Citrus Sinensis ID: 019438

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-

MDTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLKDNYLYEEENWILTLFCPSMVTDV

ccccHHHHHHHHHHHHcccccccccEEEEcccccccccccccEEEEEEEEEcccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEEEEcHHHHHHHHHHHHcccEEEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHcccccccc

ccHHHHHHEEEEHEHHcHHHHcccccccccccccccccccccEEEEEEEEEcccccccEEEEEEcccccccccccccccccccEccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEEEEEccHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHccccccHHHHHHHHHHcccccc

MDTKRVINIFIFILVsspclasagdivhqdnnapkrpgcdnnfvlvkvptwvdggedteyvgvgarfgrtleakekdasqnrlvladppdccskpknkltgEAILVhrggcsftakanFAEEANASAILIINNKTELFKMVCesnetdvdiripaimlpqdagANLEKLIKNNSVVSvqlysprrpvvdVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKdgsdefsnmegvnsngfvdINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSfcicffptpilslkdnylyeeeNWILTLFCPSMVTDV

MDTKRVINIFIFILVSSPCLASAGDIVHQDNNapkrpgcdnNFVLVKVPtwvdggedteYVGVGARFGRtleakekdasqnrlvladppdccskpkNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLKDNYLYEEENWILTLFCPSMVTDV

****RVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTL*******************CC****NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDG**EFSNMEGVNSNGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLKDNYLYEEENWILTLFCPSM****

****RVI*IFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARE*****************************INMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLKDNYLYEEENWILTLFCPSMVTDV

*DTKRVINIFIFILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLK**************NGFVDINMASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLKDNYLYEEENWILTLFCPSMVTD*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo

oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		341	2.2.26 [Sep-21-2011]
Q0WMJ8		540	Signal peptide peptidase-	yes	no	0.847	0.535	0.706	1e-118
Q8W469		540	Signal peptide peptidase-	no	no	0.815	0.514	0.689	1e-111
Q5Z413		542	Signal peptide peptidase-	yes	no	0.850	0.535	0.627	1e-106
Q0DWA9		545	Signal peptide peptidase-	no	no	0.806	0.504	0.678	1e-101
Q53P98		534	Signal peptide peptidase-	no	no	0.771	0.492	0.445	7e-64
Q4V3B8		540	Signal peptide peptidase-	no	no	0.815	0.514	0.377	3e-50
Q9MA44		536	Signal peptide peptidase-	no	no	0.791	0.503	0.391	6e-47
Q5N808		523	Signal peptide peptidase-	no	no	0.785	0.512	0.368	1e-43
Q3TD49		578	Signal peptide peptidase-	yes	no	0.624	0.368	0.269	9e-14
Q8TCT7		592	Signal peptide peptidase-	yes	no	0.539	0.310	0.278	1e-13

>sp\|Q0WMJ8\|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1	Back alignment and function desciption

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/290 (70%), Positives = 239/290 (82%), Gaps = 1/290 (0%)

Query: 10  FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
           F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct: 12  FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query: 69  RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
            TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct: 72  PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query: 129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
           LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct: 132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query: 189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
           DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct: 192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query: 249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLS 298
            SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLS
Sbjct: 252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLS 301

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q8W469\|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q5Z413\|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q0DWA9\|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q53P98\|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q4V3B8\|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q9MA44\|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q5N808\|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q3TD49\|SPP2B_MOUSE Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2	Back alignment and function description

>sp\|Q8TCT7\|SPP2B_HUMAN Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		341
356568398		539	PREDICTED: signal peptide peptidase-like	0.835	0.528	0.770	1e-127
357514571		573	Signal peptide peptidase-like 2B [Medica	0.868	0.516	0.736	1e-126
356531995		539	PREDICTED: signal peptide peptidase-like	0.856	0.541	0.752	1e-126
356520402		541	PREDICTED: signal peptide peptidase-like	0.865	0.545	0.723	1e-125
16118854		538	growth-on protein GRO11 [Euphorbia esula	0.897	0.568	0.728	1e-125
255541612		538	Minor histocompatibility antigen H13, pu	0.873	0.553	0.738	1e-123
225454252		534	PREDICTED: signal peptide peptidase-like	0.873	0.558	0.744	1e-123
356506212		542	PREDICTED: signal peptide peptidase-like	0.873	0.549	0.707	1e-122
449441460		539	PREDICTED: signal peptide peptidase-like	0.826	0.523	0.750	1e-121
224064037		528	predicted protein [Populus trichocarpa]	0.847	0.547	0.734	1e-120

>gi\|356568398\|ref\|XP_003552398.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/288 (77%), Positives = 252/288 (87%), Gaps = 3/288 (1%)

Query: 20  LASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDAS 79
           L+ AGDIVH D+ AP+RPGCDNNFVLVKVPTW+DG E  EYVGVGARFG TLE+KEK A+
Sbjct: 21  LSLAGDIVHPDSIAPRRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHAN 80

Query: 80  QNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFK 139
             R+ +ADPPDCCSKPKNKLTGE ILVHRG CSFT KAN AEEA ASAILIIN +TELFK
Sbjct: 81  HTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINYRTELFK 140

Query: 140 MVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVVDVAEVFLWLMA 199
           MVCE+NETDVDI IPA+MLPQDAG NL+  I NNSVVSVQLYSP RP+VDVAEVFLWLMA
Sbjct: 141 MVCEANETDVDIGIPAVMLPQDAGENLKNHILNNSVVSVQLYSPLRPLVDVAEVFLWLMA 200

Query: 200 VGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIAS 259
           VGTILCASYWSAWTARE+AIE +KLLKD SDE+ N E   S+ +V+I+ A+A+SFVVIAS
Sbjct: 201 VGTILCASYWSAWTARESAIEQEKLLKDASDEYINAENAGSSAYVEISTAAAISFVVIAS 260

Query: 260 CFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLS---WYVYSS 304
           CFLVMLYKLM++WF+EVLVVLFCIGGVEGLQTC+VALLS   W+ +++
Sbjct: 261 CFLVMLYKLMAYWFVEVLVVLFCIGGVEGLQTCLVALLSCFKWFQHAA 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|357514571\|ref\|XP_003627574.1\| Signal peptide peptidase-like 2B [Medicago truncatula] gi\|355521596\|gb\|AET02050.1\| Signal peptide peptidase-like 2B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356531995\|ref\|XP_003534560.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|356520402\|ref\|XP_003528851.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|16118854\|gb\|AAL14628.1\|AF417575_1 growth-on protein GRO11 [Euphorbia esula]	Back alignment and taxonomy information

>gi\|255541612\|ref\|XP_002511870.1\| Minor histocompatibility antigen H13, putative [Ricinus communis] gi\|223549050\|gb\|EEF50539.1\| Minor histocompatibility antigen H13, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225454252\|ref\|XP_002274726.1\| PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera] gi\|297745304\|emb\|CBI40384.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356506212\|ref\|XP_003521881.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|449441460\|ref\|XP_004138500.1\| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus] gi\|449516199\|ref\|XP_004165135.1\| PREDICTED: signal peptide peptidase-like 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224064037\|ref\|XP_002301360.1\| predicted protein [Populus trichocarpa] gi\|222843086\|gb\|EEE80633.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		341
TAIR\|locus:2198155		540	SPPL4 "SIGNAL PEPTIDE PEPTIDAS	0.853	0.538	0.702	1.3e-109
TAIR\|locus:2026684		540	SPPL2 "SIGNAL PEPTIDE PEPTIDAS	0.876	0.553	0.655	1.2e-104
TAIR\|locus:2040971		540	SPPL3 "SIGNAL PEPTIDE PEPTIDAS	0.844	0.533	0.375	2e-49
TAIR\|locus:2198733		536	SPPL5 "SIGNAL PEPTIDE PEPTIDAS	0.791	0.503	0.391	1.8e-48
RGD\|1563001		523	Sppl2a "signal peptide peptida	0.618	0.403	0.284	3.3e-16
MGI\|MGI:1913802		523	Sppl2a "signal peptide peptida	0.554	0.361	0.282	3.2e-15
UNIPROTKB\|F1N8P5		498	SPPL2A "Uncharacterized protei	0.571	0.391	0.277	1.9e-14
UNIPROTKB\|F1MG08		511	SPPL2A "Uncharacterized protei	0.618	0.412	0.266	2e-14
UNIPROTKB\|F1NL58		514	SPPL2A "Uncharacterized protei	0.571	0.379	0.277	2.1e-14
UNIPROTKB\|Q8TCT8		520	SPPL2A "Signal peptide peptida	0.645	0.423	0.268	2.1e-14

TAIR\|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 205/292 (70%), Positives = 240/292 (82%)

Query:    10 FIF-ILVSSPCLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFG 68
             F+F +L+ S     AGDIVH D++ P+RPGC+NNFVLVKVPT V+G E TEYVGVGARFG
Sbjct:    12 FVFGLLLYSASFVCAGDIVHHDDSLPQRPGCNNNFVLVKVPTRVNGSEYTEYVGVGARFG 71

Query:    69 RTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGEAILVHRGGCSFTAKANFAEEANASAI 128
              TLE+KEK A+  +L +ADPPDCCS PKNKLTGE ILVHRG CSFT K   AE A ASAI
Sbjct:    72 PTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAI 131

Query:   129 LIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSPRRPVV 188
             LIINN T+LFKMVCE  E  +DI IP +MLP DAG +LE ++K+N++V++QLYSP+RP V
Sbjct:   132 LIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAV 191

Query:   189 DVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINM 248
             DVAEVFLWLMAVGTILCASYWSAWT RE AIE DKLLKDGSDE   +   +S G V++ +
Sbjct:   192 DVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTV 251

Query:   249 ASAVSFVVIASCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWY 300
              SA+ FVV+ASCFL+MLYKLMSFWFIEVLVVLFCIGGVEGLQTC+V+LLS +
Sbjct:   252 ISAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCF 303

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR\|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1563001 Sppl2a "signal peptide peptidase-like 2A" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1913802 Sppl2a "signal peptide peptidase like 2A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8P5 SPPL2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MG08 SPPL2A "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NL58 SPPL2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TCT8 SPPL2A "Signal peptide peptidase-like 2A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WMJ8	SIPL4_ARATH	3, ., 4, ., 2, 3, ., -	0.7068	0.8475	0.5351	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		341
cd02132		139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	4e-61
cd04818		118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	9e-14
cd00538		126	cd00538, PA, PA: Protease-associated (PA) domain	2e-13
cd02126		126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	6e-12
cd02127		118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	8e-12
pfam02225		96	pfam02225, PA, PA domain	2e-11
cd02122		138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	3e-09
cd02125		127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	5e-09
cd02123		153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	3e-08
pfam04258		291	pfam04258, Peptidase_A22B, Signal peptide peptidas	2e-07
smart00730		249	smart00730, PSN, Presenilin, signal peptide peptid	5e-07
cd04813		117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	2e-06
cd02133		143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	3e-06
cd02124		129	cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso	5e-05
cd04816		122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	6e-05
cd02129		120	cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as	3e-04

>gnl\|CDD\|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

 Score =  191 bits (488), Expect = 4e-61
 Identities = 74/138 (53%), Positives = 93/138 (67%)

Query: 43  FVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNKLTGE 102
           F LVKV  WVDG E  E VGV ARFG +L +KE +A++ R VLA+P DCCS   +KL+G 
Sbjct: 2   FQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGS 61

Query: 103 AILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDA 162
             LV RG C+FT KA  AE   ASA+LIIN++ EL+KMVCE N+T ++I IP +M+PQ A
Sbjct: 62  IALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSA 121

Query: 163 GANLEKLIKNNSVVSVQL 180
           G  L K +     V V L
Sbjct: 122 GDALNKSLDQGKKVEVLL 139

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 139

>gnl\|CDD\|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>gnl\|CDD\|238300 cd00538, PA, PA: Protease-associated (PA) domain	Back alignment and domain information

>gnl\|CDD\|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>gnl\|CDD\|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>gnl\|CDD\|216938 pfam02225, PA, PA domain	Back alignment and domain information

>gnl\|CDD\|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>gnl\|CDD\|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>gnl\|CDD\|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>gnl\|CDD\|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase	Back alignment and domain information

>gnl\|CDD\|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family	Back alignment and domain information

>gnl\|CDD\|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>gnl\|CDD\|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>gnl\|CDD\|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>gnl\|CDD\|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>gnl\|CDD\|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		341
KOG2442		541	consensus Uncharacterized conserved protein, conta	100.0
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	99.97
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.94
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.9
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.88
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.88
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.88
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.87
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.83
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.83
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.8
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.77
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.72
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.72
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.64
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.57
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	99.57
KOG3920		193	consensus Uncharacterized conserved protein, conta	99.56
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.45
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.44
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.33
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.24
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.89
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.37
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.37
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.33
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	98.26
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	97.88
PF04258		298	Peptidase_A22B: Signal peptide peptidase; InterPro	97.59
smart00730		249	PSN Presenilin, signal peptide peptidase, family.	96.79
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	95.85
KOG2443		362	consensus Uncharacterized conserved protein [Funct	95.37
COG4882		486	Predicted aminopeptidase, Iap family [General func	90.08

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.7e-73  Score=556.95  Aligned_cols=301  Identities=46%  Similarity=0.780  Sum_probs=284.8

Q ss_pred             ccccCCCCCccCCCCCCCCCCCCCeEEEEeeeeecCCcceeEEeeeccCCCccccccCCceeEEEEecCCCCCCCCCCCC
Q 019438           19 CLASAGDIVHQDNNAPKRPGCDNNFVLVKVPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKNK   98 (341)
Q Consensus        19 ~~~~~~d~~~~d~~~~~~p~c~~~f~lv~v~~w~~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~~aC~~~~~~   98 (341)
                      ....++|..|+++..|+.|||+|+||+||+++|+++.+..++.++.++||..++...+++...++..++|.|.|+++.++
T Consensus        14 ~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k   93 (541)
T KOG2442|consen   14 SFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK   93 (541)
T ss_pred             heEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc
Confidence            66788999999999999999999999999999999999999999999999999998888888888899999999999999


Q ss_pred             CCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEE
Q 019438           99 LTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV  178 (341)
Q Consensus        99 l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V  178 (341)
                      ++|++++|.||||+|++|+++||++||+|++|+||.+++..|+|.+.++..+++||++||++++|+++.+....+++|++
T Consensus        94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~  173 (541)
T KOG2442|consen   94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL  173 (541)
T ss_pred             ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence            99999999999999999999999999999999999999999999988888999999999999999999999999999999


Q ss_pred             EEecCCCCCccceeehhHHHHHHHhhheeeeccchhhhhHHHHHhhhcCCCCCcccccCCCCCCcEEeecceehhhHHHH
Q 019438          179 QLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWTARETAIELDKLLKDGSDEFSNMEGVNSNGFVDINMASAVSFVVIA  258 (341)
Q Consensus       179 ~l~sp~~p~~D~s~v~i~lmAv~Tv~~~~~WS~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~e~v~~t~~~a~~FVv~~  258 (341)
                      ++|+|++|.+|+++++||+|||+||++|||||++++|+++.|+++.++++.++..++++++++|.+|++|.++++||++|
T Consensus       174 ~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fvv~~  253 (541)
T KOG2442|consen  174 ALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFVVTA  253 (541)
T ss_pred             EEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEehhhh
Confidence            99999999999999999999999999999999999999998888888766555556678889999999999999999999


Q ss_pred             HHHHHHHHhhhcceehhhhhhhhhhcchhhhHHhHHHHHHhhccCCccccccCCcccccc-cccceec
Q 019438          259 SCFLVMLYKLMSFWFIEVLVVLFCIGGVEGLQTCVVALLSWYVYSSFCICFFPTPILSLK-DNYLYEE  325 (341)
Q Consensus       259 s~~LllLyff~~~~~v~vii~iFci~~~~gL~~Cl~~l~~r~~~~~f~~~r~~~~~~~~~-~~~~~~~  325 (341)
                      |+||+|||||| +||||++|+||||||++|||+||.||++|+   +++.||  .|.|..+ .+++|.+
T Consensus       254 c~~LvLlyfF~-~~~V~v~iiif~i~g~~gLy~Cl~~lv~r~---~~~~~~--~~~~~~~l~~~~~~~  315 (541)
T KOG2442|consen  254 CGFLVLLYFFY-SYLVYVLIIIFCIGGAQGLYNCLAALVHRL---PYGAAR--FPTLAPRLGNMSYRL  315 (541)
T ss_pred             HHHHHHHHHHH-HHHHHHHhhheeecccchHHHHHHHHHhhh---hhhccc--ccccccccCChhHHH
Confidence            99999999999 889999999999999999999999999999   899999  8888888 8888854

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00730 PSN Presenilin, signal peptide peptidase, family	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		341
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	4e-14
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	7e-08

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194	Back alignment and structure

 Score = 69.1 bits (168), Expect = 4e-14
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 13/151 (8%)

Query: 48  VPTWVDGGEDTEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPKN---------- 97
                        +     +G+    +               + C+   N          
Sbjct: 42  RVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGST 101

Query: 98  KLTGEAILVHRGG-CSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156
                  L+ RGG C+F  K + A E  AS  +I N      +++  S+     + I AI
Sbjct: 102 VQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAI 159

Query: 157 MLPQDAGANLEKLIKNNSVVSVQLYSPRRPV 187
           M+    G  + + I+    V++ +   ++  
Sbjct: 160 MIGNLKGTKILQSIQRGIQVTMVIEVGKKHG 190

PyMOL of 3icu

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		341
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.9
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	99.09
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	99.01
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	98.62
3kas_A		640	Transferrin receptor protein 1; transferrin recept	98.47
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	98.45
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	98.34
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	98.19
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	92.37

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

Probab=99.90  E-value=1.5e-22  Score=182.17  Aligned_cols=136  Identities=24%  Similarity=0.349  Sum_probs=107.6

Q ss_pred             EEEEeeeeec--C--CcceeEEeeeccCCCccccccCCceeEEEEecC---CCCCCCCCCC---C-------CCCcEEEE
Q 019438           44 VLVKVPTWVD--G--GEDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILV  106 (341)
Q Consensus        44 ~lv~v~~w~~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~~aC~~~~~---~-------l~g~IaLV  106 (341)
                      ..|.+ +|.|  +  +....+.+++|+||..+|..   +..+.|+.+.   +.+||++.+.   +       .+||||||
T Consensus        35 A~vn~-sy~d~~~~~n~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV  110 (194)
T 3icu_A           35 AYLNV-SWRVPHTGVNRTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALI  110 (194)
T ss_dssp             EEEEE-EEECCSSCTTCEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEE
T ss_pred             EEEEE-EEECCCCCccceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEE
Confidence            44444 5554  3  55667899999999999875   4667777663   7899998762   1       36899999


Q ss_pred             ecCC-CCHHHHHHHHHHcCCcEEEEEeCC-C--CceeeccCCCCCCCCccceEEEechhhHHHHHHHHHCCCEEEEEEe-
Q 019438          107 HRGG-CSFTAKANFAEEANASAILIINNK-T--ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLY-  181 (341)
Q Consensus       107 ~RG~-CsF~~Ka~nAq~aGA~avLI~n~~-~--~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~V~V~l~-  181 (341)
                      +||+ |+|.+|++|||++||+|+||||+. +  .+..|...     ...+||+++|++++|+.|+++|++|.+|+++|. 
T Consensus       111 ~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~v  185 (194)
T 3icu_A          111 QRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEV  185 (194)
T ss_dssp             ESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEEC
Confidence            9999 999999999999999999999984 2  34566532     134799999999999999999999999998886 


Q ss_pred             -cCCCCCc
Q 019438          182 -SPRRPVV  188 (341)
Q Consensus       182 -sp~~p~~  188 (341)
                       +.+.||+
T Consensus       186 g~~h~pw~  193 (194)
T 3icu_A          186 GKKHGPWV  193 (194)
T ss_dssp             EEEECCCC
T ss_pred             CCccCCCC
Confidence             3445554

PyMOL of 3icu

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		341
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	98.69
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.4

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-08  Score=89.46  Aligned_cols=91  Identities=22%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             ceeEEEEecCCCCCCCC-----CCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc------------eee
Q 019438           78 ASQNRLVLADPPDCCSK-----PKNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL------------FKM  140 (341)
Q Consensus        78 ~~~~~Lv~~~p~~aC~~-----~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avLI~n~~~~l------------~~m  140 (341)
                      ..+++|+.++-   |..     +..+++|||+|++||+|+|.+|+++||++||+|+|||++..+.            ..+
T Consensus        38 ~v~g~lVy~n~---G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~  114 (193)
T d1de4c2          38 TVTGKLVHANF---GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHL  114 (193)
T ss_dssp             EEEECEEECST---TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCS
T ss_pred             ceeEEEEEccC---CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCccccccccccc
Confidence            35678887642   222     1247899999999999999999999999999999999874210            011


Q ss_pred             ccCC----------------CCCCCCccceEEEechhhHHHHHHHHH
Q 019438          141 VCES----------------NETDVDIRIPAIMLPQDAGANLEKLIK  171 (341)
Q Consensus       141 ~~~~----------------~~~~~~i~IPvv~Is~~~G~~L~~~l~  171 (341)
                      ..++                .+...-.+||+.-|++++++.|++.|.
T Consensus       115 ~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         115 GTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            0000                001122479999999999999998873

PyMOL of d1de4c2

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure