  4455678888999999999876421      11222222 22344443 44556677888888888777655321


Q ss_pred             -------eEEeEEe--ccccCceeEEEecCCCCEEEEEeCCCcEEEEEcC
Q 019405          291 -------KLLGCFI--GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (341)
Q Consensus       291 -------~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~v~iwd~~  331 (341)
                             +-+..++  ......|..+....+...|+..+..|.+.-.++.
T Consensus       227 ~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         227 EKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             ccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence                   1111121  1112345555555555566666677776655543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.70  E-value=6.7  Score=31.61  Aligned_cols=59  Identities=7%  Similarity=-0.194  Sum_probs=36.5

Q ss_pred             CceEEEEecCCCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEE
Q 019405          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (341)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (341)
                      ..-++|+|.|+++++++--..|.|++++..+++........... ...........++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~-~~~~ge~GLLgia~~   85 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV-NDADGQNGLLGFAFH   85 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC-CCTTSSCSEEEEEEC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccc-cccCCCCceeeEEeC
Confidence            45679999999998887655789999998776543222211100 001112457788994

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.89  E-value=8.8  Score=29.73  Aligned_cols=199  Identities=12%  Similarity=0.178  Sum_probs=108.3

Q ss_pred             eeEEEcccceeEEEEeeecccccccCCceEEEEEeecCCceEEEEe------cCCCCEEEEeeC----CCeEEEEECC-C
Q 019405          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV------DISEKFSLFGGK----GVEVNVWDLD-K  193 (341)
Q Consensus       125 ~l~~~~~~g~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~------~~~~~~l~~~~~----d~~v~i~d~~-~  193 (341)
                      .++...+.+-+.+|+++-..         +...   ..+.+..+..      .....-++.++.    ..+|.+|.+. .
T Consensus        42 lI~gTdK~~Gl~vYdL~G~~---------l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLEGKM---------LHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             EEEEEETTSCCEEEETTCCE---------EEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             EEEEEcCcCCEEEEcCCCcE---------EEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            66666677779999974222         2211   1233333332      222233444442    2368888775 2


Q ss_pred             CceeeecCCCCCCccCccCCeeeeEEEEEecCC-CC-EEEEEeCCCeEEEEEcCCCC------ceeEEEEecCCCeEEEE
Q 019405          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HR-KFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVA  265 (341)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~  265 (341)
                      ...+..+.........  ....+..+|+..++. +. ++++...+|.+..|.+....      ..++.+.. ...+-.|.
T Consensus       110 ~~~l~~~~~~~~p~~~--~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCV  186 (353)
T d1h6la_         110 NGTLQSITDPNRPIAS--AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMA  186 (353)
T ss_dssp             TTEEEECSCSSSCEEC--SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEE
T ss_pred             cccccccccccccccc--ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEE
Confidence            3333333332211000  012256666632443 43 45667788999888774311      23444543 35688899


Q ss_pred             EcCCCceEEEEeCCCCEEEEECC-----CCeEEeEEec-cccCceeEEEecC--CCC-EE-EEEeCCCcEEEEEcCC-Cc
Q 019405          266 EEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIG-KCSGSIRSIARHP--TLP-II-ASCGLDSYLRFWDIKT-RQ  334 (341)
Q Consensus       266 ~~~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~-~~~~~i~~~~~~~--~~~-~l-~s~~~dg~v~iwd~~~-~~  334 (341)
                      +.+....|+.+-.+.-|+.++..     .+..+....+ +..+.+..|+.-.  ++. +| +|.-.+++..+||..+ .+
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            99998899999887767666654     2233333322 2245677777543  333 44 4444678899999876 35


Q ss_pred             eeee
Q 019405          335 LLSA  338 (341)
Q Consensus       335 ~~~~  338 (341)
                      .+..
T Consensus       267 ~~g~  270 (353)
T d1h6la_         267 YVAD  270 (353)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            4444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=82.16  E-value=6.8  Score=27.93  Aligned_cols=153  Identities=16%  Similarity=0.122  Sum_probs=81.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceeeecCCCCCCccCccCCeeeeEEEEEecCCCCEEEEE------eCCCeEEEEEcCC
Q 019405          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG------TNDHQVRLYDTSA  246 (341)
Q Consensus       173 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~------~~d~~i~iwd~~~  246 (341)
                      +.++++.+...|.+.++-+..++.+.--+.+            |..... |.+.-.++...      -.-..|.+-++..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkeP------------I~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~   91 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREP------------INSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSR   91 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSC------------CSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEeccc------------ccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCC
Confidence            4457888888999999988776655433322            222211 11222222221      1112233333331


Q ss_pred             CCceeEEEEecC-CCeEEEEEcCCCceEEEEeCCCCEEEEECCCCeEEe--EEecc------ccCceeEEEec-CCCCEE
Q 019405          247 QRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFIGK------CSGSIRSIARH-PTLPII  316 (341)
Q Consensus       247 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~------~~~~i~~~~~~-~~~~~l  316 (341)
                      ... ...+..-. -.|.++++. +....++|+......+|-++.|++..  .+++.      ..+-|..+.+- ++.+-+
T Consensus        92 ~GE-E~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sf  169 (313)
T d2hu7a1          92 PGE-EQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSL  169 (313)
T ss_dssp             TTC-EEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             CCe-eeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceE
Confidence            111 11111111 234455543 33567789888899999888876533  22221      12345555543 333456


Q ss_pred             EEEeC-CCcEEEEEcCCCceeeeec
Q 019405          317 ASCGL-DSYLRFWDIKTRQLLSAVC  340 (341)
Q Consensus       317 ~s~~~-dg~v~iwd~~~~~~~~~~~  340 (341)
                      .++.. .|.+++++...|..-...|
T Consensus       170 F~adl~SG~lri~tpkeGS~~~ay~  194 (313)
T d2hu7a1         170 FTSNLSSGGLRVFDSGEGSFSSASI  194 (313)
T ss_dssp             EEEETTTEEEEEECCSSEEEEEEEE
T ss_pred             EEEecccCCEEEecCCCCcccceeE
Confidence            77776 8999999999887766554