Citrus Sinensis ID: 019425

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MFVLRVHSVDDNHPITIEEAGFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQSSPTNTRRHKKSSRRKN
ccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHcccEEEEEccccEEEEcccccEEHHHHHccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccc
cEEEEEEEccccccccccccEEEEEEEccccccccccccccccccEEEccccccccccccccccccEEEEEEccccccccHHHHHcHHHHHHHEEEEEEEEcccHHHHHHHHcccEEEEEcccccEEEccccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccc
mfvlrvhsvddnhpitieeagfctvsstatrsranpnpkfserrglVHLFrgtsqsyqqnpnsrstCIFVVavpnylssdEFVRFCGSHIDHVEELIFIRYkeghavrhwkdtqhwysldLRTQQIWDYVGDNYVHRLNqskadgklvemnspcmsheahcgtcecsedsgisgalfnSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTnmtdsdgikggtvlpvsyqqssptntrrhkkssrrkn
MFVLRVHsvddnhpitieeagfctvsstatrsranpnpkfserrgLVHLFRGTSqsyqqnpnsrsTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEakskresliPETVEKAVASKMQDIQNELDICEEAKKAVAdvnskliknqeimrkkfkeieereitslrlrdatilDLEEQIRDLTVYIEAQKTltnmtdsdgiKGGTvlpvsyqqssptntrrhkkssrrkn
MFVLRVHSVDDNHPITIEEAGFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQeimrkkfkeieereiTSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQSSPTNTRRHKKSSRRKN
*****V**VDDNHPITIEEAGFCTV*********************VHLF**************STCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLL*****************************LDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNM***********************************
*FVLRVHSVD****************************KFSERRGLVHLFRG**********SR*TCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSK*************************************KVEAIVDEYNRLLATQLETQR**************************************************************************************EEQIRDLTVYI********************************************
MFVLRVHSVDDNHPITIEEAGFCTVS***********PKFSERRGLVHLFRGT*********SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSY*******************
MFVLRVHSVDDNHPITIEEAGFCTVSSTAT*****PNPKFS*RRGLV*LFR*****Y*****SRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSP*********************ALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVS********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFVLRVHSVDDNHPITIEEAGFCTVSSTATRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAVPNYLSSDEFVRFCGSHIDHVEELIFIRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSEDSGISGALFNSKVEAIVDEYNRLLxxxxxxxxxxxxxxxxxxxxxRESLIPETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQSSPTNTRRHKKSSRRKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
O13747547 RING finger protein ETP1 yes no 0.598 0.372 0.334 8e-24
Q7Z569592 BRCA1-associated protein yes no 0.551 0.317 0.313 6e-22
Q95QN6590 Uncharacterized RING fing yes no 0.589 0.340 0.304 3e-21
P38748585 RING finger protein ETP1 yes no 0.621 0.362 0.330 5e-21
Q99MP8591 BRCA1-associated protein yes no 0.551 0.318 0.304 2e-20
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 Back     alignment and function desciption
 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 44/248 (17%)

Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
           RY + HA +H+ DT H Y+++L TQ++WDY GDNYVHRL QS+ DGKLVE+         
Sbjct: 284 RYHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVEL--------- 334

Query: 160 HCGTCECSEDSGISGALFNSKVEAIVD-----EYNRLLATQLETQRQYYESLLAEAKSK- 213
                  S D   SG   +S  E+ +      EY ++L +QLE+QR YYES L+    K 
Sbjct: 335 -------STDGKSSGWTGSSATESKLRDKMGLEYTQILVSQLESQRLYYESHLSNMSQKL 387

Query: 214 ---RESLIPET-VEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIE 269
               E L+ +T +  A ++   D+++ +DI E   K   D   ++    E ++  ++E +
Sbjct: 388 SRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEK 447

Query: 270 ERE------ITSLRLRDAT-----------ILDLEEQIRDLTVYIEAQKTLTNMTDSDGI 312
                    I +L  ++ T           I DL EQ+RDL   I A + +  M  S+ +
Sbjct: 448 SMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEEL 507

Query: 313 KGGT-VLP 319
           + GT VLP
Sbjct: 508 QNGTIVLP 515
May act as a cytoplasmic retention protein with a role in regulating nuclear transport.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 Back     alignment and function description
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis elegans GN=EEED8.16 PE=4 SV=1 Back     alignment and function description
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 Back     alignment and function description
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
225445567 470 PREDICTED: BRCA1-associated protein [Vit 0.662 0.480 0.739 4e-99
255572491 477 brca1-associated protein, putative [Rici 0.697 0.498 0.739 1e-97
224144167 486 predicted protein [Populus trichocarpa] 0.709 0.497 0.736 4e-97
356548484 484 PREDICTED: BRCA1-associated protein-like 0.709 0.5 0.713 1e-96
356562985 470 PREDICTED: BRCA1-associated protein-like 0.709 0.514 0.704 1e-94
449443061 487 PREDICTED: BRCA1-associated protein-like 0.692 0.484 0.7 7e-91
449517888 487 PREDICTED: BRCA1-associated protein-like 0.692 0.484 0.695 1e-90
297827885 488 zinc finger (ubiquitin-hydrolase) domain 0.706 0.493 0.648 1e-86
357478181 536 RING finger protein ETP1-like protein [M 0.674 0.429 0.686 1e-85
42569859 488 zinc finger (ubiquitin-hydrolase) domain 0.706 0.493 0.636 3e-85
>gi|225445567|ref|XP_002285333.1| PREDICTED: BRCA1-associated protein [Vitis vinifera] gi|297738981|emb|CBI28226.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 206/242 (85%)

Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
           RYKEGHA+RHWKD QH YSLDL  QQ+WDYVGD++VHRLNQSKADGKL  M+S CMS E 
Sbjct: 229 RYKEGHAIRHWKDAQHSYSLDLEKQQVWDYVGDSFVHRLNQSKADGKLAMMDSRCMSTEG 288

Query: 160 HCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIP 219
            CGT  C++DSGIS ALF+SKVEAIVDEYN LLAT++ETQRQYYESLL EAK+KRES + 
Sbjct: 289 DCGTYGCTDDSGISAALFSSKVEAIVDEYNHLLATEMETQRQYYESLLLEAKAKRESSVL 348

Query: 220 ETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLR 279
           E VEKAV SKMQDIQNEL+ C E KKAV+D+N KLIKNQ++ RKK KEIEEREI ++R +
Sbjct: 349 EAVEKAVTSKMQDIQNELEKCLEEKKAVSDINQKLIKNQDLCRKKVKEIEEREILAIRSK 408

Query: 280 DATILDLEEQIRDLTVYIEAQKTLTNMTDSDGIKGGTVLPVSYQQSSPTNTRRHKKSSRR 339
           D  ILDLEEQIRDLTVYIEAQKTL +MTDS+ IKGGT+LPV   QSS TNT+RH KS+RR
Sbjct: 409 DEKILDLEEQIRDLTVYIEAQKTLHHMTDSNDIKGGTLLPVPSNQSSSTNTKRHSKSNRR 468

Query: 340 KN 341
           ++
Sbjct: 469 RH 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572491|ref|XP_002527180.1| brca1-associated protein, putative [Ricinus communis] gi|223533445|gb|EEF35193.1| brca1-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224144167|ref|XP_002325207.1| predicted protein [Populus trichocarpa] gi|222866641|gb|EEF03772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548484|ref|XP_003542631.1| PREDICTED: BRCA1-associated protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356562985|ref|XP_003549748.1| PREDICTED: BRCA1-associated protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449443061|ref|XP_004139299.1| PREDICTED: BRCA1-associated protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517888|ref|XP_004165976.1| PREDICTED: BRCA1-associated protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827885|ref|XP_002881825.1| zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327664|gb|EFH58084.1| zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357478181|ref|XP_003609376.1| RING finger protein ETP1-like protein [Medicago truncatula] gi|355510431|gb|AES91573.1| RING finger protein ETP1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|42569859|ref|NP_181746.2| zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis thaliana] gi|312274868|gb|ADQ57814.1| BRIZ1 [Arabidopsis thaliana] gi|330254987|gb|AEC10081.1| zinc finger (ubiquitin-hydrolase) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2060045488 BRIZ1 "AT2G42160" [Arabidopsis 0.706 0.493 0.595 7.5e-101
TAIR|locus:2057469479 BRIZ2 "AT2G26000" [Arabidopsis 0.695 0.494 0.423 6.9e-59
DICTYBASE|DDB_G0270200687 DDB_G0270200 "BRCA1-associated 0.642 0.318 0.319 1.1e-31
POMBASE|SPAC16E8.13547 SPAC16E8.13 "ubiquitin-protein 0.665 0.414 0.316 4.3e-29
FB|FBgn0038686555 CG5555 [Drosophila melanogaste 0.665 0.409 0.273 3e-25
ASPGD|ASPL0000042460503 AN10251 [Emericella nidulans ( 0.659 0.447 0.300 8.6e-24
UNIPROTKB|F1NJH4556 BRAP "Uncharacterized protein" 0.700 0.429 0.259 2.6e-21
UNIPROTKB|F1NR06585 BRAP "Uncharacterized protein" 0.700 0.408 0.259 3.2e-21
ZFIN|ZDB-GENE-040718-168578 brap "BRCA1 associated protein 0.583 0.344 0.269 1.5e-18
UNIPROTKB|A6H716592 BRAP "BRAP protein" [Bos tauru 0.700 0.403 0.253 2.5e-18
TAIR|locus:2060045 BRIZ1 "AT2G42160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 757 (271.5 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 144/242 (59%), Positives = 182/242 (75%)

Query:   100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEA 159
             RYKEGH++RHWK+T H YSLDLRTQQIWDYVGD+YVHRLN SK DGK VEM++ C+SH+ 
Sbjct:   247 RYKEGHSIRHWKETHHCYSLDLRTQQIWDYVGDSYVHRLNHSKIDGKSVEMSTSCLSHQG 306

Query:   160 HCGTCECSEDSGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKSKRESLIP 219
              CG CECSED+GISGA+FNSKV++IV EYN LLA+QL+ QRQYYESL+ EA+SK+ES I 
Sbjct:   307 DCGLCECSEDTGISGAIFNSKVDSIVIEYNDLLASQLKGQRQYYESLIVEARSKQESSIA 366

Query:   220 ETVEKAVASKMQDIQNELDICEEAKKAVADVNSKLIKNQXXXXXXXXXXXXXXXTSLRLR 279
             E VE+ V + MQ++QN+++ CEE K  + +VN+KLIK Q                 L  +
Sbjct:   367 EAVEQIVVNTMQELQNKIEKCEEEKSGITEVNTKLIKEQDTWRKKAKEIEEREAALLGSK 426

Query:   280 DATILDLEEQIRDLTVYIEAQKTLTNMT-DSDGIKGGTVLPVSYQQSSPTNTRRHKKSSR 338
             D  I DL+EQIRD+TV+IEA+KTL  M+ D+DGI+ GTVLPV       ++ RR KKS+R
Sbjct:   427 DEMITDLQEQIRDITVFIEAKKTLKKMSSDTDGIREGTVLPVPISPEPVSSVRRQKKSNR 486

Query:   339 RK 340
             RK
Sbjct:   487 RK 488
GO:0003824 "catalytic activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IC
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0010029 "regulation of seed germination" evidence=IMP
GO:0046982 "protein heterodimerization activity" evidence=IDA
TAIR|locus:2057469 BRIZ2 "AT2G26000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270200 DDB_G0270200 "BRCA1-associated protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC16E8.13 SPAC16E8.13 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
FB|FBgn0038686 CG5555 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000042460 AN10251 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJH4 BRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NR06 BRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-168 brap "BRCA1 associated protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A6H716 BRAP "BRAP protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
pfam0214863 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolas 1e-10
cd1243782 cd12437, RRM_BRAP2_like, RNA recognition motif in 6e-06
smart0029050 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal H 5e-05
COG3853386 COG3853, TelA, Uncharacterized protein involved in 0.004
>gnl|CDD|216903 pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein Back     alignment and domain information 
 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQ 140
           RY  GHA++H+++T H  ++ L T ++W Y  D+YVH    
Sbjct: 23  RYSNGHALKHYEETGHPLAVSLETGRVWCYACDDYVHDPVL 63

Length = 63
>gnl|CDD|240883 cd12437, RRM_BRAP2_like, RNA recognition motif in BRCA1-associated protein (BRAP2) and similar proteins Back     alignment and domain information
>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>gnl|CDD|226371 COG3853, TelA, Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 100.0
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 99.29
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.93
smart0029050 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like 98.33
cd02669 440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 98.28
PF07576110 BRAP2: BRCA1-associated protein 2; InterPro: IPR01 97.97
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 97.81
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 97.72
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 97.26
PF00038312 Filament: Intermediate filament protein; InterPro: 96.57
PF00038312 Filament: Intermediate filament protein; InterPro: 94.61
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 94.48
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 93.61
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 92.47
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 92.44
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 92.11
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 91.92
PF06785 401 UPF0242: Uncharacterised protein family (UPF0242); 91.57
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.56
PHA02562 562 46 endonuclease subunit; Provisional 91.14
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 90.86
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.73
KOG0964 1200 consensus Structural maintenance of chromosome pro 89.18
PRK09039343 hypothetical protein; Validated 88.99
TIGR0244965 conserved hypothetical protein TIGR02449. Members 88.87
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.74
PRK00409 782 recombination and DNA strand exchange inhibitor pr 88.73
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 88.55
KOG1655218 consensus Protein involved in vacuolar protein sor 88.08
TIGR03825255 FliH_bacil flagellar assembly protein FliH. This b 87.18
PF09731 582 Mitofilin: Mitochondrial inner membrane protein; I 86.46
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 86.32
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.31
KOG0971 1243 consensus Microtubule-associated protein dynactin 85.77
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 85.4
PF05700221 BCAS2: Breast carcinoma amplified sequence 2 (BCAS 85.32
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 85.27
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 84.97
PRK11637 428 AmiB activator; Provisional 84.83
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 84.59
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 84.53
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 84.38
COG3937108 Uncharacterized conserved protein [Function unknow 84.32
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 83.79
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 83.52
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 83.49
PRK09039 343 hypothetical protein; Validated 83.42
PRK02224 880 chromosome segregation protein; Provisional 83.31
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 83.1
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 82.93
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 82.8
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 82.47
PRK1542279 septal ring assembly protein ZapB; Provisional 82.3
PRK10361 475 DNA recombination protein RmuC; Provisional 82.1
PF10226195 DUF2216: Uncharacterized conserved proteins (DUF22 81.69
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 81.63
KOG1103 561 consensus Predicted coiled-coil protein [Function 81.58
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 81.37
PF14662193 CCDC155: Coiled-coil region of CCDC155 81.35
PRK12704 520 phosphodiesterase; Provisional 81.32
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 81.25
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 81.21
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 81.01
PF09304107 Cortex-I_coil: Cortexillin I, coiled coil; InterPr 80.87
PF09728 309 Taxilin: Myosin-like coiled-coil protein; InterPro 80.83
PRK10884206 SH3 domain-containing protein; Provisional 80.83
KOG0996 1293 consensus Structural maintenance of chromosome pro 80.64
KOG0996 1293 consensus Structural maintenance of chromosome pro 80.6
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.37
TIGR01069 771 mutS2 MutS2 family protein. Function of MutS2 is u 80.23
PF09731 582 Mitofilin: Mitochondrial inner membrane protein; I 80.17
PF06705247 SF-assemblin: SF-assemblin/beta giardin 80.12
PF0682554 HSBP1: Heat shock factor binding protein 1; InterP 80.06
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-77  Score=589.82  Aligned_cols=318  Identities=42%  Similarity=0.680  Sum_probs=274.2

Q ss_pred             CeeEEeec---cCCCCCcCc-ccccccccccCc---cccccCCCCeeEeeeeeEEeccCCCCCCCCCCCCCcccceeccc
Q 019425            1 MFVLRVHS---VDDNHPITI-EEAGFCTVSSTA---TRSRANPNPKFSERRGLVHLFRGTSQSYQQNPNSRSTCIFVVAV   73 (341)
Q Consensus         1 ~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~---~~~~~sgnp~v~~t~Gi~Hlf~~~~~~s~~~pv~r~~~lcilav   73 (341)
                      ||+.++|+   ++++.++++ .+..|.+..+..   ++.|+||||.|++|+|||||||.+..+++..+. +++|||||||
T Consensus         4 v~~e~~~~~~~~~ssr~i~~r~~d~g~~~~s~~~~~~~~~~sgnp~ve~t~GiiHLyk~n~~~s~~~~~-~~~mLcilaV   82 (493)
T KOG0804|consen    4 VIIESLVSEPLVDSSREISGRSEDSGFTSASERLPSQIKYSSGNPSVEETHGIIHLYKKNSHSSLKNAS-SSTMLCILAV   82 (493)
T ss_pred             chhhhcccCcccccccccCCcccccccchhhhccCCcccccCCCCceeeeceeEEEEecCcccccccCC-CCcEEEEEec
Confidence            56788887   999999999 332244444433   445999999999999999999999998888875 4999999999


Q ss_pred             CCCCChhhhcccccccccceeeeeee------------------------------------------------------
Q 019425           74 PNYLSSDEFVRFCGSHIDHVEELIFI------------------------------------------------------   99 (341)
Q Consensus        74 P~~~t~~dlc~fC~~~~e~w~cL~c~------------------------------------------------------   99 (341)
                      |+|||++|+|+||+++...|.+++++                                                      
T Consensus        83 P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V~~ve~~~s~  162 (493)
T KOG0804|consen   83 PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYVDRVEVTESE  162 (493)
T ss_pred             cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEEEEEEEEecc
Confidence            99999999999999999999999985                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 019425          100 --------------------------------------------------------------------------------   99 (341)
Q Consensus       100 --------------------------------------------------------------------------------   99 (341)
                                                                                                      
T Consensus       163 d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~Lwi  242 (493)
T KOG0804|consen  163 DGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLWI  242 (493)
T ss_pred             cCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEEE
Confidence                                                                                            


Q ss_pred             ----------ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeeccccCCCCceeeecCCCCCcCCCCCCCccCCC
Q 019425          100 ----------RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMSHEAHCGTCECSED  169 (341)
Q Consensus       100 ----------Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl~q~k~DGKlVEl~~~~~~~~~~~g~~~~~~~  169 (341)
                                ||+.|||.+||++|+|+|||+++|+|||||+||+|||||+|+++|||+||+.+.+.++            
T Consensus       243 cliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYVhRl~~~~~dGklve~~~~~~~~------------  310 (493)
T KOG0804|consen  243 CLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYVHRLPQSKTDGKLVESSTEGDDS------------  310 (493)
T ss_pred             EEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhhhhccccCCCCceEEeccccccc------------
Confidence                      9999999999999999999999999999999999999999999999999987654211            


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-------------------cccHHHHHHHHHHH
Q 019425          170 SGISGALFNSKVEAIVDEYNRLLATQLETQRQYYESLLAEAKS-KRE-------------------SLIPETVEKAVASK  229 (341)
Q Consensus       170 ~~~~ea~~~~Kie~i~~EY~~LLtSQLEsQR~yyE~~l~~~~~-~~~-------------------~~i~~~~ek~~~~k  229 (341)
                             ...+.+.+.+||++||+|||||||.|||+.+.++.+ +.+                   ..+.++..+.++.+
T Consensus       311 -------~~~~~~~~~~~~s~ll~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k  383 (493)
T KOG0804|consen  311 -------RKDDCDSLELEYSPLLTSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERK  383 (493)
T ss_pred             -------cccCcceEEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence                   135677888999999999999999999988888776 211                   11233455667899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHhHhHhhhhHHHHhccCCC
Q 019425          230 MQDIQNELDICEEAKKAVADVNSKLIKNQEIMRKKFKEIEEREITSLRLRDATILDLEEQIRDLTVYIEAQKTLTNMTDS  309 (341)
Q Consensus       230 ~~~l~~kl~kl~~E~~~~~~ln~~L~~nq~~~~~k~~~lee~~~~~~~~k~~~i~dL~EQlrDLmf~leaq~ki~~~~~~  309 (341)
                      +++++.|++++.+|+++++++|++|++||..|+.+++++++++++++..+|++|+||+||||||||||++|+||+  ++.
T Consensus       384 ~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqklk--~dt  461 (493)
T KOG0804|consen  384 LQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKLK--SDT  461 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhhh--cch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998  345


Q ss_pred             CCcCCcEEeecCCCCCCCCCCcCCCCCCCCC
Q 019425          310 DGIKGGTVLPVSYQQSSPTNTRRHKKSSRRK  340 (341)
Q Consensus       310 ~ei~~Gti~~~~~~~~~~~~~~~~kk~~~r~  340 (341)
                      ++|++|||++++...+++++.+++||++||+
T Consensus       462 ~eIqegtI~~~~~s~~~~~~~~~kkk~nrrk  492 (493)
T KOG0804|consen  462 DEIQEGTILITQISPSSSSSVKSKKKSNRRK  492 (493)
T ss_pred             hhhcCceeeccCCCCCccccccchhhhcccC
Confidence            6999999998776666666566666777765

>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening [] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03825 FliH_bacil flagellar assembly protein FliH Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>COG3937 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 3e-12
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 6e-12
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 2e-11
2ida_A102 Hypothetical protein; zinc binding protein, struct 6e-06
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Length = 126 Back     alignment and structure
 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 100 RYKEGHAVRHW---KDTQHWYSLDLRTQQIWDYVGDNYVHRLNQSKADGKLVEMNSPCMS 156
             +E HA++H+   +   H   L L    +W YV DN V   + ++  G++V+      S
Sbjct: 68  NSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVCDNEVQYCSSNQ-LGQVVDYVRKQAS 126
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Length = 109 Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Length = 102 Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Length = 129 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
3c5k_A109 HD6, histone deacetylase 6; HDAC6, zinc finger, ac 99.48
2i50_A126 Ubiquitin carboxyl-terminal hydrolase 16; alpha/be 99.45
2uzg_A97 Ubiquitin carboxyl-terminal hydrolase 33; UBL conj 99.36
2g45_A129 Ubiquitin carboxyl-terminal hydrolase 5; zinc fing 99.31
2ida_A102 Hypothetical protein; zinc binding protein, struct 99.22
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 98.84
3mhs_A 476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 98.68
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.27
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.44
3bas_A89 Myosin heavy chain, striated muscle/general contro 92.17
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.02
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 92.02
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 92.0
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 90.93
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 90.39
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.97
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 88.95
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 88.81
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 88.01
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.78
2w83_C77 C-JUN-amino-terminal kinase-interacting protein 4; 85.78
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 82.04
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.02
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 81.97
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 81.5
1fxk_A107 Prefoldin; archaeal protein, chaperone; 2.30A {Met 81.37
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 81.27
1gs9_A165 Apolipoprotein E, APOE4; lipid transport, heparin- 81.23
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 81.08
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 80.32
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 80.13
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A Back     alignment and structure
Probab=99.48  E-value=1.4e-14  Score=120.36  Aligned_cols=63  Identities=25%  Similarity=0.373  Sum_probs=57.6

Q ss_pred             CCChhhhcccccccccceeeeeee-----ccchhHHHHhhhhcCCceeeeccccEEEEecCCceeeec
Q 019425           76 YLSSDEFVRFCGSHIDHVEELIFI-----RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVHRL  138 (341)
Q Consensus        76 ~~t~~dlc~fC~~~~e~w~cL~c~-----Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVhrl  138 (341)
                      .+.....|..|+...++|+||.||     ||.++||..||++|+|+++|+++|.+||||++|.||++.
T Consensus        20 ~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~V~~~   87 (109)
T 3c5k_A           20 GLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQ   87 (109)
T ss_dssp             CCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEEBCCG
T ss_pred             CCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCEEecc
Confidence            344567799999999999999874     999999999999999999999999999999999999874
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens} Back     alignment and structure
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A Back     alignment and structure
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d2uzga195 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hy 9e-10
d2idaa1102 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {R 2e-07
d2g45a1113 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal h 7e-05
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 100 RYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH 136
             +  H+  H ++T+H+ +++L T ++W Y     V 
Sbjct: 51  ESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVF 87
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 102 Back     information, alignment and structure
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d2uzga195 Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {H 99.32
d2g45a1113 Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Hum 99.26
d2idaa1102 Hypothetical protein RPA1320 {Rhodopseudomonas pal 99.21
d1gs9a_144 Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 83.21
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 83.08
>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase 33, UBP33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Zf-UBP
domain: Ubiquitin carboxyl-terminal hydrolase 33, UBP33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.8e-13  Score=106.57  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=50.7

Q ss_pred             hhcccccccc-cceeeee--e-----eccchhHHHHhhhhcCCceeeeccccEEEEecCCceee
Q 019425           81 EFVRFCGSHI-DHVEELI--F-----IRYKEGHAVRHWKDTQHWYSLDLRTQQIWDYVGDNYVH  136 (341)
Q Consensus        81 dlc~fC~~~~-e~w~cL~--c-----~Ry~~~Ha~~H~~et~H~~am~l~t~rVWdY~~D~yVh  136 (341)
                      ..|..|+... ++|+||.  |     |||..+||..||++++|+++|++.|.+||||.+|.||.
T Consensus        24 ~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~~~H~~~~~l~t~~vwCy~Cd~~v~   87 (95)
T d2uzga1          24 GTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVF   87 (95)
T ss_dssp             TCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEETTTTEEEC
T ss_pred             CeeecCCCCCCCEEEeccccCCcEEccCCcCcHHHHHHhhhCCCEEEECCCCeEEECCCCCEEE
Confidence            4688998875 5799993  5     59999999999999999999999999999999999994
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure