Citrus Sinensis ID: 019461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MAEVGECSASKPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFLRTK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccccccccEEEEcccEEEEccccccccccEEEEEEEEccccccEEEEEcccccEEEccEEEccccEEEcccccccccccccccccccccccccccccHHHHHHHcccccEEEccccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHEcccccccccEEEccccEEEEEcEcccccccEEEEEEEEccccccEEEEEccccEEEEccEEEccccEEEEccccEEcccccccccEEEEEEEEccccccccccEEcccHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHccccccccccccccccccccccccccccccEccccccEEEEEcccccccccccccccccEEccccccEEEEcccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
maevgecsaskpsreiwaklepsdsrfadvdissnEVVICSeitssssdkhewckitrnsdlhsakmqnkssnailvddtmvqneevvdikcgteiipgpdrevyLNFRFKVvpvqessnqqleisIDIEHAKCCIClniwhdvvtvapclhnfcngcfseWLRRSqekrstvlcphcrAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVirngkkhrrkrahspideesdsielpcpqcgteingfhcnqttvhlqcqgcggmmpsrndsvpqhclgcdrafCGAYWHAQMvarsdsqpmcshetfkpisertslgfhflrtk
Flexible Loop (DISEMBL)
maevgecsaskpsreiwaklepsdsrfadvdissNEVVICSeitssssdkhewCKITRnsdlhsakmqNKSSNAILVDDTMVQNEEVVdikcgteiipgpdREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSyayiksnlvirngkkhrrkrahspideesdsielPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETfkpisertslgfhflrtk
Low Complexity Region (SEG)
MAEVGECSASKPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFLRTK
Disordered region (IsUnstruct)
*****************************VDISSNEVVICSEI*********WCKI*****************AILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLR**DEEVALLDSYAYIKSNLVIR**********************LPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVA******************************
Disordered Region (DISOPRED)
************************S******ISSNEVV*****************IT*************************************************************************HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQS********************YAYIKSNL**************************PCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHET**PI*ERTSLGFHFLR**
Disordered Region (DISEMBL)
************SREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRN*******************IELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFLRTK
Disordered Region (DISPRO)
************SREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGK*****************IELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFLRT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEVGECSASKPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFLRTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q810L3	664	E3 ubiquitin-protein liga	yes	no	0.497	0.254	0.265	6e-15
Q96EP1	664	E3 ubiquitin-protein liga	no	no	0.482	0.246	0.260	1e-14
Q5RF77	571	E3 ubiquitin-protein liga	yes	no	0.497	0.295	0.267	1e-14
A5WW08	637	E3 ubiquitin-protein liga	yes	no	0.476	0.254	0.25	3e-13
Q5FWP4	625	E3 ubiquitin-protein liga	N/A	no	0.497	0.270	0.263	7e-13
Q6P256	626	E3 ubiquitin-protein liga	yes	no	0.497	0.269	0.263	8e-13
P29836	676	E3 ubiquitin-protein liga	no	no	0.141	0.071	0.444	5e-05
P29128	676	E3 ubiquitin-protein liga	no	no	0.141	0.071	0.444	5e-05
Q14258	630	E3 ubiquitin/ISG15 ligase	no	no	0.197	0.106	0.407	8e-05
Q2YDF9	259	Polycomb group RING finge	no	no	0.247	0.324	0.282	0.0002

>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 89/230 (38%), Gaps = 61/230 (26%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct: 299 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 352

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
            L+N+ ++ L  H    RS+E+V  +D+   I  +++   +R         +      S 
Sbjct: 353 ILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 412

Query: 242 IDEESDSIE-------------------LPCPQCGTEING-------------------- 262
           +D ES  I                    LPCP   +E+                      
Sbjct: 413 VDSESSDISQPYIVCRQCPEYRRQAVQSLPCPVPESELGATLALGGEAPSTSASLPTAAP 472

Query: 263 -FHCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
            + C     H  C  C   MP R           PQ C  C + FC  YW
Sbjct: 473 DYMCPLQGSHAICTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYW 522

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 88/234 (37%), Gaps = 70/234 (29%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct: 300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 353

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNL------------------------ 225
            L+N+ ++ L  H    RS+E+V  +D+   I  ++                        
Sbjct: 354 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 413

Query: 226 -------------VIRNGKKHRRKRAHSP---------------IDEESDSIELPCPQCG 257
                        V R   ++RR+ A  P                D  S S+ L      
Sbjct: 414 VDSESSDISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSL-----T 468

Query: 258 TEINGFHCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
           T +  + C     H  C  C   MP R           PQ C  C + FC  YW
Sbjct: 469 TAVQDYVCPLQGSHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYW 522

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 59/228 (25%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct: 208 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 261

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
            L+N+ ++ L  H    RS+E+V  +D+   I  +++   +R         +      S 
Sbjct: 262 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 321

Query: 242 IDEESDSIELP---CPQCG-----------------------------------TEINGF 263
           +D ES  I  P   C QC                                    T +  +
Sbjct: 322 VDSESSDISQPYVVCRQCPEYRRQAAQPPPCPAPEGEPGVPQALVDAPSTSVSLTTVQDY 381

Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
            C     H  C  C   MP R           PQ C  C + FC  YW
Sbjct: 382 VCPLQGSHALCTCCFQPMPDRRAEREQNPRVAPQQCAVCLQPFCHLYW 429

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 74/236 (31%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC ++ +D ++V PC+H FC  C+S W+ RS        CP CR  V+ + +NH
Sbjct: 273 ESLTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSS------FCPTCRCPVERIRKNH 326

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSI 249
            L+N+ ++ L  H    R+++++  +D+      N + ++  + + +R+ S  DEE+ S 
Sbjct: 327 ILNNLVEAYLLQHPEKCRTEDDLRSMDA-----RNKITQDMLQPKVERSFS--DEEASSD 379

Query: 250 EL---------------------PCPQCGTEING-------------------------- 262
            L                      CP    E++                           
Sbjct: 380 YLFELSDNDSDISDMSQPYMMCRQCPGYRKELSSALWICESAQSESLAKTAGDGPSTSSD 439

Query: 263 --------FHCNQTTVHLQCQGCGGMMPSRN------DSVPQHCLGCDRAFCGAYW 304
                   F C     HL C  C   MP R          PQHCL C + FC  YW
Sbjct: 440 STTAAPQEFRCPPQASHLICTCCLQPMPDRRFEHLPPQVSPQHCLVCQKPFCHVYW 495

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 59/228 (25%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct: 262 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 315

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
            L+N+ ++ L  H    RS+E+   +D+   I  +++   +R         +      S 
Sbjct: 316 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 375

Query: 242 IDEESDSIELP---CPQC-----------------------------------GTEINGF 263
           +D ES  I  P   C QC                                    T    +
Sbjct: 376 VDSESSDISQPYTVCRQCPGFVRHSMQPPPYPPPSDTETSRTQGDAPSTSTNFPTATQEY 435

Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
            C     H+ C  C   MP R           PQ C  C   FC  YW
Sbjct: 436 VCPSHGSHVICTCCFQPMPDRRAEREHNSHVAPQQCTICLEPFCHMYW 483

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 59/228 (25%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct: 263 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 316

Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
            L+N+ ++ L  H    RS+E+   +D+   I  +++   +R         +      S 
Sbjct: 317 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 376

Query: 242 IDEESDSIELP---CPQC-----------------------------------GTEINGF 263
           +D ES  I  P   C QC                                    T    +
Sbjct: 377 VDSESSDISQPYTVCRQCPGYVRHNIQPPPYPPPSDTEASRTQGDAPSTSTNFPTATQEY 436

Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
            C     H+ C  C   MP R           PQ C  C   FC  YW
Sbjct: 437 VCPSHGSHVICTCCFQPMPDRRAEREHNSHVAPQQCTICLEPFCHMYW 484

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain K22) GN=BICP0 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           E   CCICL+         PCLH FC  C   WL    E R T  CP C+A VQ
Sbjct: 9   ELGSCCICLDAITGAARALPCLHAFCLACIRRWL----EGRPT--CPLCKAPVQ 56

RING-finger E3 ubiquitin ligase that degrades host SP100, one of the major components of ND10 nuclear bodies, thereby disrupting the organization of these bodies. Acts as a transcriptional activator of viral promoters and enhances infectivity. Additionally, inhibits host IRF3 activation to prevent interferon production by the infected cells.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain Jura) GN=BICP0 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           E   CCICL+         PCLH FC  C   WL    E R T  CP C+A VQ
Sbjct: 9   ELGSCCICLDAITGAARALPCLHAFCLACIRRWL----EGRPT--CPLCKAPVQ 56

RING-finger E3 ubiquitin ligase that degrades host SP100, one of the major components of ND10 nuclear bodies, thereby disrupting the organization of these bodies. Acts as a transcriptional activator of viral promoters and enhances infectivity. Additionally, inhibits host IRF3 activation to prevent interferon production by the infected cells.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVVQF---V 185
           E   C ICL  + + VT  PC HNFC  C +E W  +     S  LCP CRAV Q    +
Sbjct: 9   EELSCSICLEPFKEPVTT-PCGHNFCGSCLNETWAVQG----SPYLCPQCRAVYQARPQL 63

Query: 186 GRNHYLHNIEQSILQA 201
            +N  L N+ +  LQA
Sbjct: 64  HKNTVLCNVVEQFLQA 79

Functions as an ubiquitin E3 ligase and as an ISG15 E3 ligase. Involved in innate immune defense against viruses by mediating ubiquitination of DDX58. Mediates 'Lys-63'-linked polyubiquitination of the DDX58 N-terminal CARD-like region which is crucial for triggering the cytosolic signal transduction that leads to the production of interferons in response to viral infection. Promotes ISGylation of 14-3-3 sigma (SFN), an adapter protein implicated in the regulation of a large spectrum signaling pathway. Mediates estrogen action in various target organs.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: n

EC: 3

>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
           +K+ P++     +++I    EH  CC+C   + D  T+  CLH FC  C  ++L+ S+  
Sbjct: 23  YKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK-- 80

Query: 170 RSTVLCPHCRAVVQFVG--RNHYLHNIEQSIL 199
                CP C   +       NH L  + Q I+
Sbjct: 81  ----YCPMCNIKIHETQPLLNHKLDRVMQDIV 108

Component of the Polycomb group (PcG) multiprotein BCOR complex, a complex required to maintain the transcriptionally repressive state of some genes, such as BCL6 and the cyclin-dependent kinase inhibitor, CDKN1A. Transcriptional repressor that may be targeted to the DNA by BCL6; this transcription repressor activity may be related to PKC signaling pathway. Represses CDKN1A expression by binding to its promoter, and this repression is dependent on the retinoic acid response element (RARE element). Promotes cell cycle progression and enhances cell proliferation as well. May have a positive role in tumor cell growth by down-regulating CDKN1A. Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224122662	465	predicted protein [Populus trichocarpa]	0.982	0.718	0.697	1e-134
296084808	1150	unnamed protein product [Vitis vinifera]	0.964	0.285	0.675	1e-127
225463230	462	PREDICTED: E3 ubiquitin-protein ligase C	0.964	0.709	0.675	1e-125
363814404	466	uncharacterized protein LOC100805618 [Gl	0.967	0.706	0.592	1e-112
449457329	435	PREDICTED: E3 ubiquitin-protein ligase C	0.891	0.696	0.653	1e-111
357520273	471	E3 ubiquitin-protein ligase CHFR [Medica	0.961	0.694	0.604	1e-110
5668816	473	F16N3.15 [Arabidopsis thaliana]	0.985	0.708	0.565	1e-107
42562591	466	RING/U-box domain-containing protein [Ar	0.985	0.718	0.565	1e-107
110737448	466	hypothetical protein [Arabidopsis thalia	0.985	0.718	0.562	1e-106
297846980	469	zinc finger family protein [Arabidopsis	0.985	0.714	0.546	1e-105

>gi|224122662|ref|XP_002330437.1| predicted protein [Populus trichocarpa] gi|222871849|gb|EEF08980.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/341 (69%), Positives = 278/341 (81%), Gaps = 7/341 (2%)

Query: 3   EVGECSASKPSR---EIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRN 59
           E GECS+   S    E WAKL PSDSR++DV+I SNE+VICSEITS+S +KHEWCKITRN
Sbjct: 2   EFGECSSGSNSSSSNEAWAKLVPSDSRYSDVEIRSNEMVICSEITSTSLEKHEWCKITRN 61

Query: 60  SDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESS 119
           SD  SA MQNKS N ILVD+  VQNE+ V I CG+EIIPGP RE YL++RFK++P +ES 
Sbjct: 62  SDQSSAMMQNKSLNTILVDEATVQNEDDVVINCGSEIIPGPAREGYLSYRFKLMP-RESF 120

Query: 120 NQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179
            + L++SID EHAKC ICLN+WHDVVTVAPCLHNFCNGCFSEWLRRSQE+ ++VLCP CR
Sbjct: 121 TRWLKVSIDAEHAKCSICLNVWHDVVTVAPCLHNFCNGCFSEWLRRSQERHASVLCPQCR 180

Query: 180 AVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAH 239
           AVVQFVGRNH+LH+IE+ +LQA SSL++SDEE+ LLDSYA IKSNL+I+ GKKHRRKR H
Sbjct: 181 AVVQFVGRNHFLHSIEEDVLQADSSLKQSDEEIILLDSYASIKSNLIIQTGKKHRRKRPH 240

Query: 240 SPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRND-SVPQH--CLGCD 296
           S +D E++  + PCPQCGTE +GFHCNQ T+HLQCQ CGGMMPSR D  VPQH  CLGCD
Sbjct: 241 SILDAENEVADFPCPQCGTEYSGFHCNQNTIHLQCQACGGMMPSRADIGVPQHCMCLGCD 300

Query: 297 RAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
           R FCGAYWHAQ V+RSD+  +CSHE FKPISE       FL
Sbjct: 301 RVFCGAYWHAQGVSRSDTHSICSHENFKPISEHAVSRIPFL 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084808|emb|CBI27690.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/330 (67%), Positives = 266/330 (80%), Gaps = 2/330 (0%)

Query: 3    EVGECSASKPSREI-WAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSD 61
            E GE SA+ PS+EI WAKL PSDSR+++V++  +E+VICS++   S DK EWCK+TRNSD
Sbjct: 690  EFGESSAANPSQEIVWAKLVPSDSRYSEVELRLDEMVICSDVMFPSFDKQEWCKVTRNSD 749

Query: 62   LHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQ 121
              SA +QNKSSN ILVD+  + +E+ + IKCG+EIIPGP  E YL++RF+V+  QES  +
Sbjct: 750  QCSATIQNKSSNTILVDEVAIPSEDSIVIKCGSEIIPGPKNEGYLSYRFEVMSPQESIKE 809

Query: 122  QLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181
            QL+I +D+EHAKC ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQ K S VLCP CRA+
Sbjct: 810  QLKICLDVEHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQNKHSNVLCPQCRAI 869

Query: 182  VQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSP 241
            VQFVGRNH+L  IE++ILQA  SLRRSDEEVA+L+S+A I+SNLV++ G K  RKRAHS 
Sbjct: 870  VQFVGRNHFLRTIEETILQADPSLRRSDEEVAVLESHASIQSNLVLKTGTKLGRKRAHSS 929

Query: 242  IDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRND-SVPQHCLGCDRAFC 300
            ++EES+ +E PCPQCG E  GF CN  TVHLQC  CGGMMPSRND  VPQHCLGCDRAFC
Sbjct: 930  LNEESEELEFPCPQCGAEYAGFLCNPNTVHLQCHACGGMMPSRNDIGVPQHCLGCDRAFC 989

Query: 301  GAYWHAQMVARSDSQPMCSHETFKPISERT 330
            GAYWH Q    SDS P+C HETFKPIS+ T
Sbjct: 990  GAYWHTQRFGGSDSHPVCCHETFKPISDHT 1019

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463230|ref|XP_002268418.1| PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/330 (67%), Positives = 266/330 (80%), Gaps = 2/330 (0%)

Query: 3   EVGECSASKPSREI-WAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSD 61
           E GE SA+ PS+EI WAKL PSDSR+++V++  +E+VICS++   S DK EWCK+TRNSD
Sbjct: 2   EFGESSAANPSQEIVWAKLVPSDSRYSEVELRLDEMVICSDVMFPSFDKQEWCKVTRNSD 61

Query: 62  LHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQ 121
             SA +QNKSSN ILVD+  + +E+ + IKCG+EIIPGP  E YL++RF+V+  QES  +
Sbjct: 62  QCSATIQNKSSNTILVDEVAIPSEDSIVIKCGSEIIPGPKNEGYLSYRFEVMSPQESIKE 121

Query: 122 QLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181
           QL+I +D+EHAKC ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQ K S VLCP CRA+
Sbjct: 122 QLKICLDVEHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQNKHSNVLCPQCRAI 181

Query: 182 VQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSP 241
           VQFVGRNH+L  IE++ILQA  SLRRSDEEVA+L+S+A I+SNLV++ G K  RKRAHS 
Sbjct: 182 VQFVGRNHFLRTIEETILQADPSLRRSDEEVAVLESHASIQSNLVLKTGTKLGRKRAHSS 241

Query: 242 IDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRND-SVPQHCLGCDRAFC 300
           ++EES+ +E PCPQCG E  GF CN  TVHLQC  CGGMMPSRND  VPQHCLGCDRAFC
Sbjct: 242 LNEESEELEFPCPQCGAEYAGFLCNPNTVHLQCHACGGMMPSRNDIGVPQHCLGCDRAFC 301

Query: 301 GAYWHAQMVARSDSQPMCSHETFKPISERT 330
           GAYWH Q    SDS P+C HETFKPIS+ T
Sbjct: 302 GAYWHTQRFGGSDSHPVCCHETFKPISDHT 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814404|ref|NP_001242840.1| uncharacterized protein LOC100805618 [Glycine max] gi|255645319|gb|ACU23156.1| unknown [Glycine max]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/336 (59%), Positives = 255/336 (75%), Gaps = 7/336 (2%)

Query: 1   MAEVGECSAS-----KPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCK 55
           M E GECSAS      PS EIWAKL  SD R++DV ISS+E VI SEI+++S+DKH WCK
Sbjct: 1   MEERGECSASASASANPSDEIWAKLVLSDERYSDVQISSDEKVISSEISATSNDKHSWCK 60

Query: 56  ITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPV 115
           I RN DL SA M+NKS N ILVD   V +++ + IK G++IIPGPDRE +++++F ++  
Sbjct: 61  IVRNPDLCSATMENKSQNTILVDGVKVHSDDTIVIKDGSQIIPGPDREGFVSYKFHIMSG 120

Query: 116 QESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLC 175
            +   +QL+I +D+ HAKC ICLN+WHDVVTVAPCLHNFCNGCFSEWLRRS+E+ S VLC
Sbjct: 121 PDICQRQLKICVDVNHAKCSICLNLWHDVVTVAPCLHNFCNGCFSEWLRRSKERHSAVLC 180

Query: 176 PHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRR 235
           P CRAVV F G+NH+L  I + +L+A SSL+RS +EVALLD+YA ++SNLVI +GKK+ R
Sbjct: 181 PQCRAVVHFAGKNHFLRTIAEDMLRADSSLQRSHDEVALLDTYALVRSNLVIGSGKKN-R 239

Query: 236 KRAHSPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRND-SVPQHCLG 294
           KRA++P+D++SD     C QC TE+ GF C   TVHLQCQ CGGMMPSR    +PQ+C G
Sbjct: 240 KRAYTPLDDQSDGTYHQCQQCVTEVAGFRCKYDTVHLQCQACGGMMPSRTGFGIPQYCSG 299

Query: 295 CDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERT 330
           CDR+FCGAYWHA  V  + S P+CS +T +PIS+ +
Sbjct: 300 CDRSFCGAYWHALGVTGNGSYPVCSQDTLRPISDHS 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457329|ref|XP_004146401.1| PREDICTED: E3 ubiquitin-protein ligase CHFR-like [Cucumis sativus]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/306 (65%), Positives = 241/306 (78%), Gaps = 3/306 (0%)

Query: 27  FADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEE 86
           +AD++I+S+E VI SE  S+S +KHEWCKITRNSDL++A +QN+SSNAI+VD+T+VQ +E
Sbjct: 2   YADIEINSDETVIFSETKSTSVEKHEWCKITRNSDLNTATLQNRSSNAIIVDETLVQKDE 61

Query: 87  VVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVT 146
              IKCG+EI+ GP R+  L+F+F+++   +   + L+IS+D+EHAKC ICLNIWHDVVT
Sbjct: 62  TTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLC-KGLKISVDVEHAKCSICLNIWHDVVT 120

Query: 147 VAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLR 206
            APC HNFCNGCFSEWL+RSQEK + VLCP CRAVVQFVGRNHYL NI + ILQA SSLR
Sbjct: 121 AAPCFHNFCNGCFSEWLKRSQEKHTNVLCPQCRAVVQFVGRNHYLLNIAEDILQADSSLR 180

Query: 207 RSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPID-EESDSIELPCPQCGTEINGFHC 265
           RS EE+A LDS + I+SNLVI + KK  +KR H  +  EES  +ELPCPQCGTE  GF C
Sbjct: 181 RSVEEIATLDSCSLIQSNLVIGSVKKRNQKRPHFLLGLEESGGLELPCPQCGTEYAGFRC 240

Query: 266 NQTTVHLQCQGCGGMMPSRNDS-VPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFK 324
           N   VHLQC  CGGMMPSR D+ +PQHCLGCDRAFCGAYW AQ + RSD    CS ETFK
Sbjct: 241 NPHMVHLQCHECGGMMPSRFDTGIPQHCLGCDRAFCGAYWEAQSLQRSDIYATCSPETFK 300

Query: 325 PISERT 330
           PIS RT
Sbjct: 301 PISRRT 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520273|ref|XP_003630425.1| E3 ubiquitin-protein ligase CHFR [Medicago truncatula] gi|355524447|gb|AET04901.1| E3 ubiquitin-protein ligase CHFR [Medicago truncatula]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/329 (60%), Positives = 248/329 (75%), Gaps = 2/329 (0%)

Query: 11  KPSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNSDLHSAKMQNK 70
           KPS EIWAKL  SDSR+ DV+I S++  I SEI+++S DKH WCKI RNSDL SA ++NK
Sbjct: 19  KPSDEIWAKLVQSDSRYPDVEIRSDKGQIRSEISTASCDKHRWCKIVRNSDLCSATLKNK 78

Query: 71  SSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIE 130
           SSN ILVD   V   + V IK  +EIIPGP +E +++++F++V   E     L+I +D++
Sbjct: 79  SSNTILVDGAEVGKGDTVVIKDRSEIIPGPAKEGFVSYKFQIVSSPEICQTLLKICVDVD 138

Query: 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHY 190
           HAKC ICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP CRAVVQFVG+NH+
Sbjct: 139 HAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPQCRAVVQFVGKNHF 198

Query: 191 LHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHR-RKRAHSPIDEESDSI 249
           L  I + +++A SSLRRS +EVALLD+YA ++SNLVI +GKK R R+RA++ +  +SD  
Sbjct: 199 LRTIAEDMVKADSSLRRSHDEVALLDTYASVRSNLVIGSGKKSRKRERANTTMVNQSDGP 258

Query: 250 ELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRND-SVPQHCLGCDRAFCGAYWHAQM 308
           +  C QC T + GF C+ +T+HLQCQ CGGMMPSR    VPQ+CLGCDR FCGAYW A  
Sbjct: 259 DHHCSQCVTVVGGFQCDPSTIHLQCQECGGMMPSRTGLGVPQYCLGCDRPFCGAYWSALG 318

Query: 309 VARSDSQPMCSHETFKPISERTSLGFHFL 337
           V  S S P+CS +T +PISE T  G   +
Sbjct: 319 VTGSGSYPVCSPDTLRPISEHTISGIPLV 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5668816|gb|AAD46042.1|AC007519_27 F16N3.15 [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/338 (56%), Positives = 239/338 (70%), Gaps = 3/338 (0%)

Query: 2   AEVGECSASKPSRE-IWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNS 60
           AE G+ S SKPS +  WAKL P D+RF+D++I  N++VICSEI  SS +KHEWC+IT+N 
Sbjct: 12  AETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNL 71

Query: 61  DLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSN 120
              SA + NKSS+AILVD  +V  +  VDI  G+EI+PGP+ + YL +RF ++P  ES  
Sbjct: 72  GQSSATIHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRT 131

Query: 121 QQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           Q L+ISID EHAKC ICLNIWHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCP CR 
Sbjct: 132 QLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRT 191

Query: 181 VVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHS 240
            VQ+VG+NH+L NI++ IL+  ++LRR  E++A+LDS A I+SNL+I   K+ RR    +
Sbjct: 192 TVQYVGKNHFLKNIQEEILKVDAALRRPAEDIAVLDSSASIQSNLII-GSKRKRRLNMPA 250

Query: 241 PIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSR-NDSVPQHCLGCDRAF 299
           P  EE DS+ L CPQC   I G+ C     HLQC  C GMMP R N  VP HC GCDR F
Sbjct: 251 PTHEERDSLRLQCPQCVANIGGYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPF 310

Query: 300 CGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
           CGAYW ++ V +  S P+C  ETF+PISERT     F+
Sbjct: 311 CGAYWSSENVTQGVSGPVCVRETFRPISERTITRIPFI 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562591|ref|NP_175188.3| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|40823234|gb|AAR92268.1| At1g47570 [Arabidopsis thaliana] gi|46518399|gb|AAS99681.1| At1g47570 [Arabidopsis thaliana] gi|332194066|gb|AEE32187.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/338 (56%), Positives = 239/338 (70%), Gaps = 3/338 (0%)

Query: 2   AEVGECSASKPSRE-IWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNS 60
           AE G+ S SKPS +  WAKL P D+RF+D++I  N++VICSEI  SS +KHEWC+IT+N 
Sbjct: 5   AETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNL 64

Query: 61  DLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSN 120
              SA + NKSS+AILVD  +V  +  VDI  G+EI+PGP+ + YL +RF ++P  ES  
Sbjct: 65  GQSSATIHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRT 124

Query: 121 QQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           Q L+ISID EHAKC ICLNIWHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCP CR 
Sbjct: 125 QLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRT 184

Query: 181 VVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHS 240
            VQ+VG+NH+L NI++ IL+  ++LRR  E++A+LDS A I+SNL+I   K+ RR    +
Sbjct: 185 TVQYVGKNHFLKNIQEEILKVDAALRRPAEDIAVLDSSASIQSNLII-GSKRKRRLNMPA 243

Query: 241 PIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSR-NDSVPQHCLGCDRAF 299
           P  EE DS+ L CPQC   I G+ C     HLQC  C GMMP R N  VP HC GCDR F
Sbjct: 244 PTHEERDSLRLQCPQCVANIGGYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPF 303

Query: 300 CGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
           CGAYW ++ V +  S P+C  ETF+PISERT     F+
Sbjct: 304 CGAYWSSENVTQGVSGPVCVRETFRPISERTITRIPFI 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110737448|dbj|BAF00668.1| hypothetical protein [Arabidopsis thaliana]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/338 (56%), Positives = 237/338 (70%), Gaps = 3/338 (0%)

Query: 2   AEVGECSASKPSRE-IWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNS 60
           AE G+ S SKPS +  WAKL P D+RF+D++I  N++VICSEI  SS +KHEWC+IT+N 
Sbjct: 5   AETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNL 64

Query: 61  DLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSN 120
              SA + NKSS+AILVD  +V  +  VDI  G+EI+PGP  + YL +RF ++P  ES  
Sbjct: 65  GQSSATIHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPGEQGYLQYRFTIMPAPESRT 124

Query: 121 QQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           Q L+ISID EHAKC ICLNIWHDVV  APCLHNFCNGCFSEW+RRS+EK   VLCP CR 
Sbjct: 125 QLLQISIDPEHAKCSICLNIWHDVVAAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRT 184

Query: 181 VVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHS 240
            VQ+VG+NH+L NI++ IL+  ++LRR  E++A+LDS A I+SNL+I   K+ RR    +
Sbjct: 185 TVQYVGKNHFLKNIQEEILKVDAALRRPAEDIAVLDSSASIQSNLII-GSKRKRRLNMPA 243

Query: 241 PIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSR-NDSVPQHCLGCDRAF 299
           P  EE DS+ L CPQC   I G+ C     HLQC  C GMMP R N  VP HC GCDR F
Sbjct: 244 PTHEERDSLRLQCPQCVANIGGYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPF 303

Query: 300 CGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
           CGAYW ++ V +  S P+C  ETF+PISERT     F+
Sbjct: 304 CGAYWSSENVTQGVSGPVCVRETFRPISERTITRIPFI 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846980|ref|XP_002891371.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297337213|gb|EFH67630.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/342 (54%), Positives = 238/342 (69%), Gaps = 7/342 (2%)

Query: 2   AEVGECSASKPSREIWAKLE-----PSDSRFADVDISSNEVVICSEITSSSSDKHEWCKI 56
           AE G+ S SK S + WAKL      P D+RF+D++I SN++VICSEI  SS ++HEWC+I
Sbjct: 4   AETGQSSGSKTSDDAWAKLSVLFPFPLDTRFSDIEIKSNDMVICSEIKPSSVERHEWCRI 63

Query: 57  TRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQ 116
           T+N    SA + NKSS+AILVD+ ++  +  VDI  G+EI+PGP+ + YL +RF ++P  
Sbjct: 64  TKNLGQGSATIHNKSSDAILVDEAVIPKDGAVDIISGSEIVPGPEGQGYLQYRFTIMPAP 123

Query: 117 ESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP 176
           ES  Q L+I ID EHAKC ICLNIWHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCP
Sbjct: 124 ESRTQLLQILIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCP 183

Query: 177 HCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRK 236
            CR  VQ+VG+NH+L NI++ IL+  ++LRR  E++A+LDS A I+SNL+I   K+ RR 
Sbjct: 184 QCRTTVQYVGKNHFLKNIQEDILKVDAALRRPAEDIAVLDSSASIQSNLII-GSKRKRRL 242

Query: 237 RAHSPIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSR-NDSVPQHCLGC 295
              SP  EE D++ L CPQC   I  + C     HLQC  C GMMP R N  VP HC GC
Sbjct: 243 NMPSPTLEERDNLRLQCPQCVANIGSYRCEHHGAHLQCHMCQGMMPFRANLQVPLHCKGC 302

Query: 296 DRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
           DR FCGAYW ++ V +  S P+C  ETF+PISERT     F+
Sbjct: 303 DRPFCGAYWSSENVTQGVSSPVCGRETFRPISERTITRIPFI 344

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2015318	466	AT1G47570 [Arabidopsis thalian	0.985	0.718	0.565	3.2e-104
UNIPROTKB|Q6P256	626	chfr "E3 ubiquitin-protein lig	0.355	0.193	0.318	2.1e-17
UNIPROTKB|Q5FWP4	625	chfr "E3 ubiquitin-protein lig	0.355	0.193	0.318	6.8e-17
UNIPROTKB|F5GWT6	349	CHFR "E3 ubiquitin-protein lig	0.355	0.346	0.326	7.5e-17
UNIPROTKB|Q5RF77	571	CHFR "E3 ubiquitin-protein lig	0.355	0.211	0.326	3.1e-16
ZFIN|ZDB-GENE-030131-3522	637	chfr "checkpoint with forkhead	0.311	0.166	0.302	3.3e-16
UNIPROTKB|Q96EP1	664	CHFR "E3 ubiquitin-protein lig	0.355	0.182	0.326	1.8e-15
RGD|1306360	663	Chfr "checkpoint with forkhead	0.688	0.352	0.267	2.8e-15
UNIPROTKB|F1LN16	664	Chfr "Protein Chfr" [Rattus no	0.688	0.352	0.267	2.8e-15
UNIPROTKB|E1BBP0	663	CHFR "Uncharacterized protein"	0.320	0.164	0.368	2.9e-15

TAIR|locus:2015318 AT1G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 191/338 (56%), Positives = 239/338 (70%)

Query:     2 AEVGECSASKPSRE-IWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKITRNS 60
             AE G+ S SKPS +  WAKL P D+RF+D++I  N++VICSEI  SS +KHEWC+IT+N 
Sbjct:     5 AETGQSSGSKPSDDDAWAKLVPLDTRFSDIEIRCNDMVICSEIKPSSLEKHEWCRITKNL 64

Query:    61 DLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSN 120
                SA + NKSS+AILVD  +V  +  VDI  G+EI+PGP+ + YL +RF ++P  ES  
Sbjct:    65 GQSSATIHNKSSDAILVDKAVVPKDGAVDIISGSEIVPGPEEQGYLQYRFTIMPAPESRT 124

Query:   121 QQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
             Q L+ISID EHAKC ICLNIWHDVVT APCLHNFCNGCFSEW+RRS+EK   VLCP CR 
Sbjct:   125 QLLQISIDPEHAKCSICLNIWHDVVTAAPCLHNFCNGCFSEWMRRSEEKHKHVLCPQCRT 184

Query:   181 VVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHS 240
              VQ+VG+NH+L NI++ IL+  ++LRR  E++A+LDS A I+SNL+I   K+ RR    +
Sbjct:   185 TVQYVGKNHFLKNIQEEILKVDAALRRPAEDIAVLDSSASIQSNLII-GSKRKRRLNMPA 243

Query:   241 PIDEESDSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSR-NDSVPQHCLGCDRAF 299
             P  EE DS+ L CPQC   I G+ C     HLQC  C GMMP R N  VP HC GCDR F
Sbjct:   244 PTHEERDSLRLQCPQCVANIGGYRCEHHGAHLQCHLCQGMMPFRANLQVPLHCKGCDRPF 303

Query:   300 CGAYWHAQMVARSDSQPMCSHETFKPISERTSLGFHFL 337
             CGAYW ++ V +  S P+C  ETF+PISERT     F+
Sbjct:   304 CGAYWSSENVTQGVSGPVCVRETFRPISERTITRIPFI 341

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

UNIPROTKB|Q6P256 chfr "E3 ubiquitin-protein ligase CHFR" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 190 (71.9 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
 Identities = 44/138 (31%), Positives = 67/138 (48%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   263 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 316

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
              L+N+ ++ L  H    RS+E+   +D+   I  +++   +R         +      S 
Sbjct:   317 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 376

Query:   242 IDEESDSIELP---CPQC 256
             +D ES  I  P   C QC
Sbjct:   377 VDSESSDISQPYTVCRQC 394

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q5FWP4 chfr "E3 ubiquitin-protein ligase CHFR" [Xenopus laevis (taxid:8355)]

 Score = 190 (71.9 bits), Expect = 6.8e-17, Sum P(3) = 6.8e-17
 Identities = 44/138 (31%), Positives = 67/138 (48%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC  + HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   262 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 315

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
              L+N+ ++ L  H    RS+E+   +D+   I  +++   +R         +      S 
Sbjct:   316 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 375

Query:   242 IDEESDSIELP---CPQC 256
             +D ES  I  P   C QC
Sbjct:   376 VDSESSDISQPYTVCRQC 393

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=IDA

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F5GWT6 CHFR "E3 ubiquitin-protein ligase CHFR" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
 Identities = 45/138 (32%), Positives = 69/138 (50%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   100 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 153

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
              L+N+ ++ L  H    RS+E+V  +D+   I  +++   +R         +      S 
Sbjct:   154 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 213

Query:   242 IDEESDSIELP---CPQC 256
             +D ES  I  P   C QC
Sbjct:   214 VDSESSDISQPYVVCRQC 231

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5RF77 CHFR "E3 ubiquitin-protein ligase CHFR" [Pongo abelii (taxid:9601)]

 Score = 199 (75.1 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
 Identities = 45/138 (32%), Positives = 69/138 (50%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   208 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 261

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
              L+N+ ++ L  H    RS+E+V  +D+   I  +++   +R         +      S 
Sbjct:   262 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 321

Query:   242 IDEESDSIELP---CPQC 256
             +D ES  I  P   C QC
Sbjct:   322 VDSESSDISQPYVVCRQC 339

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

ZFIN|ZDB-GENE-030131-3522 chfr "checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 3.3e-16, Sum P(3) = 3.3e-16
 Identities = 36/119 (30%), Positives = 66/119 (55%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC ++ +D ++V PC+H FC  C+S W+ RS        CP CR  V+ + +NH
Sbjct:   273 ESLTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSS------FCPTCRCPVERIRKNH 326

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDS 248
              L+N+ ++ L  H    R+++++  +D+      N + ++  + + +R+ S  DEE+ S
Sbjct:   327 ILNNLVEAYLLQHPEKCRTEDDLRSMDA-----RNKITQDMLQPKVERSFS--DEEASS 378

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|Q96EP1 CHFR "E3 ubiquitin-protein ligase CHFR" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 45/138 (32%), Positives = 69/138 (50%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 353

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
              L+N+ ++ L  H    RS+E+V  +D+   I  +++   +R         +      S 
Sbjct:   354 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 413

Query:   242 IDEESDSIELP---CPQC 256
             +D ES  I  P   C QC
Sbjct:   414 VDSESSDISQPYVVCRQC 431

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IMP;TAS

GO:0016605 "PML body" evidence=IDA

GO:0019941 "modification-dependent protein catabolic process" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

RGD|1306360 Chfr "checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 72/269 (26%), Positives = 119/269 (44%)

Query:    44 TSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDRE 103
             T S S K E   +  N +L S     + + A     ++++ E+  +++   + + G D E
Sbjct:   210 TISISPK-ECSSLVANGELSSLSSVFQDNEASF---SLLKTEDTEELEPAKKKMKG-DGE 264

Query:   104 VYLNFRFKVVP----VQESSNQQLEISIDIEHAK----CCICLNIWHDVVTVAPCLHNFC 155
             + LN +  V       Q SS    + S+  +  +    C IC ++ HD V++ PC+H FC
Sbjct:   265 LDLNLQLSVADQRGIAQTSSEDVKDASVKPDKMEETLTCIICQDLLHDCVSLQPCMHTFC 324

Query:   156 NGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALL 215
               C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +
Sbjct:   325 AACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLLQHPDKSRSEEDVRSM 378

Query:   216 DSYAYIKSNLV---IRNGKKHRRKRAH-----SPIDEESDSIELP---CPQCGT----EI 260
             D+   I  +++   +R         +      S +D ES  I  P   C QC       +
Sbjct:   379 DARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYIVCRQCPEYRRQAV 438

Query:   261 NGFHCNQTTVHLQC-QGCGGMMPSRNDSV 288
                 C      L   Q  GG  PS + S+
Sbjct:   439 QSLPCPVPESELGATQALGGEAPSTSASL 467

GO:0000166 "nucleotide binding" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016605 "PML body" evidence=ISO

GO:0019941 "modification-dependent protein catabolic process" evidence=ISO

UNIPROTKB|F1LN16 Chfr "Protein Chfr" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 72/269 (26%), Positives = 119/269 (44%)

Query:    44 TSSSSDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPDRE 103
             T S S K E   +  N +L S     + + A     ++++ E+  +++   + + G D E
Sbjct:   210 TISISPK-ECSSLVANGELSSLSSVFQDNEASF---SLLKTEDTEELEPAKKKMKG-DGE 264

Query:   104 VYLNFRFKVVP----VQESSNQQLEISIDIEHAK----CCICLNIWHDVVTVAPCLHNFC 155
             + LN +  V       Q SS    + S+  +  +    C IC ++ HD V++ PC+H FC
Sbjct:   265 LDLNLQLSVADQRGIAQTSSEDVKDASVKPDKMEETLTCIICQDLLHDCVSLQPCMHTFC 324

Query:   156 NGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALL 215
               C+S W+ RS       LCP CR  V+ + +NH L+N+ ++ L  H    RS+E+V  +
Sbjct:   325 AACYSGWMERSS------LCPTCRCPVERICKNHILNNLVEAYLLQHPDKSRSEEDVRSM 378

Query:   216 DSYAYIKSNLV---IRNGKKHRRKRAH-----SPIDEESDSIELP---CPQCGT----EI 260
             D+   I  +++   +R         +      S +D ES  I  P   C QC       +
Sbjct:   379 DARNKITQDMLQPKVRRSFSDEEGSSEDLLELSDVDSESSDISQPYIVCRQCPEYRRQAV 438

Query:   261 NGFHCNQTTVHLQC-QGCGGMMPSRNDSV 288
                 C      L   Q  GG  PS + S+
Sbjct:   439 QSLPCPVPESELGATQALGGEAPSTSASL 467

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

UNIPROTKB|E1BBP0 CHFR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
 Identities = 45/122 (36%), Positives = 68/122 (55%)

Query:   130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
             E   C IC ++ HD V++ PC+H FC  C+S W+ RS       LCP CR  V+ + +NH
Sbjct:   300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERS------ALCPTCRCPVERICKNH 353

Query:   190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSI 249
              L+N+ ++ L  H   RRS+E+   L S A    N + ++  + + +RA S  DEE  S 
Sbjct:   354 ILNNLVEAYLLQHPDKRRSEED---LRSMA--ARNKITQDMLQPKVRRAFS--DEEGSSE 406

Query:   250 EL 251
             +L
Sbjct:   407 DL 408

GO:0016605 "PML body" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-05
smart00184	40	smart00184, RING, Ring finger	4e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	9e-05
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	0.003

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
           +C ICL  + + V + PC H FC  C  +WL+  +       CP CR  +
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNT-----CPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           +C ICL++  D V + PC H FC  C   +L++  +      CP CR 
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSK------CPICRT 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 134 CCICLN--IWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           C ICL+     + V V PC H F   C  +WLR S        CP CRA
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNT------CPLCRA 45

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178
           C ICL  +     + PC H FC  C  +WL           CP C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNT-----CPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178
           C ICL    D VT+ PC H FC+ C   WL           CP C
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVT-----CPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGC-FSEWLRRSQE 168
           F+V+  +  S +     I +   KC +CL          PC H FC  C    W      
Sbjct: 194 FQVITKENLSKKNGLPFIPLADYKCFLCLEEPEVPS-CTPCGHLFCLSCLLISW-----T 247

Query: 169 KRSTVLCPHCRAVVQ 183
           K+    CP CRA V 
Sbjct: 248 KKKYEFCPLCRAKVY 262

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PF00498	68	FHA: FHA domain; InterPro: IPR000253 The forkhead-	99.45
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.33
cd00060	102	FHA Forkhead associated domain (FHA); found in euk	99.15
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.11
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.08
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.07
KOG4367	699	consensus Predicted Zn-finger protein [Function un	99.06
TIGR03354	396	VI_FHA type VI secretion system FHA domain protein	99.06
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.98
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.96
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.91
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.9
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.89
COG1716	191	FOG: FHA domain [Signal transduction mechanisms]	98.87
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.86
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.86
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.84
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.82
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.73
PHA02929	238	N1R/p28-like protein; Provisional	98.71
COG3456	430	Predicted component of the type VI protein secreti	98.71
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.68
PHA02926	242	zinc finger-like protein; Provisional	98.67
smart00240	52	FHA Forkhead associated domain. Found in eukaryoti	98.64
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	98.61
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.58
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.58
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.45
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.44
PF14634	44	zf-RING_5: zinc-RING finger domain	98.43
KOG2660	331	consensus Locus-specific chromosome binding protei	98.38
KOG1882	293	consensus Transcriptional regulator SNIP1, contain	98.38
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.31
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.13
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.99
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.98
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.98
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.72
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.7
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.63
COG5152	259	Uncharacterized conserved protein, contains RING a	97.53
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.49
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.47
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.47
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.35
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.22
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.18
KOG1881	793	consensus Anion exchanger adaptor protein Kanadapt	97.17
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.15
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.0
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.75
KOG0245	1221	consensus Kinesin-like protein [Cytoskeleton]	96.73
KOG2293	547	consensus Daxx-interacting protein MSP58/p78, cont	96.61
KOG1880	337	consensus Nuclear inhibitor of phosphatase-1 [Gene	96.58
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.52
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	96.49
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.41
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.21
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.93
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	95.88
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.59
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	95.48
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.43
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.35
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.25
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.07
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	94.55
COG5219	1525	Uncharacterized conserved protein, contains RING Z	94.26
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	94.1
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.97
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	93.67
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.39
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.24
KOG4739	233	consensus Uncharacterized protein involved in syna	93.01
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.73
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	92.52
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	92.51
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.48
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	92.25
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	92.13
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.06
KOG3002	299	consensus Zn finger protein [General function pred	91.78
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	91.6
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.27
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.05
KOG3039	303	consensus Uncharacterized conserved protein [Funct	90.62
COG5175	480	MOT2 Transcriptional repressor [Transcription]	89.82
KOG1001	674	consensus Helicase-like transcription factor HLTF/	89.54
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	89.29
TIGR02500	410	type_III_yscD type III secretion apparatus protein	89.12
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.97
PF04641	260	Rtf2: Rtf2 RING-finger	88.68
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	87.14
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	86.64
PHA03096	284	p28-like protein; Provisional	85.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.55
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	82.58
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	82.34
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	82.29
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	81.49
PF12773	50	DZR: Double zinc ribbon	81.23
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	81.02
PRK14714	1337	DNA polymerase II large subunit; Provisional	80.06

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins

Probab=99.45  E-value=2.1e-13  Score=100.39  Aligned_cols=62  Identities=24%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             eEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccC
Q 019461           37 VVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPG   99 (340)
Q Consensus        37 ~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg   99 (340)
                      ++|||    ++.+.+ .||+.||.|.++.+ ..|+|+|+ |+|||||||+++..+..+.|.+||+|.+|
T Consensus         1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G   68 (68)
T PF00498_consen    1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG   68 (68)
T ss_dssp             EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred             CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence            57999    588888 99999999999977 25999998 89999999999999999999999999876

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.33  E-value=7.4e-13  Score=88.17  Aligned_cols=42  Identities=38%  Similarity=1.054  Sum_probs=32.4

Q ss_pred             eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ||||+++|++|++| +|||+||..||.+|++...  ...+.||.|
T Consensus         1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPS--GSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred             CCccchhhCCcccc-CCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence            89999999999999 9999999999999997654  223789987

>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins

Probab=99.15  E-value=2.9e-10  Score=89.42  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=68.2

Q ss_pred             cEEEEeCCC--CCceeEeeC-CceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCc
Q 019461           17 WAKLEPSDS--RFADVDISS-NEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEE   86 (340)
Q Consensus        17 ~~~L~~~~~--~~~~~~l~~-~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~   86 (340)
                      |+.|.++.+  ....+.|.. ..++|||     ++.+.+ .||+.||.|.++.+. .+++.|. |+||+||||+++..+.
T Consensus         1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~-~~~~~~~~s~~g~~vn~~~~~~~~   79 (102)
T cd00060           1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG-GVVLIDLGSTNGTFVNGQRVSPGE   79 (102)
T ss_pred             CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC-CEEEEECCCCCCeEECCEECCCCC
Confidence            456777665  456678888 8999999     356667 999999999999743 2555555 9999999999999988


Q ss_pred             eeeccCCCeeccCC
Q 019461           87 VVDIKCGTEIIPGP  100 (340)
Q Consensus        87 ~~~l~~gd~I~lg~  100 (340)
                      .+.|.+||.|.+|.
T Consensus        80 ~~~l~~gd~i~ig~   93 (102)
T cd00060          80 PVRLRDGDVIRLGN   93 (102)
T ss_pred             cEECCCCCEEEECC
Confidence            99999999999997

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).

>smart00504 Ubox Modified RING finger domain

Probab=99.11  E-value=7.8e-11  Score=85.28  Aligned_cols=60  Identities=20%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS  197 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~  197 (340)
                      ++.||||++++.+|+.+ +|||+||+.||.+|++..      ..||.|+..+..  +..|..+++.++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~~------~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLSH------GTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHHC------CCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            47899999999999998 999999999999999873      489999998855  7888888888763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.08  E-value=1.6e-10  Score=86.54  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ++|.|||+.+++.+||.+ |+||+|++.+|.+|+....     ..||.++..+..  +.+|..|++.++.|++.+.
T Consensus         3 ~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~-----~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNG-----GTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTS-----SB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             cccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCC-----CCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            579999999999999999 9999999999999998733     599999998876  8999999999999988653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.07  E-value=1.1e-10  Score=113.27  Aligned_cols=72  Identities=28%  Similarity=0.482  Sum_probs=62.4

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ...+..+.|+||+++|.+|+++ +|||+||..||..|+...      ..||.|+..+..  +..|..|.+||+.|....+
T Consensus        21 ~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~------~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~   93 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ------PKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP   93 (397)
T ss_pred             cccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC------CCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence            3455789999999999999987 999999999999999754      379999998876  8899999999999987655


Q ss_pred             c
Q 019461          204 S  204 (340)
Q Consensus       204 ~  204 (340)
                      .
T Consensus        94 ~   94 (397)
T TIGR00599        94 S   94 (397)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.06  E-value=5e-11  Score=113.57  Aligned_cols=35  Identities=31%  Similarity=0.803  Sum_probs=32.4

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWL  163 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~  163 (340)
                      |+|+|.|+||..+|++|+.| ||+|+.|..|....+
T Consensus         1 meeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    1 MEEELKCPVCGSFYREPIIL-PCSHNLCQACARNIL   35 (699)
T ss_pred             CcccccCceehhhccCceEe-ecccHHHHHHHHhhc
Confidence            57899999999999999999 999999999987665

>TIGR03354 VI_FHA type VI secretion system FHA domain protein

Probab=99.06  E-value=2.6e-10  Score=111.71  Aligned_cols=73  Identities=12%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             CceeEeeCCceEEec----ccccCC-c--cccceEEEEEeCCCCeEEEEeccCCceEec--cEecCCCceeeccCCCeec
Q 019461           27 FADVDISSNEVVICS----EITSSS-S--DKHEWCKITRNSDLHSAKMQNKSSNAILVD--DTMVQNEEVVDIKCGTEII   97 (340)
Q Consensus        27 ~~~~~l~~~~~~iGr----~~~~~~-~--vS~~H~~i~~~~~~~~~~i~D~StNgt~vn--g~~i~~~~~~~l~~gd~I~   97 (340)
                      ...+.+....++|||    ++.+.+ .  ||+.||+|.++++  .|+|+|+|+||||||  |.++.++..+.|.+||+|.
T Consensus        16 ~~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I~   93 (396)
T TIGR03354        16 AAQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRLR   93 (396)
T ss_pred             ceEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEEE
Confidence            346688889999999    577777 5  9999999999865  499999999999999  8999999889999999999


Q ss_pred             cCCC
Q 019461           98 PGPD  101 (340)
Q Consensus        98 lg~~  101 (340)
                      +|..
T Consensus        94 iG~~   97 (396)
T TIGR03354        94 LGDY   97 (396)
T ss_pred             ECCE
Confidence            9974

Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.98  E-value=3.6e-10  Score=73.99  Aligned_cols=39  Identities=44%  Similarity=1.096  Sum_probs=32.9

Q ss_pred             eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      |+||++.+.+|+++++|||+||..|+.+|++..      ..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN------PKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT------SB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc------CCCcCC
Confidence            899999999996655999999999999999873      589987

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.96  E-value=5.2e-10  Score=97.70  Aligned_cols=55  Identities=35%  Similarity=0.664  Sum_probs=45.4

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccC----------CCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQE----------KRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~----------~~~~~~CP~Cr~~~~~  184 (340)
                      .+++.|+||++.+.+|+++ +|||.||+.||.+|+.....          .+....||.||..+..
T Consensus        16 ~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            3679999999999999998 99999999999999864311          1235689999998865

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.91  E-value=3.9e-10  Score=104.58  Aligned_cols=69  Identities=28%  Similarity=0.585  Sum_probs=60.8

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~  202 (340)
                      ..++.|+|.||.++|.-|+.+ ||+|+||.-||..++....      .||.|+..+..  ++.|+.|.+||+.|...+
T Consensus        19 ~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~p------~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYKP------QCPTCCVTVTESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccCC------CCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence            345679999999999999998 9999999999999998765      89999999987  899999999998875443

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.90  E-value=3.2e-10  Score=80.90  Aligned_cols=60  Identities=27%  Similarity=0.633  Sum_probs=32.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIE  195 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lv  195 (340)
                      .++.|.|++|.++|++||.+..|.|.||..|+.+.+.        ..||+|+.+...  ++.|+.|.+|+
T Consensus         4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--------~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--------SECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--------TB-SSS--B-S-SS----HHHHHHH
T ss_pred             HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--------CCCCCcCChHHHHHHHhhhhhhccC
Confidence            3467999999999999998879999999999976332        369999988744  89999998875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.89  E-value=3.7e-09  Score=109.54  Aligned_cols=84  Identities=14%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             ccEEEEeCC-C--CCceeEe---eCCceEEec----c-----cccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEec
Q 019461           16 IWAKLEPSD-S--RFADVDI---SSNEVVICS----E-----ITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVD   78 (340)
Q Consensus        16 ~~~~L~~~~-~--~~~~~~l---~~~~~~iGr----~-----~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vn   78 (340)
                      .|- |+|.. +  ....+.|   .+..++|||    +     |.+.+ .||+.||+|.++++.  ++|+|| |+||||||
T Consensus       533 ~w~-l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~--~~~~Dl~S~nGT~v~  609 (668)
T PLN02927        533 EWY-LIPHGDDCCVSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGA--FFLMDLRSEHGTYVT  609 (668)
T ss_pred             CeE-EEecCCCCcccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECCE--EEEEECCCCCccEEe
Confidence            454 55533 2  2345777   455699999    3     46777 999999999999765  999999 99999998


Q ss_pred             cEe-----cCCCceeeccCCCeeccCCCC
Q 019461           79 DTM-----VQNEEVVDIKCGTEIIPGPDR  102 (340)
Q Consensus        79 g~~-----i~~~~~~~l~~gd~I~lg~~~  102 (340)
                      |..     +..+....|.+||+|.+|.++
T Consensus       610 ~~~~~r~~~~p~~~~~l~~~d~I~~g~~~  638 (668)
T PLN02927        610 DNEGRRYRATPNFPARFRSSDIIEFGSDK  638 (668)
T ss_pred             CCCCceEecCCCCceEeCCCCEEEeCCCc
Confidence            777     445678999999999999954

>COG1716 FOG: FHA domain [Signal transduction mechanisms]

Probab=98.87  E-value=4.3e-09  Score=92.79  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=57.8

Q ss_pred             CceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCCCCc
Q 019461           35 NEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGPDRE  103 (340)
Q Consensus        35 ~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~~~~  103 (340)
                      ..++|||    ++.+.+ .|||.||.|.+++..  ++++|+ |+|||||||.++..  .+.+.+||.|.++....
T Consensus        89 ~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~--~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~~~  159 (191)
T COG1716          89 PVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE--VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGTLA  159 (191)
T ss_pred             ceEEeccCCCCCEEcCCCccccceEEEEEeCCc--eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECccce
Confidence            3699999    577777 999999999999776  999999 99999999999996  57999999999998644

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.86  E-value=1.5e-09  Score=74.99  Aligned_cols=47  Identities=40%  Similarity=0.892  Sum_probs=39.8

Q ss_pred             CCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      |+..|.||++...+++.+ ||||. ||..|+.+|++..      ..||.||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLL-PCGHLCFCEECAERLLKRK------KKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHTT------SBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEe-CCCChHHHHHHhHHhcccC------CCCCcCChhhc
Confidence            357899999999999888 99999 9999999999854      48999999875

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.86  E-value=2.3e-09  Score=70.82  Aligned_cols=41  Identities=46%  Similarity=1.173  Sum_probs=35.9

Q ss_pred             eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      |+||++.+.+|+.+++|||+||..|+.+|++..    ..+.||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~----~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS----GSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT----SSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhc----CCccCCcC
Confidence            899999999999555999999999999999853    24789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=3.4e-09  Score=98.60  Aligned_cols=71  Identities=30%  Similarity=0.653  Sum_probs=58.0

Q ss_pred             hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHHHHhc
Q 019461          125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~~~~~  202 (340)
                      .....+++.|+||++.|.+|+++ +|+|+||..|+..++. .     .+.||.||.....+..|..+.++++.+....
T Consensus         7 ~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~-~-----~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    7 LEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE-G-----PLSCPVCRPPSRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC-C-----CcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence            34456899999999999999776 9999999999999887 2     3799999963334678999999988776544

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.82  E-value=2e-09  Score=72.30  Aligned_cols=40  Identities=48%  Similarity=1.165  Sum_probs=33.3

Q ss_pred             eecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461          133 KCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR  179 (340)
Q Consensus       133 ~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr  179 (340)
                      .|+||++.|.   .++.+ +|+|.||.+||.+|++...      .||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~------~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNN------SCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSS------B-TTTH
T ss_pred             CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCC------cCCccC
Confidence            6999999994   44555 9999999999999998754      999997

...

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.73  E-value=6.1e-09  Score=69.43  Aligned_cols=39  Identities=33%  Similarity=0.928  Sum_probs=23.9

Q ss_pred             eccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCC
Q 019461          134 CCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP  176 (340)
Q Consensus       134 C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP  176 (340)
                      ||||++ |.+    |+.| +|||+||..|+.++++.+.  ...+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~--~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSD--RNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred             CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence            899999 888    9998 9999999999999998652  2457887

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.71  E-value=5.2e-09  Score=95.08  Aligned_cols=56  Identities=27%  Similarity=0.678  Sum_probs=44.3

Q ss_pred             cCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchH
Q 019461          129 IEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHY  190 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~  190 (340)
                      .++..|+||++.+.++       ..+.+|+|.||..||.+|++...      +||.||..+..+.++++
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~------tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN------TCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC------CCCCCCCEeeEEeeeee
Confidence            3568999999987654       13338999999999999998653      89999999887655543

>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.71  E-value=1.4e-08  Score=97.59  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             eeEeeCCceEEec----ccccCC---ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCce-eeccCCCeeccCC
Q 019461           29 DVDISSNEVVICS----EITSSS---SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEV-VDIKCGTEIIPGP  100 (340)
Q Consensus        29 ~~~l~~~~~~iGr----~~~~~~---~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~-~~l~~gd~I~lg~  100 (340)
                      ...+..+..+|||    ++.++|   +||+.||.|.+++++  |+|+|.|+||+||||..+..+.. ..|+.||+|.+|.
T Consensus        20 q~~f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG~   97 (430)
T COG3456          20 QKLFDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYRDGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIGR   97 (430)
T ss_pred             hhhhhcCCcccccCCCCCccccCcccccchhheEEEecCCe--EEEEecCCCceeecccccCCCCCccccccCCEEeecc
Confidence            3466788899999    677776   999999999998776  99999999999999999988877 8899999999997


Q ss_pred             CC
Q 019461          101 DR  102 (340)
Q Consensus       101 ~~  102 (340)
                      ..
T Consensus        98 y~   99 (430)
T COG3456          98 YI   99 (430)
T ss_pred             EE
Confidence            43

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.68  E-value=1.8e-08  Score=66.95  Aligned_cols=44  Identities=39%  Similarity=1.056  Sum_probs=38.0

Q ss_pred             eeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461          133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV  181 (340)
Q Consensus       133 ~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~  181 (340)
                      .|+||++.+.+++.+.+|+|.||..|+.+|+....     ..||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~-----~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK-----NTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCc-----CCCCCCCCc
Confidence            48999999988888856999999999999998632     589999875

>PHA02926 zinc finger-like protein; Provisional

Probab=98.67  E-value=1.3e-08  Score=89.99  Aligned_cols=64  Identities=23%  Similarity=0.559  Sum_probs=47.6

Q ss_pred             cccCCceeccccccccCc--------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchH
Q 019461          127 IDIEHAKCCICLNIWHDV--------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHY  190 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~P--------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~  190 (340)
                      ...++..|+||++...++        -.|.+|+|+||..||..|.+...+.+....||.||..+..+.++++
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf  237 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF  237 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence            345679999999986442        1344999999999999999864333345679999999887555443

>smart00240 FHA Forkhead associated domain

Probab=98.64  E-value=4.4e-08  Score=67.71  Aligned_cols=45  Identities=16%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             eEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEecc-CCceEeccEec
Q 019461           37 VVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNKS-SNAILVDDTMV   82 (340)
Q Consensus        37 ~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~S-tNgt~vng~~i   82 (340)
                      ++|||     ++.+++ .||+.||+|.++.+. .|+|.|++ +|||||||+++
T Consensus         1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~-~~~i~d~~s~~gt~vng~~v   52 (52)
T smart00240        1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG-RFYLIDLGSTNGTFVNGKRI   52 (52)
T ss_pred             CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC-eEEEEECCCCCCeeECCEEC
Confidence            36787     466777 999999999998664 69999995 99999999875

Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=2.2e-08  Score=96.16  Aligned_cols=88  Identities=17%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             ccEEEEeCCCCCceeEeeCCceEEecc----cccCC-c-------------cccceEEEEEeCCCCeEEEEeccCCceEe
Q 019461           16 IWAKLEPSDSRFADVDISSNEVVICSE----ITSSS-S-------------DKHEWCKITRNSDLHSAKMQNKSSNAILV   77 (340)
Q Consensus        16 ~~~~L~~~~~~~~~~~l~~~~~~iGr~----~~~~~-~-------------vS~~H~~i~~~~~~~~~~i~D~StNgt~v   77 (340)
                      +|+||+-..-...++++..+.+++||.    ..+.. .             +|..|+++.++...+.++++|.|+|||||
T Consensus        45 ~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~V  124 (475)
T KOG0615|consen   45 PRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFV  124 (475)
T ss_pred             chhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccc
Confidence            599999888889999999999999992    22222 2             45555555555555679999999999999


Q ss_pred             ccEecCCCceeeccCCCeeccCCCCc
Q 019461           78 DDTMVQNEEVVDIKCGTEIIPGPDRE  103 (340)
Q Consensus        78 ng~~i~~~~~~~l~~gd~I~lg~~~~  103 (340)
                      |...++++....|++||+|.++....
T Consensus       125 N~e~i~k~~~r~lkN~dei~is~p~~  150 (475)
T KOG0615|consen  125 NDEMIGKGLSRILKNGDEISISIPAL  150 (475)
T ss_pred             cHhHhhccccccccCCCEEEeccchh
Confidence            99999999999999999999886543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.5e-08  Score=88.81  Aligned_cols=53  Identities=36%  Similarity=0.772  Sum_probs=46.4

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +...+.|.||++.-++||++ .|||-||+.||-+|+....   ....||+|+..+..
T Consensus        44 ~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~---~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRP---NSKECPVCKAEVSI   96 (230)
T ss_pred             CCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcC---CCeeCCcccccccc
Confidence            34689999999999999999 9999999999999998653   45689999988875

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.4e-08  Score=91.39  Aligned_cols=53  Identities=36%  Similarity=0.738  Sum_probs=46.0

Q ss_pred             hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+....|.+|++...+|--+ ||||.||.+||.+|.....      .||.||..+..
T Consensus       233 ~~i~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek~------eCPlCR~~~~p  285 (293)
T KOG0317|consen  233 SSIPEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEKA------ECPLCREKFQP  285 (293)
T ss_pred             ccCCCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHcccc------CCCcccccCCC
Confidence            33455678999999999999887 9999999999999998765      69999998764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.58  E-value=2.6e-08  Score=90.89  Aligned_cols=68  Identities=22%  Similarity=0.356  Sum_probs=58.9

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~  202 (340)
                      ....+.|-||.++|.-|+.+ +|||+||.-||.+++....      .||.||.....  ++.+..+..+++.|....
T Consensus        22 LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~qp------~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          22 LDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQP------FCPVCREDPCESRLRGSSGSREINESHARNR   91 (391)
T ss_pred             chhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCCC------CCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence            34568999999999999999 9999999999999998765      79999998876  788888888888876543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.7e-08  Score=81.62  Aligned_cols=48  Identities=33%  Similarity=0.796  Sum_probs=40.9

Q ss_pred             CCceeccccccccC--ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHD--VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~--Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.||||++-+.+  |+.+ .|||.||..||.+.++...      .||+|++.+..
T Consensus       130 ~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~~------~CP~C~kkIt~  179 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNTN------KCPTCRKKITH  179 (187)
T ss_pred             cccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhCC------CCCCcccccch
Confidence            56899999999864  5566 9999999999999998764      89999987654

>smart00184 RING Ring finger

Probab=98.44  E-value=1.9e-07  Score=59.74  Aligned_cols=39  Identities=44%  Similarity=1.148  Sum_probs=33.9

Q ss_pred             eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      |+||++...+++.+ +|+|.||..|+..|+...     ...||.|
T Consensus         1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~~-----~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKSG-----NNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEe-cCCChHHHHHHHHHHHhC-----cCCCCCC
Confidence            78999998888888 999999999999999833     2579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.43  E-value=1.5e-07  Score=63.23  Aligned_cols=42  Identities=31%  Similarity=0.831  Sum_probs=32.7

Q ss_pred             eeccccccc--cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461          133 KCCICLNIW--HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA  180 (340)
Q Consensus       133 ~C~IC~~~~--~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~  180 (340)
                      .|+||.+.|  ..+..+++|||+||..|+..+. .     ....||.||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~-----~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G-----KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C-----CCCCCcCCCC
Confidence            489999999  3334444999999999999887 2     2368999985

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.38  E-value=1.3e-07  Score=88.11  Aligned_cols=70  Identities=27%  Similarity=0.682  Sum_probs=58.5

Q ss_pred             hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc------cCcchHHHHHHHH
Q 019461          124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF------VGRNHYLHNIEQS  197 (340)
Q Consensus       124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~------~~~n~~l~~lve~  197 (340)
                      +.......++|.+|..+|.++.++..|+|+||++||.+++....      .||.|...+..      ++....|+.|+-.
T Consensus         8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~------~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen    8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK------YCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc------cCCccceeccCccccccCCcchHHHHHHHH
Confidence            34445578999999999999999988999999999999998754      99999987765      5667888888766


Q ss_pred             HH
Q 019461          198 IL  199 (340)
Q Consensus       198 ~~  199 (340)
                      ++
T Consensus        82 LV   83 (331)
T KOG2660|consen   82 LV   83 (331)
T ss_pred             Hc
Confidence            54

>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]

Probab=98.38  E-value=3.7e-07  Score=81.55  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             cccEE--EEeCCCC--CceeEe-eCCceEEecccc-----cCC-ccccceEEEEEeC------CC-----CeEEEEec-c
Q 019461           15 EIWAK--LEPSDSR--FADVDI-SSNEVVICSEIT-----SSS-SDKHEWCKITRNS------DL-----HSAKMQNK-S   71 (340)
Q Consensus        15 ~~~~~--L~~~~~~--~~~~~l-~~~~~~iGr~~~-----~~~-~vS~~H~~i~~~~------~~-----~~~~i~D~-S   71 (340)
                      .+|.+  |.|....  ++...| .++-+++||++.     ++. +-|++||.|.+..      ++     ...||.|| |
T Consensus       169 kP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS  248 (293)
T KOG1882|consen  169 KPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGS  248 (293)
T ss_pred             CchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCC
Confidence            35554  6665442  233333 557799999544     444 7799999997652      21     24899999 9


Q ss_pred             CCceEeccEecCCCceeeccCCCeeccCCCCccee
Q 019461           72 SNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYL  106 (340)
Q Consensus        72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~  106 (340)
                      +||||+|.++|....-+.|..+|+|.+|-...+++
T Consensus       249 ~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~rEyv  283 (293)
T KOG1882|consen  249 GNGTFLNNKVIEPQRYYELREKDVLKFGFSSREYV  283 (293)
T ss_pred             CCcceecCcccCchheeeeecCceeeeccchHHHH
Confidence            99999999999999999999999999986444443

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.31  E-value=5e-07  Score=67.53  Aligned_cols=41  Identities=39%  Similarity=0.972  Sum_probs=33.1

Q ss_pred             eeccccccccC------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461          133 KCCICLNIWHD------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR  179 (340)
Q Consensus       133 ~C~IC~~~~~~------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr  179 (340)
                      .|+||++.|.+            ++.+.+|+|.|...||.+|++...      +||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------cCCCCC
Confidence            49999999933            345558999999999999998764      999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=4.3e-07  Score=85.25  Aligned_cols=66  Identities=27%  Similarity=0.564  Sum_probs=53.1

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHH
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSIL  199 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~  199 (340)
                      .-++.|+||+++++..+++..|+|.||..||...++..+     ..||.||+.+..   |+.......|+..+.
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-----~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-----NECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-----CCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            357899999999999999978999999999999888765     699999999876   555544445554433

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.2e-06  Score=76.72  Aligned_cols=50  Identities=34%  Similarity=0.745  Sum_probs=42.9

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHH-HHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~-~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +.+..|+||++....|..+ +|||.||..||.. |..++.     -.||.||+.+..
T Consensus       213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~-----~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKY-----EFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhcc-----ccCchhhhhccc
Confidence            5678999999999999999 9999999999998 766543     359999988754

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.98  E-value=9.4e-06  Score=76.18  Aligned_cols=50  Identities=22%  Similarity=0.598  Sum_probs=38.2

Q ss_pred             CCceecccccc-ccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNI-WHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~-~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ++..||+|+.. +.+|-   .+.+|||.||.+|+...+..+     ...||.|+..+..
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-----~~~CP~C~~~lrk   55 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----SGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-----CCCCCCCCCccch
Confidence            34689999984 55663   332799999999999987543     3589999987765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=3.8e-06  Score=82.63  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=45.1

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...||||++...-|+.+ .|||.||..||..+|..+. ..+...||.|+..+..
T Consensus       186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~-~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSA-IKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhc-ccCCccCCchhhhccc
Confidence            78999999999999888 7999999999999998762 3445689999988775

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=1.2e-05  Score=78.52  Aligned_cols=65  Identities=28%  Similarity=0.604  Sum_probs=52.6

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc------C-cchHHHHHHHHHHH
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV------G-RNHYLHNIEQSILQ  200 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~------~-~n~~l~~lve~~~~  200 (340)
                      ..++.|.||...|.+|+++ ||||+||..||.+.+...      ..||.||..+..+      . .|+.+..++..|+.
T Consensus        82 ~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~------~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~  153 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQE------TECPLCRDELVELPALEQALSLNRLLCKLITKFLE  153 (398)
T ss_pred             cchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccC------CCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999 999999999999977754      4899999988752      2 25555566666654

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.5e-05  Score=75.89  Aligned_cols=48  Identities=31%  Similarity=0.932  Sum_probs=39.9

Q ss_pred             ceecccccccc--CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+|.||+|.|.  +-+..+||.|.|...||..|+.+..     ..||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-----~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-----TFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-----ccCCCCCCcCCC
Confidence            49999999996  3444559999999999999998764     579999987664

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.5e-05  Score=81.60  Aligned_cols=50  Identities=36%  Similarity=0.916  Sum_probs=43.3

Q ss_pred             cccCCceeccccccccC-----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          127 IDIEHAKCCICLNIWHD-----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~-----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .......|+||.+.+..     |..+ +|+|.|+..|+..|++..+      +||.||..+.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~q------tCP~CR~~~~  341 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQ------TCPTCRTVLY  341 (543)
T ss_pred             hhhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhC------cCCcchhhhh
Confidence            44567899999999998     7777 9999999999999999865      9999998443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=2.5e-05  Score=73.98  Aligned_cols=50  Identities=36%  Similarity=0.839  Sum_probs=42.1

Q ss_pred             ccCCceecccccc-ccC------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNI-WHD------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~-~~~------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..++-.|.||++. ++.            |..| ||||.|...|+..|++.++      +||.||.++..
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERqQ------TCPICr~p~if  346 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQQ------TCPICRRPVIF  346 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhcc------CCCcccCcccc
Confidence            3467799999997 443            4788 9999999999999999876      99999998554

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.63  E-value=4.5e-05  Score=70.23  Aligned_cols=64  Identities=22%  Similarity=0.430  Sum_probs=51.3

Q ss_pred             ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc---ccCcchHHHHHHHHHHH
Q 019461          132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVGRNHYLHNIEQSILQ  200 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~n~~l~~lve~~~~  200 (340)
                      |.|++|..++++|+.+..|+|.||..||...+-.+.     +.||.|...-.   .+.+......-||.+++
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD-----f~CpnC~rkdvlld~l~pD~dk~~EvE~~lk  341 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD-----FKCPNCSRKDVLLDGLTPDIDKKLEVEKALK  341 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc-----ccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence            999999999999999867999999999998887665     89999976322   25666666666666665

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.53  E-value=4.1e-05  Score=66.59  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=41.0

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+.|.||.+.|..||.+ .|||+||..|..+-++..      -.|-+|.+....
T Consensus       196 PF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~kg------~~C~~Cgk~t~G  242 (259)
T COG5152         196 PFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKG------DECGVCGKATYG  242 (259)
T ss_pred             ceeehhchhhccchhhh-hcchhHHHHHHHHHhccC------Ccceecchhhcc
Confidence            57999999999999999 999999999998877655      389999887655

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.49  E-value=6e-05  Score=53.42  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=32.1

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCC
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPH  177 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~  177 (340)
                      .-.+.|||.+..|.+||.-..|+|+|.+..|.+++...    +...||+
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~----~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN----GSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT----S-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc----CCCCCCC
Confidence            45689999999999999877999999999999999432    3578998

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=7.3e-05  Score=69.13  Aligned_cols=48  Identities=35%  Similarity=0.881  Sum_probs=39.1

Q ss_pred             Cceecccccccc--CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          131 HAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       131 ~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ...|.||++-|.  +.+..+||.|.|...|+.+|+..-.     ..||+||..+.
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-----~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-----NKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-----ccCCccCCCCC
Confidence            468999999884  4455559999999999999998433     58999998865

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.47  E-value=0.00011  Score=55.85  Aligned_cols=50  Identities=30%  Similarity=0.626  Sum_probs=37.4

Q ss_pred             Cceecccccccc------------CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          131 HAKCCICLNIWH------------DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       131 ~l~C~IC~~~~~------------~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +-.|+||...|.            -|+.+-.|+|.|...||.+|+....   ....||.||++..
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~---~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS---SKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc---CCCCCCCcCCeee
Confidence            456777766663            2556658999999999999998642   2358999998754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=6.5e-05  Score=77.40  Aligned_cols=50  Identities=34%  Similarity=0.758  Sum_probs=43.7

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...|+||+|..-+.+.+.+ .|||.||..|+.+......     ..||.|...+..
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~etRq-----RKCP~Cn~aFga  690 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYETRQ-----RKCPKCNAAFGA  690 (698)
T ss_pred             HhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHHhc-----CCCCCCCCCCCc
Confidence            3679999999999999998 9999999999999887665     589999887653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00013  Score=67.63  Aligned_cols=47  Identities=28%  Similarity=0.644  Sum_probs=41.4

Q ss_pred             ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      -.|+||+....-|+.+ +|+|.||.-||........     .+|++||.++..
T Consensus         8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~ndk-----~~CavCR~pids   54 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKNDK-----KTCAVCRFPIDS   54 (324)
T ss_pred             CcceeeeccCCcCccc-cccchhhhhhhcchhhcCC-----CCCceecCCCCc
Confidence            4799999999999888 9999999999998766554     579999999876

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00016  Score=66.76  Aligned_cols=47  Identities=26%  Similarity=0.520  Sum_probs=40.9

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      -+.|-||.+.|.+||++ .|+|+||..|....++...      .|++|.+.+..
T Consensus       241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~------~c~vC~~~t~g  287 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGE------KCYVCSQQTHG  287 (313)
T ss_pred             Cccccccccccccchhh-cCCceeehhhhccccccCC------cceeccccccc
Confidence            35799999999999999 9999999999987776543      89999888766

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.18  E-value=0.00011  Score=71.22  Aligned_cols=46  Identities=28%  Similarity=0.665  Sum_probs=37.6

Q ss_pred             ccCCceeccccccccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461          128 DIEHAKCCICLNIWHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV  181 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~  181 (340)
                      ..|.-+||||++.+.+-+   ....|.|+|-..|+..|+.        .+||+||..
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--------~scpvcR~~  220 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--------SSCPVCRYC  220 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--------CcChhhhhh
Confidence            346789999999997654   4448999999999999986        489999753

>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]

Probab=97.17  E-value=0.00027  Score=72.34  Aligned_cols=74  Identities=8%  Similarity=0.028  Sum_probs=58.9

Q ss_pred             ceEEec----ccccCC-ccccceEEEEEeCCCCe---------EEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           36 EVVICS----EITSSS-SDKHEWCKITRNSDLHS---------AKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        36 ~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~---------~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      -++|||    |+.+.. .|||.||.|.+...+-.         |+|.|+ ||.|||+|..++....-+....|+++.+|.
T Consensus       178 ~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v~~fgg  257 (793)
T KOG1881|consen  178 ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHVARFGG  257 (793)
T ss_pred             eEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHHHHhcC
Confidence            378999    666666 89999999988754333         999999 999999999999998777788888888776


Q ss_pred             CCcceecccccc
Q 019461          101 DREVYLNFRFKV  112 (340)
Q Consensus       101 ~~~~~~~y~f~i  112 (340)
                         +...|+|+-
T Consensus       258 ---sTrl~i~Qg  266 (793)
T KOG1881|consen  258 ---STRLYIFQG  266 (793)
T ss_pred             ---ceEEEEeeC
Confidence               344555543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00033  Score=64.12  Aligned_cols=57  Identities=19%  Similarity=0.364  Sum_probs=46.8

Q ss_pred             hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+......+|++|.+.-..|.+..+|+|.||..|+........    .++||.|...+..
T Consensus       232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a----sf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA----SFTCPLCGENVEP  288 (298)
T ss_pred             ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh----hcccCccCCCCcc
Confidence            34556788999999999999999878999999999987655332    5899999887764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.15  E-value=0.00026  Score=69.56  Aligned_cols=51  Identities=35%  Similarity=0.731  Sum_probs=44.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|++|...+.+|+....|||.||..|+..|+...      ..||.|+.....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~------~~cp~~~~~~~~   68 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH------QKCPVCRQELTQ   68 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccC------cCCcccccccch
Confidence            457899999999999999844999999999999999874      489999887765

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.00  E-value=0.00023  Score=73.14  Aligned_cols=50  Identities=28%  Similarity=0.551  Sum_probs=40.2

Q ss_pred             cCCceeccccccccCccEe--CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTV--APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l--~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...-.|++|+.-+.+-...  .+|+|.||..||..|-+..+      +||+||..+..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq------TCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ------TCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc------cCchhhhhhhe
Confidence            4567899999877654221  27999999999999998765      99999998876

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.00081  Score=64.52  Aligned_cols=56  Identities=27%  Similarity=0.755  Sum_probs=42.6

Q ss_pred             cCCceeccccccccCcc-----E--eCCCCCcccHhhHHHHHHhccC-CCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVV-----T--VAPCLHNFCNGCFSEWLRRSQE-KRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv-----~--l~pCgH~FC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~  184 (340)
                      ..+..|.||++...+..     .  +.+|.|.||..|+..|...... ..-...||.||.....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            45789999999887765     2  2379999999999999854321 1224689999998776

>KOG0245 consensus Kinesin-like protein [Cytoskeleton]

Probab=96.73  E-value=0.003  Score=67.16  Aligned_cols=83  Identities=16%  Similarity=0.245  Sum_probs=67.4

Q ss_pred             ccEEEEeCCCC--Cce---eEeeCCceEEec-------ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEec
Q 019461           16 IWAKLEPSDSR--FAD---VDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMV   82 (340)
Q Consensus        16 ~~~~L~~~~~~--~~~---~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i   82 (340)
                      .-+-||-++..  ++.   +.|.++..+|||       ||.+++ .|--.||.|+-++++.-++|.---.--|||||+.|
T Consensus       453 k~phLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v  532 (1221)
T KOG0245|consen  453 KTPHLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLV  532 (1221)
T ss_pred             cCcceeccCCCchhhccEEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCCccceeEccEEc
Confidence            44557776652  233   478889999998       799999 99999999988876655777777788899999999


Q ss_pred             CCCceeeccCCCeeccCC
Q 019461           83 QNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        83 ~~~~~~~l~~gd~I~lg~  100 (340)
                      ..  ..+|..||+|.+|.
T Consensus       533 ~e--p~qL~~GdRiilG~  548 (1221)
T KOG0245|consen  533 TE--PTQLRSGDRIILGG  548 (1221)
T ss_pred             CC--cceeccCCEEEEcC
Confidence            85  57899999999996

>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]

Probab=96.61  E-value=0.0029  Score=62.91  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             ccEEEEeCCCCCceeEeeCCceEEec-------ccccCC-----ccccceEEEEEeCCCCeEEEEeccCCceEeccEecC
Q 019461           16 IWAKLEPSDSRFADVDISSNEVVICS-------EITSSS-----SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQ   83 (340)
Q Consensus        16 ~~~~L~~~~~~~~~~~l~~~~~~iGr-------~~~~~~-----~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~   83 (340)
                      ..|.+--+.+.+..+.+.+.+++|||       ||++..     .|||+-+.|....++ .|+|.++..-..||||..|.
T Consensus       429 ~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~G-sF~IkNlGK~~I~vng~~l~  507 (547)
T KOG2293|consen  429 FHGAIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDG-SFFIKNLGKRSILVNGGELD  507 (547)
T ss_pred             hcceeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCC-cEEeccCcceeEEeCCcccc
Confidence            45556667777788899999999999       455442     799999999887554 79999999999999999999


Q ss_pred             CCceeeccCCCeeccCCCCcceeccccccc
Q 019461           84 NEEVVDIKCGTEIIPGPDREVYLNFRFKVV  113 (340)
Q Consensus        84 ~~~~~~l~~gd~I~lg~~~~~~~~y~f~i~  113 (340)
                      .|+.+.|++.-.|.+..     ..|+|.+.
T Consensus       508 ~gq~~~L~~nclveIrg-----~~FiF~~N  532 (547)
T KOG2293|consen  508 RGQKVILKNNCLVEIRG-----LRFIFEIN  532 (547)
T ss_pred             CCceEEeccCcEEEEcc-----ceEEEeec
Confidence            99999999988776543     45666544

>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]

Probab=96.58  E-value=0.0012  Score=61.32  Aligned_cols=70  Identities=9%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             EeeCCceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           31 DISSNEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        31 ~l~~~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      .+.+..+.+||     |..++. ..||.|+.+....-...+++.|+ |+.|||+...++.....+++..|....+|-
T Consensus        34 iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fga  110 (337)
T KOG1880|consen   34 IDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGA  110 (337)
T ss_pred             hhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEec
Confidence            44556799999     456665 89999999988876767999999 999999999999999999999998887775

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.0043  Score=59.97  Aligned_cols=65  Identities=20%  Similarity=0.501  Sum_probs=41.6

Q ss_pred             CCceecccccccc--CccEeCCCCCcccHhhHHHHHHhcc--CCCCCcCCCCCCccccccCcchHHHHHHH
Q 019461          130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQ--EKRSTVLCPHCRAVVQFVGRNHYLHNIEQ  196 (340)
Q Consensus       130 e~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~--~~~~~~~CP~Cr~~~~~~~~n~~l~~lve  196 (340)
                      ..+.|.||++...  .-+..+||+|.||++|+..+.....  .......||.+...-...+  -.+.++|+
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~--g~vKelvg  251 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP--GQVKELVG  251 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc--hHHHHHHH
Confidence            4679999999763  4555569999999999998875321  1123467887654332221  24555554

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=96.49  E-value=0.009  Score=60.89  Aligned_cols=88  Identities=6%  Similarity=0.043  Sum_probs=76.7

Q ss_pred             cEEEEeCCCCCceeEeeCCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCC
Q 019461           17 WAKLEPSDSRFADVDISSNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCG   93 (340)
Q Consensus        17 ~~~L~~~~~~~~~~~l~~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~g   93 (340)
                      .-.|+|.++..+.|.|.....+|||  +-.+.| .-||+-.++.-+-....+.+.-|..|-+-|||+.++++..+.|++|
T Consensus        14 ~c~l~~~~~~~~~~~~~~~~~~~gr~pet~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~g   93 (526)
T TIGR01663        14 ICTLKPGEAEHHFIHLDAGALFLGRGPETGIRDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGHG   93 (526)
T ss_pred             eeEecCCCCCCCeeccCCCceEEccCcccccchhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecCC
Confidence            3447888888899999989999999  566777 8999999999887777799999999999999999999999999999


Q ss_pred             CeeccCCCCcc
Q 019461           94 TEIIPGPDREV  104 (340)
Q Consensus        94 d~I~lg~~~~~  104 (340)
                      |.+.+....-.
T Consensus        94 ~~l~~v~~~~~  104 (526)
T TIGR01663        94 DLLEIVNGLHP  104 (526)
T ss_pred             CEEEEeccccc
Confidence            99998875543

Note that the EC number for the kinase function is: 2.7.1.78

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.41  E-value=0.0016  Score=48.13  Aligned_cols=53  Identities=28%  Similarity=0.595  Sum_probs=25.0

Q ss_pred             Cceecccccccc-C---ccEeC---CCCCcccHhhHHHHHHhccCCCC-----CcCCCCCCcccc
Q 019461          131 HAKCCICLNIWH-D---VVTVA---PCLHNFCNGCFSEWLRRSQEKRS-----TVLCPHCRAVVQ  183 (340)
Q Consensus       131 ~l~C~IC~~~~~-~---Pv~l~---pCgH~FC~~Cl~~~~~~~~~~~~-----~~~CP~Cr~~~~  183 (340)
                      ++.|+||...+. +   |...=   .|+..|...||.+|+........     ...||.|++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            578999998765 2   32221   48999999999999986432111     236999998875

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.21  E-value=0.0022  Score=63.53  Aligned_cols=55  Identities=25%  Similarity=0.667  Sum_probs=44.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...+..|.+|.+.-.+++.. .|.|.||+.|+.++...-.+.. ..+||+|...+..
T Consensus       533 nk~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~-nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENN-NVTCPVCHIGLSI  587 (791)
T ss_pred             ccCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhccc-CCCCccccccccc
Confidence            34678999999999999999 9999999999988876543222 3899999876653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.0072  Score=57.10  Aligned_cols=62  Identities=29%  Similarity=0.659  Sum_probs=50.3

Q ss_pred             Cceeccccccc------cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc-------cCcchHHHHHHHH
Q 019461          131 HAKCCICLNIW------HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF-------VGRNHYLHNIEQS  197 (340)
Q Consensus       131 ~l~C~IC~~~~------~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~-------~~~n~~l~~lve~  197 (340)
                      .+.|-||.+.|      +-|..| .|||+||..|+........     ..||.||.....       +..|+.+..+++.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~-----i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~   76 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSR-----ILCPFCRETTEIPDGDVKSLQKNFALLQAIEH   76 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCce-----eeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence            46789999887      468888 8999999999998877654     689999998432       7788888888876


Q ss_pred             H
Q 019461          198 I  198 (340)
Q Consensus       198 ~  198 (340)
                      .
T Consensus        77 ~   77 (296)
T KOG4185|consen   77 M   77 (296)
T ss_pred             H
Confidence            5

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0063  Score=57.94  Aligned_cols=49  Identities=33%  Similarity=0.768  Sum_probs=41.1

Q ss_pred             cCCceeccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +....|-||+.-.++-+.| ||.| -.|..|.....-+.+      .||.||+.+..
T Consensus       288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~q~n------~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRYQTN------NCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHHhhc------CCCccccchHh
Confidence            4468999999999999888 9999 469999987765544      79999998765

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.59  E-value=0.0046  Score=59.41  Aligned_cols=49  Identities=31%  Similarity=0.738  Sum_probs=41.4

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .-.|.||-+-=++-..- ||||-.|..|+..|.....    ...||.||.++..
T Consensus       369 FeLCKICaendKdvkIE-PCGHLlCt~CLa~WQ~sd~----gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIE-PCGHLLCTSCLAAWQDSDE----GQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHHhhccCCCcccc-cccchHHHHHHHhhcccCC----CCCCCceeeEecc
Confidence            44799999988888777 9999999999999986542    4689999999876

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.025  Score=55.57  Aligned_cols=48  Identities=23%  Similarity=0.596  Sum_probs=33.6

Q ss_pred             CCceeccccccccCc----cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          130 EHAKCCICLNIWHDV----VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       130 e~l~C~IC~~~~~~P----v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ...+|.||..-...+    .++ -|+|.||..|+.+........+....||.=
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~~~~~~~~~C~~~  196 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVKLLSGTVIRCPHD  196 (384)
T ss_pred             ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence            467999999433322    233 699999999999988755434456788743

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.004  Score=43.07  Aligned_cols=47  Identities=30%  Similarity=0.564  Sum_probs=38.6

Q ss_pred             ceeccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      -.|.||.+--.+-|.- -||| -.|..|-.+.++...     ..||.||+++..
T Consensus         8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~~~-----g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKALH-----GCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHccC-----CcCcchhhHHHH
Confidence            5799999998888877 8999 569999888776432     589999998764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.35  E-value=0.017  Score=39.56  Aligned_cols=42  Identities=26%  Similarity=0.679  Sum_probs=32.6

Q ss_pred             eeccccc--cccCccEeCCCC-----CcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461          133 KCCICLN--IWHDVVTVAPCL-----HNFCNGCFSEWLRRSQEKRSTVLCPHCR  179 (340)
Q Consensus       133 ~C~IC~~--~~~~Pv~l~pCg-----H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr  179 (340)
                      .|-||++  .-.+|... ||.     |.+...|+.+|+..+.    ...||+|.
T Consensus         1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~----~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESG----NKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcC----CCcCCCCC
Confidence            3789987  34567766 995     7899999999998764    35899984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.015  Score=56.20  Aligned_cols=50  Identities=28%  Similarity=0.731  Sum_probs=40.2

Q ss_pred             CCceeccccccccCc-----cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDV-----VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~P-----v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...+||||++-+.-|     +.+ .|||-|-..|+++|+.+.    ....||.|..+...
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl-~cghlFgs~cie~wl~k~----~~~~cp~c~~katk   57 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSL-QCGHLFGSQCIEKWLGKK----TKMQCPLCSGKATK   57 (463)
T ss_pred             ccccCceeeeeeeecCceEEeee-cccccccHHHHHHHHhhh----hhhhCcccCChhHH
Confidence            457999999998655     455 899999999999999532    35789999877654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.011  Score=58.35  Aligned_cols=50  Identities=26%  Similarity=0.773  Sum_probs=37.8

Q ss_pred             cCCceecccccccc-----C-----------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWH-----D-----------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~-----~-----------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +....|+||+....     .           -.++.||.|.|...|+.+|+..-+     ..||+||..+.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-----l~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-----LICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-----ccCCccCCCCC
Confidence            45678999996541     0           123449999999999999998543     68999998764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=0.01  Score=54.42  Aligned_cols=50  Identities=22%  Similarity=0.576  Sum_probs=39.3

Q ss_pred             CCceeccccccccC----------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHD----------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~----------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ++-.|+||.+-+..          -.+| +|+|.|...||..|---++    ..+||.|++.+..
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGK----kqtCPYCKekVdl  282 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGK----KQTCPYCKEKVDL  282 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecC----CCCCchHHHHhhH
Confidence            56689999987643          3467 9999999999999976443    3589999988765

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.26  E-value=0.016  Score=61.18  Aligned_cols=50  Identities=28%  Similarity=0.759  Sum_probs=38.9

Q ss_pred             CCceecccccccc-CccEe-----CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIWH-DVVTV-----APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~~-~Pv~l-----~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      -.-.|+||..++. --.++     .-|.|-|..+|+-+|++.++    ..+||.||..++
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~----~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA----RSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC----CCCCCccccccc
Confidence            4568999999886 11222     14999999999999999764    579999998765

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=0.011  Score=43.85  Aligned_cols=48  Identities=33%  Similarity=0.697  Sum_probs=35.5

Q ss_pred             eecccccccc------------CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          133 KCCICLNIWH------------DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       133 ~C~IC~~~~~------------~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +|.||.-.|.            -|.++--|.|.|-..||.+|+....   ....||.||+..+
T Consensus        22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t---sq~~CPmcRq~~~   81 (84)
T KOG1493|consen   22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT---SQGQCPMCRQTWQ   81 (84)
T ss_pred             ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc---ccccCCcchheeE
Confidence            7777776663            1444435999999999999998654   2358999998764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.97  E-value=0.035  Score=41.55  Aligned_cols=30  Identities=30%  Similarity=0.721  Sum_probs=26.4

Q ss_pred             CCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          149 PCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       149 pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      -|.|.|...||.+|+...+      .||.+|++...
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~------~CPld~q~w~~   82 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKG------VCPLDRQTWVL   82 (88)
T ss_pred             ecchHHHHHHHHHHHhhCC------CCCCCCceeEE
Confidence            5999999999999999865      89999987654

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=93.67  E-value=0.1  Score=55.56  Aligned_cols=100  Identities=16%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             ccccCCCCCccccEEEEeCCC----CCceeEeeCCceEEec------ccccCC-ccccceEEEEEeCCCCeEEEEeccCC
Q 019461            5 GECSASKPSREIWAKLEPSDS----RFADVDISSNEVVICS------EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSN   73 (340)
Q Consensus         5 ~~~~~~~~~~~~~~~L~~~~~----~~~~~~l~~~~~~iGr------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StN   73 (340)
                      |..+.+.++++.-..||-+..    +...|.|..+.+-+|.      .|.+.+ .|-.+||.|....+.  ++++-.+++
T Consensus       344 ~~v~g~~~~~~~lPvLve~s~dG~~s~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~meGV--vTvTP~~~D  421 (1629)
T KOG1892|consen  344 GSVYGSTLPPEKLPVLVELSPDGSDSRKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEGV--VTVTPRSMD  421 (1629)
T ss_pred             CcccCCCCCcccCcEEEEEcCCCCCcceeEEeccCceeccccccCCcceeeeCCCCCccccchhhccce--EEecccccc
Confidence            455666667787777876443    2255788888888998      367777 899999999887655  999999875


Q ss_pred             c-eEeccEecCCCceeeccCCCeeccCCCCcceecccccc
Q 019461           74 A-ILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKV  112 (340)
Q Consensus        74 g-t~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i  112 (340)
                      + |||||.+|..  ...|.+|+.|.+|.    .-+|+|..
T Consensus       422 A~t~VnGh~isq--ttiL~~G~~v~fGa----~hsfkF~d  455 (1629)
T KOG1892|consen  422 AETYVNGHRISQ--TTILQSGMKVQFGA----SHSFKFVD  455 (1629)
T ss_pred             hhhhccceecch--hhhhccCCEEEecc----ceeEEecC
Confidence            4 8999999875  56899999999997    33455543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.046  Score=51.95  Aligned_cols=51  Identities=31%  Similarity=0.595  Sum_probs=43.2

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+.|+-.||||.---.+.+.. ||+|.-|..||.+.+.+.+      .|-.|+..+..
T Consensus       418 p~sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~k------~CFfCktTv~~  468 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNCK------RCFFCKTTVID  468 (489)
T ss_pred             CCcccccCcceecccchhhcc-CCCCchHHHHHHHHHhcCC------eeeEecceeee
Confidence            446888999999888888888 9999999999999988764      89999877653

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.24  E-value=0.14  Score=43.47  Aligned_cols=56  Identities=23%  Similarity=0.572  Sum_probs=37.6

Q ss_pred             CCceeccccccccCccEeCC-----------CCCcc-cHhhHHHHHHhccC-------------------------CCCC
Q 019461          130 EHAKCCICLNIWHDVVTVAP-----------CLHNF-CNGCFSEWLRRSQE-------------------------KRST  172 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~p-----------CgH~F-C~~Cl~~~~~~~~~-------------------------~~~~  172 (340)
                      |+.+||||++.-++.|.|+-           |+.+| ...||.++.+....                         ....
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE   80 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence            46899999999999999841           33222 23577766543111                         1125


Q ss_pred             cCCCCCCcccccc
Q 019461          173 VLCPHCRAVVQFV  185 (340)
Q Consensus       173 ~~CP~Cr~~~~~~  185 (340)
                      ..||.||..+...
T Consensus        81 L~CPLCRG~V~GW   93 (162)
T PF07800_consen   81 LACPLCRGEVKGW   93 (162)
T ss_pred             ccCccccCceece
Confidence            7899999999873

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.01  E-value=0.034  Score=50.36  Aligned_cols=47  Identities=23%  Similarity=0.699  Sum_probs=33.5

Q ss_pred             Cceeccccccc-cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc
Q 019461          131 HAKCCICLNIW-HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV  185 (340)
Q Consensus       131 ~l~C~IC~~~~-~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~  185 (340)
                      ...|..|...- .+|..|+.|+|.||..|......        -.||.|++.+..+
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--------~~C~lCkk~ir~i   50 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--------DVCPLCKKSIRII   50 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCc--------cccccccceeeee
Confidence            34677666532 56777779999999999753221        2799999997763

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.73  E-value=0.02  Score=53.00  Aligned_cols=44  Identities=30%  Similarity=0.628  Sum_probs=35.2

Q ss_pred             CCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....|.||++.-.+.+.| +|||. -|..|-.+.          ..||+||+.+..
T Consensus       299 ~~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm----------~eCPICRqyi~r  343 (350)
T KOG4275|consen  299 TRRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM----------NECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHHhcCCcceEEe-ecCcEEeehhhcccc----------ccCchHHHHHHH
Confidence            367899999999999999 99995 488884332          279999987654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=92.52  E-value=0.079  Score=36.01  Aligned_cols=44  Identities=25%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ecccccccc--CccEe-CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461          134 CCICLNIWH--DVVTV-APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV  182 (340)
Q Consensus       134 C~IC~~~~~--~Pv~l-~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~  182 (340)
                      ||+|.+.+.  +--.. =+|++..|..|..+.+....     ..||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~-----g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEG-----GRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS------SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccC-----CCCCCCCCCC
Confidence            677777662  21122 15888999999988876432     5899999864

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.51  E-value=0.2  Score=46.62  Aligned_cols=47  Identities=19%  Similarity=0.633  Sum_probs=35.6

Q ss_pred             eeccccc-cccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          133 KCCICLN-IWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       133 ~C~IC~~-~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .||+|+. .|.+|   ....+|+|+.|.+|+...+..+.     ..||.|...+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~-----~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP-----AQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC-----CCCCcccchhhh
Confidence            4899985 56666   22238999999999999887654     789999766543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.48  E-value=0.072  Score=51.30  Aligned_cols=49  Identities=29%  Similarity=0.710  Sum_probs=34.1

Q ss_pred             ceeccccccccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          132 AKCCICLNIWHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       132 l~C~IC~~~~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ..|.||.+.+-.-.   .+-.|||+|...|+..|+....   ..-.||+|+-.+.
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P---s~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP---SNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC---ccCCCCceeeccc
Confidence            47999977663221   1113999999999999998653   1148999984433

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=92.25  E-value=0.15  Score=42.12  Aligned_cols=57  Identities=21%  Similarity=0.551  Sum_probs=45.8

Q ss_pred             hccccCCceeccccccccCccEeCC---CCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          125 ISIDIEHAKCCICLNIWHDVVTVAP---CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       125 ~~~~~e~l~C~IC~~~~~~Pv~l~p---CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +-.+..-..|.||.+...+...|-|   ||-+.|..|....|+...   ..-.||.|+..+..
T Consensus        74 vF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~---~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   74 VFLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN---LYPVCPVCKTSFKS  133 (140)
T ss_pred             eecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc---cCCCCCcccccccc
Confidence            3444567899999999988877755   999999999999998764   23479999987764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.13  E-value=0.095  Score=41.17  Aligned_cols=27  Identities=33%  Similarity=0.786  Sum_probs=24.3

Q ss_pred             CCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461          149 PCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV  181 (340)
Q Consensus       149 pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~  181 (340)
                      -|.|.|...||.+|++..+      .||.|.+.
T Consensus        80 ~CNHaFH~hCisrWlktr~------vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRN------VCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhhcC------cCCCcCcc
Confidence            4999999999999999886      89999765

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.06  E-value=0.055  Score=52.14  Aligned_cols=51  Identities=27%  Similarity=0.582  Sum_probs=39.6

Q ss_pred             cCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +-+|.|..|.+.+-   +-...+||.|.|..+|+.+++.++    +.-+||.||+...
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n----~~rsCP~CrklrS  416 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN----GTRSCPNCRKLRS  416 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC----CCCCCccHHHHHh
Confidence            45799999999873   223445999999999999999665    3578999995444

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=91.78  E-value=0.13  Score=48.82  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=46.7

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHH
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSI  198 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~  198 (340)
                      ...+-|.||||.+.+..|+.-=+=||.-|..|-.+..         ..||.||..+.. .+++.+..+++..
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~---------~~CP~Cr~~~g~-~R~~amEkV~e~~  105 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS---------NKCPTCRLPIGN-IRCRAMEKVAEAV  105 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhhc---------ccCCcccccccc-HHHHHHHHHHHhc
Confidence            3457899999999999997752337999999975322         379999999884 4677777776543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.079  Score=50.66  Aligned_cols=46  Identities=30%  Similarity=0.628  Sum_probs=36.0

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .....|.||.+-..+.+.+ ||||.-|  |..-....       ..||.||..+..
T Consensus       303 ~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~l-------~~CPvCR~rI~~  348 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKHL-------PQCPVCRQRIRL  348 (355)
T ss_pred             CCCCceEEecCCccceeee-cCCcEEE--chHHHhhC-------CCCchhHHHHHH
Confidence            3467899999999998888 9999977  76544332       369999998765

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.27  E-value=0.1  Score=36.40  Aligned_cols=45  Identities=24%  Similarity=0.589  Sum_probs=34.6

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .+..|-.|...-...+++ ||+|..|..|...+-.        ..||.|..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~rY--------ngCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGERY--------NGCPFCGTPFE   50 (55)
T ss_pred             cceeEEEccccccccccc-cccceeeccccChhhc--------cCCCCCCCccc
Confidence            456777788777778788 9999999999865432        26999988764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.05  E-value=0.2  Score=47.69  Aligned_cols=56  Identities=25%  Similarity=0.460  Sum_probs=41.8

Q ss_pred             hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+++...|-||-+-+.=-..+ ||+|..|.-|..+...--.    ...||.||.....
T Consensus        54 addtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~e~  109 (493)
T COG5236          54 ADDTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYM----QKGCPLCRTETEA  109 (493)
T ss_pred             ccccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHh----ccCCCccccccce
Confidence            345677889999999987765566 9999999999876433211    2589999987544

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.62  E-value=0.24  Score=45.04  Aligned_cols=49  Identities=12%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             CCceeccccccccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.||+|.+.|.+.   +.|-||||.||..|.++.++..      ..||+|..+...
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D------~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD------MVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc------ccccCCCCcCcc
Confidence            678999999999764   3444999999999999988765      489999887664

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=89.82  E-value=0.27  Score=46.62  Aligned_cols=52  Identities=27%  Similarity=0.563  Sum_probs=36.2

Q ss_pred             ccccCCceecccccccc--Cc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          126 SIDIEHAKCCICLNIWH--DV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~--~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +.++++. ||+|.+.+.  +-  .-. |||-..|.-|.......-+     ..||.||.....
T Consensus        10 sedeed~-cplcie~mditdknf~pc-~cgy~ic~fc~~~irq~ln-----grcpacrr~y~d   65 (480)
T COG5175          10 SEDEEDY-CPLCIEPMDITDKNFFPC-PCGYQICQFCYNNIRQNLN-----GRCPACRRKYDD   65 (480)
T ss_pred             ccccccc-CcccccccccccCCcccC-CcccHHHHHHHHHHHhhcc-----CCChHhhhhccc
Confidence            3445555 999998763  21  223 7888889999877655443     489999987765

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=89.54  E-value=0.14  Score=53.89  Aligned_cols=47  Identities=30%  Similarity=0.760  Sum_probs=39.3

Q ss_pred             ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..|.+|.+ ...++.+ +|+|.||..|+........    ...||.||..+..
T Consensus       455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~----~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSE----NAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceee-cccchHHHHHHHhcccccc----CCCCcHHHHHHHH
Confidence            89999999 7777777 9999999999998887654    2379999987664

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=89.29  E-value=0.11  Score=53.99  Aligned_cols=71  Identities=17%  Similarity=0.389  Sum_probs=50.7

Q ss_pred             hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHH
Q 019461          125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSIL  199 (340)
Q Consensus       125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~  199 (340)
                      +..+...+.|+||...+++|+.+ .|.|.||..|+...+...+   ....||+|+..+..  .+.......++..++
T Consensus        15 i~~~~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~---~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l   87 (684)
T KOG4362|consen   15 INAMQKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKK---GPKQCALCKSDIEKRSLRESPRFSQLSKESL   87 (684)
T ss_pred             HHHHhhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccC---ccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence            34556789999999999999887 9999999999876554332   25689999866654  333444444454443

>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family

Probab=89.12  E-value=1.1  Score=44.41  Aligned_cols=57  Identities=7%  Similarity=0.042  Sum_probs=43.3

Q ss_pred             CceeEeeCCceEEe-c----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEecc--EecCCCc
Q 019461           27 FADVDISSNEVVIC-S----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDD--TMVQNEE   86 (340)
Q Consensus        27 ~~~~~l~~~~~~iG-r----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng--~~i~~~~   86 (340)
                      ..++.|..+.++|| +    ++.+.+ .||++|+.|....+.  +.+.+. ..+.++||  .....++
T Consensus        12 G~~~~L~~g~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~~--~~l~~~-~~~~~~~g~~~~~~~g~   76 (410)
T TIGR02500        12 GAELPLPEGNLVLGTDAADCDIVLSDGGIAAVHVSLHVRLEG--VTLAGA-VEPAWEEGGVLPDEEGT   76 (410)
T ss_pred             CcEEECCCCceEeccCCCCcEEEeCCCCccchheEEEEcCce--EEEecC-CcceeECCcccccCCCC
Confidence            45678888999999 6    688888 999999999998654  777754 55677888  4444443

This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.97  E-value=0.19  Score=51.47  Aligned_cols=38  Identities=26%  Similarity=0.565  Sum_probs=31.6

Q ss_pred             cccCCceeccccccc----cCccEeCCCCCcccHhhHHHHHHh
Q 019461          127 IDIEHAKCCICLNIW----HDVVTVAPCLHNFCNGCFSEWLRR  165 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~----~~Pv~l~pCgH~FC~~Cl~~~~~~  165 (340)
                      .+.+.|.|+||.+.|    ..|+.+ -|||+.|+.|++...+.
T Consensus         7 ~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~   48 (861)
T KOG3161|consen    7 KWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA   48 (861)
T ss_pred             hhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc
Confidence            345678999998887    479999 99999999999876654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=88.68  E-value=0.73  Score=42.83  Aligned_cols=50  Identities=20%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             ccCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+.|||....|.   .-+.+-||||.|+..++.+.- ..      ..||+|-.++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~------~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS------KKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc------ccccccCCcccc
Confidence            356799999999884   345566999999999999873 22      479999998876

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.14  E-value=0.58  Score=32.06  Aligned_cols=48  Identities=21%  Similarity=0.441  Sum_probs=25.5

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA  180 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~  180 (340)
                      .|.|||....+.-|+....|.|.-|.+ +..++.... ..+...||.|.+
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~-~~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQ-RTPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHH-HS---B-TTT--
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhh-ccCCeECcCCcC
Confidence            378999999999999998999997754 333443221 123488999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=86.64  E-value=0.51  Score=52.58  Aligned_cols=55  Identities=20%  Similarity=0.402  Sum_probs=37.8

Q ss_pred             CCceecccccc--ccCccEeCCCCCcccHhhHHHHHHhccCCC----CCcCCCCCCccccc
Q 019461          130 EHAKCCICLNI--WHDVVTVAPCLHNFCNGCFSEWLRRSQEKR----STVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~--~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~----~~~~CP~Cr~~~~~  184 (340)
                      .+-.|-||+..  -..|..-+.|+|.|...|..+.+.+.-...    +-..||.|..++..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            45578899863  234544449999999999988776543211    13589999887765

>PHA03096 p28-like protein; Provisional

Probab=85.53  E-value=0.98  Score=42.53  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             ceeccccccccC-c------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461          132 AKCCICLNIWHD-V------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV  182 (340)
Q Consensus       132 l~C~IC~~~~~~-P------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~  182 (340)
                      -.|.||++...+ +      =.|..|-|.||..|+..|............||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence            689999986532 1      12226999999999999988654322233455554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.55  E-value=0.99  Score=47.84  Aligned_cols=42  Identities=21%  Similarity=0.516  Sum_probs=35.5

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV  181 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~  181 (340)
                      .-.|..|.-.+.-|++-..|||+|...|+.+         +...||.|+..
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~---------~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED---------KEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhcc---------CcccCCccchh
Confidence            3599999999999988889999999999982         13589999763

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.58  E-value=2.5  Score=38.07  Aligned_cols=54  Identities=20%  Similarity=0.426  Sum_probs=40.9

Q ss_pred             CCceecccccccc--CccEeCCCCCcccHhhHHHHHHhccC--CCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQE--KRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~~~~  184 (340)
                      ..-.|.+|...+.  +-+.| -|.|.|..+|+.+|..+-..  ....+.||.|..++..
T Consensus        49 Y~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            4568999999874  56777 89999999999999865321  1235789999877654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=82.34  E-value=0.83  Score=43.31  Aligned_cols=47  Identities=17%  Similarity=0.392  Sum_probs=38.8

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV  182 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~  182 (340)
                      +.-.||||+.--.+|..+.--|-.||..|+..++.+.+      .||+-..+.
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~------~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG------HCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC------CCCccCCcc
Confidence            56689999999999988844599999999999998654      899765443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=82.29  E-value=0.54  Score=36.95  Aligned_cols=32  Identities=31%  Similarity=0.610  Sum_probs=26.0

Q ss_pred             cCCceecccccccc-CccEeCCCCCcccHhhHH
Q 019461          129 IEHAKCCICLNIWH-DVVTVAPCLHNFCNGCFS  160 (340)
Q Consensus       129 ~e~l~C~IC~~~~~-~Pv~l~pCgH~FC~~Cl~  160 (340)
                      .+.-.|++|...+. .+....||||.|...|+.
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            45667999999876 556667999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.49  E-value=1.1  Score=43.55  Aligned_cols=48  Identities=13%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             CCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461          130 EHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV  181 (340)
Q Consensus       130 e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~  181 (340)
                      .-+.|||=++.-.   -|+.| .|||..++.-+.+..+.+.   ..+.||.|-..
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~---~sfKCPYCP~e  383 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGS---QSFKCPYCPVE  383 (394)
T ss_pred             ceeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCC---eeeeCCCCCcc
Confidence            4579999887664   47787 9999999999988776542   35899999654

>PF12773 DZR: Double zinc ribbon

Probab=81.23  E-value=1.7  Score=29.41  Aligned_cols=18  Identities=33%  Similarity=1.047  Sum_probs=8.7

Q ss_pred             CccccCCCCCCCCCCCcccccc
Q 019461          274 CQGCGGMMPSRNDSVPQHCLGC  295 (340)
Q Consensus       274 C~~C~~~~p~r~~~~~~~C~~C  295 (340)
                      |..|....+...    .||..|
T Consensus        32 C~~Cg~~~~~~~----~fC~~C   49 (50)
T PF12773_consen   32 CPNCGAENPPNA----KFCPNC   49 (50)
T ss_pred             CcCCcCCCcCCc----CccCcc
Confidence            555555533322    255554

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=81.02  E-value=1.2  Score=42.10  Aligned_cols=51  Identities=24%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             CCceeccccccc-------------cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIW-------------HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~-------------~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .--.||+=++.|             +.|.+-+.|||.--.   ..|-.+.+.....-.||.||..-.
T Consensus       289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~gp  352 (429)
T KOG3842|consen  289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVGP  352 (429)
T ss_pred             cCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeeecc
Confidence            445788877765             245444589996543   245444333334568999987543

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=80.06  E-value=1.6  Score=48.42  Aligned_cols=49  Identities=31%  Similarity=0.743  Sum_probs=36.1

Q ss_pred             CCCCCCCCCCCCcccCCCCCcc----cCccccCCCCCCCCCCCccccccccccc
Q 019461          251 LPCPQCGTEINGFHCNQTTVHL----QCQGCGGMMPSRNDSVPQHCLGCDRAFC  300 (340)
Q Consensus       251 ~~C~~C~~~~~~~~C~~~~~hl----~C~~C~~~~p~r~~~~~~~C~~C~~~~C  300 (340)
                      +.|+.|.......+||.|+.++    .|..|+..++..... .-+|.-|+.+.-
T Consensus       668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~-a~~CP~CGtplv  720 (1337)
T PRK14714        668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESG-RVECPRCDVELT  720 (1337)
T ss_pred             EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccc-cccCCCCCCccc
Confidence            6899999877778999999775    599998876654333 447877765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
2xoc_A	261	E3 ubiquitin-protein ligase CHFR; zinc-binding, po	2e-14
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-11
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-10
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-10
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	5e-10
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	7e-10
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	8e-09
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	7e-08
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	9e-08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	5e-07
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	4e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-06
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	5e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	1e-05
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-05
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	6e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	7e-05
2ect_A	78	Ring finger protein 126; metal binding protein, st	9e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	3e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-04

>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose) mitosis, antephase checkpoint, cell cycle; HET: PGE ADP ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A Length = 261

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 22/144 (15%)

Query: 211 EVALLDSYAY-IKSNLVIRNGKKHRRKRAHSPIDEESDSIELPCPQ-----------CGT 258
           E++ +DS +  I    V+       R++A  P    +   E   PQ             T
Sbjct: 7   ELSDVDSESSDISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSLTT 66

Query: 259 EINGFHCNQTTVHLQCQGCGGMMPSR-------NDSVPQHCLGCDRAFCGAYWHAQMVAR 311
            +  + C     H  C  C   MP R           PQ C  C + FC  YW      R
Sbjct: 67  AVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCT---R 123

Query: 312 SDSQPMCSHETFKPISERTSLGFH 335
           +      +      + ++   G  
Sbjct: 124 TGCYGCLAPFCELNLGDKCLDGVL 147

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           +  +C IC   ++  + +  C HN+C+ C  ++L    +      CP C   V    +  
Sbjct: 21  DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ------CPTCCVTVTEPDLKN 74

Query: 188 NHYLHNIEQSILQAHSSLRRSDEE 211
           N  L  + +S+  A + L +   E
Sbjct: 75  NRILDELVKSLNFARNHLLQFALE 98

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
            H  C +C   + D  T+  CLH+FC  C   +L  S+       CP C   V       
Sbjct: 14  PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKY------CPICDVQVHKTRPLL 67

Query: 190 YL---HNIEQSILQAHSSLRRSDEE 211
            +     ++  + +    L +++ +
Sbjct: 68  NIRSDKTLQDIVYKLVPGLFKNEMK 92

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 116 QESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLC 175
           Q+         +     +C IC   + + VT+  C H+FC+ C +EW++R  E      C
Sbjct: 49  QKEEVLSHMNDVLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRKIE------C 101

Query: 176 PHCRAVVQFVGRNHYLHNIEQSILQAHSSLRRSDEEVALLDS 217
           P CR  ++    +  L N    ++   SS  +    V + + 
Sbjct: 102 PICRKDIKSKTYSLVLDNCINKMVNNLSSEVKERRIVLIRER 143

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 116 QESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLC 175
               ++Q   SI  E  +C IC+    D      C    C  C   WL   + +     C
Sbjct: 8   HSHMDEQSVESIA-EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQ-----C 61

Query: 176 PHCRAVVQ 183
           PHCRA +Q
Sbjct: 62  PHCRAPLQ 69

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           +  +C  C NI  + V +  C H FC+ C S+ +           CP C        +  
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQDLKI 72

Query: 188 NHYLHNIEQSILQAHSSLRRSDEE 211
           N  L ++ Q   +  + L  ++  
Sbjct: 73  NRQLDSMIQLCSKLRNLLHDNELS 96

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
            +  C IC     D  T+  CLH FC  C       S        CP C  VV 
Sbjct: 14  PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNR------CPKCNIVVH 61

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           E   C ICL +    +++  C H+FC  C +   ++S   +    CP CR   Q   +  
Sbjct: 18  EEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76

Query: 188 NHYLHNI 194
           N ++ NI
Sbjct: 77  NRHVANI 83

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           E   C ICL +  + V+   C H+FC  C +     ++       CP CR    F  +  
Sbjct: 18  EEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76

Query: 188 NHYLHNI 194
           N ++ NI
Sbjct: 77  NLHVANI 83

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVG 186
           +     +C ICL    +     PCLH FC  C + W+R++        CP C+  V+ V 
Sbjct: 1   MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT------CPLCKVPVESVV 54

Query: 187 RN 188
             
Sbjct: 55  HT 56

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           +  +C ICL +  + V+   C H FC  C  + L + +       CP C+  +    +  
Sbjct: 20  KILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQ---CPLCKNDITKRSLQE 75

Query: 188 NHYLHNIEQSILQAHSSLRRSDEE 211
           +     + + +L+   + +     
Sbjct: 76  STRFSQLVEELLKIICAFQLDTGL 99

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 116 QESSNQQLEISIDI----EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRS 171
           QE+    LEI +          C ICL++  + +T   CLH FC  C    LR   ++  
Sbjct: 35  QEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE-- 92

Query: 172 TVLCPHCRAVVQFVG---RNHYLHNIEQSILQAHSSLRRSDEEV 212
              CP CR  +        +     +   I  +        E V
Sbjct: 93  ---CPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERV 133

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGR 187
            +   +C IC+ I  + VT+ PC H  C  CF   + ++        CP CR  V    R
Sbjct: 12  SLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLC-----CPFCRRRVSSWTR 65

Query: 188 ---------NHYLHNIEQSILQAHSSLRRSDEE 211
                    N  L  I Q        LR S +E
Sbjct: 66  YHTRRNSLVNVELWTIIQKHYPRECKLRASGQE 98

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVG 186
           E  +C  C  +    +T   C HN C  C     R          CP CR  +     + 
Sbjct: 51  ETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFS-----CPACRYDLGRSYAMQ 104

Query: 187 RNHYLHNIEQSILQAHSSLR 206
            N  L  +   +   + + R
Sbjct: 105 VNQPLQTVLNQLFPGYGNGR 124

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           +   C IC +I  D V +  C +++C+ C    L  S E      CP C     
Sbjct: 14  DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT----CPTCHQNDV 63

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVG 186
           +   C  C  + +  VT   C HN C  C     +          CP CR  +     + 
Sbjct: 77  QSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFS-----CPACRHDLGQNYIMI 130

Query: 187 RNHYLHNIEQSILQAHSSLR 206
            N  L  +       +S  R
Sbjct: 131 PNEILQTLLDLFFPGYSKGR 150

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVL-CPHCRAVVQF--VG 186
           E   C ICL +  + +++  C H+ C  C +   + +         CP C     F  + 
Sbjct: 11  EEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69

Query: 187 RNHYLHNI 194
            N +L NI
Sbjct: 70  ANQHLANI 77

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.2 bits (127), Expect = 5e-08
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 117 ESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP 176
                +L   +      C IC     DV  + PC H  C  C + W     +      CP
Sbjct: 318 TQEQYELYCEMGSTFQLCKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQG-----CP 371

Query: 177 HCRAVVQ 183
            CR  ++
Sbjct: 372 FCRCEIK 378

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGR-- 187
           +   C IC +I  D V +  C +++C+ C    L  S E      CP C      V    
Sbjct: 12  DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHT----CPTCHQ--NDVSPDA 65

Query: 188 ---NHYLHNIEQSILQAHSSLRRSDEE 211
              N +L     +        +R  ++
Sbjct: 66  LIANKFLRQAVNNFKNETGYTKRLRKQ 92

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 8/54 (14%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           +  +CCIC++   D++   PC H+FC  C  +W  R +       CP CR  + 
Sbjct: 14  DEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRN------CPICRLQMT 59

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184
           E   C ICL+I    VT+  C HNFC  C ++    S        CP C+  V+ 
Sbjct: 19  EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFK---CPLCKTSVRK 69

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185
           +C IC   + + V V  C H FC  C  E  R +        C  C      +
Sbjct: 17  RCFICRQAFQNPV-VTKCRHYFCESCALEHFRATPR------CYICDQPTGGI 62

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 118 SSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPH 177
           SS      +  +   +C ICL      V++ PC H FC  C        +       C  
Sbjct: 2   SSGSSGNTAPSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKR------CAL 54

Query: 178 CRAVV 182
           CR  +
Sbjct: 55  CRQEI 59

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 12/57 (21%)

Query: 133 KCCICLNIWHD------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
            C IC++ + +      ++    C H FC+ C  + L+ +        CP CR  + 
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT------CPTCRKKIN 55

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 12/57 (21%)

Query: 133 KCCICLNIWHD------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
            C IC++ + +      ++    C H FC+ C  + L+ +        CP CR  + 
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT------CPTCRKKIN 62

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 12/55 (21%)

Query: 134 CCICLNIWHD------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
           C IC++ + +      ++    C H FC+ C  + L+ +        CP CR  +
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT------CPTCRKKI 66

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           KC  C  +         C H FC  C +  L  S  K     C  C+  + 
Sbjct: 17  KCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPK-----CTACQESIV 61

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178
             A C +CL    + V +  C HNFC  C + W    +       CP C
Sbjct: 14  VEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFP---CPVC 58

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           C IC ++     +   C       C +++ + + E R    CPHC  
Sbjct: 18  CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR----CPHCND 60

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           + +  +C  C         + PCLH  C+GC          + S + CP C+A   
Sbjct: 3   EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCL---------EASGMQCPICQAPWP 48

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178
           E   C ICL+I    VT+  C HNFC  C ++    S        CP C
Sbjct: 19  EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFK---CPLC 63

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 134 CCICLNIWHDVVT---VAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           C IC+  + +      +  C H  C  C  + L  S    + V CP C  + +
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITR 67

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 131 HAKCCICLNIWHD---VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
            + C ICL   H    V  V PC H     C+ E L+          CP C  
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY------RCPLCSG 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 49/396 (12%), Positives = 116/396 (29%), Gaps = 114/396 (28%)

Query: 2   AEVGECSASK-----PSREIWAKLEPSDSRFADVDISSNEVVICSEITSSSSDKHEWCKI 56
            +V  C + K       +  W  L+  +S    +++      +  +I  + + + +    
Sbjct: 168 LDV--CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSN 222

Query: 57  TRNSDLHSAK------MQNKS-SNAILV-DDTMVQNEEVV---DIKCGTEIIPGPDREV- 104
            +   +HS +      +++K   N +LV  +  VQN +     ++ C   ++    ++V 
Sbjct: 223 IK-LRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI-LLTTRFKQVT 278

Query: 105 -YLNF-RFKVVPVQESSN-----QQLEISIDIEHAKC--CICLNIWHDVVTVAPCLHNFC 155
            +L+      + +   S      +   +       K   C   ++  +V+T  P   +  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 156 NGCFSEWLRRSQEKRSTVLCPHCRAVVQFVG-------RNHYLH--------NIEQSILQ 200
                + L      +          +   +        R  +          +I   +L 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL- 392

Query: 201 AHSSL-RRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIELPCPQCGTE 259
             S +     +   ++      K +LV +  K+       S   E    +E         
Sbjct: 393 --SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLE--------- 440

Query: 260 INGFHCNQTTVH---------LQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYW------ 304
                 N+  +H          +      ++P   D                Y+      
Sbjct: 441 ------NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---------------YFYSHIGH 479

Query: 305 HAQMVARSDSQPMCSHETFKPISERTSLGFHFLRTK 340
           H + +   +   +     F+ +     L F FL  K
Sbjct: 480 HLKNIEHPERMTL-----FRMVF----LDFRFLEQK 506

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 39/244 (15%), Positives = 76/244 (31%), Gaps = 76/244 (31%)

Query: 20  LEPSDSR-----FA----DVDISSN--------------EVVICSEITSSSSDKHEWCKI 56
           LEP++ R      +       I +                VV+      S  +K    + 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKES 424

Query: 57  TRNSDLHS--AKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGPD------------- 101
           T    + S   +++ K  N   +  ++V +  +       ++IP                
Sbjct: 425 T--ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 102 -----------REVYLNFRF---KVVPVQESSNQQ---LEISIDIEHAKCCICLNIWHDV 144
                      R V+L+FRF   K+     + N     L     ++  K  IC N     
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 145 VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSIL-QAHS 203
             V   L  F        L + +E    +   +   +++       L   +++I  +AH 
Sbjct: 543 RLVNAILD-F--------LPKIEEN--LICSKYTD-LLRIA-----LMAEDEAIFEEAHK 585

Query: 204 SLRR 207
            ++R
Sbjct: 586 QVQR 589

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179
              +C ICL    + V   PC H FC  C  + +R +  K     CP   
Sbjct: 17  SKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK-----CPVDN 60

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
            H  C +CL  +   D + + PC H F   C  +WL   +      +CP C   V
Sbjct: 14  LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK------VCPLCNMPV 62

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           +   C IC + +   DV T  PC H F   C S WL    +K  T  CP CR 
Sbjct: 39  QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL----QKSGT--CPVCRC 85

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 100 PDREVYLN----FRFKVVPVQESSNQQLEISIDIEHAKCCICLNIWHD-------VVTVA 148
            +  ++ N    F     P+ + S+       D E  +C IC     D           A
Sbjct: 273 SEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNA 332

Query: 149 PCLHNFCNGCFSEWLRRSQEKRSTV-----LCPHCRA 180
            C+      C  EW +   + ++ +      CP C+A
Sbjct: 333 KCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV---QFV 185
           ++   C IC +I  D V    C H FC  C    L+          CP CR         
Sbjct: 21  VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSY-----CPSCRYPCFPTDLE 74

Query: 186 GRNHYLHNIEQSI 198
                  NI  S+
Sbjct: 75  SPVKSFLNILNSL 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
              +C +C   +   + V   PC H F + C   WL    E+  +  CP CR  +
Sbjct: 14  SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL----EQHDS--CPVCRKSL 62

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 8/103 (7%)

Query: 116 QESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLC 175
             +    L+I        C I    +   +    C H F       +L+    +     C
Sbjct: 166 NPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRD----C 221

Query: 176 PH--CRAVVQF--VGRNHYLHNIEQSILQAHSSLRRSDEEVAL 214
           P   C  VV      R+  +    +      S  +      A+
Sbjct: 222 PQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQDKRSSQAI 264

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179
               C  C N+       A C H +C+ C +  L    +      C  C 
Sbjct: 30  AKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQN-----CAACV 73

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 18/66 (27%)

Query: 134 CCICLNIWHD-----------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP 176
           C IC+                      V  +  C H F   C          K  ++ CP
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCP 86

Query: 177 HCRAVV 182
            C+ + 
Sbjct: 87  SCKTIY 92

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
              +C ICL    + V   PC H FC  C  + +R +  K     CP    ++    +  
Sbjct: 17  SKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK-----CPVDNEILLENQLFP 70

Query: 188 NHYLHNIEQSI-LQAHSSLRRSDEEVALLDSYAYIKSNLVIR---NGKKHRRKRAHSPID 243
           +++      S+ ++  +       E+  L+ +       ++      +  ++   +  I 
Sbjct: 71  DNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHIL 130

Query: 244 EESDSIELPCPQCGTEI 260
           ++    ++ C  C   +
Sbjct: 131 KDCPRRQVSCDNCAASM 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1gxc_A	149	CHK2, CDS1, serine/threonine-protein kinase CHK2;	99.8
1lgp_A	116	Cell cycle checkpoint protein CHFR; FHA, tungstate	99.75
1g6g_A	127	Protein kinase RAD53; beta-sandwich, phosphopeptid	99.7
2jqj_A	151	DNA damage response protein kinase DUN1; protein/p	99.69
3va4_A	132	Mediator of DNA damage checkpoint protein 1; cell	99.62
1uht_A	118	Expressed protein; FHA domain, beta-sandwich, anti	99.61
4h87_A	130	Kanadaptin; FHA domain of PF00498, mRNA processing	99.61
1dmz_A	158	Protein (protein kinase SPK1); beta-sandwich, anti	99.59
2pie_A	138	E3 ubiquitin-protein ligase RNF8; FHA domain, comp	99.58
1qu5_A	182	Protein kinase SPK1; FHA, RAD53, transferase; NMR	99.58
1g3g_A	164	Protien kinase SPK1; FHA domain, RAD53, phosphopep	99.58
3hx1_A	131	SLR1951 protein; P74513_SYNY3, adenylate cyclase-l	99.58
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.55
2jpe_A	140	Nuclear inhibitor of protein phosphatase 1; FHA do	99.53
3po8_A	100	RV0020C protein, putative uncharacterized protein	99.53
1mzk_A	139	Kinase associated protein phosphatase; beta sandwi	99.53
2csw_A	145	Ubiquitin ligase protein RNF8; 11-stranded beta sa	99.53
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.52
2xt9_B	115	Putative signal transduction protein GARA; lyase-s	99.51
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	99.49
2kb3_A	143	Oxoglutarate dehydrogenase inhibitor; forkhead-ass	99.48
1wln_A	120	Afadin; beta sandwich, FHA domain, structural geno	99.48
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.48
1r21_A	128	Antigen KI-67; beta sandwich, cell cycle; NMR {Hom	99.47
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.46
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.45
2kfu_A	162	RV1827 PThr 22; FHA domain, phosphorylation, intra	99.45
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.45
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.44
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.44
3gqs_A	106	Adenylate cyclase-like protein; FHA domain, struct	99.44
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.44
2brf_A	110	Bifunctional polynucleotide phosphatase/kinase; hy	99.43
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.43
1yj5_C	143	5' polynucleotide kinase-3' phosphatase FHA domai;	99.43
3els_A	158	PRE-mRNA leakage protein 1; intrinsically unstruct	99.4
3kt9_A	102	Aprataxin; FHA domain, beta sandwich, beta sheet,	99.39
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.39
1ujx_A	119	Polynucleotide kinase 3'-phosphatase; DNA repair,	99.39
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.38
3elv_A	205	PRE-mRNA leakage protein 1; intrinsically unstruct	99.37
3fm8_A	124	Kinesin-like protein KIF13B; kinesin, GAP, GTPase	99.37
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.36
2xoc_A	261	E3 ubiquitin-protein ligase CHFR; zinc-binding, po	99.36
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.35
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.33
4ejq_A	154	Kinesin-like protein KIF1A; homodimer, FHA domain,	99.33
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	99.31
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.3
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.3
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.29
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.29
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.28
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.28
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.26
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.24
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.23
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.22
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.22
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.22
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.2
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.16
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.15
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.15
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.13
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.11
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.08
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.08
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.07
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.03
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.03
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.03
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.01
3huf_A	325	DNA repair and telomere maintenance protein NBS1;	99.01
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.0
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.99
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.97
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.97
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.93
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.93
3uv0_A	102	Mutator 2, isoform B; FHA, protein binding, dimeri	98.92
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.92
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.89
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.82
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.82
4egx_A	184	Kinesin-like protein KIF1A; FHA domain, transport	98.8
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.75
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.74
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.71
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.7
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.65
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.62
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.59
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.55
4a0e_A	123	YSCD, type III secretion protein; transport protei	98.46
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.44
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.43
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.4
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.35
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.3
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.76
1wv3_A	238	Similar to DNA segregation ATPase and related prot	97.71
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.68
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.46
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.42
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.89
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.45
3nw0_A	238	Non-structural maintenance of chromosomes element	92.91
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	87.91
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	86.32
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	85.37
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	85.11
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	83.43
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	80.1

>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2

Probab=99.80  E-value=1.2e-19  Score=153.44  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             CCCccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-c---------cccceEEEEEeCCC---CeEEEEeccCC
Q 019461           11 KPSREIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-S---------DKHEWCKITRNSDL---HSAKMQNKSSN   73 (340)
Q Consensus        11 ~~~~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~---------vS~~H~~i~~~~~~---~~~~i~D~StN   73 (340)
                      ++.+..||+|+++.+..+.+.|.++.++|||    ++.+++ .         |||.||+|.++.+.   ..|+|+|+|+|
T Consensus        24 ~~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StN  103 (149)
T 1gxc_A           24 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN  103 (149)
T ss_dssp             -----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSS
T ss_pred             CCCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCC
Confidence            4455689999999988899999999999999    677776 3         99999999998652   25999999999


Q ss_pred             ceEeccEecCCCceeeccCCCeeccCCCCcceecccccccccc
Q 019461           74 AILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQ  116 (340)
Q Consensus        74 gt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i~s~~  116 (340)
                      ||||||++|.+++.+.|.+||+|.+|..  ....|.|..+...
T Consensus       104 GT~VNg~~i~~~~~~~L~~GD~I~lG~~--~~~~f~f~d~~~~  144 (149)
T 1gxc_A          104 GTFVNTELVGKGKRRPLNNNSEIALSLS--RNKVFVFFDLTVD  144 (149)
T ss_dssp             CEEETTEECCTTCEEECCTTEEEEESST--TCEEEEEEETTCC
T ss_pred             CeEECCEECCCCCeEECCCCCEEEECCC--CCeEEEEEECCcc
Confidence            9999999999999999999999999984  3566777655543

>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A

Probab=99.75  E-value=2.5e-18  Score=139.23  Aligned_cols=101  Identities=12%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             cccEEEEeCCC--CCceeEeeCCceEEec----ccccCC--ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCc
Q 019461           15 EIWAKLEPSDS--RFADVDISSNEVVICS----EITSSS--SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEE   86 (340)
Q Consensus        15 ~~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~--~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~   86 (340)
                      ++||+|+++++  ....+.|.++.++|||    ++.+++  .||+.||+|.++..+..|+|+|.|+|||||||+++.++.
T Consensus         2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~l~~~~   81 (116)
T 1lgp_A            2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQ   81 (116)
T ss_dssp             CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSS
T ss_pred             CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEEcCCCC
Confidence            57999999875  4567899999999999    677764  899999999997434469999999999999999999998


Q ss_pred             eeeccCCCeeccCCCCc---ceeccccccccc
Q 019461           87 VVDIKCGTEIIPGPDRE---VYLNFRFKVVPV  115 (340)
Q Consensus        87 ~~~l~~gd~I~lg~~~~---~~~~y~f~i~s~  115 (340)
                      .+.|.+||+|.+|....   ..+.|.|.....
T Consensus        82 ~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~  113 (116)
T 1lgp_A           82 TCPLQTGDVIYLVYRKNEPEHNVAYLYESLSE  113 (116)
T ss_dssp             CCCCCTTCEEEEECCSSCGGGCEEEECCCSCC
T ss_pred             cEECCCCCEEEEeccCCCCCceEEEEEEcccc
Confidence            99999999999997532   256777776654

>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2

Probab=99.70  E-value=5.7e-17  Score=133.35  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             cccEEEEeCCCCCceeEeeCC-------------ceEEec----ccccCC--ccccceEEEEEeCCCCeEEEEeccCCce
Q 019461           15 EIWAKLEPSDSRFADVDISSN-------------EVVICS----EITSSS--SDKHEWCKITRNSDLHSAKMQNKSSNAI   75 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~~~-------------~~~iGr----~~~~~~--~vS~~H~~i~~~~~~~~~~i~D~StNgt   75 (340)
                      .+|++|++..+.++.+.|..+             .++|||    ++.+++  .||+.||+|.++.+ ..|+|+|+|+|||
T Consensus         3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~-g~~~l~DlS~NGT   81 (127)
T 1g6g_A            3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGED-GNLLLNDISTNGT   81 (127)
T ss_dssp             EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTT-SCEEEEECCSSCC
T ss_pred             ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCC-CcEEEEECCcCCe
Confidence            589999999999999998777             899999    677877  59999999999522 2599999999999


Q ss_pred             EeccEecCCCceeeccCCCeeccCCCC-cceecccccccc
Q 019461           76 LVDDTMVQNEEVVDIKCGTEIIPGPDR-EVYLNFRFKVVP  114 (340)
Q Consensus        76 ~vng~~i~~~~~~~l~~gd~I~lg~~~-~~~~~y~f~i~s  114 (340)
                      ||||+++..++.+.|.+||+|.+|... ...+.|.|....
T Consensus        82 ~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~~  121 (127)
T 1g6g_A           82 WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND  121 (127)
T ss_dssp             EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEECH
T ss_pred             EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeCc
Confidence            999999999989999999999999864 345566666543

>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*

Probab=99.69  E-value=6.4e-17  Score=137.01  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             CCCccccEEEEeCCC-CCceeEeeC-CceEEec----ccccCC-ccccceEEEEEe----C--CCCeEEEEeccCCceEe
Q 019461           11 KPSREIWAKLEPSDS-RFADVDISS-NEVVICS----EITSSS-SDKHEWCKITRN----S--DLHSAKMQNKSSNAILV   77 (340)
Q Consensus        11 ~~~~~~~~~L~~~~~-~~~~~~l~~-~~~~iGr----~~~~~~-~vS~~H~~i~~~----~--~~~~~~i~D~StNgt~v   77 (340)
                      ++....||+|+.+.. ....+.|.. +.++|||    +|.+++ .||+.||+|.+.    +  ++..|+|+|+|+|||||
T Consensus        12 ~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~V   91 (151)
T 2jqj_A           12 SSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFI   91 (151)
T ss_dssp             SSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEE
T ss_pred             CCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEE
Confidence            345569999998765 455678874 8899999    688888 999999999992    1  23459999999999999


Q ss_pred             ccEecCCCceeeccCCCeeccCC
Q 019461           78 DDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        78 ng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      ||++|..+ .+.|.+||+|.+|.
T Consensus        92 Ng~~i~~~-~~~L~~GD~I~lG~  113 (151)
T 2jqj_A           92 NGNRLVKK-DYILKNGDRIVFGK  113 (151)
T ss_dssp             TTEECCSS-CEEECSSEEEEETT
T ss_pred             CCEEcCCC-ceECCCCCEEEECC
Confidence            99999988 89999999999998

>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B

Probab=99.62  E-value=8.7e-16  Score=126.98  Aligned_cols=88  Identities=11%  Similarity=0.003  Sum_probs=76.1

Q ss_pred             CccccEEEEeCCCCC---ceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEe--
Q 019461           13 SREIWAKLEPSDSRF---ADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTM--   81 (340)
Q Consensus        13 ~~~~~~~L~~~~~~~---~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~--   81 (340)
                      ..+.||+|+-+.+..   ..+.|..+.++|||    +|.+++ .||+.||+|.++.++..|+|+|+ |+|||||||++  
T Consensus        20 ~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i~   99 (132)
T 3va4_A           20 HMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRV   99 (132)
T ss_dssp             CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTEE
T ss_pred             cCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEcc
Confidence            446899999877644   56789999999999    688888 99999999999754446999999 99999999998  


Q ss_pred             cCCCceeeccCCCeeccCC
Q 019461           82 VQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        82 i~~~~~~~l~~gd~I~lg~  100 (340)
                      +..+..+.|++||+|.+|.
T Consensus       100 l~~~~~~~L~~GD~I~lG~  118 (132)
T 3va4_A          100 LPPGVSHRLRDQELILFAD  118 (132)
T ss_dssp             ECTTCCEECCTTCEEEETT
T ss_pred             cCCCCEEECCCCCEEEECC
Confidence            6777889999999999997

>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2

Probab=99.61  E-value=2.3e-15  Score=122.06  Aligned_cols=87  Identities=18%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             CccccEEEEeCCCC--CceeEeeC-CceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEec
Q 019461           13 SREIWAKLEPSDSR--FADVDISS-NEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMV   82 (340)
Q Consensus        13 ~~~~~~~L~~~~~~--~~~~~l~~-~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i   82 (340)
                      .+.++.+|+...+.  ...+.|.. ..++|||     ++.+++ .||+.||+|.++++.  |+|+|+ |+|||||||+++
T Consensus         8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGT~vng~~l   85 (118)
T 1uht_A            8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGN--WVIQDLGSSNGTLLNSNAL   85 (118)
T ss_dssp             CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSSS--EEEECCCCSSCCEESSSBC
T ss_pred             CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEECCE--EEEEECCCCCCeEECCEEC
Confidence            44578888887653  34667876 5799999     467777 999999999998665  999999 999999999999


Q ss_pred             CCCceeeccCCCeeccCCC
Q 019461           83 QNEEVVDIKCGTEIIPGPD  101 (340)
Q Consensus        83 ~~~~~~~l~~gd~I~lg~~  101 (340)
                      ..+..+.|.+||+|.+|..
T Consensus        86 ~~~~~~~L~~gd~i~lG~~  104 (118)
T 1uht_A           86 DPETSVNLGDGDVIKLGEY  104 (118)
T ss_dssp             CTTCEEECCTTEEEEETTT
T ss_pred             CCCCeEEcCCCCEEEECCe
Confidence            9988999999999999984

>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=124.74  Aligned_cols=83  Identities=10%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             EEEeCCCC--CceeEeeCCc-eEEec----ccccCC-ccccceEEEEEe---------CCCCeEEEEec-cCCceEeccE
Q 019461           19 KLEPSDSR--FADVDISSNE-VVICS----EITSSS-SDKHEWCKITRN---------SDLHSAKMQNK-SSNAILVDDT   80 (340)
Q Consensus        19 ~L~~~~~~--~~~~~l~~~~-~~iGr----~~~~~~-~vS~~H~~i~~~---------~~~~~~~i~D~-StNgt~vng~   80 (340)
                      +|..+.++  ...+.|.+.. ++|||    ||.+++ .|||.||.|.+.         .....|+|+|| |+|||||||+
T Consensus        22 ~L~v~k~g~~~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~  101 (130)
T 4h87_A           22 SLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKT  101 (130)
T ss_dssp             EEEEEETTEEEEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTE
T ss_pred             EEEEEECCeeeeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCE
Confidence            45444332  2345675544 79999    788888 999999999653         22335999999 9999999999


Q ss_pred             ecCCCceeeccCCCeeccCCC
Q 019461           81 MVQNEEVVDIKCGTEIIPGPD  101 (340)
Q Consensus        81 ~i~~~~~~~l~~gd~I~lg~~  101 (340)
                      +|..+..+.|++||+|.+|..
T Consensus       102 ri~~~~~~~L~~GD~I~~G~s  122 (130)
T 4h87_A          102 RIPPRTYCRVHVGHVVRFGGS  122 (130)
T ss_dssp             ECCTTCCEECCTTCEEEETTC
T ss_pred             ECCCCceeECCCCCEEEECCc
Confidence            999998999999999999974

>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*

Probab=99.59  E-value=3.7e-15  Score=127.04  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             cccEEEEeCCCC--CceeEeeCCc--eEEec----ccccCC-ccccceEEEEEeCCC-------------CeEEEEeccC
Q 019461           15 EIWAKLEPSDSR--FADVDISSNE--VVICS----EITSSS-SDKHEWCKITRNSDL-------------HSAKMQNKSS   72 (340)
Q Consensus        15 ~~~~~L~~~~~~--~~~~~l~~~~--~~iGr----~~~~~~-~vS~~H~~i~~~~~~-------------~~~~i~D~St   72 (340)
                      ..|-.|.|....  ...+.|..+.  ++|||    ++.+++ .||+.||+|.++...             ..|+|+|+|+
T Consensus         3 g~~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlSt   82 (158)
T 1dmz_A            3 GRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGT   82 (158)
T ss_dssp             SCCEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECST
T ss_pred             ceEEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCc
Confidence            357788887763  3557887766  99999    688888 999999999987510             4699999999


Q ss_pred             CceEeccEecCCCceeeccCCCeeccCCCCcceecccc
Q 019461           73 NAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRF  110 (340)
Q Consensus        73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f  110 (340)
                      |||||||++|.++..+.|.+||+|.++.+..+...+.|
T Consensus        83 NGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f  120 (158)
T 1dmz_A           83 NVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGF  120 (158)
T ss_dssp             TCCEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCE
T ss_pred             CCeEECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEE
Confidence            99999999999999999999999999544333333333

>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2

Probab=99.58  E-value=6.1e-15  Score=122.93  Aligned_cols=97  Identities=16%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             cccEEEEeCCCCCceeEee-CCceEEec----ccccCC-c----cccceEEEEEeCCCCeEEEEec-cCCceEeccEecC
Q 019461           15 EIWAKLEPSDSRFADVDIS-SNEVVICS----EITSSS-S----DKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQ   83 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~-~~~~~iGr----~~~~~~-~----vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~   83 (340)
                      ..| .|+........+.|. +..++|||    ++.+++ .    ||+.||+|.++.+ ..|+|+|+ |+|||||||+++.
T Consensus         8 ~~w-~l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S~NGT~vNg~~l~   85 (138)
T 2pie_A            8 RSW-CLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKSLNGVWLNRARLE   85 (138)
T ss_dssp             EEE-EEEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTT-SCEEEEECSCSSCEEETTEECC
T ss_pred             ccE-EEEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCC-CcEEEEECCCCCCeEECCEEcC
Confidence            467 477777666778886 67899999    678887 6    9999999998432 25999999 9999999999999


Q ss_pred             CCceeeccCCCeeccCCCCc--ceeccccccc
Q 019461           84 NEEVVDIKCGTEIIPGPDRE--VYLNFRFKVV  113 (340)
Q Consensus        84 ~~~~~~l~~gd~I~lg~~~~--~~~~y~f~i~  113 (340)
                      .++.+.|.+||+|.+|....  ....|.|...
T Consensus        86 ~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~  117 (138)
T 2pie_A           86 PLRVYSIHQGDYIQLGVPLENKENAEYEYEVT  117 (138)
T ss_dssp             TTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred             CCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence            99999999999999998532  2345555443

>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2

Probab=99.58  E-value=1.9e-15  Score=131.49  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=73.2

Q ss_pred             ccccEEEEeCCCC--CceeEeeCCc--eEEec----ccccCC-ccccceEEEEEeCC-------------CCeEEEEecc
Q 019461           14 REIWAKLEPSDSR--FADVDISSNE--VVICS----EITSSS-SDKHEWCKITRNSD-------------LHSAKMQNKS   71 (340)
Q Consensus        14 ~~~~~~L~~~~~~--~~~~~l~~~~--~~iGr----~~~~~~-~vS~~H~~i~~~~~-------------~~~~~i~D~S   71 (340)
                      ...|..|.|..+.  ...+.|..+.  ++|||    +|.+++ .||+.||+|.++..             ...|+|+|+|
T Consensus        26 ~g~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlS  105 (182)
T 1qu5_A           26 NGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTG  105 (182)
T ss_dssp             SSCCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCS
T ss_pred             CccEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECC
Confidence            3468888887763  3556887776  99999    688888 99999999998751             0469999999


Q ss_pred             CCceEeccEecCCCceeeccCCCeeccCC
Q 019461           72 SNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      +|||||||++|.++..+.|.+||+|.++.
T Consensus       106 tNGT~VNg~ri~~~~~~~L~~GD~I~l~~  134 (182)
T 1qu5_A          106 TNVSYLNNNRMIQGTKFLLQDGDEIKIIW  134 (182)
T ss_dssp             SSCCEETTEECCSSEEEECCTTBCCEEEE
T ss_pred             cCCeEECCEEcCCCcceEcCCCCEEEEEE
Confidence            99999999999999999999999999943

>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*

Probab=99.58  E-value=8.9e-15  Score=125.43  Aligned_cols=100  Identities=10%  Similarity=0.069  Sum_probs=79.8

Q ss_pred             CccccEEEEeCCCCCcee--EeeCC-----------ceEEec----ccccCC--ccccceEEEEEe-CCCCeEEEEeccC
Q 019461           13 SREIWAKLEPSDSRFADV--DISSN-----------EVVICS----EITSSS--SDKHEWCKITRN-SDLHSAKMQNKSS   72 (340)
Q Consensus        13 ~~~~~~~L~~~~~~~~~~--~l~~~-----------~~~iGr----~~~~~~--~vS~~H~~i~~~-~~~~~~~i~D~St   72 (340)
                      ++..|++|+...+.....  .|..+           .++|||    +|.+++  .||+.||+|.++ ++  .|+|+|+|+
T Consensus        29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g--~~~l~DlS~  106 (164)
T 1g3g_A           29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--NLLLNDIST  106 (164)
T ss_dssp             CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTT--CEEEEECCS
T ss_pred             CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCC--CEEEEECCC
Confidence            445799999988865554  44422           789999    678877  599999999995 44  599999999


Q ss_pred             CceEeccEecCCCceeeccCCCeeccCCCC-cceecccccccc
Q 019461           73 NAILVDDTMVQNEEVVDIKCGTEIIPGPDR-EVYLNFRFKVVP  114 (340)
Q Consensus        73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~~~-~~~~~y~f~i~s  114 (340)
                      |||||||+++..+..+.|.+||+|.+|... ...+.|.|....
T Consensus       107 NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~  149 (164)
T 1g3g_A          107 NGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND  149 (164)
T ss_dssp             SCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECH
T ss_pred             CCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCc
Confidence            999999999999989999999999999853 234566665554

>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}

Probab=99.58  E-value=5.4e-15  Score=122.12  Aligned_cols=92  Identities=21%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             ccCCCCCccccEEEEeCCC-CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCC---CeEEEEec------c
Q 019461            7 CSASKPSREIWAKLEPSDS-RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDL---HSAKMQNK------S   71 (340)
Q Consensus         7 ~~~~~~~~~~~~~L~~~~~-~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~---~~~~i~D~------S   71 (340)
                      |++.++.+..|+.|+-.++ ....+.|.++.++|||    +|.+++ .||+.||+|.+..+.   ..|+|+|+      |
T Consensus         1 m~~p~~~p~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S   80 (131)
T 3hx1_A            1 MSDPSAKPLQEHILIILDDAGRREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSS   80 (131)
T ss_dssp             --------CCEEEEEEEETTEEEEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCC
T ss_pred             CCCCCCCCCcceEEEEECCCCcEEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCC
Confidence            3455556667777776544 3456689999999999    688888 999999999987321   24999998      9


Q ss_pred             CCceEeccEecCCCceeeccCCCeeccCCC
Q 019461           72 SNAILVDDTMVQNEEVVDIKCGTEIIPGPD  101 (340)
Q Consensus        72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~~  101 (340)
                      +|||||||+++..   +.|.+||+|.+|..
T Consensus        81 ~NGT~vNg~~i~~---~~L~~GD~I~iG~~  107 (131)
T 3hx1_A           81 VNGLMINGKKVQE---HIIQTGDEIVMGPQ  107 (131)
T ss_dssp             SSCEEETTEEESE---EECCTTCEEECSTT
T ss_pred             CCceEECCEEeEe---EECCCCCEEEECCE
Confidence            9999999999985   89999999999983

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.55  E-value=5e-15  Score=114.51  Aligned_cols=72  Identities=24%  Similarity=0.499  Sum_probs=61.9

Q ss_pred             cccCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc---ccCcchHHHHHHHHHHHhc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~n~~l~~lve~~~~~~  202 (340)
                      ...+++.|+||+++|.+|+++ + |||+||..||.+|+....    ...||.||..+.   .+..|..+.++++.+....
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~----~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~   83 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESD----EHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET   83 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCT----TCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred             cCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcC----CCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence            345789999999999999998 9 999999999999997542    368999999974   2789999999999988765


Q ss_pred             c
Q 019461          203 S  203 (340)
Q Consensus       203 ~  203 (340)
                      .
T Consensus        84 ~   84 (92)
T 3ztg_A           84 G   84 (92)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}

Probab=99.53  E-value=1.4e-14  Score=120.95  Aligned_cols=82  Identities=10%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             EEeCCCCC--ceeEeeCCc-eEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceee
Q 019461           20 LEPSDSRF--ADVDISSNE-VVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVD   89 (340)
Q Consensus        20 L~~~~~~~--~~~~l~~~~-~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~   89 (340)
                      |+.+.+..  ..+.|.++. ++|||     +|.+++ .||+.||+|.++.....|+|+|+ |+|||||||++|.++..+.
T Consensus        37 L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~~~~~~~  116 (140)
T 2jpe_A           37 LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQ  116 (140)
T ss_dssp             EEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEECSSSCCE
T ss_pred             EEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECCCCccEE
Confidence            65555432  356777754 99999     477777 99999999999873345999999 9999999999999988999


Q ss_pred             ccCCCeeccCCC
Q 019461           90 IKCGTEIIPGPD  101 (340)
Q Consensus        90 l~~gd~I~lg~~  101 (340)
                      |.+||+|.+|..
T Consensus       117 L~~gd~i~~G~~  128 (140)
T 2jpe_A          117 IPIDSTVSFGAS  128 (140)
T ss_dssp             ECTTCCBBCSSC
T ss_pred             CCCCCEEEECCc
Confidence            999999999974

>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A

Probab=99.53  E-value=2.7e-14  Score=112.34  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             ccEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceee
Q 019461           16 IWAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVD   89 (340)
Q Consensus        16 ~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~   89 (340)
                      ..+.|.-.++....+.|.++.++|||    ++.+++ .||+.||+|.++++.  |+|+|+ |+|||||||+++.   .+.
T Consensus         4 ~~~~l~~~~g~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vng~~i~---~~~   78 (100)
T 3po8_A            4 TSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQV--ALLADLNSTNGTTVNNAPVQ---EWQ   78 (100)
T ss_dssp             EEEEEEECSSSCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEECSSC--EEEEECSCSSCCEETTEECS---EEE
T ss_pred             cEEEEEEECCCCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEeCCE--EEEEECCCCCCEEECCEECc---eEE
Confidence            34566666666777899999999999    688888 999999999998665  999999 9999999999997   679


Q ss_pred             ccCCCeeccCC
Q 019461           90 IKCGTEIIPGP  100 (340)
Q Consensus        90 l~~gd~I~lg~  100 (340)
                      |.+||+|.+|.
T Consensus        79 L~~gd~i~iG~   89 (100)
T 3po8_A           79 LADGDVIRLGH   89 (100)
T ss_dssp             CCTTCEEEETT
T ss_pred             CCCCCEEEECC
Confidence            99999999997

>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2

Probab=99.53  E-value=3e-14  Score=119.73  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=76.0

Q ss_pred             CccccEEEEeCCCCCceeEe-eCCceEEec----ccccCC-c----cccceEEEEEeCCCCeEEEEec-cCCceEeccEe
Q 019461           13 SREIWAKLEPSDSRFADVDI-SSNEVVICS----EITSSS-S----DKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTM   81 (340)
Q Consensus        13 ~~~~~~~L~~~~~~~~~~~l-~~~~~~iGr----~~~~~~-~----vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~   81 (340)
                      ....|..+ ........+.| .+..++|||    ++.+++ .    ||+.||+|.++.+ ..|+|+|+ |+|||||||++
T Consensus        14 ~~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S~NGT~vNg~~   91 (145)
T 2csw_A           14 GGRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKSLNGVWLNRAR   91 (145)
T ss_dssp             CSEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTT-SCEEEEBSSCSSCEEESSCB
T ss_pred             CCccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCC-CeEEEEECCCCCCeEECCEE
Confidence            33478744 44444556666 456799999    688887 6    9999999999532 25999998 99999999999


Q ss_pred             cCCCceeeccCCCeeccCCCCcc--eeccccccc
Q 019461           82 VQNEEVVDIKCGTEIIPGPDREV--YLNFRFKVV  113 (340)
Q Consensus        82 i~~~~~~~l~~gd~I~lg~~~~~--~~~y~f~i~  113 (340)
                      +..++.+.|.+||+|.+|.....  .+.|.|...
T Consensus        92 i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~  125 (145)
T 2csw_A           92 LEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT  125 (145)
T ss_dssp             CCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred             CCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence            99988999999999999985322  345555543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.52  E-value=6.6e-15  Score=110.27  Aligned_cols=68  Identities=19%  Similarity=0.348  Sum_probs=60.7

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~  202 (340)
                      .+++.|+||+++|.+|+++ +|||+||..||.+|+..+     ...||.||..+..  +.+|..|.++++.+++.+
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~-----~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~   75 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAG-----HKTCPKSQETLLHAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTT-----CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred             cccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHC-----cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence            4789999999999999999 999999999999999753     2689999999865  788999999999998764

>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}

Probab=99.51  E-value=7.9e-14  Score=112.52  Aligned_cols=83  Identities=12%  Similarity=0.028  Sum_probs=69.0

Q ss_pred             CccccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCC
Q 019461           13 SREIWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQN   84 (340)
Q Consensus        13 ~~~~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~   84 (340)
                      .+..++.|+-..+  ....+.|.++.++|||    ++.+++ .||+.||+|.++++  .|+|+|+ |+|||||||+++. 
T Consensus         7 ~p~~~~~L~v~~g~~~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~~--~~~l~Dl~S~nGt~vng~~i~-   83 (115)
T 2xt9_B            7 LPSGSALLVVKRGPNAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGG--EFQVVDVGSLNGTYVNREPVD-   83 (115)
T ss_dssp             -CCSCEEEEEEESTTTTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEETT--EEEEEECSCSSCEEETTEECS-
T ss_pred             CCCCcEEEEEEeCCCCCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEECC--EEEEEECCCCCCeEECCEEcc-
Confidence            3345566655433  3466789889999999    688888 99999999999855  5999999 9999999999998 


Q ss_pred             CceeeccCCCeeccCC
Q 019461           85 EEVVDIKCGTEIIPGP  100 (340)
Q Consensus        85 ~~~~~l~~gd~I~lg~  100 (340)
                        .+.|.+||+|.+|.
T Consensus        84 --~~~L~~gd~i~iG~   97 (115)
T 2xt9_B           84 --SAVLANGDEVQIGK   97 (115)
T ss_dssp             --EEEECTTCEEEETT
T ss_pred             --eEECCCCCEEEECC
Confidence              57999999999997

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}

Probab=99.49  E-value=7.3e-14  Score=118.29  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=68.9

Q ss_pred             cEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeec
Q 019461           17 WAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDI   90 (340)
Q Consensus        17 ~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l   90 (340)
                      -..|...++....+.|.++.++|||    +|.+++ .||+.||+|.++.+.  |+|+|+ |+|||||||++|.   .+.|
T Consensus        67 ~l~L~v~~g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~~~--~~l~DlgStNGT~VNG~~i~---~~~L  141 (157)
T 3oun_A           67 SVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQV--ALLADLNSTNGTTVNNAPVQ---EWQL  141 (157)
T ss_dssp             CCEEEETTTTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECSSC--EEEEECSCSSCCEETTEECS---EEEC
T ss_pred             EEEEEEcCCCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEECCE--EEEEECCCCCCeEECCEECc---eEEC
Confidence            4456666666677899999999999    688888 999999999998665  999999 9999999999997   5799


Q ss_pred             cCCCeeccCC
Q 019461           91 KCGTEIIPGP  100 (340)
Q Consensus        91 ~~gd~I~lg~  100 (340)
                      .+||+|.+|.
T Consensus       142 ~~GD~I~lG~  151 (157)
T 3oun_A          142 ADGDVIRLGH  151 (157)
T ss_dssp             CTTCEEEETT
T ss_pred             CCCCEEEECC
Confidence            9999999987

>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A

Probab=99.48  E-value=1.6e-13  Score=114.82  Aligned_cols=80  Identities=15%  Similarity=0.049  Sum_probs=68.2

Q ss_pred             ccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461           16 IWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV   87 (340)
Q Consensus        16 ~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~   87 (340)
                      ..+.|+-..+  ....+.|.++.++|||    +|.+++ .||+.||+|.++++  .|+|+|+ |+|||||||+++.   .
T Consensus        45 ~~~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~--~~~l~DlgS~NGT~VNg~~i~---~  119 (143)
T 2kb3_A           45 GSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRINEG--EFEVVDVGSLNGTYVNREPRN---A  119 (143)
T ss_dssp             SCEEEEEEESTTTTCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEETT--EEEEEESCCSSCCEETTEECS---E
T ss_pred             ccEEEEEEeCCCCCeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEECC--EEEEEECCCcCCeEECCEEcc---e
Confidence            4566665543  3466789889999999    688888 99999999999755  5999999 9999999999998   5


Q ss_pred             eeccCCCeeccCC
Q 019461           88 VDIKCGTEIIPGP  100 (340)
Q Consensus        88 ~~l~~gd~I~lg~  100 (340)
                      +.|.+||+|.+|.
T Consensus       120 ~~L~~GD~I~iG~  132 (143)
T 2kb3_A          120 QVMQTGDEIQIGK  132 (143)
T ss_dssp             EECCTTEEEEETT
T ss_pred             EECCCCCEEEECC
Confidence            7999999999997

>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2

Probab=99.48  E-value=1e-13  Score=112.72  Aligned_cols=84  Identities=12%  Similarity=0.123  Sum_probs=70.5

Q ss_pred             CccccEEEEeCCCC-------CceeEeeCCceEEec------ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEe
Q 019461           13 SREIWAKLEPSDSR-------FADVDISSNEVVICS------EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILV   77 (340)
Q Consensus        13 ~~~~~~~L~~~~~~-------~~~~~l~~~~~~iGr------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~v   77 (340)
                      .+...+.|+.+++.       ...+.|.++.++|||      +|.+++ .||+.||+|.+.++.  |+|+|+ |+|||||
T Consensus         7 ~~~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~~~--~~l~dl~S~ngt~v   84 (120)
T 1wln_A            7 GPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGV--VTVTPRSMDAETYV   84 (120)
T ss_dssp             CGGGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSC--EEEEESCSSSCEEE
T ss_pred             CCCCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEcCCE--EEEEECCCCCCEEE
Confidence            34567788876642       345688888999995      588888 999999999998655  999999 8999999


Q ss_pred             ccEecCCCceeeccCCCeeccCC
Q 019461           78 DDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        78 ng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      ||++|.  +.+.|.+||+|.+|.
T Consensus        85 Ng~~i~--~~~~L~~GD~I~iG~  105 (120)
T 1wln_A           85 DGQRIS--ETTMLQSGMRLQFGT  105 (120)
T ss_dssp             TSCBCS--SCEEECTTCEEEETT
T ss_pred             CCEEcC--CCEECCCCCEEEECC
Confidence            999997  467999999999998

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.48  E-value=3.2e-14  Score=108.67  Aligned_cols=68  Identities=13%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      .+++.||||+++|.+||++ +|||+||+.||.+|+...      .+||.|+..+..  +.+|..|.++++.+...+.
T Consensus        12 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~------~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNS------PTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             chheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcC------CCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            4789999999999999999 999999999999999853      489999998876  8899999999999987654

>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*

Probab=99.47  E-value=4.9e-14  Score=115.85  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             cccEEEEeCCC---CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCC
Q 019461           15 EIWAKLEPSDS---RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNE   85 (340)
Q Consensus        15 ~~~~~L~~~~~---~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~   85 (340)
                      ..+++|+.+.+   ....+.|.+..++|||    +|.+++ .||+.||+|.++++.  |+|+|+ |+|||||||+++.. 
T Consensus        10 ~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vNg~~i~~-   86 (128)
T 1r21_A           10 WPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQE--AILHNFSSTNPTQVNGSVIDE-   86 (128)
T ss_dssp             CCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSC--EEECCCCSSSCCEETTEECSS-
T ss_pred             CCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEECCE--EEEEECCCCCCEEECCEECCC-
Confidence            36888887653   2345688889999999    688888 999999999998655  999999 99999999999983 


Q ss_pred             ceeeccCCCeeccCC
Q 019461           86 EVVDIKCGTEIIPGP  100 (340)
Q Consensus        86 ~~~~l~~gd~I~lg~  100 (340)
                       .+.|.+||+|.+|.
T Consensus        87 -~~~L~~Gd~i~iG~  100 (128)
T 1r21_A           87 -PVRLKHGDVITIID  100 (128)
T ss_dssp             -CEECCTTEEEECSS
T ss_pred             -cEEcCCCCEEEECC
Confidence             68999999999996

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.46  E-value=3.4e-14  Score=111.36  Aligned_cols=71  Identities=24%  Similarity=0.565  Sum_probs=62.7

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS  204 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~  204 (340)
                      ..+.+.|+||++.|.+|+++.+|||+||..|+.+|+...      ..||.||..+..  +..|..+.++++.+.+..++
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~   91 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------TQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH   91 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence            346799999999999998887899999999999999754      489999999876  88899999999999877654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.45  E-value=1.4e-13  Score=134.34  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             CCCccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-c---------cccceEEEEEeCCCC---eEEEEeccCC
Q 019461           11 KPSREIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-S---------DKHEWCKITRNSDLH---SAKMQNKSSN   73 (340)
Q Consensus        11 ~~~~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~---------vS~~H~~i~~~~~~~---~~~i~D~StN   73 (340)
                      +|.+++||+|+++..++..+.|.++.++|||    ++.+++ .         ||++||+|+++.+..   .++|+|.|+|
T Consensus         4 ~~~~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~n   83 (419)
T 3i6u_A            4 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN   83 (419)
T ss_dssp             --CCCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSS
T ss_pred             cccCCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcC
Confidence            4566799999999999999999999999999    566666 4         499999998763221   3999999999


Q ss_pred             ceEeccEecCCCceeeccCCCeeccCCCCc
Q 019461           74 AILVDDTMVQNEEVVDIKCGTEIIPGPDRE  103 (340)
Q Consensus        74 gt~vng~~i~~~~~~~l~~gd~I~lg~~~~  103 (340)
                      ||||||.+++++.+..+.+||.|.+|....
T Consensus        84 Gt~vn~~~~~~~~~~~l~~~d~i~~~~~~~  113 (419)
T 3i6u_A           84 GTFVNTELVGKGKRRPLNNNSEIALSLSRN  113 (419)
T ss_dssp             CEEETTEECCTTCEEECCTTEEEEESSTTC
T ss_pred             CceECcccccCCCcccCCCCCEeeeecccc
Confidence            999999999999999999999999997654

>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A

Probab=99.45  E-value=2.7e-13  Score=115.67  Aligned_cols=80  Identities=13%  Similarity=0.040  Sum_probs=67.9

Q ss_pred             ccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461           16 IWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV   87 (340)
Q Consensus        16 ~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~   87 (340)
                      ..+.|+-..+  ....+.|.++.++|||    +|.+++ .||++||+|.++++  .|+|+|+ |+|||||||+++.   .
T Consensus        54 ~~~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~--~~~l~DlgS~NGT~VNg~~i~---~  128 (162)
T 2kfu_A           54 GSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENN--EFNVVDVGSLNGTYVNREPVD---S  128 (162)
T ss_dssp             SCCEEEEEESTTCSCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEETT--EEEEECCCCSSCEEETTBCCS---E
T ss_pred             ccEEEEEEeCCCCCeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEECC--EEEEEECCCCCCeEECCEEcc---e
Confidence            4556655443  3456788889999999    688888 99999999999865  5999999 9999999999997   5


Q ss_pred             eeccCCCeeccCC
Q 019461           88 VDIKCGTEIIPGP  100 (340)
Q Consensus        88 ~~l~~gd~I~lg~  100 (340)
                      +.|.+||+|.+|.
T Consensus       129 ~~L~~GD~I~iG~  141 (162)
T 2kfu_A          129 AVLANGDEVQIGK  141 (162)
T ss_dssp             EECCSSCEEEETT
T ss_pred             EECCCCCEEEECC
Confidence            7999999999997

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.45  E-value=8.4e-14  Score=109.16  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=61.9

Q ss_pred             cCCceeccccccccCccEeCCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS  204 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~  204 (340)
                      .+++.||||+++|.+||++ +|| |+||+.||.+|+...      .+||.||..+..  +.+|..|.++++.++..+..
T Consensus        20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~------~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   91 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSD------QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTS------CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhC------CCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence            4789999999999999999 999 999999999999753      489999999876  88999999999999877643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.44  E-value=7.1e-14  Score=109.98  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=62.0

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS  204 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~  204 (340)
                      .+++.||||+++|.+||++ +|||+||+.||.+|+...      .+||.|+..+..  +.+|..|.++++.+...+.+
T Consensus        27 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~------~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   97 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNS------PTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN   97 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSC------SBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred             cHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcC------CCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence            4789999999999999999 999999999999999743      589999999876  88999999999999877653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.44  E-value=4e-14  Score=115.59  Aligned_cols=70  Identities=23%  Similarity=0.485  Sum_probs=61.1

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHhc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~~  202 (340)
                      ...+++.|+||+++|.+|+++ +|||+||..||..|+...     ...||.||..+..   +..|..+.++++.++...
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~  120 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY  120 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTT-----CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred             hCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHC-----cCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence            345779999999999999999 999999999999999843     2689999999976   889999999999887543

>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}

Probab=99.44  E-value=4.7e-13  Score=106.37  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             EEEeCCC--CCceeEeeCC-ceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCcee
Q 019461           19 KLEPSDS--RFADVDISSN-EVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVV   88 (340)
Q Consensus        19 ~L~~~~~--~~~~~~l~~~-~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~   88 (340)
                      +|..+.+  ....+.|..+ .++|||     ++.+++ .||+.||+|.++.++ .|+|+|+ |+|||||||+++..  .+
T Consensus         6 ~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~~~l~Dl~S~nGt~vng~~i~~--~~   82 (106)
T 3gqs_A            6 LLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN-SVLIEDLGSKNGVIVEGRKIEH--QS   82 (106)
T ss_dssp             EEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS-CEEEEECSCSSCCEETTEECSS--EE
T ss_pred             EEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC-cEEEEECcCCCCeEECCEECCC--Ce
Confidence            3544444  2355688876 489999     467777 999999999998332 4999999 99999999999986  57


Q ss_pred             eccCCCeeccCC
Q 019461           89 DIKCGTEIIPGP  100 (340)
Q Consensus        89 ~l~~gd~I~lg~  100 (340)
                      .|.+||+|.+|.
T Consensus        83 ~L~~Gd~i~~G~   94 (106)
T 3gqs_A           83 TLSANQVVALGT   94 (106)
T ss_dssp             ECCTTCCEEETT
T ss_pred             ECCCCCEEEECC
Confidence            999999999997

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=106.91  Aligned_cols=74  Identities=14%  Similarity=0.277  Sum_probs=61.2

Q ss_pred             cCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCC--CCcc-cc--ccCcchHHHHHHHHHHHhc
Q 019461          129 IEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPH--CRAV-VQ--FVGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~-~~--~~~~n~~l~~lve~~~~~~  202 (340)
                      .+++.||||+++|.+||++ + |||+||+.||.+|+.......+...||.  |+.. +.  .+.+|..|.++++.++...
T Consensus         5 ~~~~~CPI~~~~~~dPV~~-~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKN-KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEE-SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CcEeECcCcCchhcCCEEc-CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999 7 9999999999999986421223578999  9865 44  3899999999999987654


Q ss_pred             c
Q 019461          203 S  203 (340)
Q Consensus       203 ~  203 (340)
                      .
T Consensus        84 ~   84 (94)
T 2yu4_A           84 H   84 (94)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*

Probab=99.43  E-value=4.5e-13  Score=106.23  Aligned_cols=87  Identities=6%  Similarity=0.014  Sum_probs=77.4

Q ss_pred             cccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceee
Q 019461           15 EIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVD   89 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~   89 (340)
                      .....|+|.++..+.|.|.  .+.++|||  +..+++ ++||+|++|..+.+...+++.++++|++++||+++.+++.+.
T Consensus         7 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k~~~~~   86 (110)
T 2brf_A            7 PGRLWLESPPGEAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGS   86 (110)
T ss_dssp             -CEEEEECSTTSSCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEE
T ss_pred             CcEEEEEeCCCCCCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCCCCEEE
Confidence            4578899999998999995  68999999  455777 999999999999887889999999999999999999999999


Q ss_pred             ccCCCeeccCCC
Q 019461           90 IKCGTEIIPGPD  101 (340)
Q Consensus        90 l~~gd~I~lg~~  101 (340)
                      |++||.|.+.++
T Consensus        87 L~~GD~leLl~g   98 (110)
T 2brf_A           87 LGVGDTLYLVNG   98 (110)
T ss_dssp             EETTCEEEEETT
T ss_pred             ecCCCEEEEccC
Confidence            999999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.43  E-value=5.6e-14  Score=110.55  Aligned_cols=73  Identities=25%  Similarity=0.564  Sum_probs=61.5

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ....+++.|+||+++|.+|+++++|||+||..||.+|+....     ..||.||..+..  +..|..+.++++.+.....
T Consensus        17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~   91 (100)
T 3lrq_A           17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----AQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL   91 (100)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred             ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----CCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence            344578999999999999999339999999999999998763     589999999876  7888999999887765543

>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2

Probab=99.43  E-value=9.6e-13  Score=108.01  Aligned_cols=88  Identities=6%  Similarity=-0.012  Sum_probs=80.2

Q ss_pred             cccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceee
Q 019461           15 EIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVD   89 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~   89 (340)
                      .....|+|+++..+.|.|.  .+.++|||  +..+++ ++||+|++|..+.+.+.++|.++++|+++|||+.++++..+.
T Consensus         7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~~L~k~~~~~   86 (143)
T 1yj5_C            7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGLSGS   86 (143)
T ss_dssp             CEEEEEECCTTSCCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCTTCEEE
T ss_pred             CCeEEEEecCCCCCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECCEEecCCCEEE
Confidence            6778999999988999995  78999999  556777 999999999999887789999999999999999999999999


Q ss_pred             ccCCCeeccCCCC
Q 019461           90 IKCGTEIIPGPDR  102 (340)
Q Consensus        90 l~~gd~I~lg~~~  102 (340)
                      |++||.|.+.++.
T Consensus        87 L~~GD~LeLl~g~   99 (143)
T 1yj5_C           87 LSLGDVLYLVNGL   99 (143)
T ss_dssp             ECTTCEEESSSSC
T ss_pred             ecCCCEEEEecCC
Confidence            9999999988743

>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}

Probab=99.40  E-value=7.6e-13  Score=112.53  Aligned_cols=75  Identities=12%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             ceeEeeC-CceEEecc-------------------cccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEeccEecC
Q 019461           28 ADVDISS-NEVVICSE-------------------ITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVDDTMVQ   83 (340)
Q Consensus        28 ~~~~l~~-~~~~iGr~-------------------~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vng~~i~   83 (340)
                      ..+.|.. ..++|||+                   |.+++ .||+.||.|.+..+..  .|+|+|+ |+|||||||++|.
T Consensus        48 ~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ri~  127 (158)
T 3els_A           48 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP  127 (158)
T ss_dssp             EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred             eEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEEcC
Confidence            4567765 46899995                   23445 8999999999886543  3999999 9999999999999


Q ss_pred             CCceeeccCCCeeccCCCC
Q 019461           84 NEEVVDIKCGTEIIPGPDR  102 (340)
Q Consensus        84 ~~~~~~l~~gd~I~lg~~~  102 (340)
                      .+..+.|.+||+|.+|...
T Consensus       128 ~~~~~~L~~GD~I~~G~s~  146 (158)
T 3els_A          128 GARYIELRSGDVLTLSEFE  146 (158)
T ss_dssp             TTCCEECCTTEEEESSSCG
T ss_pred             CCceEEcCCCCEEEECCCC
Confidence            9988999999999999753

>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0

Probab=99.39  E-value=1.4e-12  Score=102.35  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=74.7

Q ss_pred             EEEeCCCCCceeEeeCCce-EEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCC
Q 019461           19 KLEPSDSRFADVDISSNEV-VICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGT   94 (340)
Q Consensus        19 ~L~~~~~~~~~~~l~~~~~-~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd   94 (340)
                      .|+|.+++.+.|.|..++. +|||  +..++| ++||+|++|..+.+.+.++|.++++|+++|||+.+++++.+.|++||
T Consensus         6 ~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~~GD   85 (102)
T 3kt9_A            6 WLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQ   85 (102)
T ss_dssp             EEEETTSTTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTC
T ss_pred             EEEecCCCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeCCCC
Confidence            5899999899999988775 5799  455677 99999999999977667899999999999999999999999999999


Q ss_pred             eeccCCCC
Q 019461           95 EIIPGPDR  102 (340)
Q Consensus        95 ~I~lg~~~  102 (340)
                      .|.+.++.
T Consensus        86 ~l~Ll~~~   93 (102)
T 3kt9_A           86 VLHMVNEL   93 (102)
T ss_dssp             CEEEETTE
T ss_pred             EEEEccCC
Confidence            99988743

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.39  E-value=1.1e-13  Score=115.15  Aligned_cols=67  Identities=28%  Similarity=0.692  Sum_probs=57.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHHHHh
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQA  201 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~~~~  201 (340)
                      .+++++|+||++.|.+|+++ ||||+||..||..|+...      ..||.||+.+.....|..++++++.++..
T Consensus        50 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~  116 (138)
T 4ayc_A           50 LENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRK------IECPICRKDIKSKTYSLVLDNCINKMVNN  116 (138)
T ss_dssp             HHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTC------SBCTTTCCBCCCEEECHHHHHHHHHHHTT
T ss_pred             ccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcC------CcCCCCCCcCCCCCCccchhHHHHHHHHH
Confidence            45678999999999999999 999999999999999765      48999999998766778888888776643

>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2

Probab=99.39  E-value=2.1e-12  Score=103.57  Aligned_cols=89  Identities=6%  Similarity=-0.001  Sum_probs=80.3

Q ss_pred             CccccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCce
Q 019461           13 SREIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEV   87 (340)
Q Consensus        13 ~~~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~   87 (340)
                      ......+|+|.++..+.|.|.  ...++|||  +..++| ++||+|++|..+.+...++|.++++|+++|||+++.++..
T Consensus        12 ~~~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~k~~~   91 (119)
T 1ujx_A           12 GSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGLS   91 (119)
T ss_dssp             SCCCCEEEECCSSSCCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCTTCE
T ss_pred             CccceEEEEeCCCCCCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECCEEecCCCE
Confidence            336788999999988999995  78999999  556777 9999999999998877899999999999999999999999


Q ss_pred             eeccCCCeeccCCC
Q 019461           88 VDIKCGTEIIPGPD  101 (340)
Q Consensus        88 ~~l~~gd~I~lg~~  101 (340)
                      +.|++||.|.+.++
T Consensus        92 ~~L~~GD~l~Ll~g  105 (119)
T 1ujx_A           92 GSLSLGDVLYLVNG  105 (119)
T ss_dssp             EEEETTCCCBCBTT
T ss_pred             EEecCCCEEEEecC
Confidence            99999999998774

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.38  E-value=1.6e-13  Score=109.23  Aligned_cols=70  Identities=29%  Similarity=0.643  Sum_probs=60.5

Q ss_pred             hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc------cCcchHHHHHHHHH
Q 019461          125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF------VGRNHYLHNIEQSI  198 (340)
Q Consensus       125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~------~~~n~~l~~lve~~  198 (340)
                      .....+++.|+||+++|.+|+++.+|||+||..||..|+...      ..||.||..+..      +..|..+.++++.+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~   82 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL   82 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------CcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence            344567899999999999999977999999999999999764      489999999874      57899999999987


Q ss_pred             HH
Q 019461          199 LQ  200 (340)
Q Consensus       199 ~~  200 (340)
                      +.
T Consensus        83 ~~   84 (108)
T 2ckl_A           83 VP   84 (108)
T ss_dssp             ST
T ss_pred             hh
Confidence            65

>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A

Probab=99.37  E-value=1.1e-12  Score=115.26  Aligned_cols=76  Identities=12%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             CceeEee-CCceEEecc-------------------cccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEeccEec
Q 019461           27 FADVDIS-SNEVVICSE-------------------ITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVDDTMV   82 (340)
Q Consensus        27 ~~~~~l~-~~~~~iGr~-------------------~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vng~~i   82 (340)
                      ...+.|. +..++|||+                   |.+++ .||+.||.|.+..+..  .|+|+|+ |+|||||||++|
T Consensus        94 i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI  173 (205)
T 3elv_A           94 WKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI  173 (205)
T ss_dssp             SEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEEC
T ss_pred             ceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEEC
Confidence            3456774 467999985                   34556 8999999998775432  4999999 999999999999


Q ss_pred             CCCceeeccCCCeeccCCCC
Q 019461           83 QNEEVVDIKCGTEIIPGPDR  102 (340)
Q Consensus        83 ~~~~~~~l~~gd~I~lg~~~  102 (340)
                      .....+.|.+||+|.+|...
T Consensus       174 ~~~~~~~L~~GD~I~fG~s~  193 (205)
T 3elv_A          174 PGARYIELRSGDVLTLSEFE  193 (205)
T ss_dssp             CBTSCEECCTTCEEESSSSG
T ss_pred             CCCceeECCCCCEEEECCCC
Confidence            99988999999999999753

>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*

Probab=99.37  E-value=1.8e-12  Score=105.68  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             ccEEEEeCCCC--Cc---eeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCC
Q 019461           16 IWAKLEPSDSR--FA---DVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNE   85 (340)
Q Consensus        16 ~~~~L~~~~~~--~~---~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~   85 (340)
                      .-+.|+.+++.  ..   .+.|.+ .++|||    ||.+++ .||+.||.|.++.+ +.++|+|+++|||||||++|.. 
T Consensus        25 ~~PhLvnLn~Dp~~s~~l~y~L~~-~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~-g~~~l~dl~~ngt~VNG~~V~~-  101 (124)
T 3fm8_A           25 DKCFLVNLNADPALNELLVYYLKE-HTLIGSANSQDIQLCGMGILPEHCIIDITSE-GQVMLTPQKNTRTFVNGSSVSS-  101 (124)
T ss_dssp             --CEEEETTCCTTSSCCCEEECCS-EEEEESSTTCSEECCSTTCCSSCEEEEECTT-SCEEEEECTTCCEEETTEECCS-
T ss_pred             CccEEEEeCCCCccCceEEEECCC-CeEECCCCCCCEEECCCCeecceEEEEECCC-CeEEEEECCCCCEEECCEEcCC-
Confidence            45578877762  12   235544 699999    799998 99999999998422 2499999999999999999973 


Q ss_pred             ceeeccCCCeeccCC
Q 019461           86 EVVDIKCGTEIIPGP  100 (340)
Q Consensus        86 ~~~~l~~gd~I~lg~  100 (340)
                       .+.|.+||+|.+|.
T Consensus       102 -~~~L~~GD~I~lG~  115 (124)
T 3fm8_A          102 -PIQLHHGDRILWGN  115 (124)
T ss_dssp             -CEEECTTCEEEETT
T ss_pred             -cEECCCCCEEEECC
Confidence             68999999999997

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.36  E-value=2.8e-13  Score=114.38  Aligned_cols=68  Identities=22%  Similarity=0.485  Sum_probs=59.9

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHh
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQA  201 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~  201 (340)
                      ..+.+.|+||+++|.+|+++ +|||+||..||.+|+....     ..||.||..+..   +..|..+.++++.++..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQV-----FSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTC-----CBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             CccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCC-----CcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            34679999999999999998 9999999999999998643     689999999875   68999999999987643

>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose) mitosis, antephase checkpoint, cell cycle; HET: PGE ADP ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A

Probab=99.36  E-value=1.7e-13  Score=123.15  Aligned_cols=63  Identities=27%  Similarity=0.632  Sum_probs=54.0

Q ss_pred             CCCCcccCCCCCcccCccccCCCCCCCC-------CCCccccccccccccccccCCccCC-CCCcccccCC
Q 019461          259 EINGFHCNQTTVHLQCQGCGGMMPSRND-------SVPQHCLGCDRAFCGAYWHAQMVAR-SDSQPMCSHE  321 (340)
Q Consensus       259 ~~~~~~C~~~~~hl~C~~C~~~~p~r~~-------~~~~~C~~C~~~~C~~y~~~~~~~~-~~~~~~~~~~  321 (340)
                      .+++|+||..+.|+.|++|.++||+|+.       .++++|.+|+++|||||||+.++++ +...++|+++
T Consensus        67 ~~~gf~Cp~~~~H~~C~~C~~~MP~R~~~~~~~~~~~pq~C~iC~r~FC~lYw~c~~~~c~g~L~~~~dl~  137 (261)
T 2xoc_A           67 AVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN  137 (261)
T ss_dssp             ---CCCCCTTCCEEECTTTCCEEECCHHHHHTCTTSCCCBCTTTCCBCCHHHHCCCCTTCSCSEEEGGGCC
T ss_pred             CCCCCcCCCCCCCcCcCcccCcCCCCCccccccCCCCCCCCCCcCccccCcccccCCCCCcccccchhhcC
Confidence            4589999999999999999999999963       7899999999999999999998766 5556777776

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.35  E-value=4.7e-14  Score=113.63  Aligned_cols=71  Identities=30%  Similarity=0.600  Sum_probs=58.8

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---------cCcchHHHHHHH
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---------VGRNHYLHNIEQ  196 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---------~~~n~~l~~lve  196 (340)
                      ....+++.|+||+++|.+|+++ +|||+||..||.+|+....     ..||.||..+..         +..|..+.++++
T Consensus        10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~   83 (115)
T 3l11_A           10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKAS-----LCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ   83 (115)
T ss_dssp             CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTT-----SBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCc-----CCCCCCCcccCccccccccccchhhHHHHHHHH
Confidence            3445789999999999999999 9999999999999986533     689999998763         556888888888


Q ss_pred             HHHHhc
Q 019461          197 SILQAH  202 (340)
Q Consensus       197 ~~~~~~  202 (340)
                      .++...
T Consensus        84 ~~~p~~   89 (115)
T 3l11_A           84 KHYPRE   89 (115)
T ss_dssp             HHSHHH
T ss_pred             HHCCHH
Confidence            776543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=1.8e-13  Score=103.51  Aligned_cols=66  Identities=29%  Similarity=0.609  Sum_probs=53.0

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNI  194 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~l  194 (340)
                      ..+.+.|+||++.|.+|+.+ +|+|+||..|+..|+...........||.||..+..  +..|..+.++
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             CccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            34789999999999999988 999999999999999874322235799999999875  5666655544

>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A

Probab=99.33  E-value=3.9e-12  Score=107.80  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=67.3

Q ss_pred             cccEEEEeCCCC--Cce---eEeeCCceEEec-------ccccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEec
Q 019461           15 EIWAKLEPSDSR--FAD---VDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVD   78 (340)
Q Consensus        15 ~~~~~L~~~~~~--~~~---~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vn   78 (340)
                      ..-+.|+.+++.  +..   +.|.++.++|||       ||.+++ .||+.||.|.+++++.  .+++.|+ |+||||||
T Consensus        36 ~~~PhLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VN  115 (154)
T 4ejq_A           36 KKTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN  115 (154)
T ss_dssp             SSSCEEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEET
T ss_pred             CCCceEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEEC
Confidence            345678887762  222   478888999999       588988 9999999999986542  3666665 99999999


Q ss_pred             cEecCCCceeeccCCCeeccCC
Q 019461           79 DTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        79 g~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      |++|..  .+.|++||+|.+|.
T Consensus       116 G~~i~~--~~~L~~GD~I~~G~  135 (154)
T 4ejq_A          116 GKKVTE--PSILRSGNRIIMGK  135 (154)
T ss_dssp             TEECCS--CEECCTTCEEEETT
T ss_pred             CEEcCC--ceECCCCCEEEECC
Confidence            999953  67899999999997

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.32  E-value=4.8e-14  Score=105.58  Aligned_cols=67  Identities=25%  Similarity=0.548  Sum_probs=52.7

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccC-CCCCcCCCCCCccccc--cCcchHHHHH
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQE-KRSTVLCPHCRAVVQF--VGRNHYLHNI  194 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~--~~~n~~l~~l  194 (340)
                      ...+++.|+||++.|.+|+++ +|||+||..|+.+|+..... ......||.||..+..  +..|..|.++
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             hcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            345789999999999999998 99999999999999875311 1225789999999865  6666665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=99.31  E-value=4.7e-12  Score=122.73  Aligned_cols=82  Identities=17%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             ccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461           14 REIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV   87 (340)
Q Consensus        14 ~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~   87 (340)
                      ..+|+.|+.... ...+.|.++.++|||    +|.+++ .||+.||+|.++++.  |+|+|+ |+|||||||+++.  +.
T Consensus       286 ~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vng~~i~--~~  360 (388)
T 2ff4_A          286 QQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTN--YVINDLRSSNGVHVQHERIR--SA  360 (388)
T ss_dssp             SBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSC--EEEEECSCSSCCEETTEECS--SE
T ss_pred             CCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEECCE--EEEEECCCCCCeEECCEECC--Cc
Confidence            357888877554 367899999999999    688888 999999999998665  999999 9999999999995  47


Q ss_pred             eeccCCCeeccCC
Q 019461           88 VDIKCGTEIIPGP  100 (340)
Q Consensus        88 ~~l~~gd~I~lg~  100 (340)
                      +.|++||+|.+|.
T Consensus       361 ~~L~~gd~i~~G~  373 (388)
T 2ff4_A          361 VTLNDGDHIRICD  373 (388)
T ss_dssp             EEECTTCEEEETT
T ss_pred             eECCCCCEEEECC
Confidence            8999999999997

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.9e-13  Score=103.45  Aligned_cols=66  Identities=29%  Similarity=0.618  Sum_probs=52.7

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNI  194 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~l  194 (340)
                      ..+.+.|+||++.+.+|+.+ +|||+||..|+..|+.......+...||.||..+..  +..|..+.++
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            44789999999999999998 999999999999999873211234789999999875  6666665444

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.30  E-value=8.9e-13  Score=112.86  Aligned_cols=71  Identities=25%  Similarity=0.555  Sum_probs=59.4

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHhc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~~  202 (340)
                      ...+.+.|+||++.|.+|+++++|||+||..||..|+....     ..||.||..+..   +..|..+.++++.+....
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~  123 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN-----KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR  123 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC-----CBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc-----CCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence            34567899999999999998879999999999999998633     589999998854   788999999999886543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.29  E-value=6.1e-13  Score=107.51  Aligned_cols=70  Identities=24%  Similarity=0.466  Sum_probs=60.5

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ....+++.|+||+++|.+|+++.+|||+||..||..|+.        ..||.||..+..  +..|..+.++++.+.+..+
T Consensus        17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence            334578999999999999998768999999999999986        379999999865  7889999999998876543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=96.95  Aligned_cols=55  Identities=24%  Similarity=0.515  Sum_probs=47.3

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc-cCcch
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF-VGRNH  189 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~n~  189 (340)
                      ..+.+.|+||++.|.+|+++ +|||+||..|+.+|+...      ..||.||..+.. +..|.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~   67 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRAT------PRCYICDQPTGGIFNPAK   67 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHHC------SBCSSSCCBCCSCCEECH
T ss_pred             CCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHCC------CcCCCcCccccccCCcHH
Confidence            44678999999999999988 999999999999999764      489999999875 45553

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.28  E-value=1.8e-12  Score=96.08  Aligned_cols=52  Identities=29%  Similarity=0.640  Sum_probs=45.0

Q ss_pred             cccCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ...+++.|+||++.|.+|+++ + |||+||..||.+|+....    ...||.||+.+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~----~~~CP~Cr~~~~   63 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESD----EHTCPTCHQNDV   63 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSS----SSCCSSSCCSSC
T ss_pred             cCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcC----CCcCCCCCCcCC
Confidence            345789999999999999998 8 999999999999998642    358999999754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.28  E-value=7.6e-13  Score=105.66  Aligned_cols=70  Identities=21%  Similarity=0.534  Sum_probs=58.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHh
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQA  201 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~  201 (340)
                      ..+.+.|+||++.+.+|+++ +|||+||..|+.+|+....   +...||.||..+..  +..|..+.++++.+++.
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~   89 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKK---GPSQCPLCKNDITKRSLQESTRFSQLVEELLKI   89 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSS---SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCC---CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence            34678999999999999998 9999999999999998542   34689999999876  67788888888877653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.2e-12  Score=95.01  Aligned_cols=52  Identities=33%  Similarity=0.670  Sum_probs=46.0

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...+.+.|+||++.|.+|+++.+|||+||..||.+|+...      ..||.||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~   62 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------NRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------SSCTTTCCCCCS
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------CcCCCcCcccCc
Confidence            3457899999999999999877999999999999999764      489999998865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.26  E-value=3.7e-12  Score=117.27  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=61.9

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ..+.+.||||+++|.+||++ ||||+||+.||.+|+..+.     ..||.||.++..  +.+|..|.++++.++..++
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~-----~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-----HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC-----SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             CCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCC-----CCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence            34789999999999999999 9999999999999998653     359999999875  8899999999999987653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.24  E-value=5.9e-12  Score=108.82  Aligned_cols=69  Identities=13%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      .+++.||||+++|.+||++ ||||+||+.||..|+....     .+||.|+.++..  +.+|..|.++++.+...+.
T Consensus       104 p~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~-----~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A          104 PDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-----HFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred             cHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCC-----CCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence            4789999999999999999 9999999999999998643     279999999876  8899999999999987653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.8e-12  Score=91.48  Aligned_cols=51  Identities=24%  Similarity=0.527  Sum_probs=44.3

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|+||++.+.+|+.+ +|||+||..|+.+|+...     ...||.||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSS-----SPKCTACQESIVK   62 (66)
T ss_dssp             CCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTS-----SCCCTTTCCCCCT
T ss_pred             CCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhC-----cCCCCCCCcCCCh
Confidence            35789999999999999998 999999999999999633     2589999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.22  E-value=4.9e-12  Score=102.31  Aligned_cols=64  Identities=23%  Similarity=0.466  Sum_probs=54.0

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS  197 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~  197 (340)
                      ..+.+.|+||++++.+|+++ +|||+||..||.+|+....     ..||.||..+..  +..+..+.++++.
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~l~~~i~~   80 (118)
T 3hct_A           15 LESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-----HKCPVDNEILLENQLFPDNFAKREILS   80 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred             CCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC-----CCCCCCCCCcCHHhcccCHHHHHHHcc
Confidence            34779999999999999998 9999999999999998764     489999999876  5567777666654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=4.9e-12  Score=93.10  Aligned_cols=55  Identities=35%  Similarity=0.644  Sum_probs=46.1

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+.+.|+||++.+.+|+++ +|||+||..|+.+|+...   .....||.||+.+..
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence            3445789999999999999999 999999999999998632   124689999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=7.9e-12  Score=89.43  Aligned_cols=49  Identities=37%  Similarity=0.695  Sum_probs=41.8

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ....+++.|+||++.|.+|+++ +|||+||..||.+|++...   ....||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSC---GFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCS---SCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCC---CCCcCcCC
Confidence            4456789999999999999999 9999999999999998521   24689988

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=4.4e-12  Score=96.68  Aligned_cols=55  Identities=25%  Similarity=0.620  Sum_probs=46.7

Q ss_pred             ccccCCceeccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          126 SIDIEHAKCCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+.+.|+||++.|.+    |+.+ +|||+||..|+.+|+....   ....||.||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSI---NGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCS---SCBCCTTTCCCBCC
T ss_pred             hhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCC---CCcCCCCCCCcccc
Confidence            445578999999999998    9888 9999999999999998751   24689999998754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=9.7e-12  Score=91.25  Aligned_cols=50  Identities=28%  Similarity=0.607  Sum_probs=44.3

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|+||++.+.+|+.+ +|+|.||..||.+|+...      ..||.||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG------KRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS------SBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC------CcCcCcCchhCH
Confidence            35778999999999999999 999999999999998754      489999998764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.15  E-value=1.2e-11  Score=90.47  Aligned_cols=50  Identities=28%  Similarity=0.788  Sum_probs=43.9

Q ss_pred             ccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .++++.|+||++.+.+|       +.+ +|||+||..|+.+|+...      ..||.||+.+..
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~   63 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH   63 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC------CCCCCCCCccCh
Confidence            35789999999999988       666 999999999999999875      389999998865

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.15  E-value=2e-11  Score=98.24  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=50.2

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHH
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQ  196 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve  196 (340)
                      .+++.|+||++.+.+|+.+ +|||+||..||.+|+....     ..||.||..+..   ...+..+.+++.
T Consensus        21 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~l~~~i~   85 (116)
T 1rmd_A           21 VKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMG-----SYCPSCRYPCFPTDLESPVKSFLNILN   85 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             cCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCc-----CcCCCCCCCCCHhhccccHHHHHHHHH
Confidence            3578999999999999998 9999999999999998743     589999999875   234455544443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.13  E-value=2.6e-11  Score=87.34  Aligned_cols=49  Identities=20%  Similarity=0.546  Sum_probs=42.0

Q ss_pred             CCceeccccc-cccCcc----EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLN-IWHDVV----TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~-~~~~Pv----~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +++.|+||++ +|.+|+    .+ +|||+||..|+.+|+....     ..||.||..+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGA-----GNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTS-----SSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCC-----CcCCCCCCcccc
Confidence            5689999999 999995    45 9999999999999986543     589999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.11  E-value=3.8e-11  Score=108.83  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCC--CCccccc--cCcchHHHHHHHHHH
Q 019461          124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPH--CRAVVQF--VGRNHYLHNIEQSIL  199 (340)
Q Consensus       124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~~~~--~~~n~~l~~lve~~~  199 (340)
                      .+.....+++||||+++|.+||+...|||+||+.||..|+...    +...||+  |++.+..  +.+|..|.++++.+.
T Consensus       174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k  249 (267)
T 3htk_C          174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----TTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK  249 (267)
T ss_dssp             CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----SCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred             eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----CCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence            3444568899999999999999865999999999999999753    2478999  9998766  889999999998875


Q ss_pred             Hh
Q 019461          200 QA  201 (340)
Q Consensus       200 ~~  201 (340)
                      ..
T Consensus       250 ~r  251 (267)
T 3htk_C          250 MK  251 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=2.6e-11  Score=87.96  Aligned_cols=49  Identities=29%  Similarity=0.805  Sum_probs=42.9

Q ss_pred             ccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          128 DIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ..+.+.|+||++.|.+|       +.+ +|||.||..||.+|+...      ..||.||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHC------SSCTTTCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcC------CCCCCCCCccC
Confidence            45788999999999988       666 999999999999999875      48999998865

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.09  E-value=5.9e-11  Score=86.06  Aligned_cols=50  Identities=34%  Similarity=0.850  Sum_probs=43.3

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ++...|+||++.+.+|+.+++|||.||..|+.+|+...      ..||.||+.+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------PTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------CSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------CcCcCCChhhHh
Confidence            45679999999999985555999999999999999865      389999998765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.08  E-value=2e-11  Score=101.87  Aligned_cols=51  Identities=20%  Similarity=0.434  Sum_probs=44.5

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV  182 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~  182 (340)
                      ...++++.|+||+++|.+|+++ +|||+||..||.+|+....     ..||.||..+
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~-----~~CP~Cr~~~   76 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGP-----QNCAACVHEG   76 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSC-----EECHHHHHTT
T ss_pred             ccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCC-----CCCCCCCCcc
Confidence            3445789999999999999998 9999999999999997543     5899999875

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.08  E-value=4.7e-11  Score=85.26  Aligned_cols=48  Identities=29%  Similarity=0.837  Sum_probs=42.4

Q ss_pred             CCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +.+.|+||++.+.+|       +.+ +|||.||..|+.+|+...      ..||.||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcC------CCCCCCCccCCc
Confidence            568999999999987       666 999999999999999875      489999998764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.07  E-value=5.7e-11  Score=101.99  Aligned_cols=63  Identities=22%  Similarity=0.462  Sum_probs=52.8

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHH
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQ  196 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve  196 (340)
                      ..+.+.|+||+++|.+|+++ +|||+||..|+.+|+..+.     ..||.||..+..  +.++..+.+++.
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~~~~i~   79 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-----HKCPVDNEILLENQLFPDNFAKREIL   79 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             CCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhCC-----CCCCCCccCcchhhhhhhHHHHHHHh
Confidence            44789999999999999998 9999999999999998653     489999998876  456666666554

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=5.7e-11  Score=83.22  Aligned_cols=48  Identities=31%  Similarity=0.829  Sum_probs=40.2

Q ss_pred             cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ...+.+.|+||++.+.+|+.+ +|||+||..||.+|+....   ....||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLE---RDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSC---CSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcC---CCCCCCCC
Confidence            345789999999999999998 9999999999999976421   24689988

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.03  E-value=4e-11  Score=83.92  Aligned_cols=46  Identities=28%  Similarity=0.714  Sum_probs=40.5

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .++++|+||++.|.+|+++ +|||+||..|+..|         ...||.||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~---------~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS---------GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS---------SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEc-CCCCcccHHHHccC---------CCCCCcCCcEeec
Confidence            4789999999999999998 99999999999762         2589999998765

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.03  E-value=1.2e-10  Score=80.62  Aligned_cols=47  Identities=30%  Similarity=0.679  Sum_probs=40.4

Q ss_pred             CCceeccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ++..|+||++.|.+    ++.+ +|+|.||..|+.+|+...      ..||.||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC------CcCCCCCCcCC
Confidence            56789999999966    5555 999999999999999875      48999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.03  E-value=8.4e-11  Score=81.53  Aligned_cols=48  Identities=33%  Similarity=0.784  Sum_probs=41.3

Q ss_pred             cCCceeccccccccC---ccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWHD---VVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~---Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ++...|+||++.|.+   ++.+ + |+|.||..|+.+|++..      ..||.||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~w~~~~------~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFL-PRCGHGFHAECVDMWLGSH------STCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEEC-SSSCCEECTTHHHHTTTTC------CSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEEC-CCCCCcccHHHHHHHHHcC------CcCcCCCCEeE
Confidence            467899999999987   6777 7 99999999999999764      48999998764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.01  E-value=1.5e-10  Score=86.73  Aligned_cols=51  Identities=24%  Similarity=0.574  Sum_probs=41.6

Q ss_pred             ccCCceecccccccc--CccEeCC--CCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWH--DVVTVAP--CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~--~Pv~l~p--CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+++++||||++.+.  +++.+ |  |||+||..|+.+++...     ...||.||+.+..
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~~-----~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTDE-----NGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTSS-----CSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhcC-----CCCCCCCCCccCC
Confidence            457899999999884  45555 6  99999999999987543     3689999998875

>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*

Probab=99.01  E-value=1.1e-09  Score=101.51  Aligned_cols=75  Identities=11%  Similarity=0.011  Sum_probs=59.9

Q ss_pred             ceeEeeCCceEEecc-------cccCC-ccccceEEEEEeCC---------CCeEEEEec-cCCceEeccEecCCCceee
Q 019461           28 ADVDISSNEVVICSE-------ITSSS-SDKHEWCKITRNSD---------LHSAKMQNK-SSNAILVDDTMVQNEEVVD   89 (340)
Q Consensus        28 ~~~~l~~~~~~iGr~-------~~~~~-~vS~~H~~i~~~~~---------~~~~~i~D~-StNgt~vng~~i~~~~~~~   89 (340)
                      ..+.|..++++|||.       |.+++ .|||+||.|.++..         ...++|+|| |+|||||||++|... .+.
T Consensus        14 kr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~-~~~   92 (325)
T 3huf_A           14 KSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQN-GDS   92 (325)
T ss_dssp             CCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTT-CEE
T ss_pred             eEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCc-eee
Confidence            456777778999992       46677 99999999988631         235999999 999999999999754 455


Q ss_pred             c-cCCCeeccCCCCc
Q 019461           90 I-KCGTEIIPGPDRE  103 (340)
Q Consensus        90 l-~~gd~I~lg~~~~  103 (340)
                      | .+||+|.+|....
T Consensus        93 L~~dgd~I~fG~~~~  107 (325)
T 3huf_A           93 YKEKDLKIQLGKCPF  107 (325)
T ss_dssp             ECSSEEEEEETTCSS
T ss_pred             ecCCCCEEEecCCcc
Confidence            5 5799999997654

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.2e-10  Score=84.77  Aligned_cols=48  Identities=31%  Similarity=0.831  Sum_probs=42.0

Q ss_pred             cCCceeccccccccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .+...|+||++.|.++   +.+ +|+|.||..||.+|++...      .||.||+.+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~------~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANR------TCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCS------SCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCC------cCcCcCCcCC
Confidence            4678999999999887   666 9999999999999998753      8999998865

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.99  E-value=2.9e-10  Score=82.66  Aligned_cols=50  Identities=38%  Similarity=0.904  Sum_probs=41.8

Q ss_pred             ccCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+...|+||++.|.   .++.+ +|+|.||..||.+|+....      .||.||..+..
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~------~CP~Cr~~~~~   63 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNK------KCPICRVDIEA   63 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCS------BCTTTCSBSCS
T ss_pred             CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCC------CCcCcCccccC
Confidence            346789999999885   34555 9999999999999998764      79999998765

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.97  E-value=2e-10  Score=85.60  Aligned_cols=51  Identities=27%  Similarity=0.574  Sum_probs=42.3

Q ss_pred             ccCCceeccccccccCc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|+||++.|.++  +..++|+|.||..||.+|+...      ..||.||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------DSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------CSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------CcCcCcCCccCC
Confidence            34678999999999865  2334999999999999999754      489999998875

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.97  E-value=3.7e-10  Score=86.91  Aligned_cols=48  Identities=33%  Similarity=0.779  Sum_probs=41.9

Q ss_pred             cCCceeccccccccC---ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWHD---VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~---Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .++..|+||++.|.+   ++.+ +|+|.||..||..|+...      ..||.||..+.
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~------~~CP~Cr~~~~   88 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKS------GTCPVCRCMFP   88 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTT------CBCTTTCCBSS
T ss_pred             CCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcC------CcCcCcCccCC
Confidence            467899999999987   7777 999999999999999765      38999998865

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=5.9e-10  Score=82.10  Aligned_cols=52  Identities=29%  Similarity=0.712  Sum_probs=42.7

Q ss_pred             cccCCceeccccccccCc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          127 IDIEHAKCCICLNIWHDV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...++..|+||++.|.++  +..++|+|.||..||.+|++...      .||.||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~------~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK------VCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS------BCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC------cCCCcCccccc
Confidence            344678999999999765  22339999999999999998753      89999998865

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.93  E-value=3.3e-10  Score=92.51  Aligned_cols=49  Identities=29%  Similarity=0.829  Sum_probs=43.6

Q ss_pred             cCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+++.|+||++.|.+|       +.+ +|||+||..||.+|++...      .||.||+.+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~------~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNAN------TCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCS------BCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCC------CCCCCCCcCcc
Confidence            4679999999999999       777 9999999999999997653      89999998764

>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}

Probab=98.92  E-value=2.9e-09  Score=82.06  Aligned_cols=76  Identities=18%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CceeEeeCC-ceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCc-eEeccEecCCCceeeccCCCeeccC
Q 019461           27 FADVDISSN-EVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNA-ILVDDTMVQNEEVVDIKCGTEIIPG   99 (340)
Q Consensus        27 ~~~~~l~~~-~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNg-t~vng~~i~~~~~~~l~~gd~I~lg   99 (340)
                      .+.+.|..+ .+.|||    ++.+++ .||+.||.|.+..++  .++.. |+|| +||||+++   +.+.|.+||.|   
T Consensus        12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G--~~~l~-S~nGtVFVNGqrv---~~~~I~~gDtI---   82 (102)
T 3uv0_A           12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG--VVRLA-ALVGKIFVNDQEE---TVVDIGMENAV---   82 (102)
T ss_dssp             SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT--EEEEE-ESSSCEEETTEEE---SEEEECGGGCB---
T ss_pred             cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc--eEEEE-eccCcEEECCEEe---eeEEccCCccc---
Confidence            455666554 499999    577888 999999999998766  55544 9999 49999999   47899999987   


Q ss_pred             CCCcceecccccccc
Q 019461          100 PDREVYLNFRFKVVP  114 (340)
Q Consensus       100 ~~~~~~~~y~f~i~s  114 (340)
                         ++.+.+.|..++
T Consensus        83 ---~g~v~lrFGnve   94 (102)
T 3uv0_A           83 ---AGKVKLRFGNVE   94 (102)
T ss_dssp             ---TTEEEEEETTEE
T ss_pred             ---ccEEEEEecCEE
Confidence               444555554443

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.1e-10  Score=85.25  Aligned_cols=49  Identities=35%  Similarity=0.946  Sum_probs=42.5

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|+||++.+.+ +.+ +|+|.||..|+.+|+...      ..||.||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~   60 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDRH------RNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCCC------SSCHHHHHCTTC
T ss_pred             CCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHCc------CcCCCcCCcccC
Confidence            3467899999999999 777 999999999999998743      589999988765

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.89  E-value=2.4e-10  Score=84.57  Aligned_cols=47  Identities=34%  Similarity=0.651  Sum_probs=41.7

Q ss_pred             cccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          127 IDIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ...+++.|+||++.+.+|+.+ ||||. ||..|+..|          ..||.||+.+..
T Consensus        20 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~   67 (74)
T 4ic3_A           20 RLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV----------DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC----------SBCTTTCCBCSE
T ss_pred             cCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC----------ccCCCcCcCccC
Confidence            445778999999999999999 99999 999999887          279999998875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1.7e-09  Score=81.41  Aligned_cols=49  Identities=35%  Similarity=0.724  Sum_probs=40.4

Q ss_pred             CCceeccccccccC--------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHD--------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~--------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ++..|+||++.|.+              ++.+.+|+|.|+..||.+|+....      +||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~------~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------RCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC------BCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC------CCCCcCCCcch
Confidence            56789999999876              556635999999999999998754      89999998653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.82  E-value=1.9e-09  Score=86.13  Aligned_cols=54  Identities=20%  Similarity=0.513  Sum_probs=41.8

Q ss_pred             CCceeccccccccCcc-----------------EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDVV-----------------TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv-----------------~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+..|+||++.|.+|.                 .+++|+|.||..||..|+.... ......||.||+.+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCC
Confidence            4569999999997764                 1449999999999999996432 1124689999998765

>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}

Probab=98.80  E-value=2.2e-08  Score=86.96  Aligned_cols=91  Identities=20%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             ccEEEEeCCC-----CCceeEeeCCceEEec-------ccccCC-ccccceEEEEEeCCC---CeEEEEeccCCceEecc
Q 019461           16 IWAKLEPSDS-----RFADVDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDL---HSAKMQNKSSNAILVDD   79 (340)
Q Consensus        16 ~~~~L~~~~~-----~~~~~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~---~~~~i~D~StNgt~vng   79 (340)
                      .-+.|+.+++     ..-.+.|..+.++|||       ||.+.+ .|+..||.|..+.++   ..++|...+.+.|||||
T Consensus        67 ~~PhLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG  146 (184)
T 4egx_A           67 KTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG  146 (184)
T ss_dssp             SSCEEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETT
T ss_pred             CCceEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcC
Confidence            4567888765     2234578888999998       688988 999999999987543   35888999999999999


Q ss_pred             EecCCCceeeccCCCeeccCCCCcceecccccc
Q 019461           80 TMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKV  112 (340)
Q Consensus        80 ~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i  112 (340)
                      ++|.  ..+.|.+||+|.+|.    .-.|.|..
T Consensus       147 ~~I~--~~~~L~~GDrI~lG~----~h~Frfn~  173 (184)
T 4egx_A          147 KKVT--EPSILRSGNRIIMGK----SHVFRFNH  173 (184)
T ss_dssp             EECC--SCEECCTTCEEEETT----TEEEEEEC
T ss_pred             EEcc--ccEEcCCCCEEEECC----CCEEEECC
Confidence            9996  468999999999997    23466654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=1.7e-09  Score=80.14  Aligned_cols=46  Identities=35%  Similarity=0.683  Sum_probs=39.8

Q ss_pred             ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+.+.|+||++.+.+|+.+ ||||. ||..|+.+.          ..||.||..+..
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~   68 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV----------DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC----------SBCTTTCCBCCC
T ss_pred             CCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC----------CCCccCCceecC
Confidence            34678999999999999998 99999 999999531          489999998876

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.74  E-value=4.3e-09  Score=81.35  Aligned_cols=52  Identities=21%  Similarity=0.569  Sum_probs=41.4

Q ss_pred             CCceeccccccccCccEe--CCCCCcccHhhHHHHHHhccC--CCCCcCCCC--CCcc
Q 019461          130 EHAKCCICLNIWHDVVTV--APCLHNFCNGCFSEWLRRSQE--KRSTVLCPH--CRAV  181 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l--~pCgH~FC~~Cl~~~~~~~~~--~~~~~~CP~--Cr~~  181 (340)
                      +.++|+||++.+..|.++  .+|||.||..|+..++...-.  ......||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            578999999999988664  379999999999999875311  112478999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.71  E-value=1.5e-09  Score=81.44  Aligned_cols=46  Identities=28%  Similarity=0.628  Sum_probs=40.3

Q ss_pred             ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+...|+||++.+.+++.+ ||||. ||..|+..|          ..||.||..+..
T Consensus        15 l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~   61 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL----------QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred             CCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence            34668999999999999999 99999 999999765          279999999876

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.70  E-value=6.3e-09  Score=84.78  Aligned_cols=52  Identities=29%  Similarity=0.777  Sum_probs=44.9

Q ss_pred             ccccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          126 SIDIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+.+.|+||++.|.+|       +.+ +|||.||..|+.+|++..      ..||.||..+..
T Consensus        67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~  125 (133)
T 4ap4_A           67 YIGSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH  125 (133)
T ss_dssp             BCSSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHC------SBCTTTCCBCCG
T ss_pred             ccCCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcC------CCCCCCCCcCCh
Confidence            3456789999999999887       777 999999999999999876      499999998764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.65  E-value=1.3e-08  Score=80.46  Aligned_cols=49  Identities=33%  Similarity=0.634  Sum_probs=40.7

Q ss_pred             cCCceeccccccccCc-----------------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWHDV-----------------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~P-----------------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      .++..|+||++.|.++                 +.+++|+|.|+..||.+|+...      .+||.||+.+.
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------SBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------CcCcCCCCcce
Confidence            3567899999999866                 4444999999999999999865      48999999854

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.62  E-value=1.5e-08  Score=72.70  Aligned_cols=49  Identities=27%  Similarity=0.488  Sum_probs=41.9

Q ss_pred             CCceeccccccccCccEe-CCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDVVTV-APCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l-~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ++..|+||++.+.+++.+ +||||. ||..|+.+|+..+      ..||.||+.+..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------KPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------CCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------CcCCCcCcchhc
Confidence            567899999999999753 399999 8999999998754      389999998865

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.59  E-value=2.5e-08  Score=95.70  Aligned_cols=50  Identities=30%  Similarity=0.682  Sum_probs=43.5

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .....|+||++.+.+|+.+ ||||.||..|+..|+....     ..||.||..+..
T Consensus       330 ~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~-----~~CP~CR~~i~~  379 (389)
T 2y1n_A          330 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEG-----QGCPFCRCEIKG  379 (389)
T ss_dssp             TSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTC-----SBCTTTCCBCCE
T ss_pred             CCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCC-----CCCCCCCCccCC
Confidence            3458999999999999999 9999999999999998432     589999998765

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.55  E-value=3.1e-08  Score=70.78  Aligned_cols=49  Identities=20%  Similarity=0.405  Sum_probs=41.2

Q ss_pred             CCceeccccccccCccEe-CCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDVVTV-APCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l-~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....|+||++...+++.+ +||||. ||..|+.+|++.+      ..||.||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------ASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------CBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------CcCCCcCchhhc
Confidence            456899999999998642 499998 9999999988754      489999998865

>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A

Probab=98.46  E-value=4.7e-07  Score=72.92  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             CceeEeeCCceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           27 FADVDISSNEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        27 ~~~~~l~~~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      ...+.|..+.++||.     |+.+.| .||+.||+|.+..++  |+|. -|+||||+||+++..+.  .|.+|+.+.+|.
T Consensus        16 G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g--~~L~-~s~ngt~vdG~~v~~~~--~L~~g~~l~lG~   90 (123)
T 4a0e_A           16 GVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG--IRLT-DSAEPLLQEGLPVPLGT--LLRAGSCLEVGF   90 (123)
T ss_dssp             TCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE--EEEE-EESSCCEETTEECCTTC--BCCTTSCEEETT
T ss_pred             CcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe--EEEE-eccCCEEECCEEccccc--ccCCCCEEEEcc
Confidence            456789999999999     577888 999999999998776  9997 79999999999977653  889999998886

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1e-07  Score=69.22  Aligned_cols=46  Identities=35%  Similarity=0.779  Sum_probs=39.6

Q ss_pred             ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+...|.||++...+++.+ ||||. ||..|+..    .      ..||.||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~----~------~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY----F------QQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH----C------SSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc----C------CCCCCCCcchhc
Confidence            34678999999999999888 99999 99999973    1      489999998876

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.43  E-value=1.1e-07  Score=67.41  Aligned_cols=48  Identities=13%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+.|+|+++++.+||.+.++||+|++.||.+|+....      +||..++.+..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~------~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------NDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------BCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC------CCcCCcCCCCh
Confidence            4789999999999988757999999999999998654      69999988765

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.40  E-value=4e-08  Score=79.01  Aligned_cols=48  Identities=33%  Similarity=0.649  Sum_probs=0.9

Q ss_pred             CCceeccccccccCc-----------------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          130 EHAKCCICLNIWHDV-----------------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       130 e~l~C~IC~~~~~~P-----------------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +.-.|+||++.|.++                 +.+++|+|.|+..||.+|+....      +||.||+.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~------~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ------VCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC------cCCCCCCeee
Confidence            456899999999763                 34348999999999999998754      8999998754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.35  E-value=9.7e-08  Score=90.77  Aligned_cols=48  Identities=29%  Similarity=0.649  Sum_probs=42.3

Q ss_pred             ccccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....+++.|+||++.+.+|+.+ ||||. ||..|+..|          ..||.||..+..
T Consensus       290 ~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~----------~~CP~CR~~i~~  338 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL----------RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC----------SBCTTTCCBCCE
T ss_pred             HhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC----------CcCCCCCCCccC
Confidence            3445789999999999999999 99999 999999876          279999998875

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=4.8e-07  Score=67.76  Aligned_cols=51  Identities=24%  Similarity=0.576  Sum_probs=42.0

Q ss_pred             cCCceeccccccc--cCccEeCCCC-----CcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIW--HDVVTVAPCL-----HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~--~~Pv~l~pCg-----H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .++..|.||++.+  .+++.+ ||.     |.|...||.+|+..+.    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~----~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSD----TRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHC----CSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCC----CCCCCCCCCeeec
Confidence            4667999999887  467765 996     9999999999998753    3589999998764

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=1.6e-05  Score=58.37  Aligned_cols=52  Identities=17%  Similarity=0.417  Sum_probs=41.3

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      +....|+||.+++..-..-..|+|.|...||.+|++...    ..+||.||.....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~----~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----EPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS----SCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC----CCCCCCCcCcCCC
Confidence            355689999999975554447999999999999997652    2589999987654

>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4

Probab=97.71  E-value=1.9e-05  Score=71.15  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             EeeCCceEEec----ccccCCccccceEEEEEeC-C-CCeEEEEec-cCCce-EeccEecCCCceeecc-CCCeeccCC
Q 019461           31 DISSNEVVICS----EITSSSSDKHEWCKITRNS-D-LHSAKMQNK-SSNAI-LVDDTMVQNEEVVDIK-CGTEIIPGP  100 (340)
Q Consensus        31 ~l~~~~~~iGr----~~~~~~~vS~~H~~i~~~~-~-~~~~~i~D~-StNgt-~vng~~i~~~~~~~l~-~gd~I~lg~  100 (340)
                      .+....++|||    +|.+++.   .|+.|.++- . .+.|+|+|+ |+||| ||||+++...  ..|. +||.|.+|.
T Consensus        88 ~~~~~~itIG~~~~~dI~l~~~---~~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~ig~  161 (238)
T 1wv3_A           88 PSIQDTMTIGPNAYDDMVIQSL---MNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYVEG  161 (238)
T ss_dssp             CSSCSEEEEESSTTSSEECTTC---SSCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEETT
T ss_pred             ecCCceEEEeCCCCCeEEeCCC---eeEEEEecccCcCCcEEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEECC
Confidence            34444899999    6888766   368777761 1 025999999 79996 9999999654  4799 999999875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.68  E-value=2.3e-05  Score=60.20  Aligned_cols=47  Identities=28%  Similarity=0.519  Sum_probs=38.5

Q ss_pred             eeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       133 ~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .|++|.-.+..-..++||.|.||.+|+..|.++..     ..||.|+..+..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~-----k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD-----KMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC-----CBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC-----CCCcCcCCeeee
Confidence            58888887765545559999999999999987654     589999999876

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.46  E-value=0.00012  Score=51.52  Aligned_cols=50  Identities=26%  Similarity=0.508  Sum_probs=40.3

Q ss_pred             cCCceeccccccccCccEeCCCCC-----cccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLH-----NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH-----~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      ++...|.||++...++..+ ||.+     .|...||.+|+..+.    ...||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~----~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISR----NTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHT----CSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCC----CCccCCCCCeee
Confidence            4677999999987778765 9764     899999999998643    368999998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.42  E-value=8.9e-05  Score=57.42  Aligned_cols=33  Identities=27%  Similarity=0.606  Sum_probs=28.0

Q ss_pred             CCceecccccc-ccCccE--eCCCCCcccHhhHHHHH
Q 019461          130 EHAKCCICLNI-WHDVVT--VAPCLHNFCNGCFSEWL  163 (340)
Q Consensus       130 e~l~C~IC~~~-~~~Pv~--l~pCgH~FC~~Cl~~~~  163 (340)
                      +++.|+||.+. +.+|+.  + .|+|+||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence            57899999975 778887  6 999999999998743

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.89  E-value=0.0004  Score=65.15  Aligned_cols=57  Identities=28%  Similarity=0.626  Sum_probs=41.4

Q ss_pred             ccCCceeccccccccC----ccE---eCCCCCcccHhhHHHHHHhccCCC-----CCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHD----VVT---VAPCLHNFCNGCFSEWLRRSQEKR-----STVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~----Pv~---l~pCgH~FC~~Cl~~~~~~~~~~~-----~~~~CP~Cr~~~~~  184 (340)
                      .+....|+||...+.+    |..   ...|+|.|...||.+|++......     -...||.||+++..
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4567789999999876    311   126999999999999998643111     12479999998764

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.45  E-value=0.0024  Score=67.35  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             cCCceeccccccccCccEeCCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS  204 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~  204 (340)
                      -+++.|||-++++.|||++ |-| ++|=+..|.+|+...      .+||.=|+++..  +.+|..|+..++.+...+..
T Consensus       889 P~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~------~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          889 PDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSD------STDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             CGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTC------CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             cHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcC------CCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            3689999999999999999 998 699999999999764      389999998876  88999999999999887654

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.91  E-value=0.06  Score=48.14  Aligned_cols=51  Identities=18%  Similarity=0.450  Sum_probs=40.7

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ....|.||.++...-+.-..|+|.|...|+..|++...    ...||.|+..-..
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~----~~~CP~C~~~W~~  229 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----EPRCPHCNDYWPH  229 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS----SCBCTTTCCBCCS
T ss_pred             CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC----CCCCCCCCCCCCC
Confidence            47789999999986666634999999999999987542    3689999886543

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=87.91  E-value=0.63  Score=29.23  Aligned_cols=30  Identities=13%  Similarity=0.098  Sum_probs=22.7

Q ss_pred             CCCccccccccccccccccCCccCCCCCcc
Q 019461          287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQP  316 (340)
Q Consensus       287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~  316 (340)
                      .+.+||..++.++|.++........|.+.|
T Consensus        12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A           12 RLKLYCKDDGTLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             SCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred             eeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence            588999999999999998655555554443

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=86.32  E-value=0.49  Score=34.53  Aligned_cols=48  Identities=29%  Similarity=0.568  Sum_probs=35.7

Q ss_pred             cCCceeccccccccCccEeCCC----CCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          129 IEHAKCCICLNIWHDVVTVAPC----LHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pC----gH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ...|.|.+|.+.|.+--.+ .|    +|.||..|-....+... ....+.||.=
T Consensus        13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~-~~~EvyCPSG   64 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQG-ATGEVYCPSG   64 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHH-SSSCCCCTTS
T ss_pred             CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcC-CCCcEECCCC
Confidence            3679999999999876554 44    69999999988877643 2345667754

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=85.37  E-value=0.99  Score=42.67  Aligned_cols=62  Identities=19%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             CceeccccccccCccEeCCCCCcccHhh--HHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHH
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGC--FSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQ  196 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~C--l~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve  196 (340)
                      .|.||+=+..+..|+.-..|.|.-|.+-  +.....+    .+...||+|.+.+..  +..+..+..+++
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~----~~~W~CPIC~k~~~~~dL~ID~~~~~IL~  314 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ----IPTWQCPVCQIDIALENLAISEFVDDILQ  314 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH----SCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhc----CCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence            5899999999999999989999966543  3332222    346899999988765  777777777664

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=85.11  E-value=0.76  Score=31.67  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             CCCccccccccccccccccCCccCCCCCcccc
Q 019461          287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQPMC  318 (340)
Q Consensus       287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~~  318 (340)
                      .+.+||..|+.++|.++.-...+-.|.+.|+-
T Consensus        18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~   49 (64)
T 2d8u_A           18 KINIYCLTCEVPTCSMCKVFGIHKACEVAPLQ   49 (64)
T ss_dssp             CCCSEESSSCCCCCSHHHHSSSTTSSCEECTT
T ss_pred             ccceEcCcCCceeCccccCCCcCCCCCeeCHH
Confidence            58899999999999999755445555554443

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=83.43  E-value=1.5  Score=41.27  Aligned_cols=63  Identities=14%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             CceeccccccccCccEeCCCCCcccHhh--HHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461          131 HAKCCICLNIWHDVVTVAPCLHNFCNGC--FSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS  197 (340)
Q Consensus       131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~C--l~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~  197 (340)
                      .|.||+=...+..|+....|.|.-|.+-  +......    .+...||.|.+.+..  +..+..+.+++..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~----~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK----KPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH----SCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh----CCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            5789999999999999889999955543  3333222    346899999998865  7778777777654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=80.10  E-value=0.37  Score=31.37  Aligned_cols=28  Identities=14%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             CCCccccccccccccccccCCccCCCCC
Q 019461          287 SVPQHCLGCDRAFCGAYWHAQMVARSDS  314 (340)
Q Consensus       287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~  314 (340)
                      .+++||..|+.++|.++.-...+..|.+
T Consensus        16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~   43 (48)
T 3ddt_A           16 KINIYCLTCEVPTCSMCKVFGIHKACEV   43 (48)
T ss_dssp             BCCEEETTTTEEECHHHHHHSTTTTSCE
T ss_pred             cccEEcCCCCeeEcccccCCCcCCCCcE
Confidence            5889999999999999864333444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	7e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-07
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	7e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-05
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	5e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-05
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	6e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	0.002

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185
           +C ICL    +     PCLH FC  C + W+R++        CP C+  V+ V
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT------CPLCKVPVESV 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 7e-08
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 122 QLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181
           +L   +      C IC     DV    PC H  C  C + W     +      CP CR  
Sbjct: 14  ELYCEMGSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQG-----CPFCRCE 67

Query: 182 VQ 183
           ++
Sbjct: 68  IK 69

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           +  +C ICL +  + V+   C H FC  C  + L + +       CP C+  +    +  
Sbjct: 20  KILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQ---CPLCKNDITKRSLQE 75

Query: 188 NHYLHNIEQSILQAHSSLRR 207
           +     + + +L+   + + 
Sbjct: 76  STRFSQLVEELLKIICAFQL 95

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 40.6 bits (95), Expect = 7e-06
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 9/56 (16%)

Query: 130 EHAKCCICLNIWHD---VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
           +  +C +CL    D      +  C H F   C   WL           CP CR  V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST------CPLCRLTV 53

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
           ++   C IC +I  D V    C H FC  C    L+          CP CR 
Sbjct: 21  VKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSY-----CPSCRY 66

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGR 187
           +  +C  C NI  + V +  C H FC+ C S+ +           CP C        +  
Sbjct: 21  KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQDLKI 72

Query: 188 NHYLHNIEQSILQAHSSLRRSD 209
           N  L ++ Q   +  + L  ++
Sbjct: 73  NRQLDSMIQLCSKLRNLLHDNE 94

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 22/76 (28%), Gaps = 23/76 (30%)

Query: 126 SIDIEHAKCCICLNIWHD-----------------VVTVAPCLHNFCNGCFSEWLRRSQE 168
           + DI    C IC N   D                  V    C H F   C S WL+  Q 
Sbjct: 16  AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 75

Query: 169 KRSTVLCPHCRAVVQF 184
                 CP      +F
Sbjct: 76  ------CPLDNREWEF 85

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 6e-05
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 10/55 (18%)

Query: 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
           + +  +C  C         + PCLH  C+GC      +         CP C+A  
Sbjct: 3   EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQ---------CPICQAPW 47

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 1/54 (1%)

Query: 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
                          V  +  C H F   C         +  S + CP C+ + 
Sbjct: 40  GYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS-LQCPSCKTIY 92

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 9/59 (15%)

Query: 129 IEHAKCCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
           ++   C  C    +      + V  C H  C  C      R         CP C   ++
Sbjct: 1   MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGN-----CPECGTPLR 54

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
           E+ +C I L +  D V +      +      +WL        T        +   +  N+
Sbjct: 7   EYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGH---KTCPKSQETLLHAGLTPNY 62

Query: 190 YLHNIEQSILQAH 202
            L ++     +++
Sbjct: 63  VLKSLIALWCESN 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1gxca_	116	Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1lgpa_	113	Cell cycle checkpoint protein Chfr {Human (Homo sa	99.77
d2brfa1	101	Polynucleotide kinase 3'-phosphatase {Human (Homo	99.6
d1dmza_	158	Phosphotyrosine binding domain of Rad53 {Baker's y	99.6
d2ff4a3	99	Probable regulatory protein EmbR, C-terminal domai	99.58
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.58
d2piea1	127	Ubiquitin ligase protein RNF8 {Human (Homo sapiens	99.55
d1uhta_	118	FHA domain containing protein At4G14490 {Thale cre	99.55
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.54
d1g6ga_	127	Phosphotyrosine binding domain of Rad53 {Baker's y	99.53
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.49
d1mzka_	122	Kinase associated protein phosphatase {Thale cress	99.49
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.42
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.39
d2affa1	98	Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.32
d2g1la1	102	Kinesin-like protein kif1c {Human (Homo sapiens) [	99.31
d1wlna1	107	Afadin {Mouse (Mus musculus) [TaxId: 10090]}	99.29
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.18
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.17
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.13
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.07
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.04
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.95
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.73
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.61
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.56
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.03
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	94.15
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	90.8
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	89.32
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	88.95
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	87.37
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	84.35

>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Chk2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.8e-20  Score=147.03  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=81.2

Q ss_pred             ccEEEEeCCCCCceeEeeCCceEEec----ccccCC----------ccccceEEEEEeCCC---CeEEEEeccCCceEec
Q 019461           16 IWAKLEPSDSRFADVDISSNEVVICS----EITSSS----------SDKHEWCKITRNSDL---HSAKMQNKSSNAILVD   78 (340)
Q Consensus        16 ~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~----------~vS~~H~~i~~~~~~---~~~~i~D~StNgt~vn   78 (340)
                      +||||+|+...++.+.|.+++++|||    ++.+++          .|||.||+|.++.+.   ..++|.|+|+||||||
T Consensus         1 PwgrL~~~~~~~~~~~L~~~~~~iGR~~~cdi~l~~~~~~~~~~~~~ISr~H~~I~~~~~~~~~~~~~i~d~S~NGT~vN   80 (116)
T d1gxca_           1 PWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVN   80 (116)
T ss_dssp             CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCEEET
T ss_pred             CeEEEEecCCCCceEEeCCCCEEeeeCCCCCeEecCCccccccccceEecceEEEEEecccCCCCEEEEECCCccCceEC
Confidence            69999999999999999999999999    566654          499999999987432   3488999999999999


Q ss_pred             cEecCCCceeeccCCCeeccCCCCcceeccccccc
Q 019461           79 DTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVV  113 (340)
Q Consensus        79 g~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i~  113 (340)
                      |++|++++.+.|++||+|.+|...  ...|.|..+
T Consensus        81 ~~~i~~~~~~~L~~gD~I~ig~~~--~~~f~f~d~  113 (116)
T d1gxca_          81 TELVGKGKRRPLNNNSEIALSLSR--NKVFVFFDL  113 (116)
T ss_dssp             TEECCTTCEEECCTTEEEEESSTT--CEEEEEEET
T ss_pred             CEEcCCCCEEECCCCCEEEECCCE--eEEEEEEEc
Confidence            999999999999999999999753  334555544

>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Cell cycle checkpoint protein Chfr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=142.01  Aligned_cols=100  Identities=12%  Similarity=0.244  Sum_probs=83.6

Q ss_pred             cccEEEEeCCC--CCceeEeeCCceEEec----ccccC-C-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCc
Q 019461           15 EIWAKLEPSDS--RFADVDISSNEVVICS----EITSS-S-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEE   86 (340)
Q Consensus        15 ~~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~-~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~   86 (340)
                      ++||+|+.+++  ..+.+.+.++.++|||    ++.+. + .||+.||+|.++.++..+++.|+|+|||||||++|.+++
T Consensus         2 ~pwg~Li~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~d~~~iSr~Ha~I~~~~~~~~~~~~d~S~nGT~vNg~~i~~~~   81 (113)
T d1lgpa_           2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQ   81 (113)
T ss_dssp             CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSS
T ss_pred             CCeEEEEEECCCCCceEEEeCCCCEeeCCCCCCCeEecCCCCcChHHeEEEEccceeeEEecCCCceeeEECCEEcCCCc
Confidence            68999999876  3456788999999999    57775 4 799999999998766678889999999999999999999


Q ss_pred             eeeccCCCeeccCCCC---cceecccccccc
Q 019461           87 VVDIKCGTEIIPGPDR---EVYLNFRFKVVP  114 (340)
Q Consensus        87 ~~~l~~gd~I~lg~~~---~~~~~y~f~i~s  114 (340)
                      .+.|.+||+|.++...   ...+.|.|+.++
T Consensus        82 ~~~L~~GD~I~i~~~~~~~~~~~~f~~e~~~  112 (113)
T d1lgpa_          82 TCPLQTGDVIYLVYRKNEPEHNVAYLYESLS  112 (113)
T ss_dssp             CCCCCTTCEEEEECCSSCGGGCEEEECCCSC
T ss_pred             eEECCCCCEEEEeecCCCccccEEEEEEccC
Confidence            9999999999998654   345677777653

>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Polynucleotide kinase 3'-phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=118.68  Aligned_cols=80  Identities=4%  Similarity=0.020  Sum_probs=65.7

Q ss_pred             CCCCCceeEe--eCCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCCeec
Q 019461           23 SDSRFADVDI--SSNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEII   97 (340)
Q Consensus        23 ~~~~~~~~~l--~~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd~I~   97 (340)
                      ..+..+.+.+  ....++|||  +..+.+ .|||.||+|.++..+..|++.|+|+|||||||+++.++..+.|.+||+|.
T Consensus         8 p~g~~p~i~l~~~~~~~~iGR~~~~~i~d~~vSr~Ha~i~~~~~~~~~~v~~~s~Ngt~vNg~~l~~~~~~~L~~GD~i~   87 (101)
T d2brfa1           8 PPGEAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLY   87 (101)
T ss_dssp             STTSSCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEEEETTCEEE
T ss_pred             cCCCCCcEEEecCCCeEEcccCccccccCCCcChhheEEEeccCceeEEEEcCCCcceEEEEEEeccceeeECCCCCEEE
Confidence            3344555544  456799999  566677 99999999999876667899999999999999999999999999999999


Q ss_pred             cCCCC
Q 019461           98 PGPDR  102 (340)
Q Consensus        98 lg~~~  102 (340)
                      ++...
T Consensus        88 l~~~~   92 (101)
T d2brfa1          88 LVNGL   92 (101)
T ss_dssp             EETTE
T ss_pred             EcCCe
Confidence            98743

>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=2.4e-15  Score=126.04  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             cccEEEEeCCCC--CceeEeeCC--ceEEec----ccccCC-ccccceEEEEEeCC-------------CCeEEEEeccC
Q 019461           15 EIWAKLEPSDSR--FADVDISSN--EVVICS----EITSSS-SDKHEWCKITRNSD-------------LHSAKMQNKSS   72 (340)
Q Consensus        15 ~~~~~L~~~~~~--~~~~~l~~~--~~~iGr----~~~~~~-~vS~~H~~i~~~~~-------------~~~~~i~D~St   72 (340)
                      .-|..|.|+.+.  ...+.|.++  .++|||    ++.+++ .||+.||.|.++..             ...++|.|+|+
T Consensus         3 ~~f~~L~~l~~~~~~~~i~i~~~~~~~~iGR~~~~d~~i~~~~vS~~H~~I~~~~~~~~~~~~~~~~~~~~~~~l~D~S~   82 (158)
T d1dmza_           3 GRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGT   82 (158)
T ss_dssp             SCCEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECST
T ss_pred             ceeEEEEEccCCCcceeEEEccCCCcEEecCCcCccEEECCCcccCcceEEEEeccccccccccccccCCCcEEEEecCC
Confidence            468899998763  456777664  699999    678888 99999999988631             23599999999


Q ss_pred             CceEeccEecCCCceeeccCCCeeccCCCCcc
Q 019461           73 NAILVDDTMVQNEEVVDIKCGTEIIPGPDREV  104 (340)
Q Consensus        73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~~~~~  104 (340)
                      |||||||++|++++.+.|.+||+|.++.+...
T Consensus        83 NGt~vN~~~~~~~~~~~l~~gD~i~~~~~~~~  114 (158)
T d1dmza_          83 NVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNN  114 (158)
T ss_dssp             TCCEETTEECCSSEEEECCSSCCEESCCCTTT
T ss_pred             CCeEECCEEcCCCceEECCCCCEEEEccCCCc
Confidence            99999999999999999999999999866443

>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=3.3e-15  Score=115.58  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             cccEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCcee
Q 019461           15 EIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVV   88 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~   88 (340)
                      ++++.|....+ ...+.|.++.++|||    +|.+++ .||+.||+|.++++.  |+|+|+ |+|||||||++|.  +.+
T Consensus         4 ~~~~~l~~~~~-G~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~--~~i~Dl~S~nGt~vNg~~i~--~~~   78 (99)
T d2ff4a3           4 QAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTN--YVINDLRSSNGVHVQHERIR--SAV   78 (99)
T ss_dssp             BCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSC--EEEEECSCSSCCEETTEECS--SEE
T ss_pred             ccEEEEEcCCC-CCEEEECCCCEEEeeCcCCCEEECCccccceeEEEEEeCCE--EEEEECCCcCCCeECCEEcC--Cce
Confidence            67788887766 367899999999999    688888 999999999998665  999999 9999999999996  367


Q ss_pred             eccCCCeeccCC
Q 019461           89 DIKCGTEIIPGP  100 (340)
Q Consensus        89 ~l~~gd~I~lg~  100 (340)
                      .|.+||+|.+|.
T Consensus        79 ~L~~Gd~i~iG~   90 (99)
T d2ff4a3          79 TLNDGDHIRICD   90 (99)
T ss_dssp             EECTTCEEEETT
T ss_pred             ECCCCCEEEECC
Confidence            899999999987

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.8e-16  Score=114.84  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS  203 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~  203 (340)
                      ++|.||||+++|.+||++ +|||+||..||.+|+....     ..||.||..+..  +.+|..|+++|+.|++.++
T Consensus         6 ~~l~CpIc~~l~~dPv~~-~cGhtfc~~ci~~~l~~~~-----~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           6 DYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-----HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             STTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC-----SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             ccccCcCcCchhhhhccc-CCcCeecHHHHHHHHhcCC-----ccCCCccccccccccccHHHHHHHHHHHHHHCC
Confidence            789999999999999998 9999999999999997653     579999998875  7889999999999988765

>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Ubiquitin ligase protein RNF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.3e-15  Score=117.82  Aligned_cols=99  Identities=15%  Similarity=0.192  Sum_probs=76.5

Q ss_pred             cccEEEEeCCCCCceeEe-eCCceEEec----ccccCC-----ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecC
Q 019461           15 EIWAKLEPSDSRFADVDI-SSNEVVICS----EITSSS-----SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQ   83 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l-~~~~~~iGr----~~~~~~-----~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~   83 (340)
                      ..| .|.........+.| .+..++|||    ++.+++     .|||.||+|.++.++ .|+|+|+ |+|||||||.++.
T Consensus         4 ~~w-~L~r~g~~~~~~~l~~~~~~tiGR~~~~~~~l~~~~~~~~VSR~Ha~i~~~~~g-~~~l~D~~S~NGt~lNg~~l~   81 (127)
T d2piea1           4 RSW-CLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG-QWTIMDNKSLNGVWLNRARLE   81 (127)
T ss_dssp             EEE-EEEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTS-CEEEEECSCSSCEEETTEECC
T ss_pred             ceE-EEEEccCCCCeEEcCCCCEEEeccCCCccEEECCCCcccccchhheEEEECCCC-eEEEEECCCcCCeEECCEEcc
Confidence            357 56666655555544 566789999    466654     399999999987543 5999999 9999999999999


Q ss_pred             CCceeeccCCCeeccCCC--Ccceeccccccccc
Q 019461           84 NEEVVDIKCGTEIIPGPD--REVYLNFRFKVVPV  115 (340)
Q Consensus        84 ~~~~~~l~~gd~I~lg~~--~~~~~~y~f~i~s~  115 (340)
                      +++.+.|.+||.|.+|..  ......|.|+....
T Consensus        82 ~~~~~~L~~GD~I~iG~p~~~~~~~~f~~~~~~~  115 (127)
T d2piea1          82 PLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEE  115 (127)
T ss_dssp             TTCCEECCTTCEEEESCCCTTCSSCSEEEEEEEE
T ss_pred             CCceeEcCCCCEEEeCCCCCCCcceEEEEEeCcc
Confidence            999999999999999854  34456677765543

>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=8e-15  Score=116.98  Aligned_cols=84  Identities=19%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             ccEEEEeCCCC--CceeEeeC-CceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCC
Q 019461           16 IWAKLEPSDSR--FADVDISS-NEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNE   85 (340)
Q Consensus        16 ~~~~L~~~~~~--~~~~~l~~-~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~   85 (340)
                      +-.+|+...+.  ...+.|.. ..++|||     +|.+++ .||++||+|.++++.  |+|+|+ |+|||||||++|..+
T Consensus        11 p~l~L~v~~Gp~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~~~~--~~i~Dl~S~nGT~vng~~l~~~   88 (118)
T d1uhta_          11 PSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGN--WVIQDLGSSNGTLLNSNALDPE   88 (118)
T ss_dssp             CEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSSS--EEEECCCCSSCCEESSSBCCTT
T ss_pred             CcEEEEEEeCCCCCcEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEECCE--EEEEECCCcceeEECCEEcCCC
Confidence            34678776652  34567754 4688999     577888 999999999998766  999999 999999999999999


Q ss_pred             ceeeccCCCeeccCCC
Q 019461           86 EVVDIKCGTEIIPGPD  101 (340)
Q Consensus        86 ~~~~l~~gd~I~lg~~  101 (340)
                      ..+.|.+||+|.+|..
T Consensus        89 ~~~~L~~Gd~i~lG~~  104 (118)
T d1uhta_          89 TSVNLGDGDVIKLGEY  104 (118)
T ss_dssp             CEEECCTTEEEEETTT
T ss_pred             cEEECCCCCEEEECCE
Confidence            8999999999999974

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.54  E-value=1.5e-15  Score=112.30  Aligned_cols=68  Identities=19%  Similarity=0.355  Sum_probs=61.0

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~  202 (340)
                      .++|.|+||+++|.+||++ +|||+||+.||.+|+....     ..||.|+..+..  +.+|..|+++|+.|++.+
T Consensus         6 P~~l~CpIc~~~m~dPV~~-~cgh~fc~~ci~~~~~~~~-----~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~   75 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGH-----KTCPKSQETLLHAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTC-----CBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred             CccCCCcCcCchhhCceEc-cCCCcchHHHHHHHHHHCC-----CCCCcccccCCcccccchHHHHHHHHHHHHHh
Confidence            3789999999999999999 9999999999999997653     579999999876  788999999999998764

>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.5e-14  Score=116.85  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             cccEEEEeCCCCCceeEeeC-------------CceEEec----ccccCC--ccccceEEEEEeCCCCeEEEEeccCCce
Q 019461           15 EIWAKLEPSDSRFADVDISS-------------NEVVICS----EITSSS--SDKHEWCKITRNSDLHSAKMQNKSSNAI   75 (340)
Q Consensus        15 ~~~~~L~~~~~~~~~~~l~~-------------~~~~iGr----~~~~~~--~vS~~H~~i~~~~~~~~~~i~D~StNgt   75 (340)
                      ...+||+...+.++..+|..             ..++|||    ++.+.+  .||+.||+|.++.++ .+++.|.|+|||
T Consensus         3 ~~~~~l~~t~g~~p~~~L~~~~~~~~~~~~~~~~~~~iGR~~~~d~~l~d~~~VSr~Ha~i~~~~~~-~~~~d~~S~NGT   81 (127)
T d1g6ga_           3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG-NLLLNDISTNGT   81 (127)
T ss_dssp             EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS-CEEEEECCSSCC
T ss_pred             ceEEEEEecCCCCCcEEEEecCCceeEEEecCCccEEEccCcccCccCCCcchhhHHHHHeeecccE-EEEEECCCccee
Confidence            46788888888776654432             3479999    577754  799999999988654 456666699999


Q ss_pred             EeccEecCCCceeeccCCCeeccCCCC-cceecccccc
Q 019461           76 LVDDTMVQNEEVVDIKCGTEIIPGPDR-EVYLNFRFKV  112 (340)
Q Consensus        76 ~vng~~i~~~~~~~l~~gd~I~lg~~~-~~~~~y~f~i  112 (340)
                      ||||.++.++..+.|.+||+|.+|..- ...+.|.+.+
T Consensus        82 ~vNg~~l~~~~~~~L~~GD~I~iG~~~~~~~v~~~~~~  119 (127)
T d1g6ga_          82 WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI  119 (127)
T ss_dssp             EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred             EECCEEecCCCEEEcCCCCEEEECCCCCCceEEEEEEE
Confidence            999999999999999999999999753 3344454443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-15  Score=117.04  Aligned_cols=72  Identities=21%  Similarity=0.520  Sum_probs=60.4

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHh
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQA  201 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~  201 (340)
                      ..+.+.|.|+||+++|.+|+++ +|||+||..||.+|+....   +...||.||..+..  +..|..+.++++.+++.
T Consensus        16 ~~l~~~l~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~   89 (103)
T d1jm7a_          16 NAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKK---GPSQCPLCKNDITKRSLQESTRFSQLVEELLKI   89 (103)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSS---SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred             HhcccCcCCCccCchhCCeEEc-CCCCchhhHHHHHHHHHCC---CCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence            3445779999999999999998 9999999999999997643   34689999999875  78898888888877543

>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinase associated protein phosphatase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=9e-14  Score=111.43  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=69.8

Q ss_pred             cccEEEEeCCCCC--ceeEeeC-----CceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEe
Q 019461           15 EIWAKLEPSDSRF--ADVDISS-----NEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTM   81 (340)
Q Consensus        15 ~~~~~L~~~~~~~--~~~~l~~-----~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~   81 (340)
                      ..|-.|.-..+..  ..+.+..     ..++|||    ++.+++ .||+.||+|.++.+...|+|+|+ |+|||||||++
T Consensus         3 ~~~l~L~vi~Gp~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~~~~~~~v~DlgS~nGT~vNg~~   82 (122)
T d1mzka_           3 SSWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSHS   82 (122)
T ss_dssp             SEEEEEEECSSTTCSCEEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTEE
T ss_pred             CceEEEEEEECCCCCcEEEecCCCCCcCCEEecCCCCCCEEECCCCcCccceEEEEeCCCCEEEEeeCCCCCceEECCEE
Confidence            4677787655532  3344432     3489999    688888 99999999999887778999999 99999999999


Q ss_pred             cCC--------CceeeccCCCeeccCCC
Q 019461           82 VQN--------EEVVDIKCGTEIIPGPD  101 (340)
Q Consensus        82 i~~--------~~~~~l~~gd~I~lg~~  101 (340)
                      +..        +..+.|.+||+|.+|..
T Consensus        83 i~~~~~~~~~~g~~~~L~~gd~i~iG~~  110 (122)
T d1mzka_          83 ISHPDLGSRKWGNPVELASDDIITLGTT  110 (122)
T ss_dssp             SSCCCTTTCCCCCCEECCTTEEEECSSS
T ss_pred             CcccccccccCCceEEcCCCCEEEECCe
Confidence            964        45689999999999984

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-14  Score=111.51  Aligned_cols=69  Identities=25%  Similarity=0.468  Sum_probs=58.5

Q ss_pred             ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461          126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH  202 (340)
Q Consensus       126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~  202 (340)
                      ....+.++|+||+++|.+|+++.+|||+||..||.+|+.        ..||.||..+..  +..|..+.++++.+...+
T Consensus        17 ~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~   87 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (97)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             HhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--------ccccccCCcCchhhCcccHHHHHHHHHHHHHH
Confidence            334578999999999999998768999999999999974        259999988765  789999999998876543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=9.7e-14  Score=104.05  Aligned_cols=60  Identities=30%  Similarity=0.523  Sum_probs=48.5

Q ss_pred             CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHH
Q 019461          130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIE  195 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lv  195 (340)
                      +.+.|+||++.+.+|+++ +|||+||..||.+|++...     ..||.||.++..   ..+...+.+++
T Consensus        22 ~~l~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~-----~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVET-SCKHLFCRICILRCLKVMG-----SYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceec-CCCChhhHHHHHHHHhhCC-----CcCcccCCCCChhhccCHHHHHHHHh
Confidence            568999999999999998 9999999999999997543     479999998765   23444444444

>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Antigen ki-67
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.6e-12  Score=100.00  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=62.1

Q ss_pred             CceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           27 FADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        27 ~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      ...+.|..+.++|||    +|.+.+ .||+.||.|.++.+.  |+|+|+ |+|||||||+++..  .+.|.+||+|.+|.
T Consensus        15 g~~~~L~~~~~~IGr~~~~di~l~~~~is~~Ha~i~~~~~~--~~i~d~~s~ng~~vNg~~l~~--~~~L~~Gd~I~iG~   90 (98)
T d2affa1          15 GPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQE--AILHNFSSTNPTQVNGSVIDE--PVRLKHGDVITIID   90 (98)
T ss_dssp             EEEEECCSSEEEEESSTTSSEEECCTTSCSSBEEEEECSSC--EEEEECCSSSCCEETTEECSS--CEEECTTCEEEETT
T ss_pred             ceEEEECCCCEEEeeCCCCCEEeCCCCcCceeEEEEEeCCE--EEEEECCCcccceECCEECCC--ceECCCCCEEEECC
Confidence            356789999999999    688888 999999999998665  999999 79999999999954  47899999999986

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6e-13  Score=102.35  Aligned_cols=68  Identities=18%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             CCceeccccccccCccEeCCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461          130 EHAKCCICLNIWHDVVTVAPCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS  204 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~  204 (340)
                      ++|.||||+++|.+||++ +|+ |+||+.||.+|+..+.      .||.|++.+..  +.+|..|+++|+.|+..+.+
T Consensus        21 ~~f~CPI~~~lm~dPV~~-~~~~~ty~r~~I~~~l~~~~------~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQ------TDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             TTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSC------BCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             HHhCCcCchhHHHHHHhc-ccccchhhHHHHHHHHHhcC------CcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            689999999999999999 876 5899999999997653      89999999876  88999999999999987654

>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Kinesin-like protein kif1c
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3e-12  Score=99.08  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             eEeeCCceEEec---ccccCC-ccccceEEEEEeC--CCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           30 VDISSNEVVICS---EITSSS-SDKHEWCKITRNS--DLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        30 ~~l~~~~~~iGr---~~~~~~-~vS~~H~~i~~~~--~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      +.|.++.++|||   +|.+.+ .||+.||.|.+..  +...+++.|+ |+|||||||++|..  ++.|++||+|.+|.
T Consensus        19 y~l~~~~~~iGr~~~dI~l~~~~vs~~Ha~i~~~~~~~~~~~~i~d~~s~~gt~VNg~~i~~--~~~L~~gD~I~~G~   94 (102)
T d2g1la1          19 YHIKDGVTRVGQVDMDIKLTGQFIREQHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVTE--PLVLKSGNRIVMGK   94 (102)
T ss_dssp             EECCSEEEEEESSSCSEECCCTTCCSEEEEEEEEECTTSCEEEEEEECTTCCEEETTEECCS--CEECCTTCEEEETT
T ss_pred             EEcCCCcEECCCCCcCEEecccceeeeeeEEEEEEcCCCcEEEEecCCCCCCeEECCeEccc--eeEcCCCCEEEECC
Confidence            578889999999   788888 9999999998753  3346889998 89999999999963  68999999999997

>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.4e-12  Score=99.64  Aligned_cols=68  Identities=10%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             eeEeeCCceEEec------ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461           29 DVDISSNEVVICS------EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP  100 (340)
Q Consensus        29 ~~~l~~~~~~iGr------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~  100 (340)
                      .+.|.++.++|||      ||.+++ .||+.||+|.++.+.  ++|+|+ |+|||||||++|..  .+.|.+||+|.+|.
T Consensus        23 ~~~l~~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~--~~l~d~~s~~gt~vng~~v~~--~~~L~~gd~i~iG~   98 (107)
T d1wlna1          23 LYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGV--VTVTPRSMDAETYVDGQRISE--TTMLQSGMRLQFGT   98 (107)
T ss_dssp             EEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSC--EEEEESCSSSCEEETSCBCSS--CEEECTTCEEEETT
T ss_pred             EEEECCCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccc--cEEecCCCCcceEEccccccc--eeECCCCCEEEECC
Confidence            3478889999996      688888 999999999998765  999999 88999999999964  57899999999997

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.4e-12  Score=94.12  Aligned_cols=51  Identities=29%  Similarity=0.670  Sum_probs=43.9

Q ss_pred             ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      ..+...|+||++.+.+|+.+ +|||.||..||.+|+..+.     ..||.||..+..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~wl~~~~-----~~CP~Cr~~i~~   70 (79)
T d1fbva4          20 GSTFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEG-----QGCPFCRCEIKG   70 (79)
T ss_dssp             SCCTTBCTTTSSSBCCEECS-SSCCEECHHHHHHHHHTTC-----CSCTTTCCCCCC
T ss_pred             CCCCCCCccCCCcCCCeEEe-CCCCeeeHHHHHHHHHHCc-----CcCCCCCcCccC
Confidence            33456799999999999988 9999999999999997543     479999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=4.4e-12  Score=87.24  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=42.1

Q ss_pred             ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      |.|+||++++.+|+.+..|||+||+.||.+|++.+.      .||.||+.+..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~------~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------NDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------BCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc------CCCccCCcCCH
Confidence            679999999999998845999999999999999864      89999998764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.17  E-value=5.3e-12  Score=90.37  Aligned_cols=47  Identities=36%  Similarity=0.939  Sum_probs=41.6

Q ss_pred             ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      -.|+||++.+.+++.+++|||+||..|+.+|++.+.      .||.||+.+..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~------~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP------TCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC------STTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC------cCCCCCcchHh
Confidence            369999999999877679999999999999998764      89999998764

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.7e-12  Score=88.27  Aligned_cols=46  Identities=28%  Similarity=0.714  Sum_probs=39.9

Q ss_pred             cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+.|.|+||++.|.+|+++ ||||+||..|+.+|         ...||.||+.+..
T Consensus         4 ~~~l~C~IC~~~~~~p~~l-pCgH~fC~~Ci~~~---------~~~CP~Cr~~~~~   49 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS---------GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS---------SSSCSSCCSSSSC
T ss_pred             cCCCCCcccCcccCCCEEe-cCCCHHhHHHHHcC---------CCcCcCCCCcccC
Confidence            3568999999999999998 99999999999653         2589999998865

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.5e-11  Score=86.01  Aligned_cols=50  Identities=22%  Similarity=0.509  Sum_probs=39.2

Q ss_pred             CCceeccccccccC-c---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHD-V---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~-P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      |+..||||++.+.. +   +.+.+|||.||..||.+|+....     ..||.||+.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-----GNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-----SSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc-----CCCCCCCcCccc
Confidence            57899999987532 2   34449999999999999997543     479999998754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.04  E-value=3.6e-11  Score=82.23  Aligned_cols=50  Identities=30%  Similarity=0.686  Sum_probs=40.8

Q ss_pred             ccCCceeccccccccC---ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          128 DIEHAKCCICLNIWHD---VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~---Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +++...|+||++.|.+   .+.+.+|+|.||..|+.+|++.+.      .||.||+.+.
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~------~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------TCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC------SCSSSCCCSC
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC------cCCCCCCEeE
Confidence            4577889999999964   344536999999999999998754      8999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.2e-10  Score=78.56  Aligned_cols=47  Identities=21%  Similarity=0.507  Sum_probs=37.3

Q ss_pred             ceeccccccccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          132 AKCCICLNIWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       132 l~C~IC~~~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +.|+||++.|...   +.+++|||.||..|+.+|+...+     ..||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~-----~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-----GLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC-----CBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC-----CCCCccCCcCC
Confidence            5799999988532   22338999999999999997543     47999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3e-09  Score=83.32  Aligned_cols=54  Identities=20%  Similarity=0.499  Sum_probs=41.2

Q ss_pred             CCceeccccccccCc-----------------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461          130 EHAKCCICLNIWHDV-----------------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF  184 (340)
Q Consensus       130 e~l~C~IC~~~~~~P-----------------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~  184 (340)
                      .+..|+||++.|.++                 +.+++|+|.||..||..|+.... ..+..+||.||+.+..
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~-~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC-cCCCCccccccchhcc
Confidence            345799999988543                 34559999999999999998643 2234689999987643

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1e-08  Score=76.61  Aligned_cols=46  Identities=35%  Similarity=0.692  Sum_probs=36.4

Q ss_pred             ceeccccccccC-----------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          132 AKCCICLNIWHD-----------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       132 l~C~IC~~~~~~-----------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      -.|+||++.+.+                 ++.+++|+|.|+..||.+|++.+.      +||+||+...
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~------~CP~CR~~~~   84 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ------VCPLDNREWE   84 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS------BCSSSCSBCC
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC------cCCCCCCccc
Confidence            358888776644                 234449999999999999998764      8999999865

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.56  E-value=2.2e-08  Score=69.17  Aligned_cols=51  Identities=27%  Similarity=0.540  Sum_probs=42.1

Q ss_pred             ccCCceeccccccccCccEeCCCC-----CcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461          128 DIEHAKCCICLNIWHDVVTVAPCL-----HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ  183 (340)
Q Consensus       128 ~~e~l~C~IC~~~~~~Pv~l~pCg-----H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~  183 (340)
                      +++...|+||++.+.++... ||.     |.|+..||.+|+..+.    ..+||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~-~c~c~~c~h~~H~~Cl~~W~~~~~----~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISR----NTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHT----CSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeE-ecccCCCCCEEcHHHHHHHHhhCC----CCCCcccCCeee
Confidence            45778999999999888666 764     9999999999997643    358999999865

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.1e-06  Score=65.70  Aligned_cols=52  Identities=21%  Similarity=0.600  Sum_probs=37.2

Q ss_pred             CCceecccccccc--CccEeCCCCCcccHhhHHHHHHhccC--CCCCcCCCCCCcc
Q 019461          130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQE--KRSTVLCPHCRAV  181 (340)
Q Consensus       130 e~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~  181 (340)
                      ....|+||++.+.  +.+.+++|+|.||..|+..|+...-.  ....+.||.|...
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            3468999999874  33445489999999999999975421  1234679986543

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.15  E-value=0.024  Score=34.34  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=26.2

Q ss_pred             CCCCCCCccccccccccccccccCCccCCCCCccc
Q 019461          283 SRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPM  317 (340)
Q Consensus       283 ~r~~~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~  317 (340)
                      .+...+.+||..|++++|..+.....+..|.+.||
T Consensus         5 ~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~v~pi   39 (39)
T d1frea_           5 EHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI   39 (39)
T ss_dssp             SSCSSCCCCCCSSSSSSCCTTSSCSSCTTCCCCCC
T ss_pred             ccCcceeEEcccCCcEeeccCcCCCCcCCCcEeeC
Confidence            34346899999999999999976655666666554

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.029  Score=35.38  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             CCCC-CCCccccccccccccccccCCccCCCCCcc
Q 019461          283 SRND-SVPQHCLGCDRAFCGAYWHAQMVARSDSQP  316 (340)
Q Consensus       283 ~r~~-~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~  316 (340)
                      .++. .+.+||.+|+.++|..+.-...+-.|.+.+
T Consensus        10 ~H~~e~l~~yC~~C~~~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1          10 EHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             SCTTSBEEEEETTTTEEEEHHHHHTSSTTSSCCCC
T ss_pred             hhCCCcceEEcCCCCccCCccCcCcCCcCCCeEee
Confidence            3433 478999999999999996433344444433

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.066  Score=32.48  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             CCCCCCCCccccccccccccccccCCccCCCCCcc
Q 019461          282 PSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQP  316 (340)
Q Consensus       282 p~r~~~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~  316 (340)
                      +.+...+.+||..|++++|..+........|.+.|
T Consensus         5 ~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~v~p   39 (40)
T d2dida1           5 PQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVP   39 (40)
T ss_dssp             TTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEE
T ss_pred             hhhCccceEEcccCCcEeeccCcCCCCcCCCcEec
Confidence            34444689999999999999996554455554444

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.093  Score=33.49  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             CCCCC-CCCcccccccccccccccc
Q 019461          282 PSRND-SVPQHCLGCDRAFCGAYWH  305 (340)
Q Consensus       282 p~r~~-~~~~~C~~C~~~~C~~y~~  305 (340)
                      +.++. .+.+||.+|+.++|..+.-
T Consensus         5 ~~H~~e~l~~yC~~c~~~iC~~C~~   29 (51)
T d2d8ua1           5 KEHEDEKINIYCLTCEVPTCSMCKV   29 (51)
T ss_dssp             SSCTTCCCCSEESSSCCCCCSHHHH
T ss_pred             cccCcCcceEEcCCCCceECccccC
Confidence            34544 6899999999999999953

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.18  Score=34.13  Aligned_cols=47  Identities=30%  Similarity=0.593  Sum_probs=34.8

Q ss_pred             CCceeccccccccCccEeCCC----CCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461          130 EHAKCCICLNIWHDVVTVAPC----LHNFCNGCFSEWLRRSQEKRSTVLCPHC  178 (340)
Q Consensus       130 e~l~C~IC~~~~~~Pv~l~pC----gH~FC~~Cl~~~~~~~~~~~~~~~CP~C  178 (340)
                      ..|.|.+|.+.+.+--.+ .|    +|.||..|-....+... ..+...||.=
T Consensus         7 ~~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sik~q~-~~~evyCPSG   57 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQG-ATGEVYCPSG   57 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHH-SSSCCCCTTS
T ss_pred             CceeeeeehhhhcCCceE-eCCCCcCCceeccccHHHHHhcC-CCCcEECCCC
Confidence            458999999999876555 45    69999999998877653 2345667754

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=0.2  Score=33.90  Aligned_cols=30  Identities=13%  Similarity=0.171  Sum_probs=20.5

Q ss_pred             CCCccccccccccccccccCCccCCCCCcc
Q 019461          287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQP  316 (340)
Q Consensus       287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~  316 (340)
                      .+.+||.+|+.++|..+.....+-.|...+
T Consensus        21 ~l~~fC~~C~~~iC~~C~~~~~Hk~H~~~~   50 (71)
T d2djaa1          21 KVNMYCVSDDQLICALCKLVGRHRDHQVAS   50 (71)
T ss_dssp             CCCEEETTTTEEECHHHHHTSTTTTCCBCC
T ss_pred             cceeEcCCCCceeccccccCCCCCCCcCcC
Confidence            478999999999999996443333343333