Citrus Sinensis ID: 019479
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | 2.2.26 [Sep-21-2011] | |||||||
| P23525 | 344 | 37 kDa inner envelope mem | N/A | no | 1.0 | 0.988 | 0.787 | 1e-147 | |
| C3MCY6 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.347 | 0.457 | 0.382 | 4e-11 | |
| Q92SK7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.347 | 0.457 | 0.357 | 1e-09 | |
| A6UFF7 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.347 | 0.457 | 0.349 | 3e-09 | |
| Q8UIH5 | 259 | Ubiquinone/menaquinone bi | yes | no | 0.302 | 0.397 | 0.351 | 8e-09 | |
| Q8KF69 | 242 | Demethylmenaquinone methy | no | no | 0.305 | 0.429 | 0.403 | 1e-08 | |
| Q1GC56 | 250 | Ubiquinone/menaquinone bi | yes | no | 0.417 | 0.568 | 0.255 | 2e-08 | |
| P46326 | 244 | Uncharacterized protein Y | yes | no | 0.308 | 0.430 | 0.321 | 2e-08 | |
| B9J7S8 | 258 | Ubiquinone/menaquinone bi | yes | no | 0.302 | 0.399 | 0.361 | 2e-08 | |
| Q8CSH9 | 241 | Demethylmenaquinone methy | yes | no | 0.394 | 0.556 | 0.319 | 2e-08 |
| >sp|P23525|IN37_SPIOL 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/344 (78%), Positives = 300/344 (87%), Gaps = 4/344 (1%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLK-SFTKKGLVSFTSDQNAKFFTP--RCS 57
MA SML+G D L L+SG +P L F GS+ + L + + AK T +C+
Sbjct: 1 MACSMLNGVDKLALISGKTPNRLRFSGSDFTGSYKLPRLNLPPNSRNLRAKTLTTVTKCT 60
Query: 58 LSSS-RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMR 116
LS+S RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL +RNM
Sbjct: 61 LSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNML 120
Query: 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT 176
VVDVGGGTGFTTLGI+KHVD KNVTILDQSPHQLAKAK K+PLKEC IIEGDAEDLPFPT
Sbjct: 121 VVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPT 180
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236
DYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSRFFADVWMLFPK
Sbjct: 181 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 240
Query: 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAED 296
EEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK ED
Sbjct: 241 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKVED 300
Query: 297 VQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
VQKPV+P VF RF+LGA+A+TY+VLVPIYMW+KD+I PKG P+
Sbjct: 301 VQKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344
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Not yet known, one of the major proteins of the inner membrane of the chloroplast envelope. Spinacia oleracea (taxid: 3562) |
| >sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
N RV+DV GGTG IV+ K + T+LD + LA +A++K L +E +
Sbjct: 71 NYRVLDVAGGTGDIAFRIVEASGRKAHATVLDINGSMLAVGAERARKKGLLGNLEFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + +KEAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium sp. (strain NGR234) (taxid: 394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
+ RV+DV GGTG IV+ K + T+LD + L+ +A++K +E +
Sbjct: 71 DYRVLDVAGGTGDIAFRIVERSGRKAHATVLDINGSMLSVGAERARKKGIEANLDFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + +KEAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
+ RV+DV GGTG IV+ K T+LD + L+ +A++K +E +
Sbjct: 71 DYRVLDVAGGTGDIAFRIVERSGRKAQATVLDINGSMLSVGAERARKKGIEANLEFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + ++EAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Sinorhizobium medicae (strain WSM419) (taxid: 366394) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLA----KAKQKEPLKECTIIE 166
D + +++DV GGTG I++ + + T+LD + LA +A +K+ T +E
Sbjct: 70 DPSYKILDVAGGTGDVAFRIIEASNRLAHATVLDINGSMLAVGEERAAKKKLSDNLTFVE 129
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE+LPF + D Y A I P +KEAYRVLK GG+ V+
Sbjct: 130 ANAEELPFEANTFDAYTVAFGIRNVPRIDVALKEAYRVLKRGGRLLVL 177
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8KF69|UBIE_CHLTE Demethylmenaquinone methyltransferase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
+R +++DV GTG + K AK VT D SP LA A++K P +EG AE
Sbjct: 62 EREPKILDVATGTGDLAASMAKIPGAK-VTGYDLSPEMLAIARKKYP--NIEFLEGFAEK 118
Query: 172 LPFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
+PF D + VSAG + + D +G+KE +RVLK GG A +I P+ P
Sbjct: 119 MPF-DDRSFHVVSAGFGVRNFEDLAQGMKEFHRVLKPGGCAYIIEPMIP 166
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q1GC56|UBIE_RUEST Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Ruegeria sp. (strain TM1040) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTI-IEGDAED 171
R++DV GGTG + +K + T+LD + L + +++ E + EC + GDA
Sbjct: 66 RLLDVAGGTGDISFRFLKRAGHGHSTVLDLTTPMLEEGRKRAEAEQMAECLDWVTGDAMA 125
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV----------IGPVYPTF 221
LPF + D Y + I PQ + EAYRVLK GG+ V + +Y +
Sbjct: 126 LPFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDGLQKLYDLY 185
Query: 222 WLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257
+ ++ + FP +E ++ + AGF++ K + +
Sbjct: 186 SFNVIPRMGQMIAGDYDSYQYLVESIRNFPDQETFLGMVKSAGFENAKHRNL 237
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Silicibacter sp. (strain TM1040) (taxid: 292414) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|P46326|YXBB_BACSU Uncharacterized protein YxbB OS=Bacillus subtilis (strain 168) GN=yxbB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECTIIEGDAE 170
+N ++D+G G G+ ++ + K +A +V +D +P H++A+ + K+ ++I D E
Sbjct: 36 KNKVIIDMGTGPGYLSIQLAKRTNA-HVHAVDINPAMHEIAQEEAKKS-GVSSLISFDLE 93
Query: 171 D---LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
D L + YAD VS + +W D +G+KE YRVL GGK ++ P
Sbjct: 94 DVHHLSYADQYADFIVSYSCLHHWEDVVKGLKECYRVLAPGGKIVILDTFNP 145
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|B9J7S8|UBIE_AGRRK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLA----KAKQKEPLKECTIIE 166
D + +V+DV GGTG IV+ + + T+LD + L +A +K+ T +E
Sbjct: 69 DPSYKVLDVAGGTGDIAFRIVEASNRLAHATVLDINGSMLGVGAERAAKKKLTDNLTFVE 128
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE+LPF + D Y A I P +KEAYRVLK GG+ V+
Sbjct: 129 ANAEELPFEPNSFDAYTIAFGIRNVPRIDVALKEAYRVLKRGGRLLVL 176
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP 173
+ +DV GT T+ + + V +K VT LD S + L KQK L+ ++ GDA +LP
Sbjct: 52 KALDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLP 111
Query: 174 FPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232
F + D YV+ G + PD +KE +RVLK GG + PT L + ++
Sbjct: 112 FDDNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYF 170
Query: 233 ---------LFPKEEEYIEWFQKAGFK 250
+F K +E EW Q++ F
Sbjct: 171 KFVMPIFGKMFAKSKEEYEWLQQSTFN 197
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| 255552017 | 341 | chloroplast inner envelope protein, puta | 1.0 | 0.997 | 0.865 | 1e-169 | |
| 224102133 | 341 | predicted protein [Populus trichocarpa] | 1.0 | 0.997 | 0.856 | 1e-168 | |
| 224085545 | 340 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.852 | 1e-165 | |
| 224062301 | 340 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.855 | 1e-165 | |
| 219842168 | 340 | 2-methyl-6-phytylbenzoquinone methyltran | 1.0 | 1.0 | 0.835 | 1e-163 | |
| 345114364 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 1.0 | 0.968 | 0.826 | 1e-162 | |
| 255559875 | 342 | chloroplast inner envelope protein, puta | 1.0 | 0.994 | 0.847 | 1e-162 | |
| 345114368 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 1.0 | 0.968 | 0.826 | 1e-161 | |
| 358249098 | 342 | uncharacterized protein LOC100783986 [Gl | 0.997 | 0.991 | 0.842 | 1e-161 | |
| 345114370 | 351 | 2-methyl-6-phytylbenzoquinone methyltran | 1.0 | 0.968 | 0.823 | 1e-161 |
| >gi|255552017|ref|XP_002517053.1| chloroplast inner envelope protein, putative [Ricinus communis] gi|223543688|gb|EEF45216.1| chloroplast inner envelope protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/341 (86%), Positives = 317/341 (92%), Gaps = 1/341 (0%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSD-QNAKFFTPRCSLS 59
MA+ +L+GA++L+ GI+P GLGFVGSN H+ F KK LVS+T + Q+++ P CS+S
Sbjct: 1 MAAPLLNGAENLKFRRGITPAGLGFVGSNFHVSCFPKKILVSYTRNSQSSRLLAPSCSIS 60
Query: 60 SSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVD 119
SSRPASQPRFIQHK EAFWFYRFLSIVYDH+INPGHWTEDMRDEALEPADL+DRNM VVD
Sbjct: 61 SSRPASQPRFIQHKTEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYDRNMTVVD 120
Query: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK PLKEC IIEGDAEDLPFPTDYA
Sbjct: 121 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKAPLKECKIIEGDAEDLPFPTDYA 180
Query: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239
DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC+IGPVYPTFWLSRFFADVWMLFPKEEE
Sbjct: 181 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVYPTFWLSRFFADVWMLFPKEEE 240
Query: 240 YIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQK 299
YIEWF++AGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDV+K
Sbjct: 241 YIEWFKRAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVKK 300
Query: 300 PVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
PVNPF F LRFILG IAATY+VLVPIYMW+KDQIVPKG PI
Sbjct: 301 PVNPFTFLLRFILGTIAATYYVLVPIYMWIKDQIVPKGMPI 341
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102133|ref|XP_002312559.1| predicted protein [Populus trichocarpa] gi|222852379|gb|EEE89926.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/341 (85%), Positives = 317/341 (92%), Gaps = 1/341 (0%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLV-SFTSDQNAKFFTPRCSLS 59
MAS +L+G ++ + GI+P+GLGFVGSNLH+ F+ K +V +QN++ PRCSLS
Sbjct: 1 MASLLLNGPQNVNFIGGITPSGLGFVGSNLHVSCFSSKNIVPCHNRNQNSRILAPRCSLS 60
Query: 60 SSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVD 119
S+RPASQPRFIQHKKEAFWFYRFLSIVYDH+INPGHWTEDMRDEALEPADL+DR M VVD
Sbjct: 61 SARPASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYDRRMTVVD 120
Query: 120 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179
VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK+PLKEC IIEGDAEDLPFPTDYA
Sbjct: 121 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKKPLKECKIIEGDAEDLPFPTDYA 180
Query: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239
DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC+IGPVYPTFWLSRFFADVWMLFPKEEE
Sbjct: 181 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSRFFADVWMLFPKEEE 240
Query: 240 YIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQK 299
YIEWF+KAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAE+++K
Sbjct: 241 YIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEEIEK 300
Query: 300 PVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
PVNP VF +RFILGA+AATYF+LVPIYMWLKDQIVPKG PI
Sbjct: 301 PVNPLVFLMRFILGAMAATYFILVPIYMWLKDQIVPKGMPI 341
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085545|ref|XP_002307615.1| predicted protein [Populus trichocarpa] gi|222857064|gb|EEE94611.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/340 (85%), Positives = 313/340 (92%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSS 60
M SS+ +GA++L L+ GI+P GLGF+GS+L + F+K L+S T A+ TP+CSLS+
Sbjct: 1 MTSSVFNGAENLALIRGITPKGLGFLGSDLQGRHFSKVSLISSTRISKARTLTPKCSLSA 60
Query: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDV 120
RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADL DRN VVDV
Sbjct: 61 PRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSDRNTIVVDV 120
Query: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180
GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+C I+EGDAEDLPFPTDYAD
Sbjct: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFPTDYAD 180
Query: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240
RYVSAGSIEYWPDPQRGIKEAYRVLK+ GKAC+IGPV+PTFWLSRFFADVWMLFPKEEEY
Sbjct: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKLEGKACLIGPVHPTFWLSRFFADVWMLFPKEEEY 240
Query: 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKP 300
IEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPKAEDV KP
Sbjct: 241 IEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKP 300
Query: 301 VNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
NPFVF LRFILGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 301 ANPFVFFLRFILGAMAATYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224062301|ref|XP_002300813.1| predicted protein [Populus trichocarpa] gi|222842539|gb|EEE80086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/340 (85%), Positives = 312/340 (91%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSS 60
MASSML+GA++L L+ GI+P GLGF GS+L + F+K V+ T A+ TP CSLS+
Sbjct: 1 MASSMLNGAENLTLIRGITPKGLGFGGSDLQGRHFSKVNAVASTRISKARTLTPMCSLSA 60
Query: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDV 120
SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADL +RNM VVDV
Sbjct: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLSNRNMLVVDV 120
Query: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180
GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+C IIEGDAEDLPF TDYAD
Sbjct: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFRTDYAD 180
Query: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240
RYVSAGSIEYWPDPQRGIKEAYRVLK+GGKAC+IGPVYPTFWLSRFFAD WMLFPKEEEY
Sbjct: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADAWMLFPKEEEY 240
Query: 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKP 300
IEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPKAEDV +P
Sbjct: 241 IEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVTEP 300
Query: 301 VNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
V PFVF +R ILGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 301 VKPFVFLMRLILGAMAATYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219842168|dbj|BAH10641.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust.
Identities = 284/340 (83%), Positives = 311/340 (91%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSS 60
MAS ML+GA++ LMSGI+P GLGF+GS+ H F + L+S + + P+C+LS+
Sbjct: 1 MASLMLNGAENFTLMSGITPKGLGFLGSDFHGNHFPRVNLISSSRISRTRTVMPKCNLSA 60
Query: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDV 120
SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADL +RN+ VVDV
Sbjct: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNLLVVDV 120
Query: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180
GGGTGFTTLGIVKHVDA+NVTILDQSPHQLAKAKQKEPLK+C IIEGDAEDLPFPTDYAD
Sbjct: 121 GGGTGFTTLGIVKHVDAQNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTDYAD 180
Query: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240
RYVSAGSIEYWPDPQRGIKEAYRVLK+GGKAC+IGPVYPTFWLSRFFADVWMLFPKEEEY
Sbjct: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEY 240
Query: 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKP 300
IEWF+KAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPL+LGPK ED+ KP
Sbjct: 241 IEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLKLGPKEEDIAKP 300
Query: 301 VNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
VNPFVF LRFILG +AA Y+VLVPIYMWLKDQIVPKG+PI
Sbjct: 301 VNPFVFLLRFILGGLAAAYYVLVPIYMWLKDQIVPKGRPI 340
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114364|gb|AEN74936.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] gi|345114372|gb|AEN74940.1| 2-methyl-6-phytylbenzoquinone methyltranferase 1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 290/351 (82%), Positives = 307/351 (87%), Gaps = 11/351 (3%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLK-----------SFTKKGLVSFTSDQNA 49
MASSM SG +SL L S +P GL F SN H K +F+ K V S++
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 50 KFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 109
+ P+CSLS+SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD
Sbjct: 61 RTIVPKCSLSASRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 120
Query: 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA 169
L DRNM VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+C IIEGDA
Sbjct: 121 LSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDA 180
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
EDLPF TDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKACVIGPVYPTFWLSRFFAD
Sbjct: 181 EDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFAD 240
Query: 230 VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQ 289
VWMLFPKEEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQ
Sbjct: 241 VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ 300
Query: 290 LGPKAEDVQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
LGPK EDV+KPVN FVF RF+LGA+AAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 301 LGPKEEDVEKPVNTFVFLYRFLLGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559875|ref|XP_002520956.1| chloroplast inner envelope protein, putative [Ricinus communis] gi|223539793|gb|EEF41373.1| chloroplast inner envelope protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 290/342 (84%), Positives = 308/342 (90%), Gaps = 2/342 (0%)
Query: 1 MASSMLSGADSLRLM--SGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSL 58
MASSML+GA++L LM + GL F GS+ + K F + L S + P+CSL
Sbjct: 1 MASSMLNGAENLTLMRIKSTNHKGLSFSGSDFNGKHFPRVNLTSSSRILKTTTIAPKCSL 60
Query: 59 SSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVV 118
S+SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADL DRNM VV
Sbjct: 61 SASRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSDRNMLVV 120
Query: 119 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDY 178
DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC IIEGDAEDLPFPTDY
Sbjct: 121 DVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDY 180
Query: 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE 238
ADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSRFFADVWMLFPKEE
Sbjct: 181 ADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEE 240
Query: 239 EYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQ 298
EYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK EDV
Sbjct: 241 EYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVS 300
Query: 299 KPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
KPVNPFVF LRFILGA+AATY+VLVPIYMWLKDQIVPKG+PI
Sbjct: 301 KPVNPFVFFLRFILGAMAATYYVLVPIYMWLKDQIVPKGRPI 342
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114368|gb|AEN74938.1| 2-methyl-6-phytylbenzoquinone methyltranferase 3 [Arachis hypogaea] gi|345114376|gb|AEN74942.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis duranensis] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/351 (82%), Positives = 306/351 (87%), Gaps = 11/351 (3%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLK-----------SFTKKGLVSFTSDQNA 49
MASSM SG +SL L S +P GL F SN H K +F+ K V S++
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASNFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 50 KFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 109
+ P+CSLS+SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD
Sbjct: 61 RTIVPKCSLSASRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 120
Query: 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA 169
L DRNM VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+C IIEGDA
Sbjct: 121 LSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDA 180
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
EDLPF TDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKACVIGPVYPTFWLSRFFAD
Sbjct: 181 EDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFAD 240
Query: 230 VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQ 289
VWMLFPKEEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQ
Sbjct: 241 VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ 300
Query: 290 LGPKAEDVQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
LGPK EDV+KPV PFVF R ILGA+AAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 301 LGPKEEDVEKPVKPFVFLYRLILGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249098|ref|NP_001240248.1| uncharacterized protein LOC100783986 [Glycine max] gi|255641609|gb|ACU21077.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/343 (84%), Positives = 311/343 (90%), Gaps = 4/343 (1%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKF---FTPRCS 57
M S MLSG + L L + ++ GLGF GS+LH K+F + + TS + F P+CS
Sbjct: 1 MGSVMLSGTEKLTLRT-LTGNGLGFTGSDLHGKNFPRVSFAATTSAKVPNFRSIVVPKCS 59
Query: 58 LSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRV 117
+S+SRP+SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRD+ALEPADL DRNM V
Sbjct: 60 VSASRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNDRNMIV 119
Query: 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTD 177
VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC IIEGDAEDLPF TD
Sbjct: 120 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFRTD 179
Query: 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKE 237
YADRYVSAGSIEYWPDPQRGIKEAYRVLK+GGKAC+IGPVYPTFWLSRFFADVWMLFPKE
Sbjct: 180 YADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 239
Query: 238 EEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDV 297
EEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK EDV
Sbjct: 240 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 299
Query: 298 QKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
+KPVNPFVFALRF+LGA+AAT+FVLVPIYMWLKDQ+VPKGQPI
Sbjct: 300 EKPVNPFVFALRFVLGALAATWFVLVPIYMWLKDQVVPKGQPI 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345114370|gb|AEN74939.1| 2-methyl-6-phytylbenzoquinone methyltranferase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/351 (82%), Positives = 306/351 (87%), Gaps = 11/351 (3%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLK-----------SFTKKGLVSFTSDQNA 49
MASSM SG +SL L S +P GL F S H K +F+ K V S++
Sbjct: 1 MASSMFSGTESLTLFSSKTPNGLCFNASTFHSKRIGFNSSTTNFNFSNKARVRHNSNRIV 60
Query: 50 KFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 109
+ P+CSLS+SRP SQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD
Sbjct: 61 RTIVPKCSLSASRPTSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAD 120
Query: 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA 169
L DRNM VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK+C IIEGDA
Sbjct: 121 LSDRNMIVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDA 180
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
EDLPF TDYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKACVIGPVYPTFWLSRFFAD
Sbjct: 181 EDLPFRTDYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACVIGPVYPTFWLSRFFAD 240
Query: 230 VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQ 289
VWMLFPKEEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQ
Sbjct: 241 VWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQ 300
Query: 290 LGPKAEDVQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
LGPK EDV+KPVN FVF RF+LGA+AAT+FVLVPIYMWLKDQIVPKGQPI
Sbjct: 301 LGPKEEDVEKPVNTFVFLYRFLLGALAATWFVLVPIYMWLKDQIVPKGQPI 351
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 340 | ||||||
| TAIR|locus:2087393 | 338 | APG1 "ALBINO OR PALE GREEN MUT | 0.979 | 0.985 | 0.762 | 4.9e-140 | |
| TIGR_CMR|NSE_0950 | 230 | NSE_0950 "ubiquinone/menaquino | 0.291 | 0.430 | 0.295 | 2e-05 | |
| TIGR_CMR|DET_1591 | 221 | DET_1591 "methyltransferase, U | 0.388 | 0.597 | 0.293 | 9.4e-05 | |
| UNIPROTKB|P30866 | 207 | yafE "predicted S-adenosylmeth | 0.255 | 0.420 | 0.346 | 0.00017 | |
| TIGR_CMR|SPO_0145 | 257 | SPO_0145 "ubiquinone/menaquino | 0.364 | 0.482 | 0.272 | 0.00039 | |
| UNIPROTKB|Q81RE2 | 209 | BA_2106 "Uncharacterized prote | 0.217 | 0.354 | 0.315 | 0.0004 | |
| TIGR_CMR|BA_2106 | 209 | BA_2106 "conserved hypothetica | 0.217 | 0.354 | 0.315 | 0.0004 | |
| RGD|1310857 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.208 | 0.217 | 0.373 | 0.00061 | |
| ASPGD|ASPL0000048211 | 314 | AN1743 [Emericella nidulans (t | 0.367 | 0.398 | 0.282 | 0.00086 |
| TAIR|locus:2087393 APG1 "ALBINO OR PALE GREEN MUTANT 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
Identities = 263/345 (76%), Positives = 287/345 (83%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKF-FTPRCS-- 57
MAS ML+GA + P GLG GSNLH +S + L+S T + RCS
Sbjct: 1 MASLMLNGAITF-------PKGLGSPGSNLHARSIPRPTLLSVTRTSTPRLSVATRCSSS 53
Query: 58 -LSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMR 116
+SSSRP++QPRFIQHKKEA+WFYRFLSIVYDHVINPGHWTEDMRD+ALEPADL +MR
Sbjct: 54 SVSSSRPSAQPRFIQHKKEAYWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSHPDMR 113
Query: 117 VVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT 176
VVDV IVK V AKNVTILDQSPHQLAKAKQKEPLKEC I+EGDAEDLPFPT
Sbjct: 114 VVDVGGGTGFTTLGIVKTVKAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPT 173
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236
DYADRYVSAGSIEYWPDPQRGI+EAYRVLKIGGKAC+IGPVYPTFWLSRFF+DVWMLFPK
Sbjct: 174 DYADRYVSAGSIEYWPDPQRGIREAYRVLKIGGKACLIGPVYPTFWLSRFFSDVWMLFPK 233
Query: 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAED 296
EEEYIEWF+ AGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK ED
Sbjct: 234 EEEYIEWFKNAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEED 293
Query: 297 VQKPVN-PFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
V+KPVN PF F RF+LG +AA +FVL+PIYMW+KDQIVPK QPI
Sbjct: 294 VEKPVNNPFSFLGRFLLGTLAAAWFVLIPIYMWIKDQIVPKDQPI 338
|
|
| TIGR_CMR|NSE_0950 NSE_0950 "ubiquinone/menaquinone biosynthesis methlytransferase UbiE" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 114 NMRVVDVXXXXXXXXXXIVK-HVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDA 169
N RV+D+ ++K H+ + + + D++ L AK + E ++ DA
Sbjct: 45 NQRVLDMAAGTGDITLRLLKTHIPVE-IILCDKNHEMLEIAKDRLLDEGYVNLKVVSADA 103
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV 213
LPF D YV A + + + +R + EAYRVLK GG+ +C+
Sbjct: 104 AQLPFEDCSFDHYVVAFGVRNFSNIERSLTEAYRVLKPGGRFSCL 148
|
|
| TIGR_CMR|DET_1591 DET_1591 "methyltransferase, UbiE/COQ5 family" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 42/143 (29%), Positives = 67/143 (46%)
Query: 74 KEAFWFYRFLSIVYDHV----INPGHWTEDMRDEALEPADLFDRNMRVVDVXXXXXXXXX 129
K +W R+ S VYD + P E R + ++ A++ R+ ++D+
Sbjct: 13 KTDYW-KRY-SKVYDFLTRLLFTPFGGEERFRRKFVDEANIQPRD-NIIDMCCGTGATTR 69
Query: 130 XIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR-YVSAGSI 188
+ + VT +D SP +A+AK+K + ++LPFP D+ +VS G
Sbjct: 70 LVAGKLKDGQVTGVDLSPDMMARAKEKVTGLPAVFQQASGDNLPFPEGTFDKAFVSYGLH 129
Query: 189 EYWPDPQR--GIKEAYRVLKIGG 209
E P P R IK+ Y+VLK GG
Sbjct: 130 EM-PTPIRHEAIKQIYKVLKPGG 151
|
|
| UNIPROTKB|P30866 yafE "predicted S-adenosylmethionine-dependent methyltransferase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00017, P = 0.00017
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 137 AKNVTIL---DQSPHQL---AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190
A+NV+ + D S H L A+A + LK T +G AE LPF + D +S S +
Sbjct: 14 AQNVSAVVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHH 73
Query: 191 WPDPQRGIKEAYRVLKIGGKACVI---GPVYPT--FWL 223
W D ++E R+LK GG+ V+ P +P WL
Sbjct: 74 WHDVGAALREVNRILKPGGRLIVMDVMSPGHPVRDIWL 111
|
|
| TIGR_CMR|SPO_0145 SPO_0145 "ubiquinone/menaquinone biosynthesis methyltransferase UbiE" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 104 (41.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 37/136 (27%), Positives = 59/136 (43%)
Query: 86 VYDHVINPG-H--WTEDMRDEALEPADLFDRNMRVVDVXXXXXXXXXXIVKHVDAKNVTI 142
V + V++ G H W + M D L P R++DV +K + T+
Sbjct: 45 VMNDVMSMGIHRVWKDAMMDW-LAPRP----GQRLLDVAGGTGDISFRFLKRAGHGHATV 99
Query: 143 LDQSPHQLAKAKQKEPLKECTI----IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGI 198
LD + L + +++ + + GDA LPF + D Y + I PQ +
Sbjct: 100 LDLTEPMLVEGRKRAEAERMADSLDWVVGDAMALPFEDNTFDVYTISFGIRNVTRPQEAL 159
Query: 199 KEAYRVLKIGGKACVI 214
EAYRVL+ GG+ V+
Sbjct: 160 NEAYRVLRPGGRLMVL 175
|
|
| UNIPROTKB|Q81RE2 BA_2106 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 143 LDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAY 202
+D S + K K++ + + I+GD LPF + + ++ S+E+ +P R + E
Sbjct: 48 VDLSEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIK 107
Query: 203 RVLKIGGKACV--IGP 216
RVLK G AC+ +GP
Sbjct: 108 RVLKSDGYACIAILGP 123
|
|
| TIGR_CMR|BA_2106 BA_2106 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 143 LDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAY 202
+D S + K K++ + + I+GD LPF + + ++ S+E+ +P R + E
Sbjct: 48 VDLSEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIK 107
Query: 203 RVLKIGGKACV--IGP 216
RVLK G AC+ +GP
Sbjct: 108 RVLKSDGYACIAILGP 123
|
|
| RGD|1310857 Coq5 "coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 140 VTILDQSPHQLAKAKQKEPLKECTI----IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 195
V + D + L KQK + T + GDAE+LPF D D Y A I
Sbjct: 167 VMVCDINREMLKVGKQKALARGHTAGLAWVLGDAEELPFDDDRFDVYTIAFGIRNVTHID 226
Query: 196 RGIKEAYRVLKIGGK 210
R ++EA+RVLK GG+
Sbjct: 227 RALQEAHRVLKPGGR 241
|
|
| ASPGD|ASPL0000048211 AN1743 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 103 (41.3 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 39/138 (28%), Positives = 60/138 (43%)
Query: 88 DHVI---NPGHWTEDMRDEALEPA-DLFDRNMRVVDVXXXXXXXXXXIVKHVDAKNVTIL 143
DH + NPG +++ E ++ D D+ I H V I
Sbjct: 90 DHFVRSLNPGSALPSRDNDSAEKGWNILDIAGGTGDIAFRMLDHATNI-NHDYHTRVKIA 148
Query: 144 DQSPHQLAKAKQKE---PL---KECTIIEGDAEDLP-FPTDYADRYVSAGSIEYWPDPQR 196
D +P LA+ K++ P + + ++G+AE +P P + D Y I + D Q
Sbjct: 149 DINPDMLAEGKKRSIQTPYYNSERLSFMQGNAEHMPSIPDNSVDLYTVVFGIRNFTDKQA 208
Query: 197 GIKEAYRVLKIGGK-ACV 213
+ EAYRVLK GG AC+
Sbjct: 209 ALVEAYRVLKPGGVFACM 226
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P23525 | IN37_SPIOL | No assigned EC number | 0.7877 | 1.0 | 0.9883 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 340 | |||
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.0 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-24 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-22 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 2e-18 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-17 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-16 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 6e-16 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-15 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-14 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 6e-13 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 9e-12 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 6e-11 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-10 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 8e-10 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-09 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 7e-09 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-07 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 2e-06 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-06 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 3e-06 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 5e-06 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 6e-05 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 3e-04 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 6e-04 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 0.002 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 0.003 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 0.003 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 689 bits (1779), Expect = 0.0
Identities = 298/340 (87%), Positives = 313/340 (92%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSS 60
MASSML+GA++LRL+ GI+P GLGF GS+LH +SF KK L S + RCS SS
Sbjct: 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSSS 60
Query: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDV 120
SRPASQPRFIQHKKEAFWFYRFLSIVYDH+INPGHWTEDMRD+ALEPADL DRN++VVDV
Sbjct: 61 SRPASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDV 120
Query: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180
GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC IIEGDAEDLPFPTDYAD
Sbjct: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYAD 180
Query: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240
RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC+IGPV+PTFWLSRFFADVWMLFPKEEEY
Sbjct: 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEY 240
Query: 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKP 300
IEWF KAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPKAEDV KP
Sbjct: 241 IEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKP 300
Query: 301 VNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
VNPF F LRFILG IAATY+VLVPIYMWLKDQIVPKGQPI
Sbjct: 301 VNPFSFLLRFILGTIAATYYVLVPIYMWLKDQIVPKGQPI 340
|
Length = 340 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-24
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 34/173 (19%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDA 169
+V+DV GTG L + K V V LD S L A++K + ++ + GDA
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI--GPVYPTFWLSRFF 227
E+LPFP + D + + D + +KE YRVLK GG+ V+ L + +
Sbjct: 111 ENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP-DNPVLRKAY 169
Query: 228 ADVWML---------------------------FPKEEEYIEWFQKAGFKDVK 253
++ FP +EE + +KAGF++V+
Sbjct: 170 -ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221
|
Length = 238 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 6e-22
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTD 177
+DVG GTG + + A VT +D SP LA A+++ P + GDAEDLPFP +
Sbjct: 1 LDVGCGTGLLAEALARRGGA-RVTGVDLSPEMLALARKRAP---RKFVVGDAEDLPFPDE 56
Query: 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV 213
D VS+ + + PDP+R ++E RVLK GGK +
Sbjct: 57 SFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-18
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 46/205 (22%)
Query: 81 RFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKN 139
LS + W + +V+DV GTG + + K D
Sbjct: 17 DLLSFGLHRL-----WRRRAVKLIGVF-----KGQKVLDVACGTGDLAIELAKSAPDRGK 66
Query: 140 VTILDQSPHQLAKAKQKEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSIEY----WPDP 194
VT +D S L AK+K L I+ DAE LPF D A +I + D
Sbjct: 67 VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE----DNSFDAVTIAFGLRNVTDI 122
Query: 195 QRGIKEAYRVLKIGGKACVIGPVYPTFW----LSRFFADVWM------------------ 232
Q+ ++E YRVLK GG+ ++ P +F+ +
Sbjct: 123 QKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLP 182
Query: 233 ----LFPKEEEYIEWFQKAGFKDVK 253
FP +EE ++AGF++V+
Sbjct: 183 ESIRAFPSQEELAAMLKEAGFEEVR 207
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 46/195 (23%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK--- 156
R + ++ + +V+D+ GTG + + K V V LD S LA ++K
Sbjct: 40 RRKTIKWLGVR-PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD 98
Query: 157 -EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY----WPDPQRGIKEAYRVLKIGGKA 211
++GDAE LPFP + D +I + PD + ++E YRVLK GG+
Sbjct: 99 LGLSGNVEFVQGDAEALPFPDNSFDAV----TIAFGLRNVPDIDKALREMYRVLKPGGRL 154
Query: 212 CV----------IGPVYPTFWLSRFFADVWM-------------------LFPKEEEYIE 242
+ + Y F+L + + FP +EE
Sbjct: 155 VILEFSKPTNPPLKKAY-DFYLFKVL--PLIGKLISKNAEAYSYLAESIRAFPDQEELAA 211
Query: 243 WFQKAGFKDVKLKRI 257
++AGF+ V+ + +
Sbjct: 212 MLEEAGFERVRYRNL 226
|
Length = 239 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-16
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAK---QKEPLKECTIIE 166
++V+D+G GTG+ T + + + V +D S + KAK +K + I+
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 167 GDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW- 222
GD E+LP + D +S + + PDP + ++E RVLK GG V PV +
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELP 120
Query: 223 -----LSRFFADVWMLFPKEEEYIEWFQKAG 248
L R +A V +++ + ++AG
Sbjct: 121 ALLEDLERLYAGVLEGAIGKKKLLTILREAG 151
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 6e-16
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 30/171 (17%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECTIIEGD 168
R + +DV GGTG T G+ + V LD + + L + ++K E ++G+
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGN 106
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AE+LPF D D + + +PD + +KEA+RVLK GG+ + P L
Sbjct: 107 AEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAY 166
Query: 229 DVW----------ML----------------FPKEEEYIEWFQKAGFKDVK 253
+++ M FP ++ F+KAGFK V
Sbjct: 167 ELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVG 217
|
Length = 233 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-15
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE---CTIIEGDAEDL 172
RV+D+G GTG L + A+ VT +D SP L A++ +++GDAE+L
Sbjct: 1 RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59
Query: 173 PFPTD-YADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACVI 214
P D D +S + + D R ++EA R+LK GG +
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-14
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 33/176 (18%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL 159
R E + + RV+DVG G G + + V V +D+S LA AK++
Sbjct: 8 RARTFELLAVQPGD-RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AA 65
Query: 160 KECTIIE---GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA----- 211
+E GDA+ LPFP D S +++ DP R + E RVL+ GG+
Sbjct: 66 GLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125
Query: 212 ----CVIGPVYP-------TFWLSRFFADVWM---LFPKEEEYIEWFQKAGFKDVK 253
V FW FAD W+ L F++AG D++
Sbjct: 126 DWDTLVWHSGDRALMRKILNFWSDH-FADPWLGRRLPG-------LFREAGLTDIE 173
|
Length = 241 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-13
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------EPLKECTIIEGDAED 171
+D+G GTG +++ + T +D SP L A ++ + DA D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 172 LPFPT-DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
L + D V++ + + DP+ ++ R+LK GG
Sbjct: 61 LDPGSFDVV---VASNVLHHLADPRAVLRNLRRLLKPGGV 97
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-12
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP 175
V+D+G GTG+ T ++K D S LA+AK K + I GDAE LP
Sbjct: 37 SVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS-ENVQFICGDAEKLPLE 95
Query: 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVWMLF 234
D VS ++++ D + + E RVLK GG T L + F + +
Sbjct: 96 DSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRY 155
Query: 235 PKEEEYIEWFQKAGFKDVKLK 255
+E K F+ + L+
Sbjct: 156 LSLDELKALL-KNSFELLTLE 175
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (147), Expect = 6e-11
Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 6/188 (3%)
Query: 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTL 129
+ Y L+ + D + D+ L L + V+D+G GTG L
Sbjct: 6 AELLSRILELYDRLAELLDAFLLLAEELLDLL-LVLRLLRLLPGGLGVLDIGCGTGRLAL 64
Query: 130 GIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED--LPFPTDYADRYVS 184
V +D SP LA A+ + L + DA LPF + V
Sbjct: 65 LARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVI 124
Query: 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF 244
+ + + P + ++E RVLK GG+ + + R A + P E
Sbjct: 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILL 184
Query: 245 QKAGFKDV 252
+ +
Sbjct: 185 ELEALLRL 192
|
Length = 257 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-10
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI--IEGDAEDLPF 174
++D+G GTG + +VT +D S L AK++ K + + DA DLPF
Sbjct: 1 ILDLGCGTGRVLRALA-RAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPF 59
Query: 175 PTDYADRYVSAG-SIEYWPDPQ--RGIKEAYRVLKIGG 209
D + AG S++Y Q ++EA R+L+ GG
Sbjct: 60 EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-10
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED 171
+DV GT ++ + + V + +V LD S + L+ +QK L ++ G+A +
Sbjct: 48 SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAME 107
Query: 172 LPFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-------- 222
LPF + D YV+ G + PD + ++E YRV+K GGK + PT
Sbjct: 108 LPFDDNSFD-YVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166
Query: 223 --------LSRFFAD-----VWML-----FPKEEEYIEWFQKAGFKDVKLK 255
+ FA W+ FP +E E FQ+AGFKDV++K
Sbjct: 167 YFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 21/180 (11%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160
D LE L M ++D+G G G + + V + S QLA A+++ +
Sbjct: 61 LDLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAAR 118
Query: 161 ECTI-IEGDAEDLPFPTDYADRYVSAGSIEY-----WPDPQRGIKEAYRVLKIGGKA--- 211
+E +D + DR VS G E+ + D K+ Y +LK GG+
Sbjct: 119 GLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDD---FFKKVYALLKPGGRMLLH 175
Query: 212 CVIGP-----VYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVR 266
+ GP +P F F + P E +E +AGF + ++ + P + R +R
Sbjct: 176 SITGPDQEFRRFPDFIDKYIFPGGEL--PSISEILELASEAGFVVLDVESLRPHYARTLR 233
|
Length = 283 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 7e-09
Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 29/169 (17%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
+ RV+D+G GTG + + +VT +D SP +
Sbjct: 4 QRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERG--FDVTGVDPSPAAVLIFS 61
Query: 155 QKEPLKECTIIEGDAEDLPFPTDYADRY---VSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211
D P P A +Y + +E+ PDP +++ +LK GG
Sbjct: 62 L--------------FDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVL 107
Query: 212 CVIGPVYPTFWLSRFFADVWMLFPK--------EEEYIEWFQKAGFKDV 252
+ P+ +R FA+ L P+ EE +KAGF+ V
Sbjct: 108 LISTPLAD--DDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-08
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTIIEGDA 169
RV+D+G GTG + + + VT +D SP L A++ L T ++GDA
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 170 -EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
+ L + D G + + +LK GG+
Sbjct: 61 PDALDLLEGF-DAVFIGGGGGDLLEL---LDALASLLKPGGR 98
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECTIIEGDAE 170
RV+D G G+G L + V ++ P A A+++ L ++ GDA
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61
Query: 171 DLP-FPTDYADRYVS----AGSIEYWPDPQ----RGIKEAYRVLKIGGKACVIGP 216
+L P D + D + R + A R+LK GG VI P
Sbjct: 62 ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL------KECTIIEGD 168
RV+D+ G+G + + V + V LD S QLA A ++ L K IEGD
Sbjct: 76 RVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD 135
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
A DLPF Y D + D + ++E YRVLK G + ++
Sbjct: 136 ATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSIL 181
|
Length = 261 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 45/167 (26%), Positives = 63/167 (37%), Gaps = 46/167 (27%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQ---KEPLKECTIIEGDAED 171
V+D+G G GF + V I +D +P LAKA+ K G+ E
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA 139
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK--------------------- 210
LP + D +S I PD +R KEA+RVLK GG+
Sbjct: 140 LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAE 199
Query: 211 ---ACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254
CV G + +EEEY+ +AGF D+ +
Sbjct: 200 LYAGCVAGAL------------------QEEEYLAMLAEAGFVDITI 228
|
Length = 272 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 59/219 (26%), Positives = 84/219 (38%), Gaps = 45/219 (20%)
Query: 99 DMRDEALE----PADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
M +E+L P D R R+VDVG G G ++ + + A NV + SP Q A+A
Sbjct: 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARAN 158
Query: 155 ---QKEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
+ L + + DA + PF D S S E+ PD ++ ++E RV GG+
Sbjct: 159 ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGR 218
Query: 211 ACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG-----PKWYRGV 265
++ W R L P E QK L +I P W
Sbjct: 219 IIIVT------WCHR------DLEPGETSLKPDEQKL------LDKICAAYYLPAW---- 256
Query: 266 RRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNPF 304
CS + L+ LQ K ED + V PF
Sbjct: 257 --------CSTSDYVKLAESLGLQ-DIKTEDWSEHVAPF 286
|
Length = 340 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 22/178 (12%)
Query: 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILD--QS 146
H INP + +R+ A DL +RV+DVG G G L +VT +D +
Sbjct: 38 HKINP-LRLDYIREVARLRFDLP--GLRVLDVGCGGG--ILSEPLARLGASVTGIDASEK 92
Query: 147 PHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK 206
P ++AK E + EDL D +E+ PDP+ ++ +++K
Sbjct: 93 PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVK 152
Query: 207 IGG-------------KAC-VIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250
GG +IG Y + + D + F K E I W A K
Sbjct: 153 PGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD-YRKFIKPAELIRWLLGANLK 209
|
Length = 243 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 6e-05
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 143 LDQSPHQLAKAKQKEPLK-----ECT-IIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 196
LD S QLA A ++ LK +C IEGDA DLPF D + D R
Sbjct: 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR 62
Query: 197 GIKEAYRVLKIGGKACVI 214
+KE YRVLK G + ++
Sbjct: 63 AMKEMYRVLKPGSRVSIL 80
|
Length = 160 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 53/191 (27%)
Query: 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK-- 154
TE++ + ALE L +RV+D+G G+G L + K VT +D SP LA A+
Sbjct: 73 TEELVEAALE--RLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKN 130
Query: 155 -QKEPLKECTIIEGDAEDLPFPTDYADR------YVSAGSIE--------YWP------- 192
+ L ++ D + P P D Y+ I + P
Sbjct: 131 AARLGLDNVEFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGG 189
Query: 193 -----DPQRGIKEAYRVLKIGGKACV-IGPVYPTFWLSRFFADVWMLFPKEEEYIEW-FQ 245
+R I +A R+LK GG + IG + E + F+
Sbjct: 190 EDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------------YDQGEAVRALFE 230
Query: 246 KAGFKDVKLKR 256
AGF DV+ ++
Sbjct: 231 AAGFADVETRK 241
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157
E + + +E A++ V+++G G G T ++K AK VT ++ + ++
Sbjct: 15 ESVIQKIVEAANV-LEGDVVLEIGPGLGALTEPLLKR--AKKVTAIEIDRRLAERLRKLL 71
Query: 158 PLKE-CTIIEGDAEDLPFP 175
L E IIEGDA +
Sbjct: 72 SLYENLEIIEGDALKVDLN 90
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT 176
V+D G G G + VT LD SP LA+A+QK+ + GD E LP T
Sbjct: 46 VLDAGCGPG--WMSRYWRERGSQVTALDLSPPMLAQARQKDAADH--YLAGDIESLPLAT 101
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
D S ++++ + ++E YRV++ GG
Sbjct: 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV 135
|
Length = 251 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 46/162 (28%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECTIIEGDAED 171
+RV+DVG G G + + + NVT +D S + AK +K+PL + ED
Sbjct: 47 LRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED 104
Query: 172 LPFPTDYADRY---VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
L A + +E+ PDPQ I+ ++LK GG + T S A
Sbjct: 105 LA--EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL-FFSTINRT-PKSYLLA 160
Query: 229 DV---------------WMLFPKEEEYIEWFQKAGF--KDVK 253
V W F K E W + AG KDVK
Sbjct: 161 IVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP 175
RVVD+G G G +T + + +T +D SP LAKA Q+ P + T E D P
Sbjct: 33 RVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--DATFEEADLRTWK-P 89
Query: 176 TDYADRYVSAGSIEYWPD 193
D + +++ PD
Sbjct: 90 EQPTDLLFANAVLQWLPD 107
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.94 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.92 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.92 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.91 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.89 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.88 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.86 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.86 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.84 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.83 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.83 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.83 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.82 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.82 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.82 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.82 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.81 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.81 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.81 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.8 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.8 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.78 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.78 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.77 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.76 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.75 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.74 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.73 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.73 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.72 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.72 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.71 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.7 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.68 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.67 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.67 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.67 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.67 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.67 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.66 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.66 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.65 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.65 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.64 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.63 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.62 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.61 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.61 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.6 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.6 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.59 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.59 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.58 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.58 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.57 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.57 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.57 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.57 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.56 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.56 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.55 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.55 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.54 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.53 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.53 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.53 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.51 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.51 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.5 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.5 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.49 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.49 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.49 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.48 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.46 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.45 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.43 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.42 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.42 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.42 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.41 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.41 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.4 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.38 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.35 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.35 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.34 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.34 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.3 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.29 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.29 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.28 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.28 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.26 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.26 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.23 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.19 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.18 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.18 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.16 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| PLN02366 | 308 | spermidine synthase | 99.14 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.11 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.1 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.1 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.09 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.09 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.08 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.08 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.05 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.01 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 99.01 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.01 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.99 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.99 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.99 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.99 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.97 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.95 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.95 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.92 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.91 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.9 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.89 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.89 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.87 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| PLN02823 | 336 | spermine synthase | 98.87 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.85 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.85 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.83 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.8 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| PLN02476 | 278 | O-methyltransferase | 98.79 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.79 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.78 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.78 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.74 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.72 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.71 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.71 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.66 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.65 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.62 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.62 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.61 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.59 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.59 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.59 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.58 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.57 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.54 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.54 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.54 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.54 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.54 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.54 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.51 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.48 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.48 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.44 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.43 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.41 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.4 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.39 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.39 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.37 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.32 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.3 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.28 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.25 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.23 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.22 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.22 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.22 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.22 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.19 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.16 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.15 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.14 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.14 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.13 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.11 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.11 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.06 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.06 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.05 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.04 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.02 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.01 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.01 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.98 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.95 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.93 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.88 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.88 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.86 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.85 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.81 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.8 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.8 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.72 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.71 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.71 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.65 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.6 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.6 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.5 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.46 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.45 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.35 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.33 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.31 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.23 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.1 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.09 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.09 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.05 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.02 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.8 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.76 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.7 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.65 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.62 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.61 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.56 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 96.56 | |
| PHA01634 | 156 | hypothetical protein | 96.54 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.52 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.51 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.41 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.41 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.28 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.26 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 96.26 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.2 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.14 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.14 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.05 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.02 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.86 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.82 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.65 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.61 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.56 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.46 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.46 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.29 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.03 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.01 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.98 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 94.88 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.82 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.77 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.65 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 94.64 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.59 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 94.51 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.5 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.47 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.43 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.32 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.21 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.13 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.12 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.04 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.02 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 93.75 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 93.63 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.54 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 93.53 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.53 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.38 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.28 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.19 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.06 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.01 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.95 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.9 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.18 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 92.05 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 92.04 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 91.83 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.62 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.56 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.51 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 91.38 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 91.11 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 91.11 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.99 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 90.97 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 90.92 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.92 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 90.87 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.7 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 90.62 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.54 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 90.37 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 90.02 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.86 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.41 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 89.34 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.26 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 89.21 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 89.09 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 89.02 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 88.96 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.87 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.87 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 88.64 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.38 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.1 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 87.95 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.92 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 87.86 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 87.64 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 87.5 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.49 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 87.48 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.42 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.42 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 87.4 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 87.13 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 87.12 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 86.98 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 86.91 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 86.9 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 86.8 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 86.45 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.43 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.15 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 86.12 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.88 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 85.78 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 85.64 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 85.57 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 85.52 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 85.44 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 85.28 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 85.27 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 84.95 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 84.52 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 84.39 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.33 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 84.04 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 83.97 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 83.82 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 83.72 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 83.66 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 83.55 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 83.3 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 83.17 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 83.06 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 82.75 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 82.7 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 82.57 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 82.36 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.21 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 82.05 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 81.83 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 81.35 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 81.22 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 80.99 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 80.6 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 80.41 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 80.31 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 80.26 |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=371.59 Aligned_cols=340 Identities=88% Similarity=1.439 Sum_probs=310.3
Q ss_pred CcccccccccccccccccCCCCCccccCCcccccccccCcccccccCCCcccccccccCccCcCCchhhhhhhhHHhhhh
Q 019479 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFY 80 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (340)
||+++++|+..+++.....|.++|+.++.++.+++++..+....+........+-++.....+...+++.++..+.+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~y 80 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSSSSRPASQPRFIQHKKEAFWFY 80 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceeccccccccCCcccccchhhhhhcceeEc
Confidence 89999999999999888999999999999999999888777666666666677888888888889999999999999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC
Q 019479 81 RFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 160 (340)
+..+..|+..+.+..|.+.++..+++......++.+|||||||+|.++..+++.+++.+|+++|+|+.|++.|+++....
T Consensus 81 ~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~ 160 (340)
T PLN02490 81 RFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
T ss_pred cceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence 99999999988888888888877777665545678999999999999999998877789999999999999999886667
Q ss_pred CcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHH
Q 019479 161 ECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240 (340)
Q Consensus 161 ~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (340)
+++++.+|++++++++++||+|+++.+++++++++.+++++.++|||||++++.++..+..+..+...+.|..+.+.+++
T Consensus 161 ~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl 240 (340)
T PLN02490 161 ECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEY 240 (340)
T ss_pred CCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHH
Confidence 89999999999888888999999999999999999999999999999999998877666556665555666667789999
Q ss_pred HHHHHHCCCcEEEEEEeCCcccccccccceeeeeeEEeecCCCCCCCCCCCcccccccccCChHHHHHHHHHhhhhhhhh
Q 019479 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNPFVFALRFILGAIAATYF 320 (340)
Q Consensus 241 ~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
.++++++||+.+++..+.+.|+++.++++..+.+.+.++||..++.++.+|+.+++..+..||+.|+.+|++|+++++++
T Consensus 241 ~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKPVNPFSFLLRFILGTIAATYY 320 (340)
T ss_pred HHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccCccccccccCcCchhhhHHHHhhhHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccCCCCCC
Q 019479 321 VLVPIYMWLKDQIVPKGQPI 340 (340)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (340)
.|.|+|+|.+++|+|+|+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (340)
T PLN02490 321 VLVPIYMWLKDQIVPKGQPI 340 (340)
T ss_pred hhhhHHHHHhcccccCCCCC
Confidence 99999999999999999997
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=189.35 Aligned_cols=181 Identities=28% Similarity=0.380 Sum_probs=140.5
Q ss_pred HhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH
Q 019479 76 AFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a 153 (340)
....|+..+..|+.+..-- ......++.+....... +|.+|||||||||.++..+++..+.++|+|+|+|+.|++.+
T Consensus 13 v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 13 VQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 4456666677776643211 11222334444444432 79999999999999999999998889999999999999999
Q ss_pred HHhCCC---CCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhh----
Q 019479 154 KQKEPL---KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSR---- 225 (340)
Q Consensus 154 ~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~---- 225 (340)
+++... .+++|+++|++++|+++++||+|.+.+.|++++|.+.+|+|++|+|||||++++.+...+.. +...
T Consensus 92 ~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred HHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 998654 34899999999999999999999999999999999999999999999999999998766532 1111
Q ss_pred ----------------------HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 226 ----------------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 226 ----------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++......+++.+++.++++++||+.+..+..
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 11111223678999999999999998885554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=178.54 Aligned_cols=227 Identities=32% Similarity=0.463 Sum_probs=160.4
Q ss_pred CCCCccccCCcccccccccCcccc-cccCCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCCC--c
Q 019479 20 PTGLGFVGSNLHLKSFTKKGLVSF-TSDQNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGH--W 96 (340)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 96 (340)
+.+.+.+++..+..++........ +...++.....-..+.+.......+++++.-...+.+ +...++.+....+ |
T Consensus 11 ~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~--YD~mND~mSlGiHRlW 88 (296)
T KOG1540|consen 11 PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKK--YDIMNDAMSLGIHRLW 88 (296)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHHH--HHHHHHHhhcchhHHH
Confidence 356666777777777766543333 2223333344444555555555566555544444433 2334444433333 5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC------ceEEEEeCCHHHHHHHHHhCC------CCCcEE
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP------LKECTI 164 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~~~~~a~~~~~------~~~i~~ 164 (340)
... ....+.. ..+.++||++||||..+..+.+..+. .+|+++|+|++|++.++++.. ..++.+
T Consensus 89 Kd~----~v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 89 KDM----FVSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred HHH----hhhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence 222 2233332 36799999999999999999998765 799999999999999998852 234889
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhh------------------
Q 019479 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSR------------------ 225 (340)
Q Consensus 165 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~------------------ 225 (340)
+++|++++||++++||.+.+.+.+.+++++++.|++++|+|||||++.+.++..... ....
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~ia 243 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIA 243 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhh
Confidence 999999999999999999999999999999999999999999999999988765542 1111
Q ss_pred -------HhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 226 -------FFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 226 -------~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++-.....+.+.+++..+.+++||..+.
T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1111122377899999999999999876
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=191.65 Aligned_cols=177 Identities=31% Similarity=0.482 Sum_probs=89.2
Q ss_pred hhhhhhhhhhhhcccC------CCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH
Q 019479 77 FWFYRFLSIVYDHVIN------PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 149 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~ 149 (340)
...|+..++.|+.... ...|....... ... .++.+|||+|||||.++..+++.. +..+|+|+|+|+.|
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~----~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKL----LGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp ---------------------------SHHHHH----HT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhc----cCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3566777777765422 12444433322 222 468899999999999999999875 45799999999999
Q ss_pred HHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH
Q 019479 150 LAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226 (340)
Q Consensus 150 ~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 226 (340)
++.|+++. ...+++++++|++++|+++++||+|++.+.+++++|..++++|++|+|||||++++.+...+.....+.
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 99999873 345899999999999999999999999999999999999999999999999999999876664322111
Q ss_pred h--------------------------hhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 227 F--------------------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 227 ~--------------------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+ ......+.+.+++.++++++||+.++.+.+.
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp HHHH------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1111225678999999999999998876653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=183.95 Aligned_cols=185 Identities=25% Similarity=0.269 Sum_probs=138.9
Q ss_pred hhHHhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH
Q 019479 73 KKEAFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 149 (340)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~ 149 (340)
.......|+..+..|+...... ................ .++.+|||+|||+|.++..+++.+ +..+|+|+|+|++|
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m 110 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ 110 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3445567777788887643211 1111222222223333 468899999999999999998875 35799999999999
Q ss_pred HHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 150 LAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 150 ~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
++.|+++.. ..+++++++|++++|+++++||+|++..++|+++|+..++++++|+|||||++++.+...+..+.
T Consensus 111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~ 190 (261)
T PLN02233 111 LAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF 190 (261)
T ss_pred HHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH
Confidence 999987632 35789999999999999999999999999999999999999999999999999998876543221
Q ss_pred hhH-------------------------hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 224 SRF-------------------------FADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 224 ~~~-------------------------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
... +......+.+.+++.++++++||++++...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 191 TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 110 11112347799999999999999999887764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=178.05 Aligned_cols=160 Identities=24% Similarity=0.290 Sum_probs=126.1
Q ss_pred HHHHhccccCC----CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC
Q 019479 100 MRDEALEPADL----FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED 171 (340)
Q Consensus 100 ~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~ 171 (340)
+...++..+.. ..++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. .++++++++|+.+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 34445554443 1467899999999999999999986 7899999999999999987632 2479999999999
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch---------hHhhHhhhHh-----hcCCCH
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF---------WLSRFFADVW-----MLFPKE 237 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-----~~~~~~ 237 (340)
+++++++||+|++..+++|++|...+++++.++|||||++++.+...... .....+.... ..+.+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~ 259 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCST 259 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCH
Confidence 99999999999999999999999999999999999999999976432210 1111111111 123479
Q ss_pred HHHHHHHHHCCCcEEEEEEeCCc
Q 019479 238 EEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 238 ~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+++.++++++||+++++.++...
T Consensus 260 ~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 260 SDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHHHHHHHHCCCCeeEeeeCcHH
Confidence 99999999999999999887643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=167.93 Aligned_cols=181 Identities=26% Similarity=0.355 Sum_probs=135.0
Q ss_pred hhhhhhhhhhhhcccCC--CCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHH
Q 019479 77 FWFYRFLSIVYDHVINP--GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a 153 (340)
...|+..+..|+..... -......+..++..... .++.+|||+|||+|.++..+++.. ++.+|+|+|+++.+++.+
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV-QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 34555555555542110 11122233444554443 467899999999999999999886 467999999999999999
Q ss_pred HHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------
Q 019479 154 KQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------ 224 (340)
Q Consensus 154 ~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------ 224 (340)
+++. ..++++++++|++++++++++||+|++..+++++++...+++++.++|+|||++++.+...+.....
T Consensus 87 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 166 (231)
T TIGR02752 87 RQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166 (231)
T ss_pred HHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHH
Confidence 8763 2357899999998888888899999999999999999999999999999999999887654432110
Q ss_pred --------------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 225 --------------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 225 --------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+.......+.+.+++.++|+++||+++++..+.
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 167 YFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0011222346788999999999999999888764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=167.51 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=127.8
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~f 179 (340)
...++..+.. .++.+|||||||+|..+..+++.+ +.+|+|+|+|+.+++.++++.. ..++.++++|+.+.++++++|
T Consensus 41 ~~~~l~~l~l-~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIEL-NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCC-CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 3445555544 478899999999999999998875 6799999999999999998754 357999999998888888999
Q ss_pred cEEEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCc--hhHhh---HhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 180 DRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPT--FWLSR---FFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 180 D~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
|+|++..+++|++ +...++++++++|||||++++.+..... .+... +.......+.+.+++.++|+++||+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999998886 7789999999999999999998765432 11111 111112235689999999999999999
Q ss_pred EEEEeCCccc
Q 019479 253 KLKRIGPKWY 262 (340)
Q Consensus 253 ~~~~~~~~~~ 262 (340)
+..+....|.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9999876654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=173.23 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=119.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++.. ..+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999998875 7899999999999999997632 247899999999888778899999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh--H----hhHh----h---hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW--L----SRFF----A---DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~----~~~~----~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+|+.|+..+++++.++|||||.+++...+..... . ..++ . ..|..+++.+++.++++++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999999876543210 0 0111 1 123347899999999999999999886
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=161.67 Aligned_cols=147 Identities=23% Similarity=0.271 Sum_probs=114.5
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEE
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
.++..+.. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|++ .+++++++|+++++ ++++||+|
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RGVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cCCcEEEcChhhCC-CCCCceEE
Confidence 34444443 36789999999999999999999888999999999999999986 36889999998764 56789999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc---hhH-hh------Hh---hhH----hhcCCCHHHHHHHHH
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT---FWL-SR------FF---ADV----WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~-~~------~~---~~~----~~~~~~~~~~~~~l~ 245 (340)
+++.++||++|+..++++++++|||||++++..+.... ... .. +. ... ...+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987543211 100 00 10 000 112458999999999
Q ss_pred HCCCcEEEEE
Q 019479 246 KAGFKDVKLK 255 (340)
Q Consensus 246 ~aGF~~v~~~ 255 (340)
++||++....
T Consensus 174 ~aGf~v~~~~ 183 (255)
T PRK14103 174 DAGCKVDAWE 183 (255)
T ss_pred hCCCeEEEEe
Confidence 9999855443
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-20 Score=157.65 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=118.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC--cEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||||||-|.++..+|+. |..|+|+|+++.+++.|+....... +++.+...+++....++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999998 8999999999999999998865554 44888888877666689999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhH------hhHhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL------SRFFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|++.+++.|.+++||||.+++.+.+...... ..++. ..+..+..++++..++..+|+.+.+...+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 999999999999999999999999877542110 11111 11223667899999999999998888766
Q ss_pred C
Q 019479 258 G 258 (340)
Q Consensus 258 ~ 258 (340)
.
T Consensus 217 ~ 217 (243)
T COG2227 217 T 217 (243)
T ss_pred E
Confidence 4
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=162.74 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=117.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++|||||||+|.++..+++.+++.+|+|+|+|+.+++.++++.. ..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999999999888899999999999999998743 24689999999665554 57999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 262 (340)
+.++..+++++.++|||||++++.+...... ...........+.+.++|.++++++||++++...+...+.
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~ 150 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLL-SAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIA 150 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccC-ccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHh
Confidence 9999999999999999999999987643211 0000000111256889999999999999999999876553
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=161.73 Aligned_cols=144 Identities=21% Similarity=0.336 Sum_probs=114.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.. .++++++++|+.+++ +.+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35789999999999999999987 7899999999999999998743 256899999997753 5567899999999
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh-------hh-H---------hhcCCCHHHHHHHHHHCCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-------AD-V---------WMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~-~---------~~~~~~~~~~~~~l~~aGF 249 (340)
+++|+.++..+++++.++|||||++++...+.........+ .. . .....+++++.++++++||
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998876554321111100 00 0 0123578999999999999
Q ss_pred cEEEEEEe
Q 019479 250 KDVKLKRI 257 (340)
Q Consensus 250 ~~v~~~~~ 257 (340)
++++...+
T Consensus 201 ~~~~~~gi 208 (255)
T PRK11036 201 QIMGKTGV 208 (255)
T ss_pred eEeeeeeE
Confidence 99877665
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-19 Score=154.43 Aligned_cols=158 Identities=28% Similarity=0.431 Sum_probs=123.8
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
..++..... .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++.. ..++.++.+|+.+.++..
T Consensus 41 ~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 41 RKTIKWLGV-RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHhCC-CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 333444433 2578999999999999999999876 5899999999999999998753 256899999998877777
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-h-------------------------HhhhH
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-R-------------------------FFADV 230 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-------------------------~~~~~ 230 (340)
++||+|++..+++++.+...+++++.++|+|||++++.+...+..... . .+...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAES 199 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHH
Confidence 889999999999999999999999999999999998876544321100 0 00011
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
...+++.+++.++|+++||+++++......
T Consensus 200 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 200 IRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred HHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 123567899999999999999999887543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-20 Score=137.44 Aligned_cols=95 Identities=35% Similarity=0.563 Sum_probs=87.0
Q ss_pred EEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHH
Q 019479 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 197 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~ 197 (340)
||+|||+|..+..+++. ++.+|+++|+++.+++.++++....++.++.+|++++|+++++||+|++..+++|++++..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999998 78999999999999999999988778889999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcEEEE
Q 019479 198 IKEAYRVLKIGGKACV 213 (340)
Q Consensus 198 l~~~~~~LkpgG~l~i 213 (340)
++++.|+|||||++++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=154.47 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=122.3
Q ss_pred HhhhhhhhhhhhhcccC------CCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 76 AFWFYRFLSIVYDHVIN------PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
....|+..+..|+.... ...|...+...+.... .++.+|||||||+|..+..+++.+ +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~---~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC---GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc---CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34567777788876421 1124333334333322 246799999999999999999886 5799999999999
Q ss_pred HHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH-h----
Q 019479 150 LAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-S---- 224 (340)
Q Consensus 150 ~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~---- 224 (340)
++.|+++ ..++++|++++|+++++||+|++..+++|++|+..+++++.|+|||.. .+.+...+.... .
T Consensus 87 l~~a~~~-----~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~ 159 (226)
T PRK05785 87 LKMNLVA-----DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLS 159 (226)
T ss_pred HHHHHhc-----cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHH
Confidence 9999864 246789999999999999999999999999999999999999999943 222222221111 0
Q ss_pred ---------------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 225 ---------------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 225 ---------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.++......+.+.+++.++++++| ..++.+.+.
T Consensus 160 ~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 160 FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEcc
Confidence 112222233778999999999974 656666553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=171.01 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=126.6
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccE
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
+++.+.. .++.+|||||||+|..+..+++.+ +.+|+|+|+|+.+++.|+++.. ..+++++++|+...++++++||+
T Consensus 258 l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEE
Confidence 3444433 467899999999999999998875 7799999999999999987743 24689999999888888889999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc----hhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT----FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|++..+++|+.|+..++++++++|||||++++.+..... .....++......+.+.+++.++++++||++++++..
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 999999999999999999999999999999998754321 2222222222234678999999999999999998887
Q ss_pred CCccc
Q 019479 258 GPKWY 262 (340)
Q Consensus 258 ~~~~~ 262 (340)
...+.
T Consensus 416 ~~~~~ 420 (475)
T PLN02336 416 TDQFL 420 (475)
T ss_pred hHHHH
Confidence 76543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-20 Score=150.49 Aligned_cols=133 Identities=30% Similarity=0.390 Sum_probs=105.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|+++.+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 47889999999999999999776 5699999999999988 23344444444444577899999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH-----hhh--HhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF-----FAD--VWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+|+..+++++.++|||||++++.++.......... ... ....+++.+++.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887542111111 011 223467999999999999999876
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=154.82 Aligned_cols=147 Identities=29% Similarity=0.426 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++ ...++++++.+|++++++++++||+|+++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 478999999999999988777764 346899999999999999976 3346889999999988888889999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH--hhhHh----hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF--FADVW----MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+++.++...+++++.++|||||++++.+........... ....+ ....+.+++.++|+++||..+++....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEecc
Confidence 999999999999999999999999997654322111110 11111 124578999999999999998875543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=146.66 Aligned_cols=136 Identities=27% Similarity=0.476 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCccchHHHHHH-HhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
+++.+|||+|||+|.++..++ +..++.+++|+|+|+.+++.|+++ ...++++|+++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 367899999999999999999 456789999999999999999985 44568999999998876 44 789999999
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------HhhhHhhcCC---CHHHHHHHHHHCC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------FFADVWMLFP---KEEEYIEWFQKAG 248 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~l~~aG 248 (340)
.+++++.++..+++++.+.|++||.+++.+.......... .....+.... +.+++..+|++||
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 9999999999999999999999999999877622111111 1112222233 6788888888887
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=159.32 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH--h-CC-CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--K-EP-LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~--~-~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++.. ...|+|+|+|+.++..++. + .. ..++.++.+|++++++ +++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 67899999999999999999983 3479999999999876543 2 22 3579999999999887 7789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhh-HhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFAD-VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+|+.|+..++++++++|+|||.+++........ ...++... .....++.+++.++|+++||+++++......
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t 278 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVT 278 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 999999999999999999999998864322211 11111110 0112458999999999999999999887654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=149.99 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=123.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh--CCCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~--~~~~~i~~~~~d~~~~~~~ 175 (340)
.++..++..... .++.+|||+|||+|.++..+++.+ |..+++++|+++.+++.++++ ....++++..+|+...++.
T Consensus 6 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 6 RYRARTFELLAV-QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC
Confidence 344445555544 468899999999999999999987 668999999999999999887 3346789999999888888
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch--------hHhhHhhhHh---hcCCCHHHHHHHH
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF--------WLSRFFADVW---MLFPKEEEYIEWF 244 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~l 244 (340)
+++||+|++..+++|+.++..+++++.++|||||.+++.++..... .......... .......++.+++
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 8899999999999999999999999999999999999887532110 1111111111 1223467899999
Q ss_pred HHCCCcEEEEEEeC
Q 019479 245 QKAGFKDVKLKRIG 258 (340)
Q Consensus 245 ~~aGF~~v~~~~~~ 258 (340)
+++||+++++....
T Consensus 165 ~~aGf~~~~~~~~~ 178 (241)
T PRK08317 165 REAGLTDIEVEPYT 178 (241)
T ss_pred HHcCCCceeEEEEE
Confidence 99999988776653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=155.32 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999988884 478999999999999999998743 24799999999887653 48999999
Q ss_pred CcccccCCH--HHHHHHHHHhcccCcEEEEEccCCC-chhHhhHhhhH------------------------hhcCCCHH
Q 019479 186 GSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYP-TFWLSRFFADV------------------------WMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~ 238 (340)
.++|++++. ..++++++++|||||.+++.+.... ........... .....+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999654 4799999999999999999864322 11111000000 01134789
Q ss_pred HHHHHHHHCCCcEEEE
Q 019479 239 EYIEWFQKAGFKDVKL 254 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~ 254 (340)
+..++|+++||+.+++
T Consensus 213 ~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 213 THKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHcCchhHHH
Confidence 9999999999996543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=156.43 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=119.1
Q ss_pred CCchHHHH-HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH---hC-CCCCcEEEEcC
Q 019479 94 GHWTEDMR-DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KE-PLKECTIIEGD 168 (340)
Q Consensus 94 ~~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~---~~-~~~~i~~~~~d 168 (340)
..|...+. ..++..... .++++|||||||+|.++..++... ...|+|+|+|+.++..++. .. ...++.+...+
T Consensus 102 ~e~~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ 179 (314)
T TIGR00452 102 SEWRSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLG 179 (314)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECC
Confidence 34444433 234444433 367899999999999999988873 3579999999999876532 22 23568888899
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhh-HhhcCCCHHHHH
Q 019479 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFAD-VWMLFPKEEEYI 241 (340)
Q Consensus 169 ~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ 241 (340)
+++++.. .+||+|++..+++|+.++..+|++++++|||||.|++.+...... ...++... .....++.+++.
T Consensus 180 ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~ 258 (314)
T TIGR00452 180 IEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALK 258 (314)
T ss_pred HHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHH
Confidence 9888753 479999999999999999999999999999999999875432211 01111100 011245899999
Q ss_pred HHHHHCCCcEEEEEEeCCc
Q 019479 242 EWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 242 ~~l~~aGF~~v~~~~~~~~ 260 (340)
++|+++||+.+++......
T Consensus 259 ~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 259 NWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHCCCeEEEEEeccCC
Confidence 9999999999998877543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=148.75 Aligned_cols=147 Identities=23% Similarity=0.275 Sum_probs=116.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
....+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.. ...++++|++.+++++++|
T Consensus 30 ~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCCcE
Confidence 33444444432 35689999999999999988875 6899999999999999997743 3578999999988888899
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH-hhHhh-----hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-SRFFA-----DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
|+|+++.++++.+|+..+++++.++|||||.+++..+....... ..... .....+.+.+++.+++...|++.
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 99999999999999999999999999999999998766543321 11111 11234678999999999998874
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=148.34 Aligned_cols=143 Identities=28% Similarity=0.331 Sum_probs=119.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
.+.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++..++||..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888899999999999999998765 488999999998888888999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEccCCCchhHhh-HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++..+++++.++|||||.+++..+......... ........+.+.+++.+++.++ |..+.+...
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 999999999999999999999876655432211 1121334577899999999998 987766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-19 Score=149.95 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=112.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----C----CcEEEEcCCCCCCCCCCCccEEEe
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~----~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+++|||+|||+|.++..+++. ++.|+|+|+++.+++.|++.... . ++++.+.|++.. .+.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 588999999999999999998 89999999999999999987321 1 356677777764 345999999
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc------hhHhhHhhh-------HhhcCCCHHHHHHHHHHCCCcE
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT------FWLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
..+++|+.|++.+++.+.+.|||||.+++.+.+... .+....... .|..|.+++++..+++.+++++
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 112222222 4666889999999999999987
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
..+...
T Consensus 245 ~~v~G~ 250 (282)
T KOG1270|consen 245 NDVVGE 250 (282)
T ss_pred hhhhcc
Confidence 766554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=144.35 Aligned_cols=147 Identities=30% Similarity=0.440 Sum_probs=119.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ..+++++.+|+.+.++..++||+|++..++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 6789999999999999999998765 699999999999999998753 35689999999888777788999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchh---------Hhh-----------------HhhhHhhcCCCHHHHHHHH
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW---------LSR-----------------FFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~l 244 (340)
..+...+++++.+.|+|||++++.+...+... ... ++...+..+.+.+++.++|
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999998765433210 000 0011112356889999999
Q ss_pred HHCCCcEEEEEEeCC
Q 019479 245 QKAGFKDVKLKRIGP 259 (340)
Q Consensus 245 ~~aGF~~v~~~~~~~ 259 (340)
+++||++++++.+..
T Consensus 199 ~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 199 KEAGFEEVRYRSLTF 213 (223)
T ss_pred HHcCCccceeeeeec
Confidence 999999998888753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=151.71 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=113.7
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
.+.+++.+.+ ++|.+|||||||.|.++..+++++ +++|+|+.+|+++.+.++++.. ..++++...|..+++
T Consensus 51 ~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3455666655 589999999999999999999998 8899999999999999987733 245889999998764
Q ss_pred CCccEEEecCccccc--CCHHHHHHHHHHhcccCcEEEEEccCCCch-----------hHhhHhhhHhhcCCCHHHHHHH
Q 019479 177 DYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPVYPTF-----------WLSRFFADVWMLFPKEEEYIEW 243 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 243 (340)
.+||.|++..+++|+ .+...+++++.+.|||||++++........ +..+++.+.. ..++..++...
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~ 204 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRA 204 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHH
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHH
Confidence 389999999999999 456799999999999999999875443322 2222221111 24578899999
Q ss_pred HHHCCCcEEEEEEeCCccccccccc
Q 019479 244 FQKAGFKDVKLKRIGPKWYRGVRRH 268 (340)
Q Consensus 244 l~~aGF~~v~~~~~~~~~~~~~~~~ 268 (340)
++++||++.++..++.++....+.+
T Consensus 205 ~~~~~l~v~~~~~~~~hY~~Tl~~W 229 (273)
T PF02353_consen 205 AEDAGLEVEDVENLGRHYARTLRAW 229 (273)
T ss_dssp HHHTT-EEEEEEE-HHHHHHHHHHH
T ss_pred HhcCCEEEEEEEEcCcCHHHHHHHH
Confidence 9999999999999987665444433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=150.12 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|.++..+++.+ |+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 367899999999999999999864 67899999999999999998732 24689999999887654 48999999
Q ss_pred CcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCc-hhHhhHhhhH------------------------hhcCCCHH
Q 019479 186 GSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPT-FWLSRFFADV------------------------WMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~~~~------------------------~~~~~~~~ 238 (340)
.++||+.+ ...++++++++|||||.+++.+..... .......... .....+.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 99999864 368999999999999999998764321 1111100000 11245899
Q ss_pred HHHHHHHHCCCcEEE
Q 019479 239 EYIEWFQKAGFKDVK 253 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~ 253 (340)
++.++++++||..++
T Consensus 210 ~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 210 THKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHcCCchHH
Confidence 999999999999654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=146.21 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=113.1
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
..++..... .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+. +.++||+
T Consensus 21 ~~ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 21 RDLLARVPL-ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred HHHHhhCCC-cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCccE
Confidence 334444443 4678999999999999999999988899999999999999999875 56889999997754 4568999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh----------Hhhh---H---hhcCCCHHHHHHHHH
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR----------FFAD---V---WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------~~~~---~---~~~~~~~~~~~~~l~ 245 (340)
|+++.++||++|...+++++.++|||||++++..+......... +... . ...+.+...+.+++.
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998754321111000 0000 0 112457788999999
Q ss_pred HCCCcE
Q 019479 246 KAGFKD 251 (340)
Q Consensus 246 ~aGF~~ 251 (340)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=133.55 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=86.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCC-CCCCCCCCCccEEEecC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDA-EDLPFPTDYADRYVSAG- 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~- 186 (340)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.++++. ..++++++++|+ .... ..+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence 478999999999999999999778999999999999999999885 347899999999 4333 345599999999
Q ss_pred ccccc---CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYW---PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~---~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++++ ++..++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 345689999999999999999874
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=142.60 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=104.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++. ...++++.+.|+.++++ +++||+|++..++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh
Confidence 5689999999999999999987 789999999999999998763 23468889999987765 45799999999999
Q ss_pred ccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+++ +...+++++.++|||||++++........... .......++.+++.+.++ ||++++..+.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~---~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---TVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---CCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 876 34689999999999999976653222111000 000112357888998887 9998877543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=142.92 Aligned_cols=162 Identities=25% Similarity=0.308 Sum_probs=126.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~~~ 177 (340)
+.+++.+.+ ++|++|||||||.|.+++.+++++ +.+|+|+++|+++.+.+++++. . .+++++..|..+++ +
T Consensus 62 ~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 62 DLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 344455554 689999999999999999999998 8999999999999999998632 2 47889999987754 4
Q ss_pred CccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhH---hhHhhhHhh---cCCCHHHHHHHHHHCCC
Q 019479 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL---SRFFADVWM---LFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~l~~aGF 249 (340)
.||-|++..+++|+.. .+.+++.+.++|+|||++++.....+.... ..++..... ..++..++.+..+++||
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~ 216 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGF 216 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCc
Confidence 4999999999999966 789999999999999999987655443211 122222111 14578999999999999
Q ss_pred cEEEEEEeCCccccccccc
Q 019479 250 KDVKLKRIGPKWYRGVRRH 268 (340)
Q Consensus 250 ~~v~~~~~~~~~~~~~~~~ 268 (340)
.+.+.+.+..+..+....+
T Consensus 217 ~v~~~~~~~~hYa~Tl~~W 235 (283)
T COG2230 217 VVLDVESLRPHYARTLRLW 235 (283)
T ss_pred EEehHhhhcHHHHHHHHHH
Confidence 9999998887665444433
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=147.18 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=109.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++++|+.+++++|. +.+++.++++.. .++++++.+|+.+.+++ .+|+|++..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 4678999999999999999999999999999998 889999887632 25689999999765544 3799999999
Q ss_pred ccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch--hHhhHhhh----H-----hhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 188 IEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF--WLSRFFAD----V-----WMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 188 l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~----~-----~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+|++.+. ..++++++++|||||++++.+...... .....+.. . ...+.+.+++.++|+++||+.+++
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 9998765 479999999999999999987543211 11111111 0 112445799999999999998865
Q ss_pred E
Q 019479 255 K 255 (340)
Q Consensus 255 ~ 255 (340)
.
T Consensus 305 ~ 305 (306)
T TIGR02716 305 V 305 (306)
T ss_pred c
Confidence 3
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-17 Score=133.54 Aligned_cols=146 Identities=25% Similarity=0.293 Sum_probs=117.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
..++...+. ....+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++. ++++|..+|+.++. +..++|+
T Consensus 20 ~dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 20 RDLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcC-CCCccch
Confidence 344555554 3678999999999999999999999999999999999999998765 68899999998864 5677999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh----------------hcCCCHHHHHHHHH
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW----------------MLFPKEEEYIEWFQ 245 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~ 245 (340)
++++.++++++|....|.++...|.|||+|.+.-+.+............. ....+...+.++|.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999876554332222211111 11457888889998
Q ss_pred HCCCcE
Q 019479 246 KAGFKD 251 (340)
Q Consensus 246 ~aGF~~ 251 (340)
..+-++
T Consensus 176 ~~~~rv 181 (257)
T COG4106 176 PLACRV 181 (257)
T ss_pred ccccee
Confidence 876654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=143.45 Aligned_cols=146 Identities=23% Similarity=0.310 Sum_probs=110.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCC-cEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+++|||||||.|.++..++.+ +...|+|+|.++......+ +..+... +......++++|. .+.||.|+|.+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 7999999999999999999998 3467999999987655433 3343233 3333356678876 7789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh------HhhHhhhH-hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW------LSRFFADV-WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+|..+|-..|+++++.|+|||.|++.+...+... ..++.... ....++...+..|++++||+.+++......
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 9999999999999999999999998754433211 11111100 011468999999999999999999888643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=141.41 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=110.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|+++....++++...+...++..+++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 367899999999999988887642 3469999999999999999886666788888887777767789999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhH----------------hhhHhhcCCCHHHHHHHHHHCCC
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRF----------------FADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
+||+++.+ .+++++.++++ |.+++.+...+......+ .......+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99998864 79999999998 666666655442111000 00112346799999999999 99
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
++.....+.
T Consensus 216 ~~~~~~~~~ 224 (232)
T PRK06202 216 RVERQWPFR 224 (232)
T ss_pred eEEecccee
Confidence 987776654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=131.68 Aligned_cols=126 Identities=24% Similarity=0.268 Sum_probs=105.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
+++.+|||+|||+|..+..+++..++.+|+++|.++.+++.|+++. ..++++++++|+.+++. .++||+|+++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 3588999999999999999998888899999999999999998762 33469999999988765 67899999874
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.+...+++++++.|||||++++..... ...++.++.+..|+.+.++..+..
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEec
Confidence 4577899999999999999999885432 345677788888999888877753
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-17 Score=132.47 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcE-EEEcCCCCCC-CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECT-IIEGDAEDLP-FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~-~~~~d~~~~~-~~~~~fD~v~~~~~ 187 (340)
....|||||||||..-...-.. |+.+|+++|.++.|-+.+.+.+. ..++. |+.++.++++ +++++||.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456899999999986554433 68999999999999999987643 34566 9999999988 88999999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-----HhhHhhhHhhcCC----CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-----LSRFFADVWMLFP----KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+....|+.+.|+++.|+|+|||++++.+.....+. ..+.....|+... -..+..+.|+++-|+.++....+
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~ 234 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFN 234 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhccc
Confidence 99999999999999999999999999988766432 2233334343311 12455678999999998888775
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=138.68 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++.... ++.+...|+...++ +++||+|++..++|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4579999999999999999986 789999999999999998764322 36677788766554 357999999999998
Q ss_pred cCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 WPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 ~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++. ...+++++.++|||||++++.+........ ....+....+.+++.+++. +|+++...+..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~---~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~ 171 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP---CHMPFSFTFKEDELRQYYA--DWELLKYNEAV 171 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC---CCCCcCccCCHHHHHHHhC--CCeEEEeeccc
Confidence 853 458999999999999997665432211100 0011123468899999986 58888777543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=140.66 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.. ..+++|...|++++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 7899999999999999998743 23578888888654 578999999
Q ss_pred cCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh--------hcCCCHHHHHHHHHHCCCcEEEE
Q 019479 185 AGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW--------MLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 185 ~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
..+++|+++.. .+++.+.+ +.+||.++...+..............+ ..+.+.+++.++++++||+++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999987653 45666665 455555443322211111111111111 12347999999999999998877
Q ss_pred EEeCCcc
Q 019479 255 KRIGPKW 261 (340)
Q Consensus 255 ~~~~~~~ 261 (340)
+.....+
T Consensus 298 ~~~~~~~ 304 (315)
T PLN02585 298 EMTATQF 304 (315)
T ss_pred EEeecce
Confidence 6665444
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=133.90 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++..|+.+.+ ...++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36889999999999999998886 6789999999999999987632 235678888886654 345789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------hHhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------RFFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
++..++..+++.+.+.|+|||.+++..+........ .+.. ..+..+.+.+++.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543211100 0000 112336688999999999999999886
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=129.16 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=98.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|..+..++...+..+|+++|.|+.+++.++++ ...++++++++|++++. ..++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 47899999999999999998887778999999999999888765 33357999999998864 357899999875 3
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH---HHCCCcEEEEEEeCC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF---QKAGFKDVKLKRIGP 259 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~aGF~~v~~~~~~~ 259 (340)
.+...+++.+.++|+|||++++..... ...++.++. ...||+.++...+..
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccCC
Confidence 456678899999999999998874322 233444444 448999998887753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=126.38 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=107.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
...+..++..+.. .++.+|||+|||+|.++..+++..|+.+|+++|+++.+++.++++. ...+++++.+|... ++
T Consensus 17 ~~~r~~~~~~l~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 17 EEVRALALSKLEL-HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc
Confidence 3444444455544 3678999999999999999999888889999999999999998763 23568899888743 33
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
.++||+|++....+ ....+++++.+.|+|||++++..... .+.+++.+++++.||+.+++
T Consensus 95 -~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 95 -PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcceE
Confidence 35799999976654 34678999999999999998864321 24567888999999998777
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
..+.
T Consensus 155 ~~~~ 158 (187)
T PRK08287 155 VQLQ 158 (187)
T ss_pred EEEE
Confidence 6653
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=138.21 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... -++++...|+...++ +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 4469999999999999999986 78999999999999999876332 267888888876554 678999999999998
Q ss_pred cC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++ +...+++++.++|+|||++++.......... ........++..++.+.+.. |++++..+.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~~--~~i~~~~e~ 260 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQD--WEIVKYNEN 260 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence 86 3458999999999999997765432211100 01112234678999999964 998887644
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=132.18 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+.++|+.+++ ++||+|++..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 36889999999999999999886 67999999999999999987421 37899999998764 78999999999
Q ss_pred ccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh--------hcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW--------MLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|++. ...+++++.+++++++.+.+.... ............+ ..+.+.+++.++++++||+++.....
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKT-AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 988854 457899999999876665543221 1111111111111 12458899999999999999988776
Q ss_pred CCcc
Q 019479 258 GPKW 261 (340)
Q Consensus 258 ~~~~ 261 (340)
...+
T Consensus 208 ~~~~ 211 (219)
T TIGR02021 208 STGF 211 (219)
T ss_pred cccc
Confidence 5444
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=143.52 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=115.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+++++.|+++....++++...|..++ +++||.|++..+++|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 478899999999999999999875 679999999999999999886544678888888664 4689999999999998
Q ss_pred CC--HHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccc
Q 019479 192 PD--PQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 192 ~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 263 (340)
.+ ...+++++.++|||||++++........ +..+++.. .....+.+++.+.++ .||++.++..++.++..
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp-~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFP-NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecC-CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 54 4689999999999999999876443311 11111110 012457788887766 59999999888876654
Q ss_pred ccccc
Q 019479 264 GVRRH 268 (340)
Q Consensus 264 ~~~~~ 268 (340)
....+
T Consensus 320 TL~~W 324 (383)
T PRK11705 320 TLMAW 324 (383)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-17 Score=124.99 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=63.1
Q ss_pred EEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCC--CCCCCccEEEecCcccccC
Q 019479 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLP--FPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~ 192 (340)
||||||+|.++..+++.+|..+++++|+|+.|++.++++.. ..+......+..+.. ...++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999999989999999999999988876632 223333333333321 1225899999999999999
Q ss_pred CHHHHHHHHHHhcccCcEE
Q 019479 193 DPQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l 211 (340)
+...++++++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-17 Score=141.51 Aligned_cols=191 Identities=23% Similarity=0.331 Sum_probs=126.2
Q ss_pred CCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCC--CchHHHH-HHhccccCCCCCCCEEEEEcCc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPG--HWTEDMR-DEALEPADLFDRNMRVVDVGGG 123 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG 123 (340)
..+.....|..+.++++.+...+........+.|-...+.....+... ....... ..+...... .+..+|+|||+|
T Consensus 32 ~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~-~~~~~vvDvGGG 110 (241)
T PF00891_consen 32 ISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDF-SGFKTVVDVGGG 110 (241)
T ss_dssp TCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TTSSEEEEET-T
T ss_pred cCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccc-cCccEEEeccCc
Confidence 456667889999998887776665544443332222111111111111 0111111 222333333 466799999999
Q ss_pred cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHH
Q 019479 124 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEA 201 (340)
Q Consensus 124 ~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~ 201 (340)
+|.++..+++++|+.+++.+|+ |.+++.+++ .++++++.+|+. .+++. +|+|++.+++|+++|.+ .+|+++
T Consensus 111 ~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~ 183 (241)
T PF00891_consen 111 SGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNA 183 (241)
T ss_dssp TSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHH
Confidence 9999999999999999999999 999999998 589999999998 45555 99999999999998876 789999
Q ss_pred HHhcccC--cEEEEEccCCCch----hHh--hHhhhHh------hcCCCHHHHHHHHH
Q 019479 202 YRVLKIG--GKACVIGPVYPTF----WLS--RFFADVW------MLFPKEEEYIEWFQ 245 (340)
Q Consensus 202 ~~~Lkpg--G~l~i~~~~~~~~----~~~--~~~~~~~------~~~~~~~~~~~~l~ 245 (340)
++.|+|| |+|+|.+...+.. ... ..+.+.. -..+|.++|.++|+
T Consensus 184 ~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 184 AAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 9999999 9999998654321 111 0111211 22568889988874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=126.18 Aligned_cols=118 Identities=29% Similarity=0.281 Sum_probs=95.2
Q ss_pred EEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 141 TILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 141 ~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+|+|+|+.|++.|+++.. ..+++++++|++++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999986632 24699999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCchhHhh-------------------------HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 215 GPVYPTFWLSR-------------------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 215 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+...+...... ++......+.+.+++.++|+++||+.++.....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 77654321111 011111236789999999999999998776653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=124.06 Aligned_cols=141 Identities=18% Similarity=0.289 Sum_probs=112.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l~ 189 (340)
+++.+|||+|||.|.+...+.+. .+.+++|+|++++.+..+.+ .++.++++|+++ + .+++++||.||++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 47899999999999999998886 48999999999999888876 467899999965 4 48999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh------------hhHh-----hcCCCHHHHHHHHHHCCCcEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF------------ADVW-----MLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~-----~~~~~~~~~~~~l~~aGF~~v 252 (340)
++.+++.+|+++.|+ |...+++.++...+...-.+ ...| .++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999999777 56777777665432211111 1111 125589999999999999999
Q ss_pred EEEEeCCc
Q 019479 253 KLKRIGPK 260 (340)
Q Consensus 253 ~~~~~~~~ 260 (340)
+...+...
T Consensus 164 ~~~~~~~~ 171 (193)
T PF07021_consen 164 ERVFLDGG 171 (193)
T ss_pred EEEEEcCC
Confidence 98887654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=130.81 Aligned_cols=144 Identities=26% Similarity=0.303 Sum_probs=112.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCCCCC-CCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDLPFP-TDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l 188 (340)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... .++++...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999998886 56799999999999999876332 2588888998766533 3689999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-Hhh-----Hhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSR-----FFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~-----~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+++.++..+++++.++|+|||.+++......... ... ... ..+..+.+.+++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999988765432111 000 000 011235678999999999999999887
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=119.11 Aligned_cols=93 Identities=28% Similarity=0.405 Sum_probs=77.6
Q ss_pred EEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEec-Ccccc
Q 019479 117 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSA-GSIEY 190 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~ 190 (340)
|||+|||+|..+..+++.+ |..+++|+|+|+++++.++++.. ..+++++++|+.+++..+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 34899999999999999998863 347999999999988888899999995 55999
Q ss_pred cCCH--HHHHHHHHHhcccCc
Q 019479 191 WPDP--QRGIKEAYRVLKIGG 209 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG 209 (340)
+.+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8654 489999999999998
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=128.79 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|+++. +++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--CCCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 3678999999999999999998878899999999999999999764 457788999887 7788899999999999999
Q ss_pred CC--HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 192 PD--PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 192 ~d--~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+. ...+++++.+++ ++.+++.+...
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 52 357889999987 46777776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=127.78 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCC----CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDL----PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~----~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+++. ..|+.++.+|+... ++ .++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d- 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQD- 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEEC-
Confidence 47889999999999999999998766799999999999987765533 36899999998642 22 3469999853
Q ss_pred cccccCCH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.++ ..+++++.++|||||++++.-+.....+..... ...++..++++++||+.++.....+
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~-------~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK-------EIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH-------HHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 3333 346899999999999999942221100000000 0113445999999999999888754
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=125.81 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=103.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++.. +..++|+|+++++++.+++ .+++++++|+.+ + ++++++||+|+++.+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 56799999999999999887763 6788999999999999875 357888999865 4 366788999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-----------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+.|+..+++++.+.+++ +++..+........ .+.......+.+.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 99999999999887654 44443322111000 00011112367899999999999999998
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 8776
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=128.78 Aligned_cols=124 Identities=22% Similarity=0.115 Sum_probs=99.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCC-CCCC--CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDA-EDLP--FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~-~~~~--~~~~~fD~v~~~~ 186 (340)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++. ...+++++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999888889999999999999998763 336799999999 6655 6678899999876
Q ss_pred cccccC--------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 187 SIEYWP--------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 187 ~l~~~~--------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
...+.. ....+++++.++|||||.+++...... ...++.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135789999999999999998864321 23467778888998654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=146.23 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=91.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC--CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP--FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.|+++... .++.++++|..+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999988999999999999999999987432 45778899998776 778899999999999
Q ss_pred cccC-------------CHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 189 EYWP-------------DPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 189 ~~~~-------------d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++. +...++++++++|||||++++.+...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 8752 34689999999999999999987543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=121.27 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=101.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++.. ..+++++.+|+.+.. .++||+|+++..+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 45789999999999999999874 389999999999999998732 235788889986643 458999999988876
Q ss_pred cCC---------------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 191 WPD---------------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 191 ~~d---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
.++ ...+++++.++|||||++++...... ...++.+.+++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 643 24679999999999999988864332 36788899999999
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
+...+...+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 988877765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=128.91 Aligned_cols=146 Identities=32% Similarity=0.404 Sum_probs=109.9
Q ss_pred cCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEc
Q 019479 91 INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEG 167 (340)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~ 167 (340)
+.++..++.+...++.... ..+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++. ...++.++++
T Consensus 67 ~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 67 LIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred ccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3445555566666665543 2457999999999999999999988889999999999999998763 3346899999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCC--------------------------HHHHHHHHHHhcccCcEEEEEccCCCch
Q 019479 168 DAEDLPFPTDYADRYVSAGSIEYWPD--------------------------PQRGIKEAYRVLKIGGKACVIGPVYPTF 221 (340)
Q Consensus 168 d~~~~~~~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 221 (340)
|+.+ ++++++||+|+++-.+....+ ...+++++.++|+|||++++...
T Consensus 145 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----- 218 (251)
T TIGR03534 145 DWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----- 218 (251)
T ss_pred chhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----
Confidence 9966 445678999998644332110 13578899999999999988632
Q ss_pred hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 222 WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+...+++.++++++||+.+++..
T Consensus 219 ------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 12457788999999999877644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-16 Score=128.95 Aligned_cols=187 Identities=19% Similarity=0.170 Sum_probs=129.2
Q ss_pred hhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 78 WFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
..|+.+++.++..+-.. +-......+.+.....- +-.++||+|||||..+..+... ..+.+|+|+|+.|+++|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHh
Confidence 34556666666543322 22333444445444432 3689999999999999999887 5789999999999999998
Q ss_pred hCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc
Q 019479 156 KEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML 233 (340)
Q Consensus 156 ~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 233 (340)
+-..+. ..+.++..+ + ..++.||+|....|+.++-+.+.++-.+...|+|||.+.++....+..+. -...+....
T Consensus 166 Kg~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRY 242 (287)
T ss_pred ccchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhh
Confidence 744332 223333211 1 35678999999999999999999999999999999999998654443321 011111112
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEeCCcccccccccce
Q 019479 234 FPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
Q Consensus 234 ~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~ 270 (340)
-.+..-+..+++..||++++++++.-+...+....+.
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~ 279 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGI 279 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCc
Confidence 2466778899999999999999987655544444443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=143.37 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=109.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCC--CCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAE--DLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~--~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++... .++++++++|+. .+++++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 5679999999999999999987 5699999999999998876532 367899999995 3567788999999999999
Q ss_pred ccCCH--HHHHHHHHHhcccCcEEEEEccCCCch-hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 190 YWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 190 ~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
|+++. ..+++++.++|||||++++.+...... ....... ...+++...|.+++.++||......
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNN--PTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCC--CCeecChHHHHHHHHHheeccCCCC
Confidence 99874 589999999999999999987543321 0111100 1113467899999999999876443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=124.35 Aligned_cols=137 Identities=14% Similarity=0.069 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC-C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-~ 176 (340)
++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5679999999999999999998 899999999999999864421 124688999999887632 4
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 177 DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++||.|+-..+++|++.. ...++.+.++|||||++++........... .. ....+.+++.+++.. +|++..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~---gp--p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA---GP--PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC---Cc--CCCCCHHHHHHHhcC-CceEEEE
Confidence 579999999999998644 368999999999999877765433211100 11 124688999998863 5665555
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=127.27 Aligned_cols=145 Identities=21% Similarity=0.317 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 36789999999999999999887 56799999999999999987322 468899998543 4578999999999
Q ss_pred ccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH--------hhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV--------WMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|+++. ..+++++.+.+++++.+ ...+.............. ...+.+.+++.++++++||++++...+
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 9888755 47888888876544433 322211111111111111 112457899999999999999999887
Q ss_pred CCccc
Q 019479 258 GPKWY 262 (340)
Q Consensus 258 ~~~~~ 262 (340)
...++
T Consensus 216 ~~~~~ 220 (230)
T PRK07580 216 SSGFY 220 (230)
T ss_pred cchhH
Confidence 65443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=129.48 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=96.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
...+|||+|||+|.++..+++.++. ..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5578999999999999999887653 47999999999999998764 57889999999999999999999986541
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc--CCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML--FPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..++++.|+|||||++++..+.....+..+.. .+.. .... ..-...||+.++.+.+.
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~--~~~~~~~~~~----~~~~~~gF~~~~~~~~~ 220 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGL--IYDEVRLHAP----EAEQLEGFELQHSERLA 220 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH--hccccccccc----chhhccCCCeeeEEEEE
Confidence 24689999999999999987765433221111 1110 0110 11134689988777764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=131.20 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccch----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhCC-------------------------
Q 019479 113 RNMRVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEP------------------------- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~------------------------- 158 (340)
++.+|+|+|||+|. +++.+++..+ +.+|+|+|+|+.+++.|++..-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 46799999999996 4666666543 4789999999999999997531
Q ss_pred -----CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 159 -----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 159 -----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+++|.++|+.+.+.+.++||+|+|.++++|++++. +++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1368999999988776778999999999999997554 79999999999999999864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-15 Score=123.23 Aligned_cols=167 Identities=23% Similarity=0.194 Sum_probs=123.1
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCCC--CCcEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KECTI 164 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~--~~i~~ 164 (340)
..+..++|...-...+...... ...+|||||||.|.....+.+..+. ..+++.|.|+.+++..++.... .++..
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEA 126 (264)
T ss_pred cccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcc
Confidence 3455667755444444444332 2338999999999999999998876 8999999999999999987432 34555
Q ss_pred EEcCCCC----CCCCCCCccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh---------
Q 019479 165 IEGDAED----LPFPTDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD--------- 229 (340)
Q Consensus 165 ~~~d~~~----~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--------- 229 (340)
.+.|+.. -+...+++|+|++.++|..+.. ...++.+++++|||||.|++-+....+....++...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYV 206 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYV 206 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEE
Confidence 5566633 2456789999999999987743 358999999999999999999877665443332211
Q ss_pred ----HhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 230 ----VWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 230 ----~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+...+++.+++.++++++||..++....
T Consensus 207 RgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 207 RGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred ccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 1113679999999999999998776544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=112.45 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=86.7
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~~~~ 177 (340)
..++..... .++.+|||+|||+|.++..+++..|+.+|+++|+++.+++.++++. ...+++++.+|+.. ++...+
T Consensus 9 ~~~~~~~~~-~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 9 ALTLSKLRL-RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334444433 3567999999999999999999988889999999999999998762 33578888888764 333346
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+||+|++..... ....+++++.+.|||||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999976544 34589999999999999998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-14 Score=130.77 Aligned_cols=165 Identities=21% Similarity=0.125 Sum_probs=120.0
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 150 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~ 150 (340)
+|.-+...||+..-..-...+.++..++.+.+.++.... ++.+|||+|||+|..+..++...|+.+|+++|+|+.++
T Consensus 212 qYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL 288 (423)
T PRK14966 212 AYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL 288 (423)
T ss_pred eeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 444455566665544545566777888888887776543 45699999999999999999888889999999999999
Q ss_pred HHHHHhCC--CCCcEEEEcCCCCCCC-CCCCccEEEecCccccc---------------------CC----HHHHHHHHH
Q 019479 151 AKAKQKEP--LKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW---------------------PD----PQRGIKEAY 202 (340)
Q Consensus 151 ~~a~~~~~--~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~---------------------~d----~~~~l~~~~ 202 (340)
+.|+++.. ..+++++++|+.+..+ ..++||+|+++--...- .| ...+++.+.
T Consensus 289 e~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 289 ETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 99998742 2368999999865332 24579999996533111 01 125666777
Q ss_pred HhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 203 RVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+.|+|||.+++.... ...+.+.+++++.||..+++.
T Consensus 369 ~~LkpgG~lilEiG~-----------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF-----------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc-----------------cHHHHHHHHHHHCCCcEEEEE
Confidence 899999998765321 135778899999999877664
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=118.27 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=98.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.-.++||+|||.|.++..++.+ ..+++++|+|+.+++.|+++.. .++|++++.|+.+.. +.++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcC
Confidence 4578999999999999999998 5799999999999999999955 478999999997643 67899999999999999
Q ss_pred CCH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 PDP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+. ..+++++.+.|+|||.|++-.... .....|......+.+.++|.+. |..|+...+
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------CcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 764 368999999999999999876421 1222344445778888888874 555555554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=123.35 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=85.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC---CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP---FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~ 186 (340)
...+|||||||+|.++..+++.+|...|+|+|+++.+++.|+++. ...|++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999999999998652 3358999999997643 4556899999876
Q ss_pred cccccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 187 SIEYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+.... ..+++++.++|||||.+++....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999887643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=126.48 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=117.2
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
.+|..+..+||+..-..-...+.|+..++.+...++.......+..+|||+|||+|..+..++...++.+|+++|+|+.+
T Consensus 71 l~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~a 150 (284)
T TIGR00536 71 VAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDA 150 (284)
T ss_pred HHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHH
Confidence 34444555555544344445666777788887776654322223369999999999999999999888899999999999
Q ss_pred HHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecC-------------cccccC------------CHHHHHHH
Q 019479 150 LAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAG-------------SIEYWP------------DPQRGIKE 200 (340)
Q Consensus 150 ~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~-------------~l~~~~------------d~~~~l~~ 200 (340)
++.|+++. .. .+++++++|+.+ +++..+||+|+++- +..|-+ ....++++
T Consensus 151 l~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~ 229 (284)
T TIGR00536 151 LAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL 229 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH
Confidence 99999873 22 348999999865 33445799999862 222221 23467888
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH-HCCCcEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ-KAGFKDVKL 254 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGF~~v~~ 254 (340)
+.+.|+|||++++..... ..+.+.+++. +.||..+++
T Consensus 230 a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 230 APDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 999999999998764321 2456667777 468976655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-14 Score=125.29 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=118.0
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
.+|..+..+|++..-.+....+.++..++.+....+.......++.+|||+|||+|.++..+++..++.+|+++|+|+.+
T Consensus 78 l~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~a 157 (284)
T TIGR03533 78 VAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDA 157 (284)
T ss_pred HHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHH
Confidence 44555556666654445556666777776666665542111124579999999999999999999888999999999999
Q ss_pred HHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc------cccC-----C--------------HHHHHHH
Q 019479 150 LAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI------EYWP-----D--------------PQRGIKE 200 (340)
Q Consensus 150 ~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l------~~~~-----d--------------~~~~l~~ 200 (340)
++.|+++.. ..+++++++|+.+ ++++++||+|+++--. .++. + ...++++
T Consensus 158 l~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~ 236 (284)
T TIGR03533 158 LAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE 236 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH
Confidence 999998732 2468999999854 2345679999986211 1110 1 1367889
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+.++|+|||++++.... +.+.+.+++.++||.-.....
T Consensus 237 a~~~L~~gG~l~~e~g~------------------~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 237 AADHLNENGVLVVEVGN------------------SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred HHHhcCCCCEEEEEECc------------------CHHHHHHHHHhCCCceeeecC
Confidence 99999999999876431 345677888888987654433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-13 Score=118.47 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=104.5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAED 171 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~ 171 (340)
.+.++...+..... .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++ .. ..++.++.+|+.+
T Consensus 25 ~~~~r~~~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 25 KEEIRALALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 34555555555554 478899999999999999988764 457999999999999999876 22 3578899999865
Q ss_pred C-CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 172 L-PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 172 ~-~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
. +...+.||+|++.. ...+...+++++.++|||||++++..... .+..+..+.|++.||.
T Consensus 104 ~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 104 ILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------ETVNNALSALENIGFN 164 (198)
T ss_pred hHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------HHHHHHHHHHHHcCCC
Confidence 3 33346799999854 34467789999999999999998743211 1356778899999994
Q ss_pred EEEEEEe
Q 019479 251 DVKLKRI 257 (340)
Q Consensus 251 ~v~~~~~ 257 (340)
.++..+
T Consensus 165 -~~~~~~ 170 (198)
T PRK00377 165 -LEITEV 170 (198)
T ss_pred -eEEEEE
Confidence 454444
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=112.23 Aligned_cols=139 Identities=20% Similarity=0.265 Sum_probs=110.2
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC-
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED- 171 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~- 171 (340)
..+.++...+..+.. .++.+++|||||+|..+..++...|..+|+++|-++++++..+++ +..+|++++.+|+-+
T Consensus 18 TK~EIRal~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 345566666666665 588999999999999999999888899999999999999888866 557899999999955
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC-c
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF-K 250 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF-~ 250 (340)
++ ...++|.|+.... . +.+.+++.+...|||||+|++.-.... +.....+++++.|| +
T Consensus 97 L~-~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LP-DLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hc-CCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 33 2226999999887 3 667899999999999999988754321 45567789999999 5
Q ss_pred EEEEEE
Q 019479 251 DVKLKR 256 (340)
Q Consensus 251 ~v~~~~ 256 (340)
++++..
T Consensus 156 i~~v~i 161 (187)
T COG2242 156 IVQVQI 161 (187)
T ss_pred EEEEEe
Confidence 555443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-14 Score=124.87 Aligned_cols=148 Identities=30% Similarity=0.329 Sum_probs=110.3
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTII 165 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~ 165 (340)
..+.++..++.+.+.++..... .++.+|||+|||+|..+..++...+..+++++|+|+.+++.++++.. ..++.++
T Consensus 85 ~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~ 163 (275)
T PRK09328 85 GVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFL 163 (275)
T ss_pred CceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEE
Confidence 3455666677777766644332 36789999999999999999999888999999999999999998743 3578999
Q ss_pred EcCCCCCCCCCCCccEEEecCccccc--------------------------CCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 166 EGDAEDLPFPTDYADRYVSAGSIEYW--------------------------PDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 166 ~~d~~~~~~~~~~fD~v~~~~~l~~~--------------------------~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+|+.+ ++..++||+|+++-..... .....+++++.++|+|||++++....
T Consensus 164 ~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-- 240 (275)
T PRK09328 164 QGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-- 240 (275)
T ss_pred EccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--
Confidence 999855 2335789999986332211 11236788888999999999885311
Q ss_pred chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 220 TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
...+++.+++++.||..+++.
T Consensus 241 ---------------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 241 ---------------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred ---------------hHHHHHHHHHHhCCCceeEEe
Confidence 124568889999999876663
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-14 Score=125.23 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=85.2
Q ss_pred CCCEEEEEcCccchHH-HH-HHHhCCCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTT-LG-IVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~-~~-l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
++++|+|||||.|.++ .. ++..+|+.+++++|.++++++.|++... .++++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988443 33 3346788999999999999999998763 256999999997754234679999999
Q ss_pred Cccccc--CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYW--PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++++ .++.++++++.+.|+|||.+++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 588899999999999999998875
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=122.60 Aligned_cols=169 Identities=23% Similarity=0.170 Sum_probs=118.4
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
..+|.-+..+|++..-......+.++..++.+.+.++........+.+|||+|||+|.++..+++..++.+|+++|+|+.
T Consensus 42 Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~ 121 (251)
T TIGR03704 42 PLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA 121 (251)
T ss_pred CHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH
Confidence 44555566666554444445555566667777776665443222346899999999999999998888889999999999
Q ss_pred HHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCcccc------cC----------------C----HHHHHHH
Q 019479 149 QLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIEY------WP----------------D----PQRGIKE 200 (340)
Q Consensus 149 ~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~------~~----------------d----~~~~l~~ 200 (340)
+++.|+++....+++++++|+.+. + ...++||+|+++--... ++ | ...+++.
T Consensus 122 al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~ 201 (251)
T TIGR03704 122 AVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG 201 (251)
T ss_pred HHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence 999999886544568899998652 2 11357999998743321 10 1 1367777
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.++|||||++++..... ..+++.+++++.||...-.
T Consensus 202 a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 202 APDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceee
Confidence 889999999998774321 3456788899999985433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=120.03 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=95.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.++||+|||.|+.+..++++ |..|+++|.|+..++.+++.+. .-.++..+.|+.+..++ +.||+|++..++++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5679999999999999999998 9999999999999998876532 22378899999877654 67999999888988
Q ss_pred cCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++.. ..+++.+.+.++|||++++............ ......+.+.++.+.+. ||++++..+-
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~---~~~~f~~~~~EL~~~y~--dW~il~y~E~ 170 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP---SPFPFLLKPGELREYYA--DWEILKYNED 170 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S---S--S--B-TTHHHHHTT--TSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC---CCCCcccCHHHHHHHhC--CCeEEEEEcc
Confidence 8544 4789999999999999888643221111000 01111335677777775 7998876543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=118.60 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC-C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-~ 176 (340)
++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5679999999999999999997 899999999999999875321 124688999999887533 2
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 177 DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.||.|+-..++++++.. ...++.+.++|||||++++........... .. ....+.+++.+++.. +|++..+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---gP--p~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---GP--PFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---CC--CCCCCHHHHHHHhcC-CceEEEe
Confidence 579999999999999644 378999999999999755543222111110 11 124689999999853 3776666
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=118.08 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCc
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYA 179 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~f 179 (340)
...+++.+|||||||+|.++..+++..+ ..+|+|+|+++ + ...++++++++|+.+.+ +.+++|
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 3345788999999999999999999863 47999999988 2 12257899999998743 567789
Q ss_pred cEEEecCcccccCCH-----------HHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPDP-----------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d~-----------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|++..+.++..++ ..+|+++.++|||||.+++...
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999998766655432 3589999999999999998654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=131.71 Aligned_cols=169 Identities=22% Similarity=0.193 Sum_probs=127.9
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCC-----------------------CCCCCEEEEEcCccc
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADL-----------------------FDRNMRVVDVGGGTG 125 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~vLDiGcG~G 125 (340)
..+|.-+..+||+..-.+-..++.|++.++.+++.++..... ..++.+|||+|||+|
T Consensus 71 PlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG 150 (506)
T PRK01544 71 PIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSG 150 (506)
T ss_pred CHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchh
Confidence 567777888899888888889999999999999887654320 113568999999999
Q ss_pred hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc-----------
Q 019479 126 FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY----------- 190 (340)
Q Consensus 126 ~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~----------- 190 (340)
..+..++..+|+.+|+++|+|+.+++.|+++.. ..+++++.+|+.+ .+..++||+|+++--...
T Consensus 151 ~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v 229 (506)
T PRK01544 151 CIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIET 229 (506)
T ss_pred HHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchh
Confidence 999999988888999999999999999998732 2468899999754 234567999999532211
Q ss_pred ---cC--------C----HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 191 ---WP--------D----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 191 ---~~--------d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
-+ | ...+++++.++|+|||.+++... +...+.+.+++.+.||..+++.
T Consensus 230 ~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------~~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 230 INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------FKQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------CchHHHHHHHHHhcCCCceEEE
Confidence 11 0 12467788899999999987522 1245678889999999876653
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=126.04 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=110.7
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcE
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECT 163 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~ 163 (340)
++..+.+......+...++..... +++.+|||+|||+|.++..++.. +.+++|+|+++.|++.++++. ...++.
T Consensus 157 ~R~~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~ 233 (329)
T TIGR01177 157 RRPFFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFF 233 (329)
T ss_pred cCCccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCe
Confidence 333445555555566666555544 47889999999999999887665 789999999999999988763 334578
Q ss_pred EEEcCCCCCCCCCCCccEEEecCcccc--------cCC-HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcC
Q 019479 164 IIEGDAEDLPFPTDYADRYVSAGSIEY--------WPD-PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLF 234 (340)
Q Consensus 164 ~~~~d~~~~~~~~~~fD~v~~~~~l~~--------~~d-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 234 (340)
+.++|+.++++.+++||+|+++-.+.. ..+ ...+++++.++|||||++++..+..
T Consensus 234 ~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~---------------- 297 (329)
T TIGR01177 234 VKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR---------------- 297 (329)
T ss_pred EEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC----------------
Confidence 999999998877889999999633221 111 3589999999999999998876532
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEe
Q 019479 235 PKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.++.++++++|| ++.....
T Consensus 298 ---~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 ---IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred ---CCHHHHHhhcCc-chheeee
Confidence 245578999999 7666554
|
This family is found exclusively in the Archaea. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=123.47 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=114.9
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccc-cCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEP-ADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
.+|..+..+|++..-.+-...+.++..++.+....+.. ... ....+|||+|||+|.++..++..+|+.+|+++|+|+.
T Consensus 90 l~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~ 168 (307)
T PRK11805 90 AAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD 168 (307)
T ss_pred HHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH
Confidence 45555555666544444455666777666666655432 221 1236899999999999999999988899999999999
Q ss_pred HHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc-------------cccCC------------HHHHHH
Q 019479 149 QLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI-------------EYWPD------------PQRGIK 199 (340)
Q Consensus 149 ~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l-------------~~~~d------------~~~~l~ 199 (340)
+++.|+++.. ..+++++++|+.+ .++.++||+|+++--. +|-+. ...+++
T Consensus 169 al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~ 247 (307)
T PRK11805 169 ALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA 247 (307)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH
Confidence 9999998742 2458999999854 2245679999986211 11111 136789
Q ss_pred HHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 200 EAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 200 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
++.+.|+|||++++.... +.+.+.+++.+.||.-.+...
T Consensus 248 ~a~~~L~pgG~l~~E~g~------------------~~~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 248 EAPDYLTEDGVLVVEVGN------------------SRVHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHhcCCCCEEEEEECc------------------CHHHHHHHHhhCCCEEEEecC
Confidence 999999999999875321 234566777778876655443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=113.24 Aligned_cols=127 Identities=25% Similarity=0.351 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCC--cEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE--CTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~--i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ..+ +.++.+|+.+ ++.+++||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 36789999999999999999988 7899999999999999987632 122 7888888865 33455899999876
Q ss_pred cccccC---------------------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 187 SIEYWP---------------------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 187 ~l~~~~---------------------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.+.... ....+++++.++|||||.+++..... ...+++.++++
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~ 162 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLE 162 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHH
Confidence 554311 12457999999999999998775421 24567889999
Q ss_pred HCCCcEEEEEEe
Q 019479 246 KAGFKDVKLKRI 257 (340)
Q Consensus 246 ~aGF~~v~~~~~ 257 (340)
++||+++.+...
T Consensus 163 ~~g~~~~~~~~~ 174 (188)
T PRK14968 163 KLGFEAEVVAEE 174 (188)
T ss_pred HCCCeeeeeeec
Confidence 999998766543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=115.91 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=114.9
Q ss_pred hhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCC-CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 77 FWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFD-RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
.+|++.++..|.+...-......+.+..++.+..+. .+.-|||||||+|..+..+.+. +...+|+|+|+.|++.|.+
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH
Confidence 345555666666533333444555555566555432 3678999999999999888776 7899999999999999997
Q ss_pred hCCCCCcEEEEcCC-CCCCCCCCCccEEEecCcccccC-------CHH----HHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 156 KEPLKECTIIEGDA-EDLPFPTDYADRYVSAGSIEYWP-------DPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 156 ~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~-------d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
+.-. -.++.+|+ +.+||..++||.||+...+.++- ++. .++..++.+|++|++.++........
T Consensus 91 ~e~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~-- 166 (270)
T KOG1541|consen 91 RELE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA-- 166 (270)
T ss_pred hhhh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--
Confidence 4221 35777888 56899999999999988877663 222 56888999999999998875432211
Q ss_pred hhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 224 SRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
..+.+.+....|||.---+.+.
T Consensus 167 ------------q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 167 ------------QIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred ------------HHHHHHHHHHhhccCCceeeec
Confidence 3455666777889885444443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=116.03 Aligned_cols=136 Identities=16% Similarity=0.053 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCC---CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDL---PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~---~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++... ...|+++|+++.+.+...+.. ..+|+.++..|+... ....++||+|++..
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 5788999999999999999999873 468999999987543333221 226899999998542 22345799999876
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHH----HHHHHHCCCcEEEEEEeCCc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY----IEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~aGF~~v~~~~~~~~ 260 (340)
. ..++...++.++.++|||||.++|........ .-.++++. .++|+++||+.++...+.+.
T Consensus 211 a--~pdq~~il~~na~r~LKpGG~~vI~ika~~id-----------~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 211 A--QPDQARIVALNAQYFLKNGGHFIISIKANCID-----------STAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred C--CcchHHHHHHHHHHhccCCCEEEEEEeccccc-----------cCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 4 23233456678999999999999852211100 01122222 37899999999999887643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=117.12 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=85.0
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFP 175 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~ 175 (340)
...+++.+.. .++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|+++.. . .+++++.+|..+....
T Consensus 61 ~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 61 VAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 3444444443 4678999999999999999988764 4699999999999999987632 2 3588999999764444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+||+|++..++++++ +++.+.|+|||+|++..
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 57899999998887664 57889999999998753
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=118.69 Aligned_cols=138 Identities=25% Similarity=0.278 Sum_probs=101.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcE----EEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECT----IIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~----~~~~d~~~~ 172 (340)
+..+.-+.++... .++.+|||+|||+|.+++..++. +..+|+|+|++|.+++.++++...+++. ....+....
T Consensus 148 TT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 148 TTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3444444444443 38999999999999999998887 4567999999999999999886555554 222222222
Q ss_pred CCCCCCccEEEecCcccccCCH-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+ ..++||+|+++=.. ++ ..+...+.+.+||||+++++..... ..+.+.+.++++||++
T Consensus 225 ~-~~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 225 P-ENGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred c-ccCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeE
Confidence 2 33589999987422 33 3678899999999999999975432 2567788999999999
Q ss_pred EEEEEeC
Q 019479 252 VKLKRIG 258 (340)
Q Consensus 252 v~~~~~~ 258 (340)
+++....
T Consensus 284 ~~~~~~~ 290 (300)
T COG2264 284 VEVLERE 290 (300)
T ss_pred eEEEecC
Confidence 9887764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=112.62 Aligned_cols=103 Identities=28% Similarity=0.383 Sum_probs=83.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+..+|||+|||+|..+..+++..|..+|+++|+++.+++.++++. ...+++++..|..+. .++++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 578999999999999999999988889999999999999998763 233488999998652 3468899999997766
Q ss_pred ccCC-----HHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPD-----PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d-----~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.-.+ .+.+++++.+.|||||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5543 35889999999999999977644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=119.08 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCC--C--CcEEEEcCCCC-CCCCCC----CccE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--K--ECTIIEGDAED-LPFPTD----YADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~--~i~~~~~d~~~-~~~~~~----~fD~ 181 (340)
.++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.++++... + ++.++++|+.+ +++... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3568999999999999999999875 58999999999999999877422 3 35678999976 333332 2345
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
+++..++++++.. ..+|++++++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5556778877543 47899999999999999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=111.95 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++... .++.++.+|+.+. +++++||+|+++-...
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 36789999999999999998876 345999999999999999876432 2577888998653 4567899999974333
Q ss_pred ccCC---------------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC
Q 019479 190 YWPD---------------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 190 ~~~d---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 248 (340)
.... .+.+++++.++|||||++++...... +..++.+.+++.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~----------------~~~~~~~~l~~~g 176 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS----------------GVERTLTRLSEAG 176 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc----------------CHHHHHHHHHHCC
Confidence 2111 24578899999999999988644321 3345667778888
Q ss_pred CcEEEEEE
Q 019479 249 FKDVKLKR 256 (340)
Q Consensus 249 F~~v~~~~ 256 (340)
|.......
T Consensus 177 ~~~~~~~~ 184 (223)
T PRK14967 177 LDAEVVAS 184 (223)
T ss_pred CCeEEEEe
Confidence 87554443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-13 Score=114.96 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=86.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
.+...++..+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++. ...+++++++|....+.
T Consensus 63 ~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344555555544 4789999999999999999988753 479999999999999999873 34679999999976555
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..++||+|++.....++ .+.+.+.|||||++++.
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 66789999998776544 34677899999999875
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-14 Score=124.18 Aligned_cols=206 Identities=18% Similarity=0.134 Sum_probs=139.4
Q ss_pred CCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCCC--chHHHHHHhccccCCCCCCCEEEEEcCcc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGH--WTEDMRDEALEPADLFDRNMRVVDVGGGT 124 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~vLDiGcG~ 124 (340)
.+.+.++.|..+.+.+..+...+...++...+-|....+.....++..+ .......++++...-+..-...+|+|+|.
T Consensus 109 ~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGi 188 (342)
T KOG3178|consen 109 TSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGI 188 (342)
T ss_pred cccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcH
Confidence 4567788899998888877777766666333444433333333222211 12223334444443344568899999999
Q ss_pred chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHH
Q 019479 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAY 202 (340)
Q Consensus 125 G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~ 202 (340)
|..+..+...||..+.+-+|+ +..++.++. .. ++|+.+.+|..+. .|. -|+|++.+++|||.|.+ ++|++|+
T Consensus 189 G~v~k~ll~~fp~ik~infdl-p~v~~~a~~-~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~ 262 (342)
T KOG3178|consen 189 GRVLKNLLSKYPHIKGINFDL-PFVLAAAPY-LA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCK 262 (342)
T ss_pred hHHHHHHHHhCCCCceeecCH-HHHHhhhhh-hc-CCcceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHH
Confidence 999999999988766666665 555555544 33 6688999999764 333 47999999999999886 8999999
Q ss_pred HhcccCcEEEEEccCCCc-hhHhh------HhhhHh-------hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 203 RVLKIGGKACVIGPVYPT-FWLSR------FFADVW-------MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~-~~~~~------~~~~~~-------~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..|+|||++++.+.+.+. ..... ...+.. -..++.+++..++.++||.+.++.-..
T Consensus 263 ~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 263 KSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTA 332 (342)
T ss_pred HhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEecc
Confidence 999999999999875553 11100 001111 114588999999999999988776553
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=117.96 Aligned_cols=123 Identities=25% Similarity=0.294 Sum_probs=90.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....++. +...+...+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 47889999999999999887765 3456999999999999999875433331 0001111122799999875432
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+++++.++|||||++++.+.... ..+++.+.+++.||++++....+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 234788999999999999999865321 35678889999999998877754
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=109.37 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=85.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~~ 175 (340)
....++..+.. .++.+|||+|||+|.++..+++..++.+|+++|+++.+++.++++. ...+++++.+|+.+ ++..
T Consensus 28 v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 28 VRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 33344555543 4778999999999999999988777889999999999999998763 33578999999854 2222
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+|.+++.. ..+...+++++.++|+|||++++....
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 23467766532 235678999999999999999988653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=113.64 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=84.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
....+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++ ...+++++++|..+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 33444555544 4789999999999999999998853 367999999999999999773 346799999999765434
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+||+|++.....++ ...+.+.|||||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 5689999988765544 35678899999999875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=116.35 Aligned_cols=165 Identities=24% Similarity=0.241 Sum_probs=118.5
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 150 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~ 150 (340)
+|.-+..+|+...-.....++.|+..++.+.+.++...... ..+|||+|||+|..++.++...|..+|+|+|+|+.++
T Consensus 70 ~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~--~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al 147 (280)
T COG2890 70 AYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL--DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL 147 (280)
T ss_pred hHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc--CCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH
Confidence 44444456666666677778888888888888866333321 1289999999999999999998889999999999999
Q ss_pred HHHHHhCCC---CCcEEEEcCCCCCCCCCCCccEEEecCcccccC-----------CH--------------HHHHHHHH
Q 019479 151 AKAKQKEPL---KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP-----------DP--------------QRGIKEAY 202 (340)
Q Consensus 151 ~~a~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-----------d~--------------~~~l~~~~ 202 (340)
+.|++++.. .++.++.+|+.+ + ..++||+|++|--.-.-+ +| ..++.++.
T Consensus 148 ~~A~~Na~~~~l~~~~~~~~dlf~-~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 148 ALARENAERNGLVRVLVVQSDLFE-P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHHHHHHHcCCccEEEEeeeccc-c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 999987443 345566667654 2 233899999973322111 12 16778888
Q ss_pred HhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC-CcEEEEEE
Q 019479 203 RVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG-FKDVKLKR 256 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~ 256 (340)
+.|+|||.+++.... ...+.+.+++.+.| |..+....
T Consensus 226 ~~l~~~g~l~le~g~-----------------~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 226 DILKPGGVLILEIGL-----------------TQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHcCCCcEEEEEECC-----------------CcHHHHHHHHHhcCCceEEEEEe
Confidence 999999998876432 24678899999999 55544443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=117.03 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++... .++.+...+.. ...+++||+|+++..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecC
Confidence 36789999999999999888765 456999999999999999987432 23455555532 234568999999765
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+ ....++.++.++|||||++++...... ..+++.+.+++. |+.+++...
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEecc
Confidence 43 235789999999999999999865321 346677788776 988776554
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-13 Score=123.13 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=83.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+.+|||+|||+|..+..+++++|..+|+++|.|+.+++.++++.. ..+++++..|.... +...+||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999999999999999999999999999999997632 13678888887542 24567999999877
Q ss_pred cccc---CC--HHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYW---PD--PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~---~d--~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+|.. .+ ..++++.+.++|+|||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7643 22 2478999999999999999985
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=113.03 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=99.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
...+|||+|||+|.++..++++.++.+|+++|+++.+++.++++. ++++++++|+.++. ...+||+|+++-.+++.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFE-SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhc-ccCCCcEEEEcCCccccC
Confidence 456999999999999999888766689999999999999999864 47899999998764 346799999988888753
Q ss_pred CH--------------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 193 DP--------------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 193 d~--------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
.. ...++....+|+|+|.+++.-...+ .++.-.+.+++.++++++||...
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------YYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------cccccCCHHHHHHHHHhcCcEec
Confidence 22 2455666788899998776632221 22334579999999999999854
Q ss_pred E
Q 019479 253 K 253 (340)
Q Consensus 253 ~ 253 (340)
-
T Consensus 211 ~ 211 (279)
T PHA03411 211 A 211 (279)
T ss_pred C
Confidence 3
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=111.38 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
....+|||+|||+|..+..++.+.+..++++||+++++.+.|++... .++++++++|+.++. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 35889999999999999999999877999999999999999998743 367999999997754 344579999998
Q ss_pred CcccccC------------------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC
Q 019479 186 GSIEYWP------------------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 186 ~~l~~~~------------------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 247 (340)
--+.... +.+..++.+.++|||||.+.++.+.. ...++.+++.+.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~ 185 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSY 185 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhc
Confidence 5554332 22378899999999999999885421 356788899999
Q ss_pred CCcEEEEEEeCCcc
Q 019479 248 GFKDVKLKRIGPKW 261 (340)
Q Consensus 248 GF~~v~~~~~~~~~ 261 (340)
+|...++..+.+.-
T Consensus 186 ~~~~k~i~~V~p~~ 199 (248)
T COG4123 186 NLEPKRIQFVYPKI 199 (248)
T ss_pred CCCceEEEEecCCC
Confidence 99999988886544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=107.48 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=95.2
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
.|+.+.+.|++... .|-..-++.++..+...++...|.|+|||.+.++..+.. ..+|..+|+-.
T Consensus 40 ~F~~YH~Gfr~Qv~--~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva----------- 103 (219)
T PF05148_consen 40 LFDIYHEGFRQQVK--KWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHHHC--TSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------
Confidence 34555556655444 343333444555544444678999999999999865432 46899999943
Q ss_pred CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHH
Q 019479 159 LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE 238 (340)
Q Consensus 159 ~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (340)
.|-.+..+|+...|++++++|+++++.+|... |+..+++|+.|+|||||.|.|.+... ++.+.+
T Consensus 104 -~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~ 167 (219)
T PF05148_consen 104 -PNPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKS--------------RFENVK 167 (219)
T ss_dssp -SSTTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HH
T ss_pred -CCCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHH
Confidence 34457889999999999999999999888754 88999999999999999999987543 244788
Q ss_pred HHHHHHHHCCCcEEEEEEeCCc
Q 019479 239 EYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
.+.+.++..||+.......+..
T Consensus 168 ~F~~~~~~~GF~~~~~d~~n~~ 189 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDESNKH 189 (219)
T ss_dssp HHHHHHHCTTEEEEEEE--STT
T ss_pred HHHHHHHHCCCeEEecccCCCe
Confidence 8999999999999886655543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=120.12 Aligned_cols=105 Identities=22% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC--CCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~ 187 (340)
.+..+||||||+|.++..+++.+|...++|+|+++.+++.+.++. ...|+.++++|+..+ .++++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 467999999999999999999999999999999999999998663 346899999999653 467889999998654
Q ss_pred ccccCCH------HHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDP------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..|.... ..+++++.|+|+|||.+.+.+..
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3332222 47899999999999999987544
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-13 Score=111.68 Aligned_cols=144 Identities=20% Similarity=0.188 Sum_probs=100.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CC-cEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
...+.||+|+|.|+.+..++-.+ ..+|..+|..+..++.|++.... .+ .++.+..++++.....+||+|++-+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999998776653 57899999999999999987654 23 5678888887654567899999999999
Q ss_pred ccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
|+.|.+ ++|++|...|+|+|.+++-+....... ..+-..-....++.+.+.++|++||++++....-.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 999886 899999999999999999765433211 00000001113478999999999999998876653
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-13 Score=103.17 Aligned_cols=102 Identities=32% Similarity=0.405 Sum_probs=82.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.+.. ..+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 6899999999999999998743 356899999997754 67889999999877
Q ss_pred ccccC--------CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWP--------DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~--------d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..... ....+++++.++|||||.++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66431 124789999999999999988753
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=121.01 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=83.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++.... ..+++..|.... ..++||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 45899999999999999999988889999999999999999764332 245677777542 35679999999988864
Q ss_pred C-----CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 192 P-----DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 192 ~-----d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. ....+++++.++|||||.++++...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2 2358899999999999999887543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-12 Score=101.86 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=101.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCC-cEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE-CTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
...+|||+|||.|.+...+++.-=....+|+|.|+.+++.|+..+. .+| |+|.+.|+.+..+..++||+|+-...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3449999999999999999987212459999999999999986532 234 999999998766777889999987766
Q ss_pred cccC---CH-----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWP---DP-----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~---d~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+. |. ...+..+.+.|+|||+++|...+. |.+++.+.++..||+.....+..
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHHHHHhcCCeEEEEeeccc
Confidence 5441 11 246788899999999999987543 78999999999999876665543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=117.68 Aligned_cols=139 Identities=27% Similarity=0.308 Sum_probs=96.4
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc--EEEEcCCCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--TIIEGDAEDL 172 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i--~~~~~d~~~~ 172 (340)
+.+..+.-..+.... .++.+|||+|||+|.+++..++. +..+|+|+|+++.+++.|+++...+++ ++......+
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 334445555555443 37889999999999999998886 456899999999999999987332221 222222222
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
....+||+|+++-...- ....+..+.++|+|||+++++..... ..+++.+.+++ ||+.+
T Consensus 221 -~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 221 -LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp -TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEE
T ss_pred -cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEE
Confidence 23488999998754332 23677788999999999999875432 35677788876 99998
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
+....+
T Consensus 280 ~~~~~~ 285 (295)
T PF06325_consen 280 EEREEG 285 (295)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887764
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=104.55 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~v 182 (340)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+ ..+++.++++|+.+.. ++.++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 578999999999999999998886 45689999999865 1257888999986642 346679999
Q ss_pred EecCccc----c-cC------CHHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIE----Y-WP------DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~----~-~~------d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++....+ + .. +...+++++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 1 11 12578999999999999999864
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=105.32 Aligned_cols=130 Identities=13% Similarity=0.015 Sum_probs=99.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC--
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-- 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-- 175 (340)
++.+||+.|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5689999999999999999998 899999999999999986531 224689999999987632
Q ss_pred -CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 176 -TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
.+.||+|+-..++++++.. .+..+.+.++|+|||.++++....+... -...+ ..+.+++.+++.. +|++
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~----~GPPf--~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS----QTPPY--SVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC----CCCCC--cCCHHHHHHhccC-CceE
Confidence 2579999999999999654 3789999999999999988754322110 01111 2367888888864 3443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-12 Score=94.03 Aligned_cols=98 Identities=33% Similarity=0.424 Sum_probs=83.4
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCC-CCCCccEEEecCcccc-
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEY- 190 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~- 190 (340)
+|+|+|||.|..+..+++ .+..+++++|+++.+++.+++. ....++++...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 4578999999999999988832 334578899999977553 4567999999999998
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=106.22 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
.+...++..+.. .++.+|||+|||+|.++..+++.. .+|+++|.++.+++.++++. ...+++++.+|..+....
T Consensus 65 ~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 65 YMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 334444444443 478899999999999999888773 58999999999999998763 345689999998653323
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++||+|++...++++ .+.+.+.|+|||++++...
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 4789999998776654 3567899999999988643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-12 Score=110.55 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~-~~~~~~fD~v~~~~ 186 (340)
+++.+|||||||+|.++..+++.+|+.+++++|+++++++.|++... .++++++.+|..+. ....++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 36789999999999999999999999999999999999999998743 36789999998542 22345799999753
Q ss_pred cc-cccC---CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SI-EYWP---DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l-~~~~---d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.- ...+ ....+++++.+.|+|||++++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 11 1111 125899999999999999998644
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=126.73 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=121.5
Q ss_pred hHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH
Q 019479 74 KEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152 (340)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~ 152 (340)
.+..+||+..-.+-+.++.|+.+++.+.+. +...+.. -++.+|||+|||+|..++.+++.++..+|+|+|+|+.+++.
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~ 157 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV 157 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 355577777777778889999999888877 4332110 13568999999999999999999888899999999999999
Q ss_pred HHHhCCC-------------------CCcEEEEcCCCCCCCC-CCCccEEEecCccc--------------c--------
Q 019479 153 AKQKEPL-------------------KECTIIEGDAEDLPFP-TDYADRYVSAGSIE--------------Y-------- 190 (340)
Q Consensus 153 a~~~~~~-------------------~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~--------------~-------- 190 (340)
|+++... .+++++++|+.+.... ..+||+|+++--.- +
T Consensus 158 A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~ 237 (1082)
T PLN02672 158 AWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYS 237 (1082)
T ss_pred HHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccc
Confidence 9877321 3689999999653211 23699999863211 0
Q ss_pred ------c------CCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH-HHHHHCCCcEEE
Q 019479 191 ------W------PDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI-EWFQKAGFKDVK 253 (340)
Q Consensus 191 ------~------~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGF~~v~ 253 (340)
+ .|- .+++.++.++|+|||++++.... ...+.+. +++++.||+.++
T Consensus 238 ~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~-----------------~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 238 LSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG-----------------RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred cCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-----------------cHHHHHHHHHHHHCCCCeeE
Confidence 0 011 36778888899999998876422 1245667 599999999988
Q ss_pred EEEeC
Q 019479 254 LKRIG 258 (340)
Q Consensus 254 ~~~~~ 258 (340)
+....
T Consensus 301 ~~~~~ 305 (1082)
T PLN02672 301 LWQTK 305 (1082)
T ss_pred Eeeeh
Confidence 77654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=104.62 Aligned_cols=133 Identities=22% Similarity=0.267 Sum_probs=107.9
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCCCCC
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~~~~ 178 (340)
+.....+ .++.+|||.|.|+|.++..+++.. |.++|+.+|+.++..+.|++++. . +++++..+|+.+.-..+ .
T Consensus 86 I~~~~gi-~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~ 163 (256)
T COG2519 86 IVARLGI-SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-D 163 (256)
T ss_pred HHHHcCC-CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-c
Confidence 3344444 489999999999999999999865 44899999999999999998832 2 44889999997755444 7
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
||+|++ .+++|.+++.++.++|||||.+++..+...+ .+...+.|++.||..++..++-
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhheee
Confidence 999998 7999999999999999999999988775432 3455567888899998887775
Q ss_pred C
Q 019479 259 P 259 (340)
Q Consensus 259 ~ 259 (340)
.
T Consensus 223 ~ 223 (256)
T COG2519 223 V 223 (256)
T ss_pred e
Confidence 3
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=109.57 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCC-CCCCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAED-LPFPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~-~~~~~~~fD 180 (340)
..+.+||+||||+|..+..+++..+..+|+++|+++++++.|++. ...++++++.+|..+ +....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 357899999999999999988874457999999999999999962 235789999999965 333456799
Q ss_pred EEEecCcccccCC------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 181 RYVSAGSIEYWPD------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 181 ~v~~~~~l~~~~d------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+|++... ..... ...+++.+++.|+|||.+++....... .... ...+.+.++++||.+...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~~~~----------~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--APLV----------YWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--hHHH----------HHHHHHHHHHhCCceEEE
Confidence 9998632 11110 136899999999999999887432210 0000 123668899999998877
Q ss_pred EEeCCcc
Q 019479 255 KRIGPKW 261 (340)
Q Consensus 255 ~~~~~~~ 261 (340)
....+.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 7776554
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=102.42 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~ 176 (340)
+...+++.+.. +++.+|||||||+|..+..+++. ..+|+.+|..++..+.|+++ ....|+.++++|-..-....
T Consensus 60 ~vA~m~~~L~~-~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLEL-KPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCC-CCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 45555555555 58899999999999999999998 45999999999999999987 45678999999997644456
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+||.|+.......++ +.+.+.||+||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 8899999988888776 557889999999988643
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=105.27 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=103.9
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCC--
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFP-- 175 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~-- 175 (340)
.++..+.+ .+|.+|||.|+|+|.++..+++.. |.++|+.+|..++..+.|++++ . ..++++.+.|+.+..+.
T Consensus 31 ~I~~~l~i-~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLDI-RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcCC-CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 34444554 589999999999999999999875 6689999999999999999872 2 35799999999653332
Q ss_pred -CCCccEEEecCcccccCCHHHHHHHHHHhc-ccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 176 -TDYADRYVSAGSIEYWPDPQRGIKEAYRVL-KIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+..+|.|++ ++++|..++..+.++| |+||++.+..|...+ .....+.|++.||..++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIE 168 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEE
T ss_pred ccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeE
Confidence 357999998 8999999999999999 999999888765432 34556678889999999
Q ss_pred EEEeCCc
Q 019479 254 LKRIGPK 260 (340)
Q Consensus 254 ~~~~~~~ 260 (340)
+.++..+
T Consensus 169 ~~Evl~R 175 (247)
T PF08704_consen 169 TVEVLLR 175 (247)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 8887543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-11 Score=101.66 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=97.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
...++||||+|.|..+..++..+ .+|+++|.|+.|....+++ +.+++ |..++...+.+||+|.|.++|....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 56789999999999999999885 5799999999998888764 33333 3333443456899999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEc--cCCC--------chhHhhHhh---hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIG--PVYP--------TFWLSRFFA---DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~--~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+|...|+.+++.|+|+|++++.- |..+ .......+. ..+. .....+.+.|+.+||+++......
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E--~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFE--EQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHH--HHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999998752 1111 000000000 0010 013345588999999998887764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=107.17 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=86.0
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEEEcCCCCCCCCCCCccE
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~~~d~~~~~~~~~~fD~ 181 (340)
++.++.. .+.+|||+|||.|..+..+++..|..+++.+|.+..+++.++++...+ +..+...|..+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 4444433 344999999999999999999999999999999999999999885433 33456666654 3233 8999
Q ss_pred EEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+++--+|.-.+. ++++++..+.|++||.|.|+-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999988854333 2789999999999999988865
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=109.43 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--------CCCCcEEEEcCCCCC-CCCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECTIIEGDAEDL-PFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--------~~~~i~~~~~d~~~~-~~~~~~fD~v~ 183 (340)
.+++||+||||+|..+..++++.+..+|+++|+++.+++.|++.. ..++++++.+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 578999999999999999988744579999999999999999864 256799999998652 33467899999
Q ss_pred ecCcccccCCH----HHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+...-...+.. ..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86433322221 478899999999999998764
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=99.81 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=106.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcE-EEEcCCCCC--CC------CCCCccE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECT-IIEGDAEDL--PF------PTDYADR 181 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~-~~~~d~~~~--~~------~~~~fD~ 181 (340)
+.+|||||||||..+..+++.+|..+..-.|.++......+.. ...+|+. .+..|+... +. ..++||+
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 3369999999999999999999999999999988886555543 2234432 355666443 22 2458999
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhH----hhHhhh------HhhcCCCHHHHHHHHHHCCC
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWL----SRFFAD------VWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~l~~aGF 249 (340)
|++.+++|-.+-. +.+++.+.++|++||.|++-.+...+... ...|.. .....++.+++.++.+++|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999999866433 47899999999999999998765442211 111111 12236789999999999999
Q ss_pred cEEEEEEeCC
Q 019479 250 KDVKLKRIGP 259 (340)
Q Consensus 250 ~~v~~~~~~~ 259 (340)
+.++..++..
T Consensus 186 ~l~~~~~MPA 195 (204)
T PF06080_consen 186 ELEEDIDMPA 195 (204)
T ss_pred ccCcccccCC
Confidence 9888877653
|
The function of this family is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-11 Score=101.95 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---------------CCCcEEEEcCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---------------~~~i~~~~~d~~~~~~~~ 176 (340)
.++.+||+.|||.|..+..++++ |.+|+|+|+|+.+++.+.+... ..+|++.++|+.+++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 36779999999999999999998 8999999999999999854311 235789999998876333
Q ss_pred -CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 177 -DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 177 -~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++||+|+=..+++-++.. .+..+.+.++|+|||.++++....+... .-...+ ..+.+++.+++. .+|++..
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---~~GPPf--~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---MEGPPF--SVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---SSSSS------HHHHHHHHT-TTEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---CCCcCC--CCCHHHHHHHhc-CCcEEEE
Confidence 479999999898888533 4789999999999999544432221110 001111 236889999998 8999887
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
....
T Consensus 188 l~~~ 191 (218)
T PF05724_consen 188 LEEE 191 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7764
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=103.90 Aligned_cols=100 Identities=32% Similarity=0.369 Sum_probs=75.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--C--CcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..++|+|||+|..++.++.. -.+|+|+|+|+.|++.|++.... . ..+....+..++--.+++.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999888888887 46899999999999999976321 1 122233333333333789999999999998
Q ss_pred cCCHHHHHHHHHHhcccCc-EEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGG-KACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG-~l~i~~~~ 217 (340)
+ |..++++++.|+||+.| .+.+....
T Consensus 113 F-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 8 78899999999998766 66555443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=101.38 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=113.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCC---CCCc-EEEEcCCCCC---CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP---LKEC-TIIEGDAEDL---PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~---~~~i-~~~~~d~~~~---~~~~~~fD~v 182 (340)
..+.+||||.||.|.........+|. .++...|.|+..++..++... ..++ +|.++|+.+. ...+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999886 789999999999999987633 3444 9999999763 2234557999
Q ss_pred EecCcccccCCHH---HHHHHHHHhcccCcEEEEEc-cCCCchh-HhhHhh------hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 183 VSAGSIEYWPDPQ---RGIKEAYRVLKIGGKACVIG-PVYPTFW-LSRFFA------DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 183 ~~~~~l~~~~d~~---~~l~~~~~~LkpgG~l~i~~-~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+.+..++.++|.+ ..++.+.+++.|||.|+.+. +.++... ..+.+. ...+..++..++.++++.|||+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999875 57899999999999998886 4444332 222221 23345789999999999999997
Q ss_pred EEEEE
Q 019479 252 VKLKR 256 (340)
Q Consensus 252 v~~~~ 256 (340)
++...
T Consensus 294 ~~q~I 298 (311)
T PF12147_consen 294 IDQRI 298 (311)
T ss_pred hhhee
Confidence 65543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-11 Score=108.32 Aligned_cols=108 Identities=22% Similarity=0.239 Sum_probs=83.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~ 175 (340)
+...++..+.. +++.+|||||||+|.++..+++..+. ..|+++|+++.+++.|+++ ....++.++++|..+.+..
T Consensus 68 l~a~ll~~L~i-~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCC-CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 44444554444 46789999999999999999998643 5799999999999999875 3346789999998665444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.++||+|++...+.++ ...+.+.|+|||++++.
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 5679999998665543 34577899999998875
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=103.96 Aligned_cols=111 Identities=21% Similarity=0.323 Sum_probs=83.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~ 173 (340)
..+...+++.+.. +++.+|||||||+|..+..++.... ...|+++|..+...+.|++++ ...|+.++++|...-.
T Consensus 58 P~~~a~~l~~L~l-~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDL-KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhc-CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3455666666664 5899999999999999999998863 357999999999999999873 3568999999986543
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+||.|++......++ ..+.+.||+||+|++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 3556899999998876554 45778899999998853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-11 Score=102.39 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=101.5
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCcc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD 180 (340)
++.++..+...+....|.|+|||.+..+. .. ...|+.+|+-+ .|-+++.+|+.+.|+++++.|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a------------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA------------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec------------CCCceeeccccCCcCccCccc
Confidence 34444444444567899999999998876 22 35799999832 456788999999999999999
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+++++.+|.- .|...+++++.|+||+||.++|.+... +|.+...+...++..||........+..
T Consensus 231 vaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 231 VAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred EEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 9999888764 588999999999999999999987543 2557778999999999998877666544
Q ss_pred c
Q 019479 261 W 261 (340)
Q Consensus 261 ~ 261 (340)
+
T Consensus 296 F 296 (325)
T KOG3045|consen 296 F 296 (325)
T ss_pred E
Confidence 4
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=96.75 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=96.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------C------------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------K------------------------ 160 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------~------------------------ 160 (340)
.+..+|||||.+|.++..+++.+....+.|+|+++..++.|++.... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 67899999999999999999999888999999999999999986421 0
Q ss_pred ------CcEEEEcCCC-----CCCCCCCCccEEEecCccccc----CC--HHHHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 161 ------ECTIIEGDAE-----DLPFPTDYADRYVSAGSIEYW----PD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 161 ------~i~~~~~d~~-----~~~~~~~~fD~v~~~~~l~~~----~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
|+.|...+.. -+++....||+|+|..+-.++ -| ...+++++.++|.|||+|++.-.....+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 1112111110 012345679999986554433 22 248999999999999999876433222221
Q ss_pred -hhHhhhH----hhcCCCHHHHHHHHHHC--CCcEEEEEE
Q 019479 224 -SRFFADV----WMLFPKEEEYIEWFQKA--GFKDVKLKR 256 (340)
Q Consensus 224 -~~~~~~~----~~~~~~~~~~~~~l~~a--GF~~v~~~~ 256 (340)
.+..... ...+..++.+.+++.+. ||+-++-..
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 1222222 22255789999999887 666544333
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=110.47 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC----CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP----FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~----~~~~~fD~v~ 183 (340)
.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++ .+..+++++++|+.+++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4688999999999999999998754 46999999999999999876 33457899999997764 3456899999
Q ss_pred ec------CcccccCC----------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH
Q 019479 184 SA------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI 241 (340)
Q Consensus 184 ~~------~~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (340)
+. .++.+-++ ..++|+++.+.|||||+|+..+..... ..+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~-------------~Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP-------------AENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhHHHHHH
Confidence 73 33443333 247899999999999999877644321 11345566
Q ss_pred HHHHHC-CCcEE
Q 019479 242 EWFQKA-GFKDV 252 (340)
Q Consensus 242 ~~l~~a-GF~~v 252 (340)
..+++. +|+.+
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 677665 57643
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=111.63 Aligned_cols=126 Identities=20% Similarity=0.146 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCCC-CCCCCCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAEDL-PFPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~~-~~~~~~f 179 (340)
+++++|||||||+|..+..++++ +. .+++++|+++++++.++++ ..+++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 36789999999999999999875 55 7999999999999999983 1236799999998652 2335689
Q ss_pred cEEEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 180 DRYVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 180 D~v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
|+|++...-...+.. .++++.+.+.|||||.+++...... .. .. ...++.+.++++||.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~-~~-~~----------~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY-FA-PK----------AFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc-cc-hH----------HHHHHHHHHHHcCCE
Confidence 999997543322221 3689999999999999988753211 10 11 124677899999993
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=108.51 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++... -+++++++|+.+++ +..++||.|++.-.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 478899999999999999999987668999999999999999877432 23678999997653 33567999995332
Q ss_pred c------cc------cCC----------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 188 I------EY------WPD----------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 188 l------~~------~~d----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
. .+ ... ...+++++.+.|||||++++.+..... ..+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~-------------~Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP-------------EENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhCHHHHHHHHH
Confidence 1 11 111 126899999999999999987653321 124556666666
Q ss_pred HC-CCcEEE
Q 019479 246 KA-GFKDVK 253 (340)
Q Consensus 246 ~a-GF~~v~ 253 (340)
+. +|+.+.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 566543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=99.13 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=78.7
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC-CC--CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED-LP--FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~-~~--~~~~~fD~v~~~~~l 188 (340)
..+||||||.|.++..+|..+|+..++|+|++...+..+.++ ....|+.++++|+.. +. ++++++|.|+.++.=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 389999999999999999999999999999999999888765 356899999999976 22 456889999984332
Q ss_pred cccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 189 EYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 189 ~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-+.... ..+++.+.++|+|||.|.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 221111 17999999999999999887643
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=107.70 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~-- 185 (340)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++. +..+++++++|+..++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 4678999999999999998888653 469999999999999998763 3356889999997764 45679999962
Q ss_pred -Cccccc---C------C----------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 -GSIEYW---P------D----------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 -~~l~~~---~------d----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.....+ + + ...+|.++.+.|||||+++..+..... ..+.+.+..+++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~-------------~Ene~~v~~~l~ 394 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP-------------EENELQIEAFLQ 394 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh-------------hhHHHHHHHHHH
Confidence 111111 1 1 126899999999999999998755431 113445556666
Q ss_pred HC-CCcEEE
Q 019479 246 KA-GFKDVK 253 (340)
Q Consensus 246 ~a-GF~~v~ 253 (340)
+. +|..+.
T Consensus 395 ~~~~~~~~~ 403 (445)
T PRK14904 395 RHPEFSAEP 403 (445)
T ss_pred hCCCCEEec
Confidence 55 465433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=107.84 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC----cEEEEcCCCCCCC--CCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIEGDAEDLPF--PTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----i~~~~~d~~~~~~--~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++....+ +.+..+|....+. ..++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46889999999999999999998776899999999999999987743222 3335666654432 45679999963
Q ss_pred ------CcccccCC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 186 ------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 186 ------~~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+++++.++ ...+|+++.++|||||+|+..+...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34444443 2478999999999999999886554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=93.68 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+|||+|||+|.++..++++ +.+++++|+++.+++.++++.. ..+++++.+|+.++++++.+||.|+++--++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN- 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-
Confidence 36779999999999999999998 6799999999999999998854 3579999999998887776799999876554
Q ss_pred cCCHHHHHHHHHHh--cccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRV--LKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~--LkpgG~l~i~~ 215 (340)
+ ....+.++.+. +.++|.+++..
T Consensus 89 ~--~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 I--STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred c--HHHHHHHHHhcCCCcceEEEEEEH
Confidence 3 23444544443 34677776663
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.5e-11 Score=98.80 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC--cEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+....++|||||-|.....+.... -.+++.+|.|-.|++.++.... +. +....+|-+.+++.++++|+|+++..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345789999999999999998872 4689999999999999986432 33 4567889999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh------------HhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD------------VWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++.|....+.+|...|||+|.++-.-...+.....+.... ....|....++-.+|.+|||.-+.+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 9999999999999999999998765433332222111111 1112445688999999999996554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-10 Score=105.17 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++. +..+++++++|...++ +..++||.|++.-
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 478899999999999999999876 3579999999999999998773 3346889999987765 4466899999732
Q ss_pred ---ccccc---CC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 ---SIEYW---PD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ---~l~~~---~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+..+ ++ ..++|.++.+.|||||.|+..+...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 12221 11 1367999999999999998876553
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-10 Score=105.80 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++. ...+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 467899999999999999999886 4679999999999999998763 3346899999997653 23 679999975
Q ss_pred Ccc------cccCC----------------HHHHHHHHHHhcccCcEEEEEccC
Q 019479 186 GSI------EYWPD----------------PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 186 ~~l------~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
--. .+-++ ...+++++.++|||||+++..+..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 321 11111 125799999999999999876543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=101.81 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~-~-~~~~~fD~v 182 (340)
+.+++||+||||.|..+..+++..+..+|+.+|+++.+++.+++.. ..++++++.+|.... . .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3678999999999999999988733468999999999999999863 246899999997442 1 235679999
Q ss_pred EecCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++...-.+.+. ...+++.+.+.|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98543322221 1368999999999999997664
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=95.30 Aligned_cols=135 Identities=24% Similarity=0.269 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh-----CCCCCcEEEEcCCCCC--CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK-----EPLKECTIIEGDAEDL--PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~-----~~~~~i~~~~~d~~~~--~~~~~~fD~v~ 183 (340)
+++.+|||.+.|-|..++..+++ |+ +|+-++.++..++.|+-+ ....+++++.+|..+. .+.|.+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 47999999999999999999998 65 999999999999999855 1224689999999663 47899999998
Q ss_pred ecCcccccC---CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 184 SAGSIEYWP---DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 184 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
-.--=.... -..++.++++|+|||||+++--....... +....-+..+.+.|+++||++++....
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHHHhcCceeeeeehh
Confidence 521110000 11378999999999999997654332211 111223577889999999998776543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-10 Score=99.65 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+||+||||+|..+..+++..+..+++++|+++.+++.+++.. ..++++++.+|..+ +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999888755678999999999999999863 23568888888744 2223568999998
Q ss_pred cCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
......-+. ..++++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3478899999999999998873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=98.30 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecC-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAG- 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~- 186 (340)
+++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.++++. ...++.++..|...++...+.||.|++.-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4788999999999999999988764 368999999999999998763 33568889999876654456799999732
Q ss_pred -----cccccCC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 -----SIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 -----~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++.+-++ ...+|+++.+.|||||+|+..+...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1111111 1258999999999999998776543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=94.12 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+...++ +++||+|+++--++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 36799999999999999998864 3469999999999999999765 458899999976554 56899999985555
Q ss_pred ccC--C----------HHHHHHHHHHhcccCcEEEEEccCCC-chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 190 YWP--D----------PQRGIKEAYRVLKIGGKACVIGPVYP-TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 190 ~~~--d----------~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
... + ...+++++.+++++|+. ++=....+ .+...+++. +..-.+...+.++.++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFR--QDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCcccee--eccCcccHHHHHHHHhcCeee
Confidence 221 1 23578888886666664 22111110 110111110 011235677888999999774
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=102.44 Aligned_cols=145 Identities=18% Similarity=0.153 Sum_probs=97.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---------CC----CcEEEEcCCCCC----CCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECTIIEGDAEDL----PFP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---------~~----~i~~~~~d~~~~----~~~ 175 (340)
++.+|||+|||.|..+.-.... .-..++|+|++...++.|++|.. .. ...|+.+|.... .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7889999999999988877776 45799999999999999998851 11 245678887542 133
Q ss_pred C--CCccEEEecCccccc-CCH---HHHHHHHHHhcccCcEEEEEccCCCchh--Hh----------------------h
Q 019479 176 T--DYADRYVSAGSIEYW-PDP---QRGIKEAYRVLKIGGKACVIGPVYPTFW--LS----------------------R 225 (340)
Q Consensus 176 ~--~~fD~v~~~~~l~~~-~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~----------------------~ 225 (340)
+ .+||+|-|..++|+. .+. ..+|+++.+.|+|||+++.+.+...... +. .
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 489999999999986 333 3689999999999999998754321110 00 0
Q ss_pred ----Hhh------------hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 226 ----FFA------------DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 226 ----~~~------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+. .........+.+.+++++.||+.+....+.
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ 269 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFH 269 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChH
Confidence 000 000012357889999999999999877664
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=94.39 Aligned_cols=146 Identities=20% Similarity=0.163 Sum_probs=99.4
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCC--CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLF--DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
||.-++..|-+..-..-..++.|+..++..++.+++..... -.+..|||+|||+|..+..++...|.++|+++|.|+.
T Consensus 104 QYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~ 183 (328)
T KOG2904|consen 104 QYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA 183 (328)
T ss_pred hheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH
Confidence 33333333333333334557777888887777666543211 1456899999999999999999999999999999999
Q ss_pred HHHHHHHhCC----CCCcEEEEcCCCC-----CCCCCCCccEEEecCcccccCCHH------------------------
Q 019479 149 QLAKAKQKEP----LKECTIIEGDAED-----LPFPTDYADRYVSAGSIEYWPDPQ------------------------ 195 (340)
Q Consensus 149 ~~~~a~~~~~----~~~i~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~d~~------------------------ 195 (340)
++..|.++.. ..++.+++-+.+. .+...+++|+++++--.-.-+|.+
T Consensus 184 Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 184 AIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred HHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 9999987632 3456666444322 335678899999975543332221
Q ss_pred --HHHHHHHHhcccCcEEEEEcc
Q 019479 196 --RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 196 --~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++.-+.|+|+|||.+.+...
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEec
Confidence 345566789999999887644
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=102.52 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=96.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC--
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL-- 172 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~-- 172 (340)
+.+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++. ...+++++++|+.+.
T Consensus 283 e~l~~~vl~~l~~-~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDP-QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 4455555555543 36789999999999999999988 479999999999999999773 335799999998642
Q ss_pred --CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 173 --PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 173 --~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
++.+++||+|++.---.- ....++.+.+ ++|++.+++..... .. ..++ ..|.+.||+
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~--tl--------------aRDl-~~L~~~gY~ 418 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPA--TL--------------ARDA-GVLVEAGYR 418 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChH--Hh--------------hccH-HHHhhCCcE
Confidence 234567999998543322 2345555555 68888888875211 00 1122 245578999
Q ss_pred EEEEEEeC
Q 019479 251 DVKLKRIG 258 (340)
Q Consensus 251 ~v~~~~~~ 258 (340)
+.++..+.
T Consensus 419 l~~i~~~D 426 (443)
T PRK13168 419 LKRAGMLD 426 (443)
T ss_pred EEEEEEec
Confidence 99888875
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-10 Score=101.21 Aligned_cols=124 Identities=24% Similarity=0.291 Sum_probs=91.5
Q ss_pred hhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCC
Q 019479 86 VYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKE 161 (340)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~ 161 (340)
...+++...-.+..++..++..-.++ +++.|||+|||+|.++...++. +..+|+++|.|..+ +.|.+... ...
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~i 110 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDV 110 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccce
Confidence 34455555555566666666665554 7999999999999999999888 46799999996655 77776532 234
Q ss_pred cEEEEcCCCCCCCCCCCccEEEecCcccccC---CHHHHHHHHHHhcccCcEEE
Q 019479 162 CTIIEGDAEDLPFPTDYADRYVSAGSIEYWP---DPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 162 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~ 212 (340)
++++.+.++++.+|.+++|+|++-++-+++- -.+.+|-.=-+.|+|||.++
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 8899999998777778899999977666542 22345555568899999974
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=110.27 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=93.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C--CCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~--~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
++++|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. . .+++++++|+.++- ...++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999986 34579999999999999998742 2 36899999986521 1246799999853
Q ss_pred cc-----------cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 187 SI-----------EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 187 ~l-----------~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
-. ....+...++..+.++|+|||.+++...... .+ .-.+.+.++|+....+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------------~~--~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------------FK--MDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------CC--hhHHHHHhCCCeEEEEe
Confidence 21 1112334678889999999999977643221 01 12678888999987776
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=92.72 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC-C-----CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL-P-----FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~-~-----~~~~~fD 180 (340)
.++++|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++. ..+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3678999999999999999888764 5799999999999999998732 25689999999652 2 1246899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|++..- -+.....+..+.+.|+|||.+++-+.
T Consensus 147 ~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 147 FAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998432 12335788999999999999887653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=87.87 Aligned_cols=122 Identities=21% Similarity=0.277 Sum_probs=95.1
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~l~~ 190 (340)
..++|||||=+...... ..+-.+|+.||+++ ..-.+.+.|+.+.|+ +.++||+|.++.+|.+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC------------CCCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 46999999976555433 23456899999966 233467889988765 3678999999999999
Q ss_pred cCCHH---HHHHHHHHhcccCcE-----EEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 191 WPDPQ---RGIKEAYRVLKIGGK-----ACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 191 ~~d~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
++++. +.++++.+.|+|+|. |+++-|..-. ...++.+.+.|.++++..||..++.+....
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 99996 789999999999999 8888654311 122366889999999999999999877654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=93.78 Aligned_cols=103 Identities=23% Similarity=0.173 Sum_probs=81.7
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC---CCCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL---PFPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~---~~~~~~fD~v~~~~~l 188 (340)
..+||||||.|.+...+|++.|...++|||+....+..|.++. ..+|+.++++|+..+ -+++++.|-|++++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999998888887662 334899999999653 1345589999985432
Q ss_pred cccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 189 EYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 189 ~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-|.... ..+++.+.++|||||.|.+.+..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 222111 17899999999999999988643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=92.21 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=110.4
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTII 165 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~ 165 (340)
..+.+..+...+...+.+.+.. .+|..|||-=||||.+++...-. |++++|.|++..|++-|+.++..- ...+.
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v-~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~ 250 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARV-KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVL 250 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhcc-ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEE
Confidence 3445555666666666666665 58999999999999999998776 899999999999999999885543 34344
Q ss_pred Ec-CCCCCCCCCCCccEEEecCccccc-----CC----HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCC
Q 019479 166 EG-DAEDLPFPTDYADRYVSAGSIEYW-----PD----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFP 235 (340)
Q Consensus 166 ~~-d~~~~~~~~~~fD~v~~~~~l~~~-----~d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 235 (340)
.. |+..+|++++++|.|++---..-. .. ..++++.+.++||+||++++..+..
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~----------------- 313 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD----------------- 313 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-----------------
Confidence 44 999999988899999984333221 11 1378999999999999999886521
Q ss_pred CHHHHHHHHHHCCCcEEEEEEe
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
..+.+++.||+++.....
T Consensus 314 ----~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 314 ----PRHELEELGFKVLGRFTM 331 (347)
T ss_pred ----chhhHhhcCceEEEEEEE
Confidence 234778899999877665
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=91.03 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccchH----HHHHHHhC---C--CceEEEEeCCHHHHHHHHHhC----------------------C---
Q 019479 113 RNMRVVDVGGGTGFT----TLGIVKHV---D--AKNVTILDQSPHQLAKAKQKE----------------------P--- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~----~~~l~~~~---~--~~~v~g~D~s~~~~~~a~~~~----------------------~--- 158 (340)
+..+|+..||++|.- ++.+.+.. . ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999953 33344411 1 369999999999999998631 0
Q ss_pred ------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEc
Q 019479 159 ------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 159 ------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+|+|...|+.+.+...+.||+|+|.+++.++++. .++++.+++.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 045899999998744456789999999999999766 489999999999999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-09 Score=98.63 Aligned_cols=104 Identities=19% Similarity=0.077 Sum_probs=77.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C--CCcEEEEcCCCCCC----CCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECTIIEGDAEDLP----FPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~--~~i~~~~~d~~~~~----~~~~~fD~v~ 183 (340)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. . .+++++++|+.+.. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876654 34599999999999999998732 2 36889999996631 1245799999
Q ss_pred ecCccccc---------CCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYW---------PDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~---------~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.--...- .+...+++.+.++|+|||.++.....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87443211 12234556778999999999876543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-09 Score=88.43 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=81.4
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC-
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL- 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~- 172 (340)
...+++.++..+.....+.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++. ...+++++++|+.+.
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 444545455444322357899999999999998765553 479999999999999998763 335789999998652
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHh--cccCcEEEEEcc
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRV--LKIGGKACVIGP 216 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--LkpgG~l~i~~~ 216 (340)
+....+||+|+++--+.. .-...+++.+... |+|++.+++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 223456999999766432 1223455555543 788888887754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=94.37 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCEEEEEcCccchH----HHHHHHhCC----CceEEEEeCCHHHHHHHHHhC-------------------C----C--
Q 019479 113 RNMRVVDVGGGTGFT----TLGIVKHVD----AKNVTILDQSPHQLAKAKQKE-------------------P----L-- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~----~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~-------------------~----~-- 159 (340)
...+|+..||+||.- ++.+.+..+ ..+|+|+|+|+.+++.|++-. . .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999963 333444322 368999999999999998641 0 0
Q ss_pred ---------CCcEEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEc
Q 019479 160 ---------KECTIIEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..|+|...|+.+.+++ .+.||+|+|.+++.|+++. .++++++.+.|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 2478888999764433 5789999999999999654 589999999999999887653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=93.20 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=85.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC-CCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF-PTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++. ...+++|+++|+.++.. ..++||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 689999999999999998763 33579999999976432 23569999986331
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. .....+.+....++|++.+++...... -..++..+ .||+..++..+.
T Consensus 251 ~---G~~~~~~~~l~~~~~~~ivyvsc~p~t----------------~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R---GIGKELCDYLSQMAPRFILYSSCNAQT----------------MAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C---CccHHHHHHHHHcCCCeEEEEECCccc----------------chhHHhhc---cCcEEEEEEEec
Confidence 1 111223333444678777776643211 12344333 599988887764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-09 Score=92.57 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----C----CcEEEEcCCCC------CCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECTIIEGDAED------LPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~----~i~~~~~d~~~------~~~~~ 176 (340)
+++..++|+|||.|..++..-+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 47889999999999998887665 347899999999999999987421 1 25778888743 34456
Q ss_pred CCccEEEecCccccc-CCH---HHHHHHHHHhcccCcEEEEEccCC
Q 019479 177 DYADRYVSAGSIEYW-PDP---QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~-~d~---~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+||+|-|-+++|+. .+. +.+|+++.+.|||||+++-+.|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999999999864 333 478999999999999998876543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-08 Score=96.07 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=92.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL---- 172 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~---- 172 (340)
+...+...+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++ ...|++++.+|+.+.
T Consensus 280 l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 280 LVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 33444444332 35689999999999999999987 568999999999999999873 346899999998652
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+..+++||+|++.-.-.. -...+++.+.+ ++|++.+++... +. |...-.+.|.+.||+..
T Consensus 357 ~~~~~~~D~vi~dPPr~G--~~~~~l~~l~~-l~~~~ivyvsc~--p~---------------tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKG--CAAEVLRTIIE-LKPERIVYVSCN--PA---------------TLARDLEFLCKEGYGIT 416 (431)
T ss_pred HhcCCCCCEEEECcCCCC--CCHHHHHHHHh-cCCCEEEEEcCC--HH---------------HHHHHHHHHHHCCeeEE
Confidence 233457999997433111 12456666554 789887776532 11 11222345677899987
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
.+..+.
T Consensus 417 ~~~~~D 422 (431)
T TIGR00479 417 WVQPVD 422 (431)
T ss_pred EEEEec
Confidence 777654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=77.92 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+++|+|+|||||.+++..+-. +..+|+++|+++++++.++++.. ..++.|+++|+.+. ...+|.|+++--+.-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 6889999999999999987765 45899999999999999998743 35699999999875 456899998765543
Q ss_pred c---CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 W---PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~---~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
. .|. .++..+.+.- -+++-+.. .-+.+-+.+..+++|+.+......
T Consensus 121 ~~rhaDr-~Fl~~Ale~s---~vVYsiH~-----------------a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHADR-PFLLKALEIS---DVVYSIHK-----------------AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCCH-HHHHHHHHhh---heEEEeec-----------------cccHHHHHHHHHhcCCeEEEEEEE
Confidence 3 222 4555555443 12221111 125677888999999998777554
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=88.47 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=87.2
Q ss_pred HHHHHHhccccCCC-C-CCCEEEEEcCccch----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhC---------
Q 019479 98 EDMRDEALEPADLF-D-RNMRVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKE--------- 157 (340)
Q Consensus 98 ~~~~~~~l~~~~~~-~-~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~--------- 157 (340)
+.+...+++.+... . ..-+|+-.||+||. .++.+.+..+ ..+|+|+|+|..+++.|++-.
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 44455555432211 1 36799999999995 4555556554 479999999999999998521
Q ss_pred -------------CC----------CCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEE
Q 019479 158 -------------PL----------KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 158 -------------~~----------~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~ 212 (340)
.. ..|.|...|+...+...+.||+|+|.+|+.+++.+ .++++.++..|+|||.|+
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence 00 24788888886654355669999999999999766 489999999999999998
Q ss_pred EEc
Q 019479 213 VIG 215 (340)
Q Consensus 213 i~~ 215 (340)
+-.
T Consensus 239 lG~ 241 (268)
T COG1352 239 LGH 241 (268)
T ss_pred Ecc
Confidence 853
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-09 Score=87.13 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCC----CCCCCccE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLP----FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~----~~~~~fD~ 181 (340)
.++.+|||+|||+|..++.++...+..+|+..|..+ .++..+.+.. ..++.+...|..+.. ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 478999999999999999999886678999999988 8887776622 355777777774411 23467999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++..+++.-.....+++.+.++|+++|.+++.....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999987777899999999999999977765543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-08 Score=89.22 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=94.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEE-cCCCCCC----CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIE-GDAEDLP----FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~-~d~~~~~----~~~~~fD~v 182 (340)
.+.+|||||||+|.....++.+.++.+++|+|+++.+++.|+++... .++++.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46899999999998887777777789999999999999999987432 2466643 3332211 245689999
Q ss_pred EecCcccccCCHH-----HHHHHH----------------HHhcccCcEEEEEccCCCchhHh----hHhhhHhhcCCCH
Q 019479 183 VSAGSIEYWPDPQ-----RGIKEA----------------YRVLKIGGKACVIGPVYPTFWLS----RFFADVWMLFPKE 237 (340)
Q Consensus 183 ~~~~~l~~~~d~~-----~~l~~~----------------~~~LkpgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~ 237 (340)
+|+--++.-.+.. .-.+.+ .+++.+||.+.++.......... .++..+.....+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 9997776543321 122222 23455788776665443322100 0111111123478
Q ss_pred HHHHHHHHHCCCcEEEEEEeC
Q 019479 238 EEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 238 ~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+.+.+.|++.|...+.+.++.
T Consensus 274 ~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred HHHHHHHHHcCCceEEEEEEe
Confidence 999999999999888877763
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=84.16 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=101.2
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHhC
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~ 157 (340)
|+....+....+.+...++..+.. +++..|||--||+|.+.++.+....... ++|.|+++.+++.+++++
T Consensus 3 yR~~~~~a~L~~~lA~~ll~la~~-~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 3 YRPFFGPAPLRPTLAAALLNLAGW-RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TTTSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHhCC-CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 444455666777777777777765 4788999999999999998877755555 899999999999999873
Q ss_pred C----CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--------HHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 158 P----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 158 ~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
. ...+.+.+.|+.++++.++++|+|+++--...-... ..+++++.++|++ ..+++....
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-------- 152 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-------- 152 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC--------
T ss_pred HhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC--------
Confidence 2 234789999999988778899999997655532111 1567888889998 333333221
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+.+.+...+++..+....+
T Consensus 153 ------------~~~~~~~~~~~~~~~~~~~~~ 173 (179)
T PF01170_consen 153 ------------RELEKALGLKGWRKRKLYNGH 173 (179)
T ss_dssp ------------CCHHHHHTSTTSEEEEEEETT
T ss_pred ------------HHHHHHhcchhhceEEEEEec
Confidence 234556666777776665543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=88.66 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=79.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~ 177 (340)
..+++....+ .++.|||+|||+|.++...+.. +..+|++++. .+|.+.|++... .++|.++.+.+++..++ +
T Consensus 167 ~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-E 242 (517)
T KOG1500|consen 167 RAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-E 242 (517)
T ss_pred HHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-h
Confidence 3444444333 7899999999999999988877 4579999999 678888887643 35688999999988765 4
Q ss_pred CccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEE
Q 019479 178 YADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i 213 (340)
+.|++|+--+-..+-+.. +..-.+++.|||.|.++=
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 589999754443333332 344566799999999864
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=86.89 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEE-cCCCC-CC-CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIE-GDAED-LP-FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~-~d~~~-~~-~~~~~fD~v~ 183 (340)
.++++|||||++.|..++.|+...| ..+++.+|.++++.+.|++++. .++++.+. +|..+ +. ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4789999999999999999999998 6899999999999999998743 23477777 47743 22 3568999999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.-.. -.+...++..+.+.|+|||.+++-+...
T Consensus 138 IDad---K~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 138 IDAD---KADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred EeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 7431 1233589999999999999998765433
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=91.95 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=67.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
+...+++.+.. .++.+|||||||+|.++..++++. .+|+|+|+++.+++.++++...++++++++|+.++++++-.+
T Consensus 30 i~~~i~~~l~~-~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 30 ILDKIVDAAGP-QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHHhcCC-CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 44555555544 467899999999999999999984 499999999999999998765578999999998876543225
Q ss_pred cEEEecCcc
Q 019479 180 DRYVSAGSI 188 (340)
Q Consensus 180 D~v~~~~~l 188 (340)
|.|+++--.
T Consensus 107 ~~vv~NlPY 115 (272)
T PRK00274 107 LKVVANLPY 115 (272)
T ss_pred ceEEEeCCc
Confidence 888876543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=92.18 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+++||.||+|.|..+..+++..+..+++.+|+++.+++.|++... .++++++.+|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5689999999999999999887556789999999999999998742 4689999999865 3334568999998
Q ss_pred cCcccccC-C------HHHHHH-HHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWP-D------PQRGIK-EAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~-d------~~~~l~-~~~~~LkpgG~l~i~~ 215 (340)
... .... . ..++++ .+.+.|+|||.+++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 1110 0 136787 8999999999987763
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=85.69 Aligned_cols=131 Identities=20% Similarity=0.082 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH-HHHhCCCCCc-EEEEcCCCC-----CCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-TIIEGDAED-----LPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~i-~~~~~d~~~-----~~~~~~~fD~v~~ 184 (340)
.++.+|||+|||+|.++..+++. +..+|+++|+++.|+.. .++. +++ .+...|+.. .+..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 37889999999999999999987 45789999999987775 3322 222 233334432 2212235777666
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH-------hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF-------FADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+..+ .+..+.+.|+| |.+++.- .|.+...+. ..+......-.+++...+.+.||++..+..-
T Consensus 150 S~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 150 SLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 4433 57889999999 7665542 222211110 0010111123567777888899998766553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-08 Score=84.65 Aligned_cols=142 Identities=23% Similarity=0.150 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------------------------C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P 158 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------------------------~ 158 (340)
....+||--|||-|+++..++.. |..+.|.|.|--|+-...-.+ .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 35689999999999999999998 899999999998854432110 0
Q ss_pred ----------CCCcEEEEcCCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 159 ----------LKECTIIEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 159 ----------~~~i~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
..++....||+.+.-..+ ++||+|+..+-+....+.-..++.|.++|||||.-+=..|..-+.....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 123566778886654333 6899999987777777777999999999999996655555432221110
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
...-.....+.+++..+.++.||++++.+.
T Consensus 213 -~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 -IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000011245899999999999999987766
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.8e-08 Score=80.24 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=93.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+++|||+|.|.-++.++-.+|..+++.+|.+..-+...+ .....+|++++++.+++ +....+||+|++..+
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--- 124 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV--- 124 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS---
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh---
Confidence 33899999999999999999999999999999996655544 44666899999999988 446778999999854
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+...+++-+...+++||++++.--.... . ..++....++..|.+...+..+.
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~~~~---~-----------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGPDAE---E-----------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--H---H-----------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCCChH---H-----------HHHHHHhHHHHhCCEEeeecccc
Confidence 36678899999999999998877422110 0 12445566777888887777663
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=85.37 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC-----CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP-----FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~-----~~~~~fD 180 (340)
.++++||||||++|..+..+++..| +++|+.+|.+++..+.|++.+ . ..+++++.+|+.+ ++ ...++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999886 589999999999999998763 2 2579999999954 22 1135799
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+|++... -.+....+..+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEccc---ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9998652 2244578889999999999998876543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-08 Score=87.83 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=69.2
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~ 177 (340)
.+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~-~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 16 RVVDRIVEYAED-TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHhcCC-CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--
Confidence 344555555443 36789999999999999999998 5799999999999999998754 46899999999887654
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
.||.|+++-.++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999876654
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=88.38 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC-C----CCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP-F----PTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~-~----~~~~fD 180 (340)
.++++||||||++|..+..++...+ +.+++.+|.+++..+.|++++ + .++++++.+|+.+ ++ + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4678999999999999999998764 578999999999999998773 2 2479999999854 22 1 136799
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|+...- -.+....++.+.+.|+|||.+++-+..
T Consensus 197 ~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 197 FAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 9998532 123357889999999999999876543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=76.51 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..-++|||||+|..+..++... |+..+.++|++|.+++..++.+. ..++..++.|+..- +..++.|+++.+--..-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 6789999999999999988875 55789999999999988776533 34577888898652 23488999887644332
Q ss_pred cCC-----------------H----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 191 WPD-----------------P----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 191 ~~d-----------------~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
-++ - ++++..+-.+|.|.|++++...... .++++.+.++.-||
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKGY 186 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhccc
Confidence 211 1 2456666678889999988754322 46788889999999
Q ss_pred cEEEEEEe
Q 019479 250 KDVKLKRI 257 (340)
Q Consensus 250 ~~v~~~~~ 257 (340)
........
T Consensus 187 ~~~~~~~R 194 (209)
T KOG3191|consen 187 GVRIAMQR 194 (209)
T ss_pred ceeEEEEE
Confidence 87655443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=96.73 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC--CCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~ 187 (340)
.+..+||||||.|.++..+|..+|...++|+|++...+..+.++ ....|+.+++.|+..+ -++++++|.|++++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46789999999999999999999999999999999877776654 3346888888887532 267888999998544
Q ss_pred ccccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
=-|.... ..+++.+.+.|||||.+.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3332211 17899999999999999988643
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-08 Score=86.77 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=81.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC-CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL-PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~-~~~~~~fD~v~~ 184 (340)
..++||-||.|.|..++.+++..+-.+++.+|+++..++.+++.+. +++++++.+|..++ .-..++||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3479999999999999999999777899999999999999998732 47889999998653 223347999998
Q ss_pred cCcccccCCH------HHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDP------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...=. . .+ ..+++.|++.|+++|.++...
T Consensus 156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 54322 1 22 589999999999999998883
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-07 Score=73.49 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=91.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----- 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----- 173 (340)
+.+.+...... ..+.-|||+|.|||.++..++++ .+...+++++.|++......++. +.++++.+|+.++.
T Consensus 36 lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--CCccccccchhhHHHHHhh
Confidence 44444444443 57889999999999999999887 34578999999999999988776 44568899997754
Q ss_pred CCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccC
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..+..||.|++.--+-.++-.. ++|+.+...|.+||.++.....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4567799999988777776443 7899999999999999877654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=83.16 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=66.3
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~ 177 (340)
.+...+++.+.. .++.+|||||||+|.++..+++.. ..|+++|+++.+++.++++.. .++++++.+|+.+.++.
T Consensus 16 ~i~~~i~~~~~~-~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 16 SVIQKIVEAANV-LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHHhcCC-CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 345555555544 367899999999999999999984 579999999999999998754 46899999999887654
Q ss_pred Ccc---EEEecCcc
Q 019479 178 YAD---RYVSAGSI 188 (340)
Q Consensus 178 ~fD---~v~~~~~l 188 (340)
.+| +|+++-.+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 66665443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=88.06 Aligned_cols=122 Identities=10% Similarity=-0.000 Sum_probs=85.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++. ...+++++++|+.+.. ...++||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4679999999999999999975 679999999999999999773 3357899999996532 122459999986442
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+ ...+++.+. .++|++.+++.... .. + ..++..+ .||++.++..+.
T Consensus 311 ~G~--~~~~l~~l~-~~~p~~ivyvsc~p--~T----l----------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGI--GKELCDYLS-QMAPKFILYSSCNA--QT----M----------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCC--cHHHHHHHH-hcCCCeEEEEEeCH--HH----H----------HHHHHHh---cCceEEEEEEec
Confidence 211 134555554 47898888877421 11 0 2333333 699988887765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=82.91 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------CCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-------~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+.+++||-||+|.|..+++++++ + .+|+.+|+++++++.+++. ..+++++++.. +.+ ...++||+||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 46799999999999999999998 4 4999999999999999984 34577777652 221 12467999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-.. ....+++.+.+.|+|||.++....
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 642 446788999999999999988753
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-08 Score=81.21 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCC-------------CCCcEEEEcCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP-------------LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~-------------~~~i~~~~~d~~~~~~~~ 176 (340)
.++.+.||+|+|+|.++..++.... +..++|||.-++.++.+++++. ..++.++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 5899999999999999999887753 3455999999999999987632 245778899998776678
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.+||.|++... .....+++...|++||++++-
T Consensus 161 a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 88999998743 334568888999999999875
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-08 Score=92.99 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEE---eCCHHHHHHHHHhCCCCCcEEEEcC--CCCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECTIIEGD--AEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~i~~~~~d--~~~~~~~~~~fD~v~~~~~ 187 (340)
.-..+||+|||+|.|+..|+++ +..+..+ |..+.+++.|-++. +-.+.+- -..+|++++.||+|+|..+
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcC----cchhhhhhccccccCCccchhhhhcccc
Confidence 3457999999999999999998 5444333 45556777777652 2223233 3568999999999999999
Q ss_pred ccccCCH-HHHHHHHHHhcccCcEEEEEccCCC
Q 019479 188 IEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 188 l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+..+... ...|-++.|+|+|||++++..+...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCccc
Confidence 9877544 4678899999999999998876443
|
; GO: 0008168 methyltransferase activity |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=86.00 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=67.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~ 174 (340)
.+...++..... .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.+.++
T Consensus 23 ~i~~~Iv~~~~~-~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAI-KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCC-CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 344555555544 46789999999999999999987 5789999999999999998742 3679999999977654
Q ss_pred CCCCccEEEecCccc
Q 019479 175 PTDYADRYVSAGSIE 189 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~ 189 (340)
..||.|+++--++
T Consensus 100 --~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 --PYFDVCVANVPYQ 112 (294)
T ss_pred --cccCEEEecCCcc
Confidence 3589988765443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.7e-07 Score=77.79 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC--CCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF--PTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~--~~~~fD~v~~ 184 (340)
.+|.+|+|-|+|+|.++..+++.. |-++++-+|..+.-.+.|.+.+. .+|+++.+-|+....| .+..+|+|++
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 589999999999999999999986 55899999998888888876532 3689999999977544 3567999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCc-EEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGG-KACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+++.|..++-.++.+||.+| ++....+... ..+.-.+.|+++||..++..++..
T Consensus 184 -----DlPaPw~AiPha~~~lk~~g~r~csFSPCIE----------------Qvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 184 -----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIE----------------QVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred -----cCCChhhhhhhhHHHhhhcCceEEeccHHHH----------------HHHHHHHHHHhCCCceEEEEEeeh
Confidence 78889999999999999887 5444433221 123445688999999988887754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.7e-08 Score=84.03 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=89.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-------------------------------CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------------------------~~ 161 (340)
++.++||||||+-.+-..-+..+ ..+++..|.++..++..++.... ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57899999999966633323221 35799999999888766543110 01
Q ss_pred c-EEEEcCCCCCC-CCC-----CCccEEEecCccccc-CCHH---HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH
Q 019479 162 C-TIIEGDAEDLP-FPT-----DYADRYVSAGSIEYW-PDPQ---RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230 (340)
Q Consensus 162 i-~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~-~d~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 230 (340)
| .++.+|+.+.+ +.. .+||+|++..+++.. .|.+ .+++++.++|||||.|++............- ..+
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~-~~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG-HKF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-EEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-Eec
Confidence 2 36778886533 322 249999999999876 3443 7899999999999999998654432211000 001
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.....+.+.+.+.++++||.+++.+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123488999999999999988887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.3e-07 Score=76.28 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=78.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~ 172 (340)
...+++.+.......-.+.+|||++||+|.++..++.+. ...|+++|.++.+++.++++.. . .+++++++|+.+.
T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA 111 (189)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH
Confidence 334444444433222257899999999999999999982 3589999999999999987632 2 3688999999442
Q ss_pred -C-C-CC-CCccEEEecCcccccCCHHHHHHHHHH--hcccCcEEEEEcc
Q 019479 173 -P-F-PT-DYADRYVSAGSIEYWPDPQRGIKEAYR--VLKIGGKACVIGP 216 (340)
Q Consensus 173 -~-~-~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~--~LkpgG~l~i~~~ 216 (340)
. . .. ..||+|+..--+.. .....++..+.+ .|+++|.+++...
T Consensus 112 l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 112 LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 1 12 24788887544432 233455555544 6888888776643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=85.60 Aligned_cols=104 Identities=20% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCCCCCC----CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL-----KECTIIEGDAEDLP----FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~~~~~----~~~~~fD~v 182 (340)
.|++|||+-|=||.++...+.. |+ +|+.||.|...+++|+++... ..+.++++|+.++- -...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999998886 65 999999999999999988432 34789999996632 234589999
Q ss_pred EecCcc-c--------ccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 183 VSAGSI-E--------YWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 183 ~~~~~l-~--------~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++.--- . -..|...++..+.++|+|||.+++.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 983111 0 01233478899999999999998886543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=81.94 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=79.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CC-C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LP-F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~-~-----~~~~fD 180 (340)
+.++|||||+++|..+..++...| +++++.+|.+++..+.|++.+. .++|+++.+|+.+ ++ + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 678999999999999999998764 6899999999999999987632 3679999999855 22 1 136899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|+.-.- -......++.+.+.|+|||.+++-+.
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 9998532 12234778889999999999876543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-07 Score=79.93 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCC-CCcEE--EEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL-KECTI--IEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~-~~i~~--~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+.+|||+|||+|..+..+.+.++. .+++++|.|+.|++.++..... .+... ...++.....+..+.|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 5779999999999888777777663 5899999999999998876321 11110 011111101112234999999999
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
..+++.. .+++.+.+.+.+ .|+++++..+... ....+.++.|.+.|+.++-
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf------------~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF------------RRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH------------HHHHHHHHHHhhCCCceEC
Confidence 9998732 566666666654 9999998766431 2345566677777776543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=70.04 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=65.6
Q ss_pred CCCEEEEEcCccch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 190 (340)
++.+|||||||+|. .+..+++. +.+|+++|+++..++.++++ .+.++.+|+.+..+. -..+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysirp--- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIRP--- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeCC---
Confidence 56899999999996 88888876 88999999999999999864 468999999874432 345899997432
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-++.+..+.++.+.+ |.-++|..
T Consensus 87 p~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 87 PRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 223334444444433 45566654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-07 Score=86.64 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=69.1
Q ss_pred CCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
+..|+|||||+|.++...++.. ...+|+++|-++.++...+++ .. .++|+++.+|++++..+. ++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 6789999999999988776652 236999999999877665433 22 267999999999987544 79999975
Q ss_pred Cccccc--CCHHHHHHHHHHhcccCcEEE
Q 019479 186 GSIEYW--PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 186 ~~l~~~--~d~~~~l~~~~~~LkpgG~l~ 212 (340)
..-... +-..+.|....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 443222 222478889999999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-08 Score=82.05 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+.++||+|+|.|..+..++..+ .+|++.++|..|..+.+++ +.+++ ...++...+-+||+|.|.+.+...
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk----~ynVl--~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK----NYNVL--TEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc----CCcee--eehhhhhcCceeehHHHHHHHHhh
Confidence 457899999999999999988774 5799999999999998864 21221 122222245579999999999988
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEEc---------cCCCchhHh--hHhhhHhhcC-CCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVIG---------PVYPTFWLS--RFFADVWMLF-PKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~~---------~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.++-+.|+.++.+|+| +|++++.- .+....+.. .++......+ .....+.++|+++||.+......
T Consensus 183 ~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 183 FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 8999999999999999 79887641 111111111 1111111111 12345678899999997655544
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=74.09 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=97.6
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH---HHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ---LAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~---~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+++|||+|.|.-+..++-.+|..+|+.+|....- ++.+.+....+|++++++.+++.......||+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 689999999999999999988899999999998754 45555567778999999999987532122999998754
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 262 (340)
.+......-+...+|+||.++..-.... .--..+.+......|+.++.+........
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~~k~~~~--------------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLAYKGLAG--------------KDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchhhhHHhh--------------hhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 3556677888899999998754321100 00235666778888999999888865443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.5e-07 Score=84.82 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=77.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+|||++||+|..++.++...+..+|+++|+++.+++.++++.. ..++++.++|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 468999999999999999887655689999999999999998743 3456688999865321145699999853 2
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+..++..+.+.+++||.++++
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34467888878889999999998
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=82.43 Aligned_cols=96 Identities=27% Similarity=0.239 Sum_probs=81.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+..++|+|||.|.... ..|...++|.|++...+..+++. +. ....+|+..+|+.+.+||.+++..++||+
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~~s~d~~lsiavihhl 116 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFREESFDAALSIAVIHHL 116 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----CCceeehhhhhcCCCCCCccccchhhhhhhhh
Confidence 58899999999998743 33778899999999999888753 33 57789999999999999999999999999
Q ss_pred CCHH---HHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQ---RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~---~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.... .+++++.|.|+|||..++...
T Consensus 117 sT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 117 STRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 6553 799999999999999877643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-07 Score=77.80 Aligned_cols=96 Identities=26% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
..++.+|+|.-||.|.+++.+++...+..|+++|++|.+++..+++.. ..++..+.+|..++.. ...||-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 357899999999999999999996557899999999999998887622 2458889999987654 77899999864
Q ss_pred cccccCCHHHHHHHHHHhcccCcEE
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l 211 (340)
.-. ...+|..+.+++++||.+
T Consensus 178 p~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS----GGGGHHHHHHHEEEEEEE
T ss_pred hHH----HHHHHHHHHHHhcCCcEE
Confidence 322 235788899999999886
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.6e-07 Score=79.65 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCCC-CCCCCCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAEDL-PFPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~~-~~~~~~f 179 (340)
+...+||-+|.|.|..++++.+. | ..+++-+|++|.|++.+++. ..+++++++..|+.++ .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 46789999999999999998876 6 47999999999999999843 2347799999999764 2344579
Q ss_pred cEEEecCcccccCCHH----------HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 180 DRYVSAGSIEYWPDPQ----------RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~----------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
|.||. +++||. ++..-+.+.|+++|.++++....-. ..+ .--.+..-+++|||
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~----------vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPR----------VFWRIDATIKSAGY 429 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCc----------eeeeehhHHHhCcc
Confidence 99997 455553 6788899999999999887543210 000 01134567899999
Q ss_pred cEEEEEEeCCcc
Q 019479 250 KDVKLKRIGPKW 261 (340)
Q Consensus 250 ~~v~~~~~~~~~ 261 (340)
.+.-.+..-+.+
T Consensus 430 ~~~Pyhv~VPTF 441 (508)
T COG4262 430 RVWPYHVHVPTF 441 (508)
T ss_pred eeeeeEEecCcc
Confidence 987666655544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=82.20 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=77.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC-CCCCC-CccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL-PFPTD-YADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~-~~~~~-~fD~v~ 183 (340)
.+++||-||.|.|..+..+++..+..+++++|+++.+++.+++.. .+++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 689999999999999999988755679999999999999999763 247899999998542 22233 899999
Q ss_pred ecCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....-...+. ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8433211111 1489999999999999998875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=79.08 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=82.9
Q ss_pred CCEEEEEcCc--cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCC-CCC--cEEEEcCCCCCC--CC----CCCcc-
Q 019479 114 NMRVVDVGGG--TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP-LKE--CTIIEGDAEDLP--FP----TDYAD- 180 (340)
Q Consensus 114 ~~~vLDiGcG--~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~--i~~~~~d~~~~~--~~----~~~fD- 180 (340)
-...|||||| |-.+..++++. .|.++|+-+|.+|..+..++..+. .++ ..++.+|+.+.. +. .+-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4689999999 33455556554 588999999999999999998743 345 789999997621 00 11233
Q ss_pred ----EEEecCcccccCC---HHHHHHHHHHhcccCcEEEEEccCCCchh-HhhHhhhHh------hcCCCHHHHHHHHHH
Q 019479 181 ----RYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVW------MLFPKEEEYIEWFQK 246 (340)
Q Consensus 181 ----~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~l~~ 246 (340)
.+++..++|+++| +..+++.+++.|.||.+|.++........ ........+ ...++.+++..+|.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD- 227 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence 6888999999965 56899999999999999999876544221 112222222 22678999999987
Q ss_pred CCCcEEE
Q 019479 247 AGFKDVK 253 (340)
Q Consensus 247 aGF~~v~ 253 (340)
||+.++
T Consensus 228 -g~elve 233 (267)
T PF04672_consen 228 -GLELVE 233 (267)
T ss_dssp -TSEE-T
T ss_pred -CCccCC
Confidence 888765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=80.83 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=80.4
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC-C-CC-------------
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL-P-FP------------- 175 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~-~-~~------------- 175 (340)
+.+|||++||+|.++..+++. ..+|+|+|.++.+++.++++. ...|++++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999998887 468999999999999999873 335789999998652 1 10
Q ss_pred -CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 176 -TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
..+||+|++.---. .-...+++.+.+ |++.+++.... .. -..++..+. + ||++.++
T Consensus 285 ~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC~p-~t---------------larDl~~L~-~-gY~l~~v 341 (362)
T PRK05031 285 KSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISCNP-ET---------------LCENLETLS-Q-THKVERF 341 (362)
T ss_pred cCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEeCH-HH---------------HHHHHHHHc-C-CcEEEEE
Confidence 12589999843211 111244455543 67777766421 10 023444443 3 9998888
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
..+.
T Consensus 342 ~~~D 345 (362)
T PRK05031 342 ALFD 345 (362)
T ss_pred EEcc
Confidence 7765
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-07 Score=85.16 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=105.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++..++|+|||.|.....++.. ....++|+|.++..+..+.... ......++.+|+.+.|++++.||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 5668999999999999988775 5789999999999888887542 1234556889999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhh-----HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSR-----FFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
.|.++...+++|++|++||||..+..+...... .... ...+.........++-+.+...||..+..++
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEK 267 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcc
Confidence 999999999999999999999998865432210 0000 0011111122344566777888888776433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-07 Score=80.87 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCC--CC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLP--FP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~--~~ 175 (340)
+..++++.+.. .++..+||.+||.|..+..+++.++ ..+|+|+|.++.+++.++++... .+++++++|+.++. ..
T Consensus 7 ll~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 34455555543 3678999999999999999999985 58999999999999999987543 57999999997643 12
Q ss_pred C--CCccEEEecCccc--ccCCHH
Q 019479 176 T--DYADRYVSAGSIE--YWPDPQ 195 (340)
Q Consensus 176 ~--~~fD~v~~~~~l~--~~~d~~ 195 (340)
. .++|.|++...+. ++++++
T Consensus 86 ~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 86 EGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred cCCCccCEEEECCCccccccCCCc
Confidence 2 2799999864443 344443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-07 Score=75.15 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=98.3
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCC--CCCCCCCccEEE
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAED--LPFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~--~~~~~~~fD~v~ 183 (340)
.+.+|||+|.| +|..+..++...|...|...|-+++.++..++.... ..+..+..+... ......+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 57899999999 566667777777889999999999999888765221 122222222211 113456899999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+..++..-.-....++.|.+.|+|.|+-++..|-..+ +.+.+.+.....||.+.-.+.+...
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~gf~v~l~enyde~ 170 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVGFTVCLEENYDEA 170 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhceeEEEecccHhHH
Confidence 9999876555568899999999999998887765433 6778888999999998877777654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-07 Score=80.64 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCCC---CCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDLP---FPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~~---~~~~~fD~v~~ 184 (340)
.+++|||+=|=||.++...+.. +..+|+.+|.|..++++++++. ...++++++.|+.+.. -..++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999987765 2358999999999999999872 2356889999996521 12468999998
Q ss_pred cCcc------cccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSI------EYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l------~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.--- .-..+...+++.+.++|+|||.|++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3111 11123347888999999999998776543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-06 Score=77.08 Aligned_cols=119 Identities=9% Similarity=0.012 Sum_probs=78.4
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC-----------C-----
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF-----------P----- 175 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~-----------~----- 175 (340)
.+|||++||+|.++..+++.. .+|+|+|.++.+++.|+++. ...|++++.+|+.++-. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 479999999999999998874 58999999999999999874 23478999999865211 0
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
...||+|++.--= ..-...+++.+. +|++.+++..... . -..++..+. .||++.++.
T Consensus 277 ~~~~d~v~lDPPR--~G~~~~~l~~l~---~~~~ivYvsC~p~-t---------------laRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 277 SYNCSTIFVDPPR--AGLDPDTCKLVQ---AYERILYISCNPE-T---------------LKANLEQLS--ETHRVERFA 333 (353)
T ss_pred cCCCCEEEECCCC--CCCcHHHHHHHH---cCCcEEEEEcCHH-H---------------HHHHHHHHh--cCcEEEEEE
Confidence 1137999873221 111124445544 4777777764211 0 023444333 348888777
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 334 ~~D 336 (353)
T TIGR02143 334 LFD 336 (353)
T ss_pred Ecc
Confidence 764
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=75.32 Aligned_cols=88 Identities=24% Similarity=0.352 Sum_probs=72.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~ 176 (340)
..+.+.+...+... ++..|||||+|.|.++..++++ +.+|+++++++.+++..+++. ...|++++.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 34567777777764 4899999999999999999998 788999999999999999886 4688999999998877654
Q ss_pred C-CccEEEecCcc
Q 019479 177 D-YADRYVSAGSI 188 (340)
Q Consensus 177 ~-~fD~v~~~~~l 188 (340)
- .++.|+++--.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 3 57888876544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-06 Score=79.63 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC-CCCCCccEEEe--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP-FPTDYADRYVS-- 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~-~~~~~fD~v~~-- 184 (340)
.++.+|||+++|.|.-+..++....+ ..+++.|+++.-++..+++ .+..|+.+...|...+. ...+.||.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 47899999999999999999998744 6999999999988888765 44567888888886543 22456999995
Q ss_pred --cCcccccCCH------------------HHHHHHHHHhcccCcEEEEEccCC
Q 019479 185 --AGSIEYWPDP------------------QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 185 --~~~l~~~~d~------------------~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+..-..-.++ .++|..+.+.|||||+|+-++...
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3211111122 278899999999999998776554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6e-06 Score=66.78 Aligned_cols=101 Identities=27% Similarity=0.312 Sum_probs=74.0
Q ss_pred EEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCC---cEEEEcCCCC--CCCCC-CCccEEEecCccc
Q 019479 117 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE---CTIIEGDAED--LPFPT-DYADRYVSAGSIE 189 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~---i~~~~~d~~~--~~~~~-~~fD~v~~~~~l~ 189 (340)
++|+|||+|... .+....+. ..++++|.++.++..++....... +.+...|... .++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33443222 489999999999998665432111 5788888765 67666 489999 544444
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+..+....+.++.+.++|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443478899999999999999988866544
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-07 Score=76.07 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcC
Q 019479 94 GHWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGD 168 (340)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d 168 (340)
++....+++.+...+... -.+.+|||+-||+|.++.+.+.+ +..+|+.+|.++..+...+++.. . .++.++..|
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 345556666666665543 37899999999999999999988 34799999999999999998732 2 347888888
Q ss_pred CCC-CC---CCCCCccEEEecCcccccCCHHHHHHHHH--HhcccCcEEEEEccC
Q 019479 169 AED-LP---FPTDYADRYVSAGSIEYWPDPQRGIKEAY--RVLKIGGKACVIGPV 217 (340)
Q Consensus 169 ~~~-~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~l~i~~~~ 217 (340)
+.. +. ....+||+|++.--...-.....++..+. ..|+++|.+++....
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 643 21 14678999998654443211356777776 789999998887644
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.7e-07 Score=74.84 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------C--C--CCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------P--F--PTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~--~--~~~~fD~ 181 (340)
.+.+|||+||++|.|+..++++. +..+|+|+|+.+.. ..+++.++++|+.+. . + ..+++|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 35899999997651 114455555555321 0 1 1268999
Q ss_pred EEecCcccccCC----HH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 182 YVSAGSIEYWPD----PQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 182 v~~~~~l~~~~d----~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|++..+.....+ .. ..+.-+.+.|+|||.+++-...
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 998764333222 21 4455666789999988876543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.4e-06 Score=73.91 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCC---CCCcEE--EEcCCCC----CCC--CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP---LKECTI--IEGDAED----LPF--PT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~--~~~d~~~----~~~--~~ 176 (340)
.++..|+|+|||+|.-+..+++.+ ...+++++|+|.++++.+.+++. .+.+++ +++|+.+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 467799999999999877776655 24689999999999999988754 245555 7888855 221 11
Q ss_pred CCccEEE-ecCcccccCCHH--HHHHHHHH-hcccCcEEEEEc
Q 019479 177 DYADRYV-SAGSIEYWPDPQ--RGIKEAYR-VLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~-~~~~l~~~~d~~--~~l~~~~~-~LkpgG~l~i~~ 215 (340)
....+++ ...++.+++..+ .+|+++++ .|+|||.+++--
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2345554 456888886654 78999999 999999988853
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=68.41 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.|++++|+|||.|.++..+.- +....|+|+|+++++++.+.+++.. -++++.++|+.++-+..+.||.++.+--+..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 789999999999999855443 3457899999999999999987432 3578899999887767788999998776653
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.3e-06 Score=71.09 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=68.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~ 174 (340)
.+.+.+...++. +++..|||||.|||.++..+++. +.+|+++++++.|+....++... ...+++.+|+...++
T Consensus 45 ~v~~~I~~ka~~-k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 45 LVIDQIVEKADL-KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHHhccCC-CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 455666666666 58899999999999999999998 89999999999999999988432 458899999976543
Q ss_pred CCCCccEEEecCc
Q 019479 175 PTDYADRYVSAGS 187 (340)
Q Consensus 175 ~~~~fD~v~~~~~ 187 (340)
..||.++++.-
T Consensus 122 --P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 --PRFDGCVSNLP 132 (315)
T ss_pred --cccceeeccCC
Confidence 45899998543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-05 Score=62.94 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=94.0
Q ss_pred HHHHHhccccC--CCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCCCC
Q 019479 99 DMRDEALEPAD--LFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDAED 171 (340)
Q Consensus 99 ~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~~~ 171 (340)
.+...++.... ...++.+||-+|..+|.....+++-.+ .+.|++++.|+ +.++.|++| +|+-.+..|+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~ 133 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH 133 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence 34444444332 235899999999999999999999865 68999999999 556677765 788889999965
Q ss_pred CC---CCCCCccEEEecCcccccCCH-HHHHHHHHHhcccCcEEEEEccCCC--c-hhHhhHhhhHhhcCCCHHHHHHHH
Q 019479 172 LP---FPTDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYP--T-FWLSRFFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 172 ~~---~~~~~fD~v~~~~~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l 244 (340)
.. .--+.+|+|++.-. -+|. +-++.++...||+||.+++.-.... . ...... -.+-.+.|
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v----------f~~e~~~L 200 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV----------FAEEVKKL 200 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH----------HHHHHHHH
T ss_pred hHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH----------HHHHHHHH
Confidence 21 22357999997432 1244 3567788889999999988732100 0 000000 12334577
Q ss_pred HHCCCcEEEEEEeCCc
Q 019479 245 QKAGFKDVKLKRIGPK 260 (340)
Q Consensus 245 ~~aGF~~v~~~~~~~~ 260 (340)
++.||++++...+.+.
T Consensus 201 ~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 201 KEEGFKPLEQITLEPY 216 (229)
T ss_dssp HCTTCEEEEEEE-TTT
T ss_pred HHcCCChheEeccCCC
Confidence 8899999999888653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-06 Score=68.86 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=91.0
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDL 172 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~ 172 (340)
.|...+.+...+.+. .++.+||+||-|-|.....+.++ |..+=+.++..|...+..+... ...|+.+..+-.++.
T Consensus 85 ~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred hhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 455555555444443 47899999999999999888777 4566778999999999998762 346788888877663
Q ss_pred --CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 173 --PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 173 --~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.++++.||.|+-..--.+-.|...+.+.+.|+|||+|++-..+
T Consensus 162 l~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3678889999976655777788889999999999999986654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=68.47 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----------CCCcEEEEcCCCCCCCCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----------~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
....+.|||||-|.+...++..+|..-+.|+++--...+..++++. .+|+.+...+.... ..+-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence 4467999999999999999999999999999998888888876621 34566666665431 22223333
Q ss_pred EecCcccccCCHH-------------HHHHHHHHhcccCcEEEEEccCC
Q 019479 183 VSAGSIEYWPDPQ-------------RGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 183 ~~~~~l~~~~d~~-------------~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+.-.++.++|++ ..+.+..-+|++||.++.+..+.
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 3444444555654 57888899999999999876543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=79.89 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=90.1
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC----C--------------------------
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV----D-------------------------- 136 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~-------------------------- 136 (340)
|.....+.+..+.+...++.......++..++|.+||+|.++++.+... |
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 3333344566777888888777664567899999999999998876531 1
Q ss_pred ------------CceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCC--CCCccEEEecCccccc-C---CH
Q 019479 137 ------------AKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFP--TDYADRYVSAGSIEYW-P---DP 194 (340)
Q Consensus 137 ------------~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~~-~---d~ 194 (340)
..+++|+|+++.+++.|+++... ..+.+.++|+.+++.+ .++||+|+++--...- . +.
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l 323 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL 323 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence 13699999999999999988432 3478999999876543 3579999998554322 2 22
Q ss_pred HHHHHHHHHhcc---cCcEEEEEcc
Q 019479 195 QRGIKEAYRVLK---IGGKACVIGP 216 (340)
Q Consensus 195 ~~~l~~~~~~Lk---pgG~l~i~~~ 216 (340)
..+++.+.+.+| +|+.+++...
T Consensus 324 ~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 324 IALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 344444444444 8888877643
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=67.84 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCC-CC-----CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAED-LP-----FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~-~~-----~~~~~fD~ 181 (340)
.++++||||.=||..+..+|...|. ++|+++|+++...+++.+.. ....+++++++..+ ++ ...++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6789999999999999999999875 89999999999999987652 23568999998854 21 34678999
Q ss_pred EEecCcccccC-CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.- ++. +-...+.++.+++|+||.|++-..
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEecc
Confidence 9963 222 224788999999999999988753
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=74.76 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=94.5
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
+.+....++.+.. .++.+|||+=||.|.++..+++. ..+|+|+|+++++++.|++++ ...|++|+.+++++...
T Consensus 279 ekl~~~a~~~~~~-~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLEL-AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 4455555555554 36789999999999999999976 689999999999999999873 34679999999987542
Q ss_pred C---CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 175 P---TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 175 ~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
. ...+|.|+..--=.-. ...+++.+. .++|-..++++.... |...=...|.+.|+++
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYVSCNP~-----------------TlaRDl~~L~~~gy~i 415 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYVSCNPA-----------------TLARDLAILASTGYEI 415 (432)
T ss_pred hccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEEeCCHH-----------------HHHHHHHHHHhCCeEE
Confidence 2 3468999972100000 014445444 457778888875211 2223335778889887
Q ss_pred EEEEEeC
Q 019479 252 VKLKRIG 258 (340)
Q Consensus 252 v~~~~~~ 258 (340)
.++..+.
T Consensus 416 ~~v~~~D 422 (432)
T COG2265 416 ERVQPFD 422 (432)
T ss_pred EEEEEec
Confidence 6666654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=64.18 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=87.6
Q ss_pred CchHHHHHHhccccCC-CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCC
Q 019479 95 HWTEDMRDEALEPADL-FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDA 169 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~ 169 (340)
+.+..+++.+.+.+.. .-.+.++||+=+|+|.++.+.+.+ +...++.+|.+..+....+++. . ..++.++..|+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 4456677777777654 247999999999999999999998 3579999999999999999873 2 35678888888
Q ss_pred CCC-CCCCC--CccEEEecCccc-ccCCHHHHHHH--HHHhcccCcEEEEEccC
Q 019479 170 EDL-PFPTD--YADRYVSAGSIE-YWPDPQRGIKE--AYRVLKIGGKACVIGPV 217 (340)
Q Consensus 170 ~~~-~~~~~--~fD~v~~~~~l~-~~~d~~~~l~~--~~~~LkpgG~l~i~~~~ 217 (340)
... ..... +||+|++.--++ .+-+....+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 632 11222 499999966555 12222333333 34679999999887543
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=71.63 Aligned_cols=124 Identities=23% Similarity=0.201 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---C-CcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~-~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
..|.+|||.=+|.|.+++.++..- ..+|+++|++|.+++..++++.. . .+..+++|..+....-+.+|-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 469999999999999999999982 34499999999999999987432 2 378899999886644477999998743
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
.+...++..+.+.+++||.+-..+......... .....+.....+.|++
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAARKGGYK 314 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHHhhccCc
Confidence 355678889999999999998776654432110 1345666777777753
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.5e-05 Score=67.41 Aligned_cols=120 Identities=22% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.++|||||++|.|+..++++ +.+|++||..+-. ......++|+....|........+.+|.++|.-+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----HhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 57899999999999999999998 7799999975522 2223457888888888654323667999998543
Q ss_pred CCHHHHHHHHHHhcccC--cEEEEEc--cCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 192 PDPQRGIKEAYRVLKIG--GKACVIG--PVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkpg--G~l~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
..|.++++-+.+.|..| ...+++- +....+..... ..+.+.+.|.++|..
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~---------~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQ---------CLELIEEQLDENGIN 333 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHH---------HHHHHHHHHHHcCCc
Confidence 46778888888888766 2333332 22222111111 234567788888873
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.8e-05 Score=66.75 Aligned_cols=108 Identities=25% Similarity=0.230 Sum_probs=76.5
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------- 173 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------- 173 (340)
.++.+...++.++.+|+|+|+-.|.|+..+++.... ..|+|+|+.|.- ..+++.++++|+...+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------cCCCceEEeeeccCccHHHHHHH
Confidence 444455566778999999999999999999998633 569999995522 2357999999997633
Q ss_pred -CCCCCccEEEecCcc----cccCCHH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 174 -FPTDYADRYVSAGSI----EYWPDPQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 -~~~~~fD~v~~~~~l----~~~~d~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+...++|+|++-..- ++..|.. .++.-+..+|+|||.+++-.+.
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 344557999963222 1111221 5567777899999999887543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=64.24 Aligned_cols=149 Identities=18% Similarity=0.061 Sum_probs=94.2
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH----------HHHHHHhCCCCCcEEEEcCCCCCC
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ----------LAKAKQKEPLKECTIIEGDAEDLP 173 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~----------~~~a~~~~~~~~i~~~~~d~~~~~ 173 (340)
+....+ +++.+|+|+=.|.|.|+..++... |...|+++-..+.. -..+++ ....|++.+-.+...+.
T Consensus 41 L~FaGl-kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGL-KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEecc-CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 444444 589999999999999999998876 33577775543321 111111 12245555555555444
Q ss_pred CCCCCccEEEecCccccc-------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 174 FPTDYADRYVSAGSIEYW-------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
+....|+++.....|.+ .....+.+.+++.|||||.+++.+.......- ..........+........+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~--~~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG--LSDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC--hhhhhhhcccChHHHHHHHHh
Confidence 44456777765444433 23357899999999999999998764332110 001111224578889999999
Q ss_pred CCCcEEEEEEeC
Q 019479 247 AGFKDVKLKRIG 258 (340)
Q Consensus 247 aGF~~v~~~~~~ 258 (340)
+||+..-..++.
T Consensus 196 aGFkl~aeS~il 207 (238)
T COG4798 196 AGFKLEAESEIL 207 (238)
T ss_pred hcceeeeeehhh
Confidence 999987777664
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.9e-06 Score=69.73 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=69.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------C--CCCCcEEEEc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------E--PLKECTIIEG 167 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----------~--~~~~i~~~~~ 167 (340)
....++....+ .++...+|||||.|......+-..+-.+++|||+.+...+.|+.. . ....+++..+
T Consensus 30 ~~~~il~~~~l-~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILDELNL-TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHhCC-CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 34444555544 478899999999999998888776556699999999888777632 1 1245778899
Q ss_pred CCCCCCCC---CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 168 DAEDLPFP---TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 168 d~~~~~~~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+.+.++. -...|+|++++.+.. ++....|.+....||+|.+++-..+
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred CccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEECCC
Confidence 98653211 134699999887642 2344667888889999988765443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.5e-06 Score=74.32 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHhC--C---CCCcEEEEcCCCCCCCC--CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKE--P---LKECTIIEGDAEDLPFP--TD 177 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~--~---~~~i~~~~~d~~~~~~~--~~ 177 (340)
.++.+|+|.+||+|.+...+.+.. ....++|+|+++.++..++-+. . ..+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 467789999999999998887742 5789999999999999887552 1 12345778887543322 46
Q ss_pred CccEEEecCccccc--C------C------------H-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCC
Q 019479 178 YADRYVSAGSIEYW--P------D------------P-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236 (340)
Q Consensus 178 ~fD~v~~~~~l~~~--~------d------------~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (340)
.||+|+++--+... . + . ..++..+.+.||+||++.++.+.. .+.. -..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~---~L~~--------~~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG---FLFS--------SSS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH---HHHG--------STH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch---hhhc--------cch
Confidence 89999986433322 1 0 1 157899999999999987775421 1000 001
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCCccccc
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRG 264 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 264 (340)
...+++.|-+.+. +..+..+....+..
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 3456666655433 44556665544433
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=73.38 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=78.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
+.+|||+.||+|..++.++.+.++ .+|+++|+++.+++.++++.. ..++++.+.|+..+- .....||+|.+.- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999988533 689999999999999998743 245788888886532 1235699999854 3
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+..++..+.+.+++||.|.++-
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 244579999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=64.18 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
-.+++|||+|+|+|..++..++. +...|+..|+.|-....++-+...+ ++.+...|.-. .+..||+++...+++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 47999999999999999998887 4578999999887777776554433 35666666643 566799999999998
Q ss_pred ccCCHHHHHHHHHHhcc-cCcEEEEEccCCC
Q 019479 190 YWPDPQRGIKEAYRVLK-IGGKACVIGPVYP 219 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 219 (340)
.-+..++.+. +.+.|+ .|-.+++-++..+
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 7666667777 455554 4555555566554
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=67.33 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
.++.+|||..++.|.=+..+++...+ ..|+++|.++.-++..+++ .+..|+.....|....+ ....+||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 57899999999999999999998654 5679999999888887765 45567778888875443 2223599999
Q ss_pred ec------CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH
Q 019479 184 SA------GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI 241 (340)
Q Consensus 184 ~~------~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (340)
+- +++..-++. .++|..+.+.|||||.|+-.+..... ..+.+.+.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~-------------eENE~vV~ 301 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP-------------EENEEVVE 301 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch-------------hcCHHHHH
Confidence 73 223211211 17899999999999999887654321 12456666
Q ss_pred HHHHHC-CCcEEEE
Q 019479 242 EWFQKA-GFKDVKL 254 (340)
Q Consensus 242 ~~l~~a-GF~~v~~ 254 (340)
..+++. +|+.+..
T Consensus 302 ~~L~~~~~~~~~~~ 315 (355)
T COG0144 302 RFLERHPDFELEPV 315 (355)
T ss_pred HHHHhCCCceeecc
Confidence 677665 6655443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00022 Score=59.36 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=98.5
Q ss_pred HHHHHHhccccC--CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH----HHHHHhCCCCCcEEEEcCCCC
Q 019479 98 EDMRDEALEPAD--LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL----AKAKQKEPLKECTIIEGDAED 171 (340)
Q Consensus 98 ~~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~----~~a~~~~~~~~i~~~~~d~~~ 171 (340)
..+...++.-+. ...++.+||-+|..+|.....+++-.+...+++++.|+... ..|+++ +|+-.+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 344555555443 23589999999999999999999988778999999999654 444443 788889999965
Q ss_pred CC---CCCCCccEEEecCcccccC--CHH-HHHHHHHHhcccCcEEEEEccCCCc---hhHhhHhhhHhhcCCCHHHHHH
Q 019479 172 LP---FPTDYADRYVSAGSIEYWP--DPQ-RGIKEAYRVLKIGGKACVIGPVYPT---FWLSRFFADVWMLFPKEEEYIE 242 (340)
Q Consensus 172 ~~---~~~~~fD~v~~~~~l~~~~--d~~-~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 242 (340)
.. .--+..|+|+. .+. +.. -+..++...||+||.+++.--.... ...... -++-.+
T Consensus 136 P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~ 200 (231)
T COG1889 136 PEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVE 200 (231)
T ss_pred cHHhhhhcccccEEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHH
Confidence 22 23456899886 333 332 4567889999999987775322110 000011 123345
Q ss_pred HHHHCCCcEEEEEEeCCc
Q 019479 243 WFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 243 ~l~~aGF~~v~~~~~~~~ 260 (340)
.|++.||++++...+.+.
T Consensus 201 kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 201 KLEEGGFEILEVVDLEPY 218 (231)
T ss_pred HHHhcCceeeEEeccCCc
Confidence 788899999999888653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.9e-05 Score=63.31 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=83.1
Q ss_pred EEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CCCCCCCccEEEecCccccc
Q 019479 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~ 191 (340)
|.||||-.|.+...+.+.....+++++|+++..++.|++... ..++++..+|-.+ ++ +.+..|.|+..++-...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 689999999999999998544689999999999999997632 3569999999643 43 22337888887765532
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...+|.+....++....+++.. +. ....++++|.+.||.+++..-+.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP-~~-----------------~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQP-NT-----------------HAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEE-SS------------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeC-CC-----------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence 3456676666666555666553 22 46788999999999998877663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=64.55 Aligned_cols=146 Identities=22% Similarity=0.166 Sum_probs=96.0
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcE-EEEcCCCCCC---CCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECT-IIEGDAEDLP---FPTDY 178 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~-~~~~d~~~~~---~~~~~ 178 (340)
.+++...+..++..+||||+.||.|+..++++ +..+|+++|..-.++.+--+. ++++. +...|+..+. +. +.
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~--d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN--DPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc--CCcEEEEecCChhhCCHHHcc-cC
Confidence 34455555568999999999999999999998 457999999988777664432 24433 3445554432 22 25
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh-------hhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-------ADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
.|++++.-++. ....+|..+..+++|++.++... .|.....+.. .+......-..++.+++++.||++
T Consensus 145 ~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 145 PDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred CCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 78999876655 45689999999999998876542 1212111111 111111123577888999999998
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
..+..-
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 776543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.6e-06 Score=67.17 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=50.6
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCCCC--CCCCC-ccEEEec
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAEDLP--FPTDY-ADRYVSA 185 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~~~--~~~~~-fD~v~~~ 185 (340)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.+ .+ .++++++++|+.+.. +.... +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 36999999999999999998 57899999999999999977 22 468999999996642 22222 8999974
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.8e-05 Score=75.44 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCC-----CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDL-----PFPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~-----~~~~ 176 (340)
...+|||.|||+|.+...+++..+ ...++|+|+++.++..++.++.. ..+.+...|.... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999999887653 15789999999999999876321 1344555554321 1112
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
+.||+|+.+--..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999974443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=70.96 Aligned_cols=70 Identities=31% Similarity=0.429 Sum_probs=50.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED 171 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~ 171 (340)
+.+...+++.+... + .+|||+-||.|.++..+++. ..+|+|+|.++.+++.|+++ ....|++|+.++.++
T Consensus 183 ~~l~~~~~~~l~~~-~-~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLS-K-GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT--T-TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcC-C-CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 44555566666542 3 38999999999999999998 57999999999999999977 345789999887754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.5e-05 Score=67.47 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=76.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~ 176 (340)
..+.+.+++.+... ++..|||||+|.|.++..+++. +.+++++|.++..++..+++.. .++++++.+|+.++....
T Consensus 16 ~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 44556666666543 7899999999999999999998 4899999999999999998754 678999999998876544
Q ss_pred ---CCccEEEecCcccccCCHHHHHHHHHHhccc
Q 019479 177 ---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
Q Consensus 177 ---~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 207 (340)
.....|+++--. ++ ...++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 344566665333 22 23566666663333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.4e-06 Score=65.33 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccC
Q 019479 162 CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 162 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.+++-.....+|.+++.|+|++.++++|+.-. ..++++|+|.|||||+|-+..|.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 344443344567899999999999999999644 37899999999999999987654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.3e-05 Score=61.04 Aligned_cols=104 Identities=23% Similarity=0.152 Sum_probs=70.2
Q ss_pred ccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CCCCC--------CCCC
Q 019479 107 PADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DAEDL--------PFPT 176 (340)
Q Consensus 107 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~~~~--------~~~~ 176 (340)
...++.++.+|||+||-.|.|+.-..++. |.+.|.|+|+-.- ...++++++++ |+.+. .+++
T Consensus 63 Ky~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 63 KYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred hccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 34556789999999999999999988886 8899999999321 22345666666 66541 1567
Q ss_pred CCccEEEecCcc----cccCCHHHHHHHH-------HHhcccCcEEEEEccCC
Q 019479 177 DYADRYVSAGSI----EYWPDPQRGIKEA-------YRVLKIGGKACVIGPVY 218 (340)
Q Consensus 177 ~~fD~v~~~~~l----~~~~d~~~~l~~~-------~~~LkpgG~l~i~~~~~ 218 (340)
...|+|++...- ..+.|....++-| ...++|+|.+++-....
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789998863221 1223444444444 45678999998875443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=66.48 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--------------------------------c-
Q 019479 92 NPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--------------------------------K- 138 (340)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~- 138 (340)
.+.+..+.+...++...... ++..++|--||+|.++++.+...++ .
T Consensus 171 g~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 171 GPAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 44456677778888777764 5689999999999999998877531 1
Q ss_pred ------eEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc-cCCH---H----HHHHH
Q 019479 139 ------NVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY-WPDP---Q----RGIKE 200 (340)
Q Consensus 139 ------~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~d~---~----~~l~~ 200 (340)
.++|+|+++.+++.|+.++. .+-|+|.++|+..+..+-+.+|+||++--..- +.+. . .+.+.
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 37799999999999998732 24589999999887644378999999755431 2222 2 23334
Q ss_pred HHHhcccCcEEEEEc
Q 019479 201 AYRVLKIGGKACVIG 215 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~ 215 (340)
+.+.++--++.+++.
T Consensus 330 lk~~~~~ws~~v~tt 344 (381)
T COG0116 330 LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcCCceEEEEc
Confidence 445555556666664
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=65.18 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCCEEEEEcCccchH-HHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFT-TLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~-~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.+.+|+=||||.=-+ ++.+++.+ ++..|+++|+++++++.+++... ..+++|+.+|..+....-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997555 44455443 46789999999999999987533 367999999997765444679999986
Q ss_pred Cccc-ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIE-YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~-~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.... .-.+..+++.++.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 6554 33466799999999999999988763
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=57.93 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCccchHHHHHHH-----hCCCceEEEEeCCHHHHHHHHHhC---C---CCCcEEEEcCCCCCCCCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKE---P---LKECTIIEGDAEDLPFPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~---~---~~~i~~~~~d~~~~~~~~~~fD 180 (340)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++. . ..++.+..++..+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4678999999999999999999 5 6789999999999998888662 2 145666666654432 245567
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+++.-+....+. ..+++.+.+ ++-..++.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 888755555432 245555554 55554443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.4e-05 Score=61.71 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+.|+|+|+|.++...++. ..+|++++.+|...+.|.++. ...|++++.+|+.+..+ ...|+|+|-..=-.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 68999999999999987776 679999999999999999884 34689999999988776 447999873211111
Q ss_pred --CCHHHHHHHHHHhcccCcEEEE
Q 019479 192 --PDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 192 --~d~~~~l~~~~~~LkpgG~l~i 213 (340)
.....+++.+...||-.+.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 1223677888888888888753
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=65.11 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=93.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHhCC----------------C----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-------KQKEP----------------L---------- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~----------------~---------- 159 (340)
...+||--|||.|.++..++.. +..+-|-+.|--|+-.. +.... +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999998 66677777766554221 11100 0
Q ss_pred ----------CCcEEEEcCCCCC---CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH
Q 019479 160 ----------KECTIIEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226 (340)
Q Consensus 160 ----------~~i~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 226 (340)
.+...-.||+.+. +-..+.||+|+.++-+..-.+.-..++.|..+|||||..+=..|..-+.....-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0111233566432 122346999999876666666668899999999999998766654322111111
Q ss_pred hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 227 FADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.........+.+++..+.+..||++++.+.+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 01111124578999999999999998887664
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00067 Score=63.18 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=85.0
Q ss_pred CCCEEEEEcCccchHHHHHHHh---------------CCCceEEEEeCCHHHHH-HHH------HhC---------CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH---------------VDAKNVTILDQSPHQLA-KAK------QKE---------PLKE 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~g~D~s~~~~~-~a~------~~~---------~~~~ 161 (340)
+..+|+|+|||+|.++..+... .|..+|..-|+-..--. ..+ +.. ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999877655321 14577888787321111 111 000 0011
Q ss_pred ---cEEEEcCCCCCCCCCCCccEEEecCcccccCCH--------------------------------------HHHHHH
Q 019479 162 ---CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKE 200 (340)
Q Consensus 162 ---i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~ 200 (340)
+.-+.+++..--+|.++.+++++.+++||+... ..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122345665545789999999999999988521 133444
Q ss_pred HHHhcccCcEEEEEccCCCc-----------hh---HhhHhhhHhh----------------cCCCHHHHHHHHHHCC-C
Q 019479 201 AYRVLKIGGKACVIGPVYPT-----------FW---LSRFFADVWM----------------LFPKEEEYIEWFQKAG-F 249 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~-----------~~---~~~~~~~~~~----------------~~~~~~~~~~~l~~aG-F 249 (340)
=.+-|.|||+++++...... .+ ....+.++.. ..++.+|+++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 45678999999988543321 01 1111111111 1468999999999887 5
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
++.+++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 555554443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=65.57 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=69.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP---- 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~---- 173 (340)
+.+++++.+.. .++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.++++... .++.++++++.++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 44555555544 467899999999999999999988779999999999999999987532 47999999997643
Q ss_pred -CCCCCccEEEecCcc
Q 019479 174 -FPTDYADRYVSAGSI 188 (340)
Q Consensus 174 -~~~~~fD~v~~~~~l 188 (340)
...+++|.|++...+
T Consensus 87 ~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 87 ELLVTKIDGILVDLGV 102 (305)
T ss_pred hcCCCcccEEEEeccC
Confidence 233569999976444
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00024 Score=66.94 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=83.4
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
.++|-+|||.-.++..+-+. +...++-+|+|+..++....+.. .+-..+...|...+.+++++||+|+....++++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 48999999999888887665 34689999999999999887643 2347889999999999999999999999998873
Q ss_pred CH-H---------HHHHHHHHhcccCcEEEEEcc
Q 019479 193 DP-Q---------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 193 d~-~---------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. . ..+.++.|+|++||+.+.+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 22 1 457899999999999877654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.1e-05 Score=61.43 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=42.5
Q ss_pred EEEcCccchHHHHHHHhCCC---ceEEEEeCCHH---HHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCccc
Q 019479 118 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSPH---QLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~---~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~ 189 (340)
||||+..|..+..+++..+. .+++++|..+. .-+..++.....+++++.++..+. + +..+++|+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 69999999999888876543 37999999883 444444322235799999999542 2 3357899999754 23
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.....++.+.+.|+|||.+++-+
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 23344567889999999999998754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=57.44 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=46.7
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCC
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAED 171 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~ 171 (340)
+|+|||||.|.++..+++..+..+++++|+++.+.+.++++.. .+++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999999877899999999999999887632 3457777776644
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00021 Score=60.29 Aligned_cols=72 Identities=24% Similarity=0.187 Sum_probs=58.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC----CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL----PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~----~~~~~~fD~v~~ 184 (340)
....|+|.-||.|..++.++.+ +..|+++|++|.-+..|+.++. .++|+|+++|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999998 6789999999999999998743 35899999999653 344445777776
Q ss_pred cC
Q 019479 185 AG 186 (340)
Q Consensus 185 ~~ 186 (340)
..
T Consensus 172 sp 173 (263)
T KOG2730|consen 172 SP 173 (263)
T ss_pred CC
Confidence 54
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=62.79 Aligned_cols=129 Identities=23% Similarity=0.303 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC--CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL--PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~ 185 (340)
.++.+|||++++.|.-+..+++... ...+++.|+++.-+...+++ .+..++.....|.... ......||.|++.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4788999999999999999999875 58999999999988888754 5567778777777543 1233469999972
Q ss_pred ------CcccccCCH----------------HHHHHHHHHhc----ccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHH
Q 019479 186 ------GSIEYWPDP----------------QRGIKEAYRVL----KIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239 (340)
Q Consensus 186 ------~~l~~~~d~----------------~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
.++..-++. .++|+.+.+.+ ||||+++-.+..... ..+.+.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~-------------eENE~v 230 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP-------------EENEEV 230 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG-------------GGTHHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH-------------HHHHHH
Confidence 222222222 16899999999 999999877543211 124556
Q ss_pred HHHHHHHC-CCcEEE
Q 019479 240 YIEWFQKA-GFKDVK 253 (340)
Q Consensus 240 ~~~~l~~a-GF~~v~ 253 (340)
+...+++. .|+.+.
T Consensus 231 V~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 231 VEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHSTSEEEEC
T ss_pred HHHHHHhCCCcEEEe
Confidence 66677765 555443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00089 Score=53.11 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=69.2
Q ss_pred eEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEecCcccccCC------HH---HHHHHHHH
Q 019479 139 NVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSAGSIEYWPD------PQ---RGIKEAYR 203 (340)
Q Consensus 139 ~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~d------~~---~~l~~~~~ 203 (340)
+|+|+|+.+++++.+++++. ..+++++..+=+.+. .+.+++|+++.+...-.-.| ++ .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 58999999999999998843 246899888776654 23347999998744332222 22 67899999
Q ss_pred hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 204 VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 204 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.|+|||.+.++...-+....... ....+|.+-|....|.+.....++
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~--------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEES--------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHH--------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred hhccCCEEEEEEeCCCCCCHHHH--------HHHHHHHHhCCcceEEEEEEEccC
Confidence 99999999888654322111110 013445555666788888777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=54.70 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+.+.++.||||-.+.+...+.+..+...+++.|+++..++.|.+... .++++...+|-...--.+..+|.|+..++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 35677999999999999999999888999999999999999987643 24577788887432223446899988776
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
-... ...+|++-.+.|+-=-++++. |+. ...+++++|.+.+|+++...-+.
T Consensus 95 GG~l--I~~ILee~~~~l~~~~rlILQ-Pn~-----------------~~~~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 95 GGTL--IREILEEGKEKLKGVERLILQ-PNI-----------------HTYELREWLSANSYEIKAETILE 145 (226)
T ss_pred cHHH--HHHHHHHhhhhhcCcceEEEC-CCC-----------------CHHHHHHHHHhCCceeeeeeeec
Confidence 5532 235566666666533345444 332 46788999999999987766554
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=57.44 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+.+.+|+|||||.=-++.......++..++|+|++..+++...... ...+.++...|+..-+ +....|+.++.-+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 3578999999999999888887777889999999999999988652 2256677788886543 456689999999888
Q ss_pred ccCCHHH-HHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWPDPQR-GIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~d~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+..... .--++.+.++ .-.++++.|...-.....-+.. .-...+..++...|+. ++...+
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~-----~y~~~fe~~~~~~~~~-~~~~~~ 244 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQ-----TYSAWFEALAAERGWI-VDRLTF 244 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHH-----CHHHHHHHHCCTTCEE-EEEEEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCcccccc-----CHHHHHHHhcccCCce-eeeeec
Confidence 7754431 2122233332 2355666554432111111111 1134566666677777 333333
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00078 Score=60.75 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCC----CCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECTIIEGDA----EDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~----~~~~~~~~~fD~v~~ 184 (340)
.+++|||+|.|.|.-+...-..+|. ..++.++.|+..-+...... ..........|+ ..++ ....|++||.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhhh
Confidence 5678999999999887777777776 46888899887666554331 111111222333 2233 2345777776
Q ss_pred cCcccccCCH---HHHHHHHHHhcccCcEEEEEccCCCchh
Q 019479 185 AGSIEYWPDP---QRGIKEAYRVLKIGGKACVIGPVYPTFW 222 (340)
Q Consensus 185 ~~~l~~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 222 (340)
.+-+-+.... ...++.+..++.|||.|+|++...+..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 6555554433 2578899999999999999998876543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00099 Score=56.41 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=68.4
Q ss_pred CCCEEEEEcCccchHHHHHHHh---C-CCceEEEEeCCHHHHHHHH-H-hCCCCCcEEEEcCCCCCC-------C-CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAK-Q-KEPLKECTIIEGDAEDLP-------F-PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~g~D~s~~~~~~a~-~-~~~~~~i~~~~~d~~~~~-------~-~~~~ 178 (340)
++..|+|+|.-.|..+..++.. + +.++|+|+|+......... + .-..++|+++++|..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5789999999998887776653 3 5689999999543332221 1 112378999999986532 1 1122
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc-CCCHHHHHHHHHHCC-CcE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML-FPKEEEYIEWFQKAG-FKD 251 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aG-F~~ 251 (340)
..+|+ -.+-|...+.-+.|+.....+++|+++++.+...........-...|.. -.....+.++|.+.. |++
T Consensus 112 ~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~i 185 (206)
T PF04989_consen 112 PVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEI 185 (206)
T ss_dssp SEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEE
T ss_pred ceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEe
Confidence 33444 4555555677788999999999999999887543322211111111211 123556777777655 443
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0041 Score=56.85 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|+-+|+| -|..+..+++.. +.+|+++|.+++-.+.|++.... .++... ......-.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd---~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD---HVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc---EEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 578999999987 567888999976 59999999999999999976432 233322 2111111223999997443
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+....+.|++||+++++...
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678889999999999998755
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0031 Score=58.22 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----------------CCceEEEEeCCHH-HHHHHHHh-------CCCCC--cEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSPH-QLAKAKQK-------EPLKE--CTII 165 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~~v~g~D~s~~-~~~~a~~~-------~~~~~--i~~~ 165 (340)
+..-+|+|+||.+|..+..+.... |..+|+--|+-.. .-...+.. ...++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466799999999999988765421 2368888887321 11111100 01133 3346
Q ss_pred EcCCCCCCCCCCCccEEEecCcccccCCH------------------------H---------------HHHHHHHHhcc
Q 019479 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDP------------------------Q---------------RGIKEAYRVLK 206 (340)
Q Consensus 166 ~~d~~~~~~~~~~fD~v~~~~~l~~~~d~------------------------~---------------~~l~~~~~~Lk 206 (340)
.+.+..--+|+++.|++++.+++||+... . .+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 68887666889999999999999987421 0 23444445689
Q ss_pred cCcEEEEEccCCCc--------hhHhhHhhhHhh--------------------cCCCHHHHHHHHHHCC-CcEEEEEEe
Q 019479 207 IGGKACVIGPVYPT--------FWLSRFFADVWM--------------------LFPKEEEYIEWFQKAG-FKDVKLKRI 257 (340)
Q Consensus 207 pgG~l~i~~~~~~~--------~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~aG-F~~v~~~~~ 257 (340)
|||+++++....+. ......+...|. .+++.+++.+.+++.| |++.+++.+
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~ 254 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF 254 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence 99999987543322 011111111111 1568999999998765 665555544
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=56.54 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=58.9
Q ss_pred CCC--EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---C------CC---CCcEEEEcCCCCC-CCCCC
Q 019479 113 RNM--RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---E------PL---KECTIIEGDAEDL-PFPTD 177 (340)
Q Consensus 113 ~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~------~~---~~i~~~~~d~~~~-~~~~~ 177 (340)
++. +|||+-+|.|..+..++.. |++|+++|-++.+....++. . .. .+++++.+|..++ .-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 445 8999999999999999998 88899999999887776643 1 11 4578888888552 22234
Q ss_pred CccEEEecCccccc
Q 019479 178 YADRYVSAGSIEYW 191 (340)
Q Consensus 178 ~fD~v~~~~~l~~~ 191 (340)
+||+|++--++.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 79999998777664
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00066 Score=64.28 Aligned_cols=65 Identities=31% Similarity=0.401 Sum_probs=53.2
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCC
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAED 171 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~ 171 (340)
+-+++.. +.+..+||+.||||.++..+++. ..+|+|+++++++++-|+.++. ..|++|+++-+++
T Consensus 375 i~e~~~l-~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 375 IGEWAGL-PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHhCC-CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 3344444 46799999999999999999987 6899999999999999998744 4678999996655
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0013 Score=59.35 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----C
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-----F 174 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-----~ 174 (340)
.+.++.+.. .++..++|.--|.|..+..+++.+|+++++|+|.++.+++.++++.. .+++.++.+++.++. .
T Consensus 10 ~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 334444433 47789999999999999999999988999999999999999998855 468999999997643 2
Q ss_pred -CCCCccEEEec
Q 019479 175 -PTDYADRYVSA 185 (340)
Q Consensus 175 -~~~~fD~v~~~ 185 (340)
...++|.|++-
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 34578988874
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0011 Score=62.92 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCC-CCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~ 187 (340)
.-..|+|..+|.|.|+..|.+. | |..+..-+ ..+...-. .+..-+..|. +.++.-+.+||+|++.++
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd----RGLIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD----RGLIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh----cccchhccchhhccCCCCcchhheehhhh
Confidence 4568999999999999999776 2 44433322 22222222 1222344566 346667889999999988
Q ss_pred ccccCC---HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 188 IEYWPD---PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 188 l~~~~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+....+ ...+|-|+-|+|+|||.++|-+... ..++++.++....++..
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEE
Confidence 877643 4588999999999999999987532 24566777777777754
|
; GO: 0008168 methyltransferase activity |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.073 Score=46.16 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCC-CC-CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAED-LP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l 188 (340)
.+++||-+|=.. ..++.++-..+..+|+.+|+++..++..++.+.. -+++.+..|+.+ +| .-.++||+++..-.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 689999999554 3344444444568999999999999888755321 238888999965 44 22478999997321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+.......++.+....||.-|................ ..++.+.+.+.||.+.++..
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~-----------~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK-----------WLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH-----------HHHHHHHHHTS--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH-----------HHHHHHHHHHCCcCHHHHHh
Confidence 1122234788999999987664333332222110000 12566778899999877654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=55.58 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-----------CC------
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-----------LP------ 173 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-----------~~------ 173 (340)
.++.+|+-+|||. |..+...++.. |.+|+++|.+++..+.+++. . .++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-G---A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-G---AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---CeEEEeccccccccccchhhhcchhHHHH
Confidence 3689999999995 77788888886 56899999999999999874 2 2222211111 00
Q ss_pred ----CCC--CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 174 ----FPT--DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ----~~~--~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.+ ..+|+||.......-+.+..+.+++.+.+||||+++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589999866554433454456999999999999887643
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.003 Score=53.77 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=69.7
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhC----C-C-c---eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHV----D-A-K---NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------- 173 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~----~-~-~---~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------- 173 (340)
++..-.+++|+..-.|.|+..+.++. + . . .++++|+.+. ...+++.-+++|+....
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCceEEeecccCCHhHHHHHHH
Confidence 33456789999999999999998875 1 1 1 3999999442 23467888899997632
Q ss_pred -CCCCCccEEEecC-----cccccCCHH------HHHHHHHHhcccCcEEEEE
Q 019479 174 -FPTDYADRYVSAG-----SIEYWPDPQ------RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 174 -~~~~~fD~v~~~~-----~l~~~~d~~------~~l~~~~~~LkpgG~l~i~ 214 (340)
|..++.|+|+|.. .+|.++..- .+|.-...+|||||.++--
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 5567899999954 456554331 4566777899999998653
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0067 Score=53.01 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------C--CCcEEEEcCCCCC---CCCCCC-c
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L--KECTIIEGDAEDL---PFPTDY-A 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~--~~i~~~~~d~~~~---~~~~~~-f 179 (340)
...+|||+|+|+|..+..++.. .+..|+..|. +..++..+.+.. . ..+.+...+.... .+..+. +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4678999999999777777665 4789999998 444433332211 0 1333333333221 122233 9
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|+|++..++.+-.....++..++..|..+|.+++.....
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999999988888889999999999999766665443
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=51.29 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC--CCC------CCCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA--EDL------PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~--~~~------~~~~~~fD~v 182 (340)
+.+.+||-+|+| .|..+...++.++..+|+.+|+++.-++.|++ +....+......- .++ ......+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 579999999999 48888888999888999999999999999998 4433222222111 110 1223458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+-...++ ..++.....++.||.+++......
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 8765554 467778889999999888765443
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0016 Score=49.10 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=42.6
Q ss_pred CccEEEecCcccccC----C--HHHHHHHHHHhcccCcEEEEEccCCCchhH-----hhHhhhHhhcCCCHHHHHHHHHH
Q 019479 178 YADRYVSAGSIEYWP----D--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL-----SRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~----d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
.||+|+|..+.-++- | ...+++++++.|+|||.+++.-.....+.. ......+......++++.+.|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 489999988876541 1 137899999999999999887322111111 01111111112356678888887
Q ss_pred --CCCcEEEEEEeC
Q 019479 247 --AGFKDVKLKRIG 258 (340)
Q Consensus 247 --aGF~~v~~~~~~ 258 (340)
.||..++.....
T Consensus 81 ~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 81 PEVGFSSVEELGVP 94 (110)
T ss_dssp TTT---EEEEE---
T ss_pred cccceEEEEEcccC
Confidence 599988755543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0061 Score=53.95 Aligned_cols=100 Identities=22% Similarity=0.299 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~--~~~~~~fD~v 182 (340)
..+++||-||.|.|...+..+++-.-..+..+|+....++..++.. ..+++....+|-..+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3678999999999999998888722357889999998888888752 346788888887442 2346889999
Q ss_pred EecCcccccCCH---------HHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDP---------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~---------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.- .+|+ ...+.-+.+.||++|+++++..
T Consensus 200 i~d-----ssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITD-----SSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEe-----cCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 973 3333 2567778899999999998863
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.02 Score=48.44 Aligned_cols=115 Identities=15% Similarity=0.021 Sum_probs=68.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCC-------------------
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP------------------- 158 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~------------------- 158 (340)
+.+..+..... ..+.++.|-+||.|.++.-+.-.++. ..|+|-|+++.+++.|++++.
T Consensus 39 i~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 39 IFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 33333443332 36779999999999998777666544 589999999999999987620
Q ss_pred --------------------------CCCcEEEEcCCCCCC-----CCCCCccEEEecCcccccCCHH---------HHH
Q 019479 159 --------------------------LKECTIIEGDAEDLP-----FPTDYADRYVSAGSIEYWPDPQ---------RGI 198 (340)
Q Consensus 159 --------------------------~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~d~~---------~~l 198 (340)
.......+.|+.+.. ......|+|+..--..++.+|+ .+|
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 012456777876621 1122369999876666555543 689
Q ss_pred HHHHHhcccCcEEEEEc
Q 019479 199 KEAYRVLKIGGKACVIG 215 (340)
Q Consensus 199 ~~~~~~LkpgG~l~i~~ 215 (340)
..++.+|..++++.+++
T Consensus 198 ~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 198 NSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHCCS-TT-EEEEEE
T ss_pred HHHHhhCCCCcEEEEec
Confidence 99999996556666644
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.014 Score=45.12 Aligned_cols=71 Identities=13% Similarity=-0.011 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
.+++|+|||.+.|..++.++-+ +...|++++.++...+..++.....++-=......+++-.-+.||+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999999888 4578999999999999998765433321111111234434456887765
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=53.99 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=63.7
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+||-+||| .|..+..+++.....+|+++|.+++..+.+++.-...-+.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 57899999986 4677778888763347999999999999998642211011111122221112235898885422
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ...++.+.+.|++||++++...
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999998764
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=54.89 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCC-C-CC-CCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AED-L-PF-PTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~-~-~~-~~~~fD~v~~~~ 186 (340)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++......+.+...+ +.. + .+ ....+|+|+-.-
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4688999999988 88999999987444699999999999999875322111111111 100 1 11 233689888643
Q ss_pred c---------------ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 S---------------IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~---------------l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ++...+....+.++.+.|+++|++++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2 11224456688999999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=53.25 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCEEEEEcCccc-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCC-----CCCCCCCccEE
Q 019479 114 NMRVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAED-----LPFPTDYADRY 182 (340)
Q Consensus 114 ~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~-----~~~~~~~fD~v 182 (340)
..++||||||.- .+.+..++.+ +.+++|+|+++..++.|+++.. ..+|+++...-.. +....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 578999999975 5556556655 8899999999999999997632 2457776543211 22334679999
Q ss_pred EecCcccccCC
Q 019479 183 VSAGSIEYWPD 193 (340)
Q Consensus 183 ~~~~~l~~~~d 193 (340)
+|+--++.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 99988876543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.015 Score=50.02 Aligned_cols=96 Identities=21% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
+++.+||-+|+++|.....+.+-. |..-|++++.|+ ..+..|+++ +||..+..|+.... ..-+-.|+|+
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEEe
Confidence 689999999999999988888876 457899999987 456666654 77888888886521 2223467776
Q ss_pred ecCcccccC--CHHH-HHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWP--DPQR-GIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~--d~~~-~l~~~~~~LkpgG~l~i~~ 215 (340)
+ ++. |..+ +.-++.-.||+||.+++.-
T Consensus 232 a-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 A-----DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred c-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 5 333 3333 3446778899999998863
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.027 Score=52.49 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-C-CC-CCCCC-CCccEEEecCc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-A-ED-LPFPT-DYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~-~~-~~~~~-~~fD~v~~~~~ 187 (340)
++.+|+-+|||+ |.++..+++.++..+|+++|.++.-++.|++......+.....+ . .. ..... ..+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 444999999995 88888889988779999999999999999985432222211111 1 00 11222 36999996554
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
....+..+.+.++|||.+.+.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2348899999999999999886543
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.14 Score=44.48 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=71.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHh--CCCCC--cEEEEcCCCC-CC-CCC-CCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQK--EPLKE--CTIIEGDAED-LP-FPT-DYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~--~~~~~--i~~~~~d~~~-~~-~~~-~~fD~ 181 (340)
.+...+|+|+|+..-+..+.+.+.. .+++.+|+|...++...+. ...+. +.-+++|.+. +. .+. +.==.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999888888777643 6899999999877655433 22344 4456777753 11 122 22234
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
++...++..+... ..+|..+...|+||-.+++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 5667777777433 37899999999999988774
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.067 Score=47.59 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=88.6
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCC--------CCCCCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLP--------FPTDYA 179 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~--------~~~~~f 179 (340)
...|+.+|||--.-...+... ++.+++=+|. |++++.-++.+. ..+..++..|+.+.+ +....-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999976655554322 2477888888 667666555432 356788888986211 112223
Q ss_pred cEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCch-h----HhhHh-------hhHhhcCCCHHHHHHHHH
Q 019479 180 DRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTF-W----LSRFF-------ADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-~----~~~~~-------~~~~~~~~~~~~~~~~l~ 245 (340)
-++++-.++.+++... .+++.+.+...||+.+++........ . ..... ...+....+.+++.++|+
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 4788888888987654 78999998888999888754322111 0 01100 011122357899999999
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
+.||+..+.
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999998665
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.17 Score=45.49 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=79.2
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC--CCCccEEEecCccccc--
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP--TDYADRYVSAGSIEYW-- 191 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~~-- 191 (340)
+|+|+-||.|.+...+.+. +...+.++|+++.+++..+.+... .++++|+.++... ...+|+++...-...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---CCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 6899999999998888776 234578899999999999877542 2567788765422 3569999986544322
Q ss_pred -------CCHH-HHHHHHHH---hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 192 -------PDPQ-RGIKEAYR---VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 192 -------~d~~-~~l~~~~~---~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.|.. ..+.++.+ .++|. +++.+.+..-.... .-...+.+.+.|++.||.+. ...+..
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~~-~~~l~a 145 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNVY-WKLLNA 145 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEEE-EEEEEH
Confidence 2332 23333333 34443 44554443211000 01135678888999999853 344433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.027 Score=50.32 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC--
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-- 173 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-- 173 (340)
.+..+.++.+.. .++...+|.--|.|..+..+++.++. .+++|+|.++.+++.|+++.. ..++.++++++.++.
T Consensus 10 VLl~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhccc-CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence 355556666555 36789999999999999999999875 579999999999999999853 368999999886643
Q ss_pred ---CCCCCccEEEecCc
Q 019479 174 ---FPTDYADRYVSAGS 187 (340)
Q Consensus 174 ---~~~~~fD~v~~~~~ 187 (340)
...+++|.|+..-.
T Consensus 89 l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 89 LKELGIGKVDGILLDLG 105 (314)
T ss_pred HHhcCCCceeEEEEecc
Confidence 23457888886433
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=54.59 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=82.7
Q ss_pred chHHHHHHhccccCCCCC--CCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEE
Q 019479 96 WTEDMRDEALEPADLFDR--NMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKE---PLKECTIIE 166 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~ 166 (340)
+.+.+...+++..+.-.. ...|+-+|+|.|-+.....+.. ...++++++-+|.++-..+.+. -..+++++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 344455555555433222 5678999999998766554431 2468999999999887776542 135799999
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCH---HHHHHHHHHhcccCcEEE
Q 019479 167 GDAEDLPFPTDYADRYVSAGSIEYWPDP---QRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 167 ~d~~~~~~~~~~fD~v~~~~~l~~~~d~---~~~l~~~~~~LkpgG~l~ 212 (340)
.|+..++.+..+.|++++ ..|..+.|. .+.|..+.+.|||.|..+
T Consensus 428 ~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred ccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 999998855688998874 455555555 389999999999998764
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.057 Score=50.27 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
++++.+|||..+-.|.=+..+|....+ +.|++.|.+..-+...+++ .+-.|..+...|..++| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 368999999999999888888776533 7899999999888888765 34466777778876654 444 799998
Q ss_pred ecCcccc------------cCCH----------HHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEY------------WPDP----------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~------------~~d~----------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+-.-..- +... .+.|..+...+++||+|+-.+..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 6322111 1111 16777888999999999877543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.055 Score=54.94 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=79.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------C-----CceEEEEeCCH---HHHHHHHHhC--------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQSP---HQLAKAKQKE-------------------- 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~g~D~s~---~~~~~a~~~~-------------------- 157 (340)
+.-+|+|+|=|+|.+.....+.+ | ..+++.+|..| +.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999877666544 2 25889999643 3333322110
Q ss_pred ------CCC--CcEEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHh
Q 019479 158 ------PLK--ECTIIEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLS 224 (340)
Q Consensus 158 ------~~~--~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 224 (340)
... ++++..+|+.+ ++.....+|++++.. +.--.++ ..++++++++++|||.+.--.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 011 23456678754 232235699999742 2222334 389999999999999986332
Q ss_pred hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 225 RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....++.-|.++||++.+....
T Consensus 207 -----------~a~~vr~~l~~~GF~v~~~~~~ 228 (662)
T PRK01747 207 -----------SAGFVRRGLQEAGFTVRKVKGF 228 (662)
T ss_pred -----------hHHHHHHHHHHcCCeeeecCCC
Confidence 3456778899999987665444
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.24 Score=40.84 Aligned_cols=133 Identities=21% Similarity=0.091 Sum_probs=85.0
Q ss_pred EEcCccchHHHHHHHhCC-CceEEEEeC--CHHHHHHHH---Hh---CCCCCcEE-EEcCCCCCC----CCCCCccEEEe
Q 019479 119 DVGGGTGFTTLGIVKHVD-AKNVTILDQ--SPHQLAKAK---QK---EPLKECTI-IEGDAEDLP----FPTDYADRYVS 184 (340)
Q Consensus 119 DiGcG~G~~~~~l~~~~~-~~~v~g~D~--s~~~~~~a~---~~---~~~~~i~~-~~~d~~~~~----~~~~~fD~v~~ 184 (340)
=||=|.=.++..+++.++ +..+++.-+ ..+..+... ++ +...++++ ...|+..+. .....||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788889999876 556666544 333333322 11 22234443 345665543 35678999998
Q ss_pred cCcccc--cCC----H-------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 185 AGSIEY--WPD----P-------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 185 ~~~l~~--~~d----~-------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
++-..- ..+ . ..+++.+.++|+++|.+.|+-..... ++.-++.++.+++||..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVL 147 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEE
Confidence 754332 111 1 16788999999999999888543322 24456778999999999
Q ss_pred EEEEEeCCcccccc
Q 019479 252 VKLKRIGPKWYRGV 265 (340)
Q Consensus 252 v~~~~~~~~~~~~~ 265 (340)
++...+....|++.
T Consensus 148 ~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 148 VRKVPFDPSDYPGY 161 (166)
T ss_pred EEEecCCHHHCCCc
Confidence 99998877666554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.035 Score=48.11 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=45.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH---h----CCC-----CCcEEEEcCCCC-CCCCCCCccE
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---K----EPL-----KECTIIEGDAED-LPFPTDYADR 181 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~---~----~~~-----~~i~~~~~d~~~-~~~~~~~fD~ 181 (340)
.+|||.-+|-|..+..++.. |++|+++|-||.+....+. + ... .+++++.+|..+ +..++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999999875 7899999999976555442 1 111 368999999966 5556789999
Q ss_pred EEecCcccc
Q 019479 182 YVSAGSIEY 190 (340)
Q Consensus 182 v~~~~~l~~ 190 (340)
|++--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999877765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.27 Score=45.23 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC----ceEEEEeCCHHHHHHHHH---hCCCCCcEEEEcCCCCCC---------CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDLP---------FP 175 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~---~~~~~~i~~~~~d~~~~~---------~~ 175 (340)
+++.+|||.++-.|.=+..+.+..-. ..|++-|.++.-+..... +...+++.+...|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 68999999999999999888887422 379999998866555543 344455555555554333 12
Q ss_pred CCCccEEEecC------cccccCCH-----------------HHHHHHHHHhcccCcEEEEEccCC
Q 019479 176 TDYADRYVSAG------SIEYWPDP-----------------QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 176 ~~~fD~v~~~~------~l~~~~d~-----------------~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
...||-|++.- ++.+.++. -.+|++..++||+||+|+-.+...
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 34589888631 11111111 167889999999999998876543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0084 Score=48.34 Aligned_cols=132 Identities=17% Similarity=0.040 Sum_probs=77.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCC-CCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAED-LPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~ 191 (340)
+++++-+|... -|...++-.++..++.-+|.++--++.- .. +++ ++...|+.. +....++||.+.+.++++|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~---~~-dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEE---FR-DRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHF 76 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcc---cc-cccccccHHHHHHHHHHhhccchhhheechhccc
Confidence 56788888884 4555556665667888888755221111 00 111 222333321 22345679999999999887
Q ss_pred C--------CH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 P--------DP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~--------d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
- |+ .+.+.++.++|||||.|++..|.-.+...-. .++.+....+.-++ .||+.+.....
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN-----ahRiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN-----AHRIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe-----cceeecHhHHHHHh--CCcEEEeeecc
Confidence 2 22 2788999999999999999877654211000 01122334443333 68888776544
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.028 Score=50.58 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=70.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--------------------CCceEEEEeCCH--HHHHHHHHhCCC-----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEPL----------- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~--~~~~~a~~~~~~----------- 159 (340)
+..+||.||+|.|.-...++..+ +...++.+|+.+ ..++........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666666554 114899999865 344443322111
Q ss_pred ---------CCcEEEEcCCCCCCCC-------CCCccEEEecCccccc-----CCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 160 ---------KECTIIEGDAEDLPFP-------TDYADRYVSAGSIEYW-----PDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~~~~-------~~~fD~v~~~~~l~~~-----~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
=+++|.+.|+..+..+ .+..|+|.+.+++..+ ..--++|.++-..++||..|+|++..
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 1378899999665421 1246888877666533 23348899999999999999998743
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.019 Score=44.96 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=61.1
Q ss_pred ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEEecCcccccCCHHH
Q 019479 123 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYVSAGSIEYWPDPQR 196 (340)
Q Consensus 123 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~d~~~ 196 (340)
|.|..+..+++..+ .+|+++|.++.-.+.+++.... .++..+-.++ . .....+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc---ccccccccccccccccccccccceEEEEecC------cHH
Confidence 46889999999875 9999999999999999875311 1222221110 1 23347999986432 246
Q ss_pred HHHHHHHhcccCcEEEEEccCC
Q 019479 197 GIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 197 ~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.++....+|+++|++++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.08 Score=51.45 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=66.9
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--------------------
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-------------------- 171 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-------------------- 171 (340)
++.+|+-+|+|. |..+..+++.. +..|+++|.++...+.+++. . .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-G---a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-G---AEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---CeEEeccccccccccccceeecCHHHHHHH
Confidence 578999999995 57777777775 67899999999988888763 2 2232222211
Q ss_pred ---CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 172 ---LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 172 ---~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
++-.-..+|+||..-.+..-+.+.-+.++..+.+|||+.++-.
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111245999987665555455556788899999999987643
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.072 Score=47.17 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=51.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHhCCC---------CCcEEEEcCCCCCCCCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECTIIEGDAEDLPFPT 176 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~---------~~i~~~~~d~~~~~~~~ 176 (340)
+.+|+|+|+|+|.++..+++.+. ..+++.+|.|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999999988653 35899999999999888887543 12333 33443333
Q ss_pred CCccEEEecCcccccC
Q 019479 177 DYADRYVSAGSIEYWP 192 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~ 192 (340)
..-+|+++.++..++
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 346788888887775
|
; PDB: 4F3N_A 1ZKD_B. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.16 Score=47.17 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+||-+|+| .|..+..+++.. +.+|++++. ++.-.+.+++... ..+.....+..+. ...+.+|+|+-...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga-~~v~~~~~~~~~~-~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA-TYVNSSKTPVAEV-KLVGEFDLIIEATG 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC-EEecCCccchhhh-hhcCCCCEEEECcC
Confidence 367899999987 477778888875 668999986 6777777775321 1111111111110 11245898886432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
....+.+..+.|++||++++....
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEecC
Confidence 123678889999999999887543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.086 Score=49.45 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC----CC-CcEEEEcCCCCC-CCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP----LK-ECTIIEGDAEDL-PFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~----~~-~i~~~~~d~~~~-~~~~~~fD~v~~~ 185 (340)
.+.+|||.=+|+|.=++..+...++ .+|+.-|+|+++++.++++.. .. .+++.+.|+..+ ......||+|=+.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3569999999999999999888654 689999999999999998732 12 477788888553 2246779998752
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+-.+..+|..+.+.++.||.|.++..
T Consensus 129 ----PfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 ----PFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----CCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 334566899999999999999999843
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.082 Score=48.54 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
..+|+|.=+|+|.=++.++...+..+|+.-|+||.+++.++++...+ +...+..|+..+- .....||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 68999999999999999999876669999999999999999884433 4555556664432 12356887753 2
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-+-.+.-++..+.+.++.||.|.++-
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 33355678899999999999998873
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.027 Score=49.84 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------CC---CCC---cEEEEcCCCCCCC-
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EP---LKE---CTIIEGDAEDLPF- 174 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-------~~---~~~---i~~~~~d~~~~~~- 174 (340)
...-.+++|||+|||+|.-.+..... ....++..|.+...++...-- .. .++ ......+..++-+
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~ 190 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN 190 (282)
T ss_pred heEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh
Confidence 33347899999999999998887776 237899999988877432210 00 011 1111111111111
Q ss_pred CCC--CccEEEecCcccccCCHHHH-HHHHHHhcccCcEEEEE
Q 019479 175 PTD--YADRYVSAGSIEYWPDPQRG-IKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~--~fD~v~~~~~l~~~~d~~~~-l~~~~~~LkpgG~l~i~ 214 (340)
..+ .||+|.++.++...+..+.. .......+++.|.+++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 112 68999999888887776666 55666677888887654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.024 Score=42.49 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 145 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~ 145 (340)
+....+|||||.|.+..-+... |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4567899999999999888887 889999998
|
; GO: 0008168 methyltransferase activity |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.19 Score=46.58 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-+||| .|..+..++++ .++.+|+++|.+++-++.+++ ... .....+. . ....+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---TYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---eeehhhh---h-hccCCcEEEECCCC-
Confidence 468899999986 45566666665 455789999999988888874 211 1111111 1 11248988843221
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
......+....+.|++||++++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123578889999999999988753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.21 Score=45.29 Aligned_cols=140 Identities=12% Similarity=0.152 Sum_probs=91.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC------CcEEEEcCCCCCC----CCCCCc----
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECTIIEGDAEDLP----FPTDYA---- 179 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~i~~~~~d~~~~~----~~~~~f---- 179 (340)
...|+-+|||--.-+..+-.. ++.+|+-+|. |+.++.-++.+... ..+++..|+.+.. +....|
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 478999999854333222211 2478888998 88887776664321 5889999997322 232223
Q ss_pred -cEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhh-------Hh-------hhHhhcCCCHHHHHH
Q 019479 180 -DRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-------FF-------ADVWMLFPKEEEYIE 242 (340)
Q Consensus 180 -D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~ 242 (340)
=++++-+++.+++.. +++++.|.....||..++............. .. ...+....+..++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 478888999999755 3899999999999988877754222111110 00 112222346899999
Q ss_pred HHHHCCCcEEEEE
Q 019479 243 WFQKAGFKDVKLK 255 (340)
Q Consensus 243 ~l~~aGF~~v~~~ 255 (340)
++.+.||..+...
T Consensus 251 ~l~~~g~~~~~~~ 263 (297)
T COG3315 251 WLAERGWRSTLNR 263 (297)
T ss_pred HHHhcCEEEEecC
Confidence 9999999987664
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.55 Score=45.83 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhCCCCC----cEEEEcCCCCCC-C----CCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKE----CTIIEGDAEDLP-F----PTDY 178 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~----i~~~~~d~~~~~-~----~~~~ 178 (340)
.+..+|.|..||+|.+.....+.+. ...++|.|.++.....++-+....+ +....+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999999887776652 2679999999999999997632222 334444443322 2 3366
Q ss_pred ccEEEecCccc---ccC---------------------CH-HHHHHHHHHhcccCcEEEEEcc
Q 019479 179 ADRYVSAGSIE---YWP---------------------DP-QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~---~~~---------------------d~-~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
||+|+++--+. +.. .. ...+.++...|+|||+..++-+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 99999864332 110 01 2678999999999987776644
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.67 Score=42.37 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~~~~~~fD~v~~ 184 (340)
.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++.. ++.+..+-+.. ......+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 567899998876 478888888875 678999999999988886532 11221111110 123456898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.. ....++++.+.|+++|+++....
T Consensus 239 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 322 13578889999999999987753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.26 Score=39.23 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=73.4
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~ 172 (340)
+.+..+..+..+.- ++..+.+|+|+|.|......++. .-...+|+++++-.+..++-+ .-.....|..-|+...
T Consensus 57 tteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 57 TTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred cHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 33444555555543 45568999999999999888887 236889999999988887744 1124577888888666
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+.+ |..|+.+.+-.-++|.+ .++..-|..|.+++-.-+..+
T Consensus 135 dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 135 DLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred cccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCC
Confidence 5544 44444444433344433 344445566777765544333
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.76 Score=40.27 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l 188 (340)
.++.+||..|+|. |..+..+++.. +.+|++++.++...+.+++.....-+.....+... . ....+.+|+++....-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 4788999999985 77777777775 68999999998888887654211001100000000 0 1123569999864321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+..+.+.|+++|+++....
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEEcc
Confidence 1456778889999999987754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.11 Score=45.27 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=48.5
Q ss_pred EEEEcCCCCC--CCCCCCccEEEecCccc----c-----c--C---CH-HHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 163 TIIEGDAEDL--PFPTDYADRYVSAGSIE----Y-----W--P---DP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 163 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~-----~--~---d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
+++++|..+. .++++++|+|+..--.. . + . ++ ...+.+++|+|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666442 36677788877652111 0 0 0 11 368899999999999887643211
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....+...++++||...+....
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~IiW 97 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLVF 97 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEEE
Confidence 1234567889999997665444
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.27 Score=44.84 Aligned_cols=88 Identities=20% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+||-+||| .|.++..+++..+...|+++|.++..++.+.+.. + .|..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~--i~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------V--LDPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------c--cChhhc--cCCCCCEEEECCC----
Confidence 56789989986 5778888888864445778899887777665321 1 111111 2345898885432
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|+++|++++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467888999999999988753
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.88 Score=34.62 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=63.1
Q ss_pred CccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcccccCCHH
Q 019479 122 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 195 (340)
Q Consensus 122 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~d~~ 195 (340)
||.|..+..+++.+ .+.+|+.+|.+++.++.+++. .+.++.+|..+.. ..-..+|.|++.. ++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEcc-----CCHH
Confidence 44456666665543 245899999999999998864 3779999997632 2334678777642 2333
Q ss_pred --HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 196 --RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 196 --~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
..+....+.+.|..+++.... ..+..+.|+++|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~--------------------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN--------------------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES--------------------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--------------------CHHHHHHHHHCCcCEE
Confidence 234455566777777776532 2344567777777643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.15 Score=46.01 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=48.6
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
..-..+.+.++.... .+|..|||.=||+|..+....+. +.+.+|+|++++.++.|++|+.
T Consensus 192 ~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 192 QKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 334556666665543 48999999999999999987776 8899999999999999998853
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.21 Score=41.61 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~ 181 (340)
++..|+|+|.-.|..++.++... ...+|+++|++-...+.+..+ .+++.|+.++-.+.. ...+.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 67889999999888777766642 127999999987665544332 378999999876532 12222245
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
.++-.+-|+....-+.|+-..+.|.-|-++++.+.+..+
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 556666776666667788888999999999998766554
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.32 Score=48.33 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.0
Q ss_pred CEEEEEcCccchHHHHHHHhCC----CceEEEEeCCHHHHHHHHHh----CCC--------CCcEEEEcCCCCCCCCC--
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQK----EPL--------KECTIIEGDAEDLPFPT-- 176 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~----~~~--------~~i~~~~~d~~~~~~~~-- 176 (340)
..|+-+|+|.|-+.....+... ..++++||-++..+.....+ ..+ ..|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4699999999988766555431 36899999996643333222 122 23899999998864321
Q ss_pred ---------CCccEEEecCcccccCCHH---HHHHHHHHhccc----CcE
Q 019479 177 ---------DYADRYVSAGSIEYWPDPQ---RGIKEAYRVLKI----GGK 210 (340)
Q Consensus 177 ---------~~fD~v~~~~~l~~~~d~~---~~l~~~~~~Lkp----gG~ 210 (340)
+++|+||+ ..|..+-|.+ +.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36998885 4455554553 889999999987 776
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.59 Score=43.01 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++.+||-.|+| .|..+..+++.. +.+|++++.+++-.+.+++.-... + .|..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~---v--i~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAAS---A--GGAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCce---e--cccccc--CcccceEEEECCCc--
Confidence 578899999975 456677777775 678999999999888888753211 1 111111 12357877643322
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+....+.|++||++++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.14 Score=43.97 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=42.1
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
.....+.+.++...- .++..|||.=||+|..+....+. +.+.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 334456666665543 47899999999999999988777 8899999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.46 Score=43.65 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcC---CCCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGD---AEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d---~~~~~~~~~~fD~v~~~~~ 187 (340)
++.+||..|||. |..+..+++.. +. .+++++.++...+.+++... . .++..+ +.........+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-D--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-C--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678899888875 67777778775 55 79999999988887765321 1 111111 1111112234899986432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...++.+.+.|+++|+++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 235788899999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.083 Score=50.22 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCC----CcEEEEcCCCCC----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK----ECTIIEGDAEDL----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~----~i~~~~~d~~~~----~~~~~~fD~v 182 (340)
.++.+|||.=|++|.-++..+...|+ .+|++.|.++..++..+++.... .++....|+..+ +-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 36789999999999999999999887 58999999999999888774433 244556666331 2335679988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+. ..-.+..+|+.+.+.++.||.|.++..
T Consensus 188 DLD----PyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLD----PYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecC----CCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 752 223445799999999999999998743
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.21 Score=44.89 Aligned_cols=99 Identities=21% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|.-||.| .|..+..++--. +++|+.+|+|..-+......+. .++.....+...+...-.++|++|..-.+---
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 34577789988 477777777664 7899999999888777765544 34566655554443344678999976666566
Q ss_pred CCHHHHHHHHHHhcccCcEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i 213 (340)
..|.-+.++....||||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 7778889999999999999864
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.27 Score=46.05 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC-CC-CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAE-DL-PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~-~~-~~~~~~fD~v~~~~~ 187 (340)
+++.+||-.|+| .|..+..+++.. +. +|+++|.++...+.+++.-...-+.....|.. .+ ....+.+|+|+-...
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 467889989986 466777777775 55 79999999999998875422100111111110 00 011235898885321
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+....+.|+++|++++...
T Consensus 269 ------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467888899999999988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.34 Score=45.95 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEE-EEc-CCC--CCCCC-CCCccEEE
Q 019479 113 RNMRVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTI-IEG-DAE--DLPFP-TDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~-~~~-d~~--~~~~~-~~~fD~v~ 183 (340)
.+..+.|+|.|.| .++......--...++.||.|..|.......... .+-.. +.. -+. .+|.. .+.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 5667888888765 4555544442246799999999999888765432 11111 111 111 13433 34599999
Q ss_pred ecCcccccCCHH----HHHHHHHHhcccCcEEEEEccCCC
Q 019479 184 SAGSIEYWPDPQ----RGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 184 ~~~~l~~~~d~~----~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+.+.++++.+.. ..-...++..++|+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999987664 223345556789999999876543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.37 Score=44.87 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C-C-CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L-P-FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~-~-~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| .|..+..+++.. +. +|+++|.++...+.+++... .. +.....+..+ + . .....+|+|+-.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA-THTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-ceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 478899999986 366777788876 55 59999999999999875422 11 1111111100 0 0 122358988843
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. . ...++...+.+++||++++...
T Consensus 253 ~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 22 1 2467778899999999988764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.065 Score=41.84 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=49.7
Q ss_pred cEEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCC
Q 019479 162 CTIIEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236 (340)
Q Consensus 162 i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (340)
+++..+|+.+ ++.-...||+|+... +..-.++ ..++++++++++|||.+..-. .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 5567888854 332337799999754 3333344 389999999999999874321 2
Q ss_pred HHHHHHHHHHCCCcEEEEEEeC
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...++..|.++||.+.+....+
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-ST
T ss_pred hHHHHHHHHHcCCEEEEcCCCC
Confidence 3567889999999988777765
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.19 Score=46.30 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
+.+-..|+|+|.|.|.++..+.-.+ +..|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 3466799999999999999998886 7899999999887777764
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.1 Score=42.60 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=65.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (340)
..+.++......-++++|+-+|+|. |......++.. +.+|+++|.++.-.+.|+.. +.... +.++. -..
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e~---v~~ 257 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEEA---VKE 257 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHHH---HcC
Confidence 3344444444444799999999995 66666666665 67999999999888877753 22221 11111 134
Q ss_pred ccEEEecCcccccCCHHHHHHH-HHHhcccCcEEEEEcc
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKE-AYRVLKIGGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~-~~~~LkpgG~l~i~~~ 216 (340)
+|+|+.... . ..++.. ..+.+|+||+++....
T Consensus 258 aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 258 GDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 799986432 2 234554 5899999999988763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.01 E-value=1.4 Score=40.64 Aligned_cols=123 Identities=21% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~ 190 (340)
..+++|+=||.|.+..-+... +---+.++|+++.+++.-+.+... ..++..|+.+.. +....+|+++...-...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 468999999999999888776 224567899999999988877543 455667775433 11116899998655554
Q ss_pred c---------CCHH----HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 191 W---------PDPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 191 ~---------~d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
+ .|+. --+.++...++| .+++.+.+..-... .-.+.+.+.+.|++.||.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---------CchHHHHHHHHHHHcCCc
Confidence 3 2333 234556666778 66666654321111 223678899999999997
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.37 Score=41.91 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=46.2
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
.-..+.+.++.... .++..|||.=||+|..+....+. +.+++|+|++++..+.+.++.
T Consensus 148 kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 148 KPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence 33455555554433 47889999999999999987776 789999999999999998774
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.25 Score=45.47 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----C----CceEEEEeCCHHHHHHHHHhC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~----~~~v~g~D~s~~~~~~a~~~~ 157 (340)
.+..++|+|.|+|.++..+++.. | ..++..+++|++..+.-++++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 46789999999999999887754 3 578999999999888777664
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.57 Score=41.97 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CCC-C-CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDA-EDL-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~~-~-~~~~~fD~v~~~~~ 187 (340)
++.+||-+|+| .|..+..+++.. +. +|+++|.++.-.+.+++.-...-+.. .+. ... . .....+|+|+-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~--~~~~~~~~~~~~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEP--EVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCc--hhhHHHHHHHhCCCCCCEEEECCC
Confidence 67899999886 466677777775 55 49999999988888876422110110 111 000 0 12235898875321
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....++.+.+.|+++|++++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13467888999999999988764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.62 Score=42.85 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~ 187 (340)
.++.+||-+|+| .|..+..+++.. +.+ |+++|.+++..+.+++.....-+.....+...+ . .....+|+|+-...
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 468899999885 456667777775 556 999999999888886542211011111111011 0 12236899885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+....+.|+++|++++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22356777889999999987754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.93 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----C-C-CCCCcc----
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL----P-F-PTDYAD---- 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~----~-~-~~~~fD---- 180 (340)
+++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++.-...-+.....+..++ . . ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 4688999999975 77777888876 568999999999999887642111011111110000 0 1 112344
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|+-. . -....++.+.+.|++||++++...
T Consensus 244 ~v~d~-----~-g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFEC-----S-GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEEC-----C-CChHHHHHHHHHHhcCCeEEEECc
Confidence 45421 1 113466778889999999988764
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.2 Score=39.08 Aligned_cols=122 Identities=15% Similarity=0.031 Sum_probs=74.6
Q ss_pred EEEEcCccchHHHHHHHhCCCceE-EEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC-CCCCccEEEecCccccc---
Q 019479 117 VVDVGGGTGFTTLGIVKHVDAKNV-TILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW--- 191 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~~~v-~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~--- 191 (340)
|+|+-||.|.+..-+.+. +.++ .++|+++.+++.-+.+... .+..+|+.++.. .-..+|+++...-...+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 689999999999988776 5664 5799999999998877542 445678766532 12348998875433322
Q ss_pred ------CCHH-HHHHHHHHh---cccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 192 ------PDPQ-RGIKEAYRV---LKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 192 ------~d~~-~~l~~~~~~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.|.. ..+.+..++ ++| .+++.+.+..-.... .-.....+.+.|++.||.+..
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEEE
Confidence 2333 334444444 455 355555443211000 011346778889999998643
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.75 Score=43.28 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-----CCC-C-CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-----AED-L-PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-----~~~-~-~~~~~~fD~v~ 183 (340)
+++.+||-+|+| .|..+..+++..+..+|+++|.+++..+.+++.-. . .++... +.+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 578899999986 46677777877633379999999999999976422 1 122111 110 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
-... ....+....+.+++| |++++...
T Consensus 274 d~~G------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 5332 124677888889997 99887653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.28 Score=46.80 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=74.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCC-------CCCCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAED-------LPFPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~-------~~~~~~~fD~v 182 (340)
.+..+|-+|-|.|.+...+...+|..+++++++.|++++.|++.... .+..+...|-.+ ....+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46688999999999999999888989999999999999999987432 112222222211 01134568988
Q ss_pred Ee----cCcccccCCH------HHHHHHHHHhcccCcEEEEEccCCC
Q 019479 183 VS----AGSIEYWPDP------QRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 183 ~~----~~~l~~~~d~------~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+. .. .|-+..+ ..+|..+...|.|.|.+++......
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 85 22 3333222 2688899999999999988754444
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.89 Score=42.02 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC--CCCCCCcc-EEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL--PFPTDYAD-RYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~--~~~~~~fD-~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++.. +. .|+++|.+++..+.+++.....-+.....+...+ ......+| +|+-..
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 468899999986 466677777776 55 4789999999888886532110011111110000 01223577 555321
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-....+.+..+.|++||++++...
T Consensus 238 ------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 ------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 113477888999999999988764
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.86 Score=41.99 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCC-CCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPT-DYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~-~~fD~v~~~~ 186 (340)
+++.+||-.|+ |-|.++..+++... ..++++--+++-.+.+++...+.-+.+...|+.+ . .+.. ..+|+|+-.-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56899999995 56789999999974 3777777778777777765443334444454422 1 1223 3699999532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
. ...+.+..+.|+++|+++......
T Consensus 220 G-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 2 246677899999999998876543
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.28 Score=46.00 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCC--CCCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCC
Q 019479 160 KECTIIEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 160 ~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
++++++.+++.+. ..+++++|.+++.....++++.. +.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 7899999999663 25678999999999999987653 789999999999999998765544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=91.11 E-value=3.2 Score=37.81 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=78.6
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCccccc-
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGSIEYW- 191 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~- 191 (340)
+++|+-||.|.+..-+.+. +...+.++|+++.+++.-+.+.. ....+|+.++. ++. .+|+++...-...+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 7899999999999998887 22467899999999999887754 77888987754 333 59999975443332
Q ss_pred --------CCHH-HH---HHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 192 --------PDPQ-RG---IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 192 --------~d~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.|.. .+ +-++.+.++|. +++.+.+..-...... ...+.+.+.|++.|+.+ ....+..
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vlna 144 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLNA 144 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEEG
T ss_pred ccccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccc--------cccccccccccccceee-hhccccH
Confidence 2332 12 33344556773 3344433221100000 13467888999999975 4555544
Q ss_pred ccc
Q 019479 260 KWY 262 (340)
Q Consensus 260 ~~~ 262 (340)
..|
T Consensus 145 ~~y 147 (335)
T PF00145_consen 145 ADY 147 (335)
T ss_dssp GGG
T ss_pred hhC
Confidence 444
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=37.84 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++......+..... . ......+|+|+....-
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~d~vl~~~~~- 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTA---D-EIGGRGADVVIEASGS- 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccch---h-hhcCCCCCEEEEccCC-
Confidence 4788899998875 67777777775 556 9999999998887775421111110000 0 1123458988853211
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+.+..+.|+++|+++...
T Consensus 170 -----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 -----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -----hHHHHHHHHHhcCCcEEEEEe
Confidence 236788899999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.54 Score=44.16 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=57.4
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|+-+|+| .|..+...+... +.+|+++|.+++..+.+.+.... .+.....+.+++.-.-..+|+|+..-.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 45679999998 566777777765 56899999998877766544321 1111111111111111358999975322111
Q ss_pred CCHHHHHHHHHHhcccCcEEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+.-+-++..+.+|||+.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 11222235666778999887654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.12 Score=48.21 Aligned_cols=59 Identities=29% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCC
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIEGDA 169 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~ 169 (340)
..+++|..|-|+-||.|-++..++.+ +++|++.|++++++++.+.+... .+++....|+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 35578999999999999999999998 79999999999999999987543 2355555555
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.9 Score=39.32 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-+|+| .|..+..+++.. +.+|++++.+++..+.+++.. .. .++...-.... ...+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG-AD--EVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC-Cc--EEeccCCcchHHhccCCCCEEEECCC--
Confidence 467889999987 677777777775 678999999999888885432 11 11111100000 01245898885321
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|+++...
T Consensus 235 ----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ----cHHHHHHHHHhcccCCEEEEEC
Confidence 1236788899999999998775
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.92 E-value=3.2 Score=39.08 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCEEEEEcCccch----HHHHHHHhC---CCceEEEEeC----CHHHHHHHHHhCC----CCC--cEEEE---cCCCCC
Q 019479 113 RNMRVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CTIIE---GDAEDL 172 (340)
Q Consensus 113 ~~~~vLDiGcG~G~----~~~~l~~~~---~~~~v~g~D~----s~~~~~~a~~~~~----~~~--i~~~~---~d~~~~ 172 (340)
+..+|+|+|.|.|. +...++.+. |..++||++. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 56799999999995 333344442 4479999999 7777777765521 123 33333 233332
Q ss_pred -----CCCCCCccEEEecCcccccCC-------HHHHHHHHHHhcccCcEEEEE
Q 019479 173 -----PFPTDYADRYVSAGSIEYWPD-------PQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 173 -----~~~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+.+=+|-+...+|++.+ +...+=...+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 123333334556667788752 222333445578998665554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.6 Score=40.56 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++...... +..... ++.+ + ....+.+|+|+-.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 57889999997 4788888888885 6789999999988888764333221 111111 1111 0 1112458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ...+..+.+.|++||++++...
T Consensus 236 vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEECc
Confidence 22 1367888999999999987753
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.91 Score=42.70 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEE--cCCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIE--GDAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~--~d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| -|..+..+++......|+++|.+++..+.+++.-. .. +.... .+..+ + ....+.+|+|+-.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-TDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-cEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 578999999885 46666777777633469999999998888875422 11 11110 01111 0 0112358988853
Q ss_pred CcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
.. ....+....+.+++| |++++...
T Consensus 271 ~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 271 VG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 22 123577888899998 99987653
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.62 E-value=7.3 Score=35.26 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCC------------------------CcEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK------------------------ECTII 165 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~------------------------~i~~~ 165 (340)
.....|+.+|||.-.....+...+ ....++=+|.++....++......+ +-..+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 466789999999998888888775 4578888999776666662211111 11112
Q ss_pred EcCCCCCC----------CCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhh-h---
Q 019479 166 EGDAEDLP----------FPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA-D--- 229 (340)
Q Consensus 166 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~--- 229 (340)
-.|+.++. ...+-.-++++-.++.+++... ..++.+...-.. +.+++-+...+.....+... .
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~~~D~Fg~vM~~nlk~ 244 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQINPNDRFGKVMLANLKR 244 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccCCCChHHHHHHHHHHh
Confidence 22332111 0011122344445555554332 455555555444 44444444433333222211 1
Q ss_pred ------HhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 230 ------VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 230 ------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
....+.+.+..++-+.++||+.+.+.++..-
T Consensus 245 r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei 281 (335)
T KOG2918|consen 245 RGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEI 281 (335)
T ss_pred cCCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHH
Confidence 1223678999999999999999998887543
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.86 Score=39.30 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=57.0
Q ss_pred CchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHH-HHhCCCceEEEEeCCHHHHHHHHHhCCC-C----CcEEEEc
Q 019479 95 HWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPL-K----ECTIIEG 167 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l-~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~----~i~~~~~ 167 (340)
.+.+.+.+.+....... .++.++||||.|.--.--.+ ...| +.+.+|.|+++..++.|+..... + .++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 34444444444444333 36778999998853221111 1223 67899999999999999876321 1 2443322
Q ss_pred CC-C----CCCCCCCCccEEEecCccccc
Q 019479 168 DA-E----DLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 168 d~-~----~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.- . ...-..+.||+++|+--+|..
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCccccccccccccceeeeEecCCCcchh
Confidence 21 1 112235789999999888854
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.37 E-value=1.6 Score=40.76 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.++.....+.+..... .++. .+...+....+.+|+|+-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD--SFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc--EEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 467889889986 567777788875 678888887765443332222211 1111 111111101124888885322
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+.++.+.|++||+++....
T Consensus 257 ----~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ----AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12367888999999999987753
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.5 Score=40.09 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CCCC--CCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DAED--LPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~~~--~~~~~~~fD~v~~~~~ 187 (340)
+++.+|.-+||| -|..++.-+......+++++|+++.-+++|++.-...-+.-... |+-+ ....+...|.++-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e--- 260 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE--- 260 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE---
Confidence 588999999997 57778888888777899999999999999997632111111111 2211 1133445777753
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..-+ ...++.....+.++|..+++...
T Consensus 261 --~~G~-~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 261 --CVGN-VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred --ccCC-HHHHHHHHHHHhcCCeEEEEecC
Confidence 2222 23778888888889999887543
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.6 Score=39.82 Aligned_cols=95 Identities=19% Similarity=0.074 Sum_probs=62.3
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++. .... +.....|+.+ + ....+.+|+|+-..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~-Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL-GFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence 47889998884 5778888888885 77899999999888888763 2111 1111111110 0 11234589888432
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...+....+.|+++|+++...
T Consensus 220 g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 G-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C-------HHHHHHHHHhhccCCEEEEEc
Confidence 1 145788899999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.48 Score=44.54 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=40.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIE 166 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~ 166 (340)
...|||||+|||.++...++. .+-.|++++.-..|.+.|++... .++|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred eEEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 356999999999999988887 35679999999999999987632 24455544
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.36 Score=43.53 Aligned_cols=56 Identities=29% Similarity=0.337 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCC--CCCCCCccEEEecCccc------c----cC------CHHHHHHHHHHhcccCcEEEEEc
Q 019479 160 KECTIIEGDAEDL--PFPTDYADRYVSAGSIE------Y----WP------DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 160 ~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~------~----~~------d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+.+++++|..+. .+++++||+|++.--.. . +. -....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4456788888653 35678899999843221 0 00 01368899999999999998864
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.4 Score=37.37 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCCEEEEEcCccchHHHHHHH---hC--CCceEEEEeCCH--------------------------HHHHHHHHhCC---
Q 019479 113 RNMRVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEP--- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~---~~--~~~~v~g~D~s~--------------------------~~~~~a~~~~~--- 158 (340)
-+..|+|+||-.|..+..++. .+ ++.+++++|.=+ ...+..+++..
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 356899999999987765543 22 346788888521 12344444432
Q ss_pred --CCCcEEEEcCCCC-CC-CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 159 --LKECTIIEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 159 --~~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+++.++.|.+.+ +| .+..++-++.+-.=++ .....+|..++..|.|||.+++-+...
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3579999999854 44 2233333333221111 122478999999999999998887665
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.9 Score=39.44 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++. ....+ ..... +..+ . ....+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-GFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 57889998884 5788888888885 67899999999888888653 22111 11110 1111 0 1123458988843
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. . ..+....++|+++|+++...
T Consensus 215 ~G-----~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 VG-----G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CC-----H--HHHHHHHHHhCcCcEEEEec
Confidence 21 1 24578899999999998765
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=89.21 E-value=2 Score=39.46 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
+++.+||..|+| .|..+..+++..+...+++++.++...+.+++.....-+.....++.+ + ....+.+|+++-...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 467888888875 477778888876324788998888877777653211001111111100 0 012356898885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
- ...+.+..+.|+++|+++...
T Consensus 246 ~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 F------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C------HHHHHHHHHHhhcCCEEEEEc
Confidence 1 247788899999999988664
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.09 E-value=2 Score=39.76 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-C-CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~v~~~~~ 187 (340)
+++.+||-.|+| .|..+..+++..+...++++|.+++..+.+++.-...-+.....+..+ . . .....+|+|+-...
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 468899998876 466777778776334699999999888888753211001111111100 0 1 12345898885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+.++.+.|+++|+++....
T Consensus 245 ------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 245 ------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEecc
Confidence 12467889999999999987653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.02 E-value=2.2 Score=39.06 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
.++.+||..|+|. |..+..+++.. +.+|+++..+++..+.+++.....-+.....++.+ + ......+|+++....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 4678999998864 77788888875 78899998888888887654211101111111100 1 013345899986421
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+.++.+.|+++|+++...
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346788899999999988764
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.7 Score=40.66 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE--cCCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE--GDAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~--~d~~~-~-~~~~~~fD~v~~~~ 186 (340)
+++.+||-.|+| .|..+..+++..+..+|+++|.+++..+.+++.-...-+.... .++.+ + ....+.+|+|+-..
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 578899999986 4667777888763337999999999999987642211011110 01100 0 01123588887532
Q ss_pred cccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
. . ...+.++.+.+++| |++++...
T Consensus 264 G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 264 G-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred C-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 2 1 34677888899886 99887754
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=14 Score=31.66 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
++++||-.|++. ..+..+++.+ .+.+|++++.+++..+...+.. ...++.++.+|+.+.. + .-+..
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999853 3333333322 3789999999887665553321 2235788888886522 0 01346
Q ss_pred cEEEecCcccccC---CH--------------HHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWP---DP--------------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~---d~--------------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|.++.+....... +. ...++.+.+.++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8777655432111 11 1235566667778888877653
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.87 E-value=5.4 Score=36.32 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL----PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~ 185 (340)
.++.+||.+|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-... ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 467899999876 366777777775 555 8999999988888865321 1 1221111110 1133568999864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ....+.++.+.|+++|+++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1356788899999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.64 E-value=3.3 Score=38.49 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+.+......+ +...+...+......+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g--- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADDY-LVSSDAAEMQEAADSLDYIIDTVP--- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcEE-ecCCChHHHHHhcCCCcEEEECCC---
Confidence 467888888775 566777778875 67888888888766665544332111 111111111001124788874321
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|++||+++....
T Consensus 254 ---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---chHHHHHHHHHhccCCEEEEECC
Confidence 12467788899999999988754
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.38 E-value=6.8 Score=37.09 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc---CCCC-CC--CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG---DAED-LP--FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~---d~~~-~~--~~~~~fD~v~~ 184 (340)
.++.+||-.|+| .|..+..+++......++.+|.++.-.+.+++.-. . .+... ++.+ +. .....+|+|+-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-E--TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-e--EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 467888888886 46667777777643446677998888888887422 1 12111 1111 10 12235898885
Q ss_pred cCcccc--------cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEY--------WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~--------~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...... -.+....++++.+.+++||++++...
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 433210 01223578999999999999998764
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.10 E-value=2.8 Score=31.96 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCEEEEEcCccchH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~ 191 (340)
..+|+|+|-|.=.. +..++++ ++.++++|+.+. .+ . ..++++..|+.+.... -...|+|++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a----~-~g~~~v~DDitnP~~~iY~~A~lIYS------i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TA----P-EGLRFVVDDITNPNISIYEGADLIYS------I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cC----c-ccceEEEccCCCccHHHhhCccceee------c
Confidence 45999999986543 4555555 799999999775 22 2 6789999999873311 133688875 3
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEE
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVI 214 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~ 214 (340)
..+.++.+.+.++-+. |..+++.
T Consensus 78 RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 3344444444444433 3455554
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.95 E-value=2.3 Score=39.67 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCC-cEEEEc--CCCC-C-CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKE-CTIIEG--DAED-L-PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~--d~~~-~-~~~~~~fD~v~~ 184 (340)
+++.+||-+|+| .|..+..+++.. +. .|+++|.+++..+.+++.-. .. +..... ++.+ . ....+.+|+|+-
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGA-TDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCC-CEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 578899999875 456677777775 55 79999999999988875321 11 111111 1100 0 012236898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
... ....+....+.|+++ |++++...
T Consensus 263 ~~g------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 263 CIG------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCC------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 321 124678888899997 99987754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=6.2 Score=39.71 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
.+|+=+|+| .++..+++.. .+.+++.+|.+++.++.+++ .+..++.+|..+.. ..-+..|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vv~~--- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----YGYKVYYGDATQLELLRAAGAEKAEAIVIT--- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCCeEEEeeCCCHHHHHhcCCccCCEEEEE---
Confidence 467666665 4444444322 36799999999999998875 35678999997632 233467887763
Q ss_pred cccCCHHH--HHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQR--GIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~--~l~~~~~~LkpgG~l~i~~ 215 (340)
.+|.+. .+-...|.+.|..+++...
T Consensus 472 --~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 472 --CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred --eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 334432 3334455677888877654
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.86 E-value=4.4 Score=36.80 Aligned_cols=97 Identities=22% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC------CCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED------LPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~------~~~~~~~fD~v~~ 184 (340)
.++.+|.-+|+|. |.....-++..+..+++|+|++++-.+.|++.-.-+-++.. |..+ ....++.+|+-+-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysfE 268 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK--DLKKPIQEVIIEMTDGGVDYSFE 268 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh--hccccHHHHHHHHhcCCceEEEE
Confidence 5788999999985 55555556665668999999999999999975322111111 3332 0134566776552
Q ss_pred cCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
++. ....++++....+.| |.-+++..
T Consensus 269 --c~G----~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 269 --CIG----NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred --ecC----CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 222 235778888888899 88877653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.64 E-value=2.1 Score=39.96 Aligned_cols=104 Identities=20% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCCCCCC--------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIEGDAEDLP-------------- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~~~~~-------------- 173 (340)
.+.++||.+|+.+.....+++.++-.+-.|+++..+.+..+..+... .+..+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46789999999999999999998777888899989888888754221 22344444432211
Q ss_pred ---------------CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 174 ---------------FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 174 ---------------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
++...+|. ..+.-|+++...++......++|+|.+.+.+....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11223333 45556677777788999999999999998865443
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=87.50 E-value=1.2 Score=39.45 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCC-----C
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLP-----F 174 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~-----~ 174 (340)
..+.++..++|+|||.|.++..++... +...++.||-...-. ++..+... ..+.=+..|+.++. .
T Consensus 14 ~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~ 92 (259)
T PF05206_consen 14 GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKLPE 92 (259)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhccc
Confidence 334577899999999999999999987 457899999844222 22222111 23444556665543 2
Q ss_pred -C-CCCccEEEecCcccccCCHHHHHHHHHHhcc-------cCcEEEEE
Q 019479 175 -P-TDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-------IGGKACVI 214 (340)
Q Consensus 175 -~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-------pgG~l~i~ 214 (340)
. +..-=++++.+....-.| -+|+-+.+..+ ..|.++..
T Consensus 93 ~~~~~~~vv~isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~ 139 (259)
T PF05206_consen 93 LQNDEKPVVAISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAP 139 (259)
T ss_pred ccCCCCcEEEEEccccccchh--HHHHhhccCccccccCCccCeEEEEe
Confidence 1 111124555555544344 45666665554 45665544
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.49 E-value=3.7 Score=37.77 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCc-EEEEcCC----CCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKEC-TIIEGDA----EDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~----~~~--~~~~~~fD~v 182 (340)
.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++. ....+ .....+. ..+ ......+|+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-GATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 5788888888765 77778888875 555 89999888888877653 21111 1111111 000 1233458999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+-...- ...+.+..+.|+++|+++...
T Consensus 239 ld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 239 IECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 864321 236788899999999988764
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.48 E-value=5.2 Score=37.99 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. ....+ .+.++. -...|+|+....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----~G~~v--~~leea---l~~aDVVItaTG--- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----DGFRV--MTMEEA---AKIGDIFITATG--- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----cCCEe--CCHHHH---HhcCCEEEECCC---
Confidence 4789999999995 55555566654 6899999998865544442 12222 222221 134699886432
Q ss_pred cCCHHHHHH-HHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIK-EAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~-~~~~~LkpgG~l~i~~~~ 217 (340)
...++. +....+|+|++++.....
T Consensus 260 ---~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 ---NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 234454 588899999998877543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.42 E-value=3.2 Score=37.95 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=59.7
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~-~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|+-+|+|. |......+......+|+.+|.+++-. +.+++ ... .... ..++...-..+|+|+....-.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~---~~~~--~~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG---NAVP--LDELLELLNEADVVISATGAPH 250 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC---eEEe--HHHHHHHHhcCCEEEECCCCCc
Confidence 688999999973 44433333333346899999998654 44443 221 2221 1111111234799998765443
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
. ...+..+.+..+.++.++ .+...|.........-.....++.+++.+..++
T Consensus 251 ~---~~~~~~~~~~~~~~~~~v-iDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 251 Y---AKIVERAMKKRSGKPRLI-VDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred h---HHHHHHHHhhCCCCCeEE-EEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 3 333444433332234544 444333211111111001123466676666553
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.42 E-value=3.4 Score=37.95 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++......+ ..... ++.+ + ....+.+|+|+-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 57899999986 5778888888885 77899999999888888763332221 11111 2111 0 1112468988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ...+.++.+.|+++|+++...
T Consensus 229 ~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 VG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-------HHHHHHHHHHhccCcEEEEec
Confidence 21 146788899999999998764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=6.1 Score=34.62 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=47.2
Q ss_pred CEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CC------CCCcc
Q 019479 115 MRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FP------TDYAD 180 (340)
Q Consensus 115 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~------~~~fD 180 (340)
+++|-.|++.|. ++..++++ +.+|++++.++..++...+.....++.++.+|+.+.. +. .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 467777765432 23334443 7899999998887776655443456888899996532 00 34689
Q ss_pred EEEecCccc
Q 019479 181 RYVSAGSIE 189 (340)
Q Consensus 181 ~v~~~~~l~ 189 (340)
+|+.+....
T Consensus 80 ~vi~~ag~~ 88 (260)
T PRK08267 80 VLFNNAGIL 88 (260)
T ss_pred EEEECCCCC
Confidence 998776543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.13 E-value=6.3 Score=36.23 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=78.2
Q ss_pred CCEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C--------CCcEEEEcCCCCCCCC
Q 019479 114 NMRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L--------KECTIIEGDAEDLPFP 175 (340)
Q Consensus 114 ~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~--------~~i~~~~~d~~~~~~~ 175 (340)
-.+|--||+|+ ..++..++.. |.+|+..|.+++.++.++++.. . .++++. .|+++ .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence 36788999984 3455566655 8999999999988776654211 0 112211 12211 1
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------------hHhhhHhhc---------C
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------------RFFADVWML---------F 234 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------------~~~~~~~~~---------~ 234 (340)
-...|+|+-+ +.+..+-...+++++.+.++|+..|.-+.......... .++++.+.. .
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~ 159 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGER 159 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence 1346888753 44444444588899999999987444333222211111 111111110 1
Q ss_pred C---CHHHHHHHHHHCCCcEEEEE-EeC
Q 019479 235 P---KEEEYIEWFQKAGFKDVKLK-RIG 258 (340)
Q Consensus 235 ~---~~~~~~~~l~~aGF~~v~~~-~~~ 258 (340)
. +.+...+++++.|.+.+.+. +..
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~p 187 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVP 187 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCc
Confidence 1 23566788999999988884 443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.12 E-value=7.4 Score=36.64 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=48.3
Q ss_pred CEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecC
Q 019479 115 MRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAG 186 (340)
Q Consensus 115 ~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~ 186 (340)
++||-|||| -|......+.+....+|+..|.|.+.++.+..... .+++..+.|+.+.+- .-..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 579999996 34444333333234899999999999988876543 378899999977431 113459988643
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.98 E-value=6.3 Score=35.69 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. ... .. .+.... .....+|+++-...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~---~~-~~~~~~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-GVE---TV-LPDEAE-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCc---EE-eCcccc-ccCCCCCEEEECCC---
Confidence 467889888764 345555566664 67899999999999888863 211 11 111111 23456999886421
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|++++..
T Consensus 224 ---~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ---SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---ChHHHHHHHHHhhcCCEEEEEc
Confidence 1346778888999999998743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.91 E-value=3.4 Score=38.50 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCC--CC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDA--ED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~--~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-+|+| .|..+..+++..+..+|+++|.++...+.+++... ..+ .....+. .+ + ......+|+|+-.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga-~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA-TDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-CcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 578899999885 45666777777633379999999998888865321 111 1111000 00 0 0122458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
.. . ...+....+.|+++ |++++...
T Consensus 262 ~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 262 TG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 21 1 24678888899886 99987754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=86.90 E-value=8.2 Score=38.42 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=55.7
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
.+|+=+|||. ++..+++.. .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-+.+|.+++.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~--- 488 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDCARWLLLT--- 488 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccccCEEEEE---
Confidence 5677777764 444444432 26789999999999998875 35788999997632 233467876652
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
.+|.+ ..+-.+.+...|..+++..
T Consensus 489 --~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 489 --IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred --cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 22322 2233445556777766654
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=86.80 E-value=8.3 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred CEEEEEcC--ccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCC-C-CCCCCCccEEEecCcc
Q 019479 115 MRVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAED-L-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGc--G~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~-~-~~~~~~fD~v~~~~~l 188 (340)
.+||-.|+ |.|..+..+++.. +. +|++++.+++..+.+++......+ .....++.+ + ......+|+|+-...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g- 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG- 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC-
Confidence 78998885 5788888888886 65 899999999888887764332221 111111111 0 112246898885322
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ..+.++.+.|+++|+++...
T Consensus 234 ----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 234 ----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ----c--HHHHHHHHHhccCCEEEEEe
Confidence 1 23578889999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.45 E-value=3.3 Score=38.22 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-C-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-P-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++.. +. +|++++.+++..+.+++.....-+.....++.+ + . ...+.+|+|+-..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 467888888864 456666777775 55 899999999888888653211001111111100 0 0 1223489998542
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ....++.+.+.|+++|+++....
T Consensus 250 g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C------CHHHHHHHHHhccCCCEEEEEcc
Confidence 2 12367888999999999988754
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.43 E-value=4 Score=39.38 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=62.4
Q ss_pred HHHhccccCCCCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
.+.++......-.+++|+-+|+|. |......++.+ +.+|+++|.++.....+... ...+. +.++. -...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa---l~~A 310 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV---VSEA 310 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH---HhhC
Confidence 444444444434789999999994 55555555555 67999999988654444421 22221 22221 1347
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|+....-. ..+..+..+.||+|+.|+....
T Consensus 311 DVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 311 DIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 9998733222 2234778889999999988754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.15 E-value=3.5 Score=34.43 Aligned_cols=132 Identities=19% Similarity=0.149 Sum_probs=73.9
Q ss_pred EEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------------------CCcEEEEcCCCCCC
Q 019479 116 RVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECTIIEGDAEDLP 173 (340)
Q Consensus 116 ~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------------------~~i~~~~~d~~~~~ 173 (340)
+|.-||+|+=. ++..++.. |.+|+.+|.+++.++.++++... .+++ ...|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 46678988532 44444444 89999999999998887754210 1233 34555443
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc--------
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML-------- 233 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~-------- 233 (340)
. ..|+|+=. +.+.++-..++++++.+.+.|+-.|.-.....+...+.. ++.+.+..
T Consensus 77 --~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 77 --V-DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp --C-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred --h-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCC
Confidence 2 47888743 344444446899999999999888877654443221111 11111100
Q ss_pred CC----CHHHHHHHHHHCCCcEEEEE
Q 019479 234 FP----KEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 234 ~~----~~~~~~~~l~~aGF~~v~~~ 255 (340)
.. +.+...+++++.|...+.+.
T Consensus 153 ~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 153 PKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 11 24667788899999887764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.12 E-value=5.7 Score=33.32 Aligned_cols=89 Identities=20% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..+.+||-+|.= +|.+...++.. ..+|+.+|+.|.+-...+ ++++|... +.+..+.+|+|+--..+.-
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp-----~~v~Fr~~----~~~~~G~~DlivDlTGlGG 111 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP-----NNVKFRNL----LKFIRGEVDLIVDLTGLGG 111 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC-----CCccHhhh----cCCCCCceeEEEeccccCC
Confidence 367899999984 88888777766 689999999987765554 66776554 3345677999998777776
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+. | +..+-+.| +.+++.++..
T Consensus 112 ~~-P-----e~L~~fnp-~vfiVEdP~g 132 (254)
T COG4017 112 IE-P-----EFLAKFNP-KVFIVEDPKG 132 (254)
T ss_pred CC-H-----HHHhccCC-ceEEEECCCC
Confidence 63 2 23334455 5566666543
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=8.8 Score=33.75 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~fD 180 (340)
.++++|-.|++.| .+..+++.+ .+.+|+.+|.++...+...+... .++.++.+|+.+.. + .-+..|
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASLG-ERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-CeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4578888886543 333333332 27899999998875555444332 45778888986532 0 014579
Q ss_pred EEEecCcc
Q 019479 181 RYVSAGSI 188 (340)
Q Consensus 181 ~v~~~~~l 188 (340)
+++.+...
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 88876543
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.78 E-value=2.7 Score=34.36 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=64.6
Q ss_pred EEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|. .+..+++.+ .+.+|++.|.+++..+...+. ++. ...+..+. ....|+|++. +++
T Consensus 3 ~Ig~IGlG~--mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g~~-~~~s~~e~---~~~~dvvi~~-----v~~ 67 (163)
T PF03446_consen 3 KIGFIGLGN--MGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----GAE-VADSPAEA---AEQADVVILC-----VPD 67 (163)
T ss_dssp EEEEE--SH--HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----TEE-EESSHHHH---HHHBSEEEE------SSS
T ss_pred EEEEEchHH--HHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----hhh-hhhhhhhH---hhcccceEee-----ccc
Confidence 455677763 333333332 378999999999888777653 222 33333332 1235888873 445
Q ss_pred HH---HHHHH--HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 194 PQ---RGIKE--AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 194 ~~---~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. .++.. +...|++|..++-.....+. +..++.+.+++.|...++.--.+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~---------------~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPE---------------TSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH---------------HHHHHHHHHHHTTEEEEEEEEES
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchh---------------hhhhhhhhhhhccceeeeeeeec
Confidence 43 55666 77777776666544433322 35677788999998877776654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.9 Score=39.18 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred CCCCEEEEEcC-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCCC----CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAEDL----PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGc-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~~----~~~~~~fD~v~~ 184 (340)
.++++|--+|. |-|.++..++++. +.+|+++|-+..--+.+-+.+..+. |+.. |-... ...+.-.|-|..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~--fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADV--FVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcce--eEEecCCHHHHHHHHHhhcCcceeeee
Confidence 37777777775 4899999999997 8999999999866666666554332 2211 11111 112233344432
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. ....+..+.+.||++|.++++...
T Consensus 257 ~--------a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 257 L--------AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred c--------cccchHHHHHHhhcCCEEEEEeCc
Confidence 1 123467788999999999988643
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.57 E-value=3.5 Score=38.46 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++..+..+|+++|.+++..+.+++.-...-+..... ++.+ + ....+.+|+|+-..
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 478899999875 45667777777633389999999999998875321100111110 0100 0 01223588887432
Q ss_pred cccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
. ....+....+.+++| |++++...
T Consensus 266 G------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 266 G------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred C------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 1 134677788899996 99988754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=85.52 E-value=16 Score=36.94 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
..+|+=+|||. |......++. .+.+++.+|.+++.++.+++ .+..++.+|..+.. ..-+..|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vvv~--- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAAKAEVLINA--- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE---
Confidence 46788888874 4433333333 26789999999999999875 35678999997642 233467888763
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+|.+ ..+-...+.+.|.-.++...
T Consensus 472 --~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 --IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred --eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 34443 23334455566776665543
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.9 Score=37.10 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=62.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC---CCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP---TDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~~ 186 (340)
.++.|+-+| -.-..++.++-..-..++..+|+++..++...+. ....|++.+..|+.+ |++ ...||+++. .
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiT-D 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFIT-D 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeec-C
Confidence 678899999 3334444444332246899999999888776644 556778889999965 333 357998774 2
Q ss_pred cccccCCHHHHHHHHHHhcccC---cEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG---GKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg---G~l~i~~ 215 (340)
--+.++....++.+=...||.- |++.++-
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 2222222234555555666655 6666653
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=85.28 E-value=4.7 Score=36.95 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcC---CCCC-C-CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGD---AEDL-P-FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d---~~~~-~-~~~~~fD~v~~ 184 (340)
.++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++... . .++..+ ...+ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 4678899998765 77777778775 555 9999998888887754321 1 111111 1110 1 12234899985
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. .....+..+.+.|+++|+++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346788899999999988775
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.27 E-value=3.8 Score=38.49 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHH-HHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++.. +.+|+++|.+++. .+.+++. .... ++. .+...+....+.+|+|+-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l-Ga~~--~i~~~~~~~v~~~~~~~D~vid~~G- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL-GADS--FLVTTDSQKMKEAVGTMDFIIDTVS- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC-CCcE--EEcCcCHHHHHHhhCCCcEEEECCC-
Confidence 367889988886 466777778876 6789999887654 4555432 2111 111 010011000124788875321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.+++||+++....
T Consensus 252 -----~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 -----AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----cHHHHHHHHHhhcCCCEEEEEcc
Confidence 22367888899999999987753
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=84.95 E-value=15 Score=34.81 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCCCEEEEEc-C-ccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCCCC----CcEEEEcCCC---CC-----CC-
Q 019479 112 DRNMRVVDVG-G-GTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECTIIEGDAE---DL-----PF- 174 (340)
Q Consensus 112 ~~~~~vLDiG-c-G~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~----~i~~~~~d~~---~~-----~~- 174 (340)
+++.+||-+| + +.|..+..+++... ..+|+++|.+++.++.+++..... +......|.. ++ ..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4678899887 3 47888888888742 247999999999999998752110 2221111211 11 01
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+|+|+.... ....+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 2235898886321 135678889999988876554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.52 E-value=0.63 Score=41.65 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=67.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc----EEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----TIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i----~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+..|+|+=+|-|.++..+.=......|+++|.+|..++..++.+...++ ..+.+|-.. +-++...|-|.+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeec---
Confidence 56899999999999998443333567999999999999998877554443 344555443 3356667877754
Q ss_pred cccCCHHHHHHHHHHhcccC-c-EEEEEccC
Q 019479 189 EYWPDPQRGIKEAYRVLKIG-G-KACVIGPV 217 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~Lkpg-G-~l~i~~~~ 217 (340)
-++.-++-.-.+.++|||. | .+-|.+.+
T Consensus 270 -LlPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -cccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 3444455566677888875 4 44444443
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.6 Score=33.96 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCCEEEEEcCccch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 190 (340)
...+|+|||-|.=. .+..+.+. +..|+++|+.+. .++ .++.++..|+.+..+. -...|+|++.. .
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiR---P 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIR---P 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----cCcceeeecccCCCHHHhcCCcEEEEeC---C
Confidence 34599999999754 45555555 799999999886 222 5788999999873311 13478888743 2
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-++.+..+.++++.+ |.-+++....
T Consensus 80 P~El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 80 PPELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred ChHHhHHHHHHHHHh--CCCEEEECCC
Confidence 334455555555543 4666666433
|
; PDB: 2K4M_A. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.33 E-value=7.4 Score=36.06 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCC----CC-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAE----DL-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~----~~-~-~~~~~fD~v 182 (340)
.++.+||-.|+| .|..+..+++.. +. +|++++.+++..+.+++. ....+ .....+.. .+ . .....+|+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF-GADATIDIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence 467888888875 455666777775 56 899999988888777643 21111 11111110 00 0 122458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-... ....+....+.|+++|+++....
T Consensus 254 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC------ChHHHHHHHHHhccCCEEEEEcC
Confidence 85321 12457788899999999987753
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.04 E-value=8.5 Score=39.53 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=84.4
Q ss_pred CCEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------------------CCCcEEEEcCCCC
Q 019479 114 NMRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECTIIEGDAED 171 (340)
Q Consensus 114 ~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------------------~~~i~~~~~d~~~ 171 (340)
-.+|.-||+|+ ..++..++.. .+..|+.+|.+++.++.+.++.. ..++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 46799999997 3344555523 38999999999999888764321 0123322 23221
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc------
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML------ 233 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~------ 233 (340)
-...|+|+=. +.+.++-.+++++++-++++|+..|.-.+...+...+.. ++++.+..
T Consensus 387 ----~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 ----FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred ----hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 1347888743 566565556899999999999988766554433222211 11111110
Q ss_pred ---CC---CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 ---FP---KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 ---~~---~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. +.+...+++++.|...+.+.+..
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 01 24566778899999998886643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=83.97 E-value=12 Score=33.87 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|+-+|.|. |..+...++.. +.+|+++|.++...+.++.. +..+. ++.++...-..+|+|+..-.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~----G~~~~--~~~~l~~~l~~aDiVI~t~p---- 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM----GLSPF--HLSELAEEVGKIDIIFNTIP---- 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----CCeee--cHHHHHHHhCCCCEEEECCC----
Confidence 688999999984 44444455554 67999999998877666542 22222 12222111245899997421
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+-++..+.++||+.++-..
T Consensus 220 --~~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 220 --ALVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred --hhhhhHHHHHcCCCCcEEEEEc
Confidence 1123356677889988776543
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.82 E-value=5.1 Score=36.69 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++.. +.+++.++.+++..+.+++... .. +.....+... +. ....+|+++....
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~-~~~~~d~vi~~~g- 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-HHYIDTSKEDVAEALQ-ELGGAKLILATAP- 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-cEEecCCCccHHHHHH-hcCCCCEEEECCC-
Confidence 467899999875 456667777775 6789999999888888865321 11 1111111110 00 0134788885211
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|+++|+++....
T Consensus 238 -----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 -----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -----chHHHHHHHHHcccCCEEEEEec
Confidence 13467888999999999987653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.72 E-value=7.5 Score=34.24 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC------------ceEEEEeCCHHHHHHHHHh-------------C----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA------------KNVTILDQSPHQLAKAKQK-------------E---------- 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~------------~~v~g~D~s~~~~~~a~~~-------------~---------- 157 (340)
....|+|+|-|+|.....+.+.++. ..++.++..|.....+... .
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 5568999999999987776554422 3466777665332222111 0
Q ss_pred ------CCCCcEEEEcCCCC-CCCCCC---CccEEEecCcccccCCHH----HHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 158 ------PLKECTIIEGDAED-LPFPTD---YADRYVSAGSIEYWPDPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 158 ------~~~~i~~~~~d~~~-~~~~~~---~fD~v~~~~~l~~~~d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
...+.....+|+.+ +|..+. .+|+.+.. ++.-..||+ .++..+++..+|||.+.--
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~--------- 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVKNPEMWEDELLNLMARIPYRDPTLATF--------- 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecC-CccccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence 01234567788844 343333 68988864 344555663 7899999999999998321
Q ss_pred hhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 224 SRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
-..--.+.-|+++||++.+....+
T Consensus 208 -----------ssA~~vRr~L~~aGF~v~~r~g~g 231 (252)
T COG4121 208 -----------AAAIAVRRRLEQAGFTVEKRTGRG 231 (252)
T ss_pred -----------HHHHHHHHHHHHcCceeeecCCcc
Confidence 123345678999999988775443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=83.66 E-value=2.2 Score=33.76 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=45.3
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+||-+|+| .|......+...+..+++.+.-+.+-.+...+.....++++. +++++...-..+|+|+......+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAI--PLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEE--EGGGHCHHHHTESEEEE-SSTTST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccccee--eHHHHHHHHhhCCeEEEecCCCCc
Confidence 68899999996 343333333333345699999987655554444433344444 333333223469999987766544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=45 Score=32.39 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCC-----------------
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFP----------------- 175 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~----------------- 175 (340)
..+++|+=||.|.+..-+-.. +.-.|.++|+++.+.+.-+.+.. .+......+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhcc
Confidence 569999999999999998765 33456789999999888887652 23334455666554311
Q ss_pred CCCccEEEecCcccccC------------------CHH-HHHHHHHHhc---ccCcEEEEEccCCCchhHhhHhhhHhhc
Q 019479 176 TDYADRYVSAGSIEYWP------------------DPQ-RGIKEAYRVL---KIGGKACVIGPVYPTFWLSRFFADVWML 233 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~------------------d~~-~~l~~~~~~L---kpgG~l~i~~~~~~~~~~~~~~~~~~~~ 233 (340)
.+.+|+++...-...+. |.. .++.++.|++ +|. +++.+.+..-.. ...
T Consensus 167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--------~~~ 236 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--------HDK 236 (467)
T ss_pred CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--------ccc
Confidence 12478888643333221 222 2334444443 443 445544322100 000
Q ss_pred CCCHHHHHHHHHHCCCcEEE
Q 019479 234 FPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 234 ~~~~~~~~~~l~~aGF~~v~ 253 (340)
-.+.+.+.+.|++.||.+..
T Consensus 237 g~~f~~i~~~L~~lGY~v~~ 256 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVAD 256 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEe
Confidence 11356778889999999753
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.30 E-value=8 Score=35.47 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC---CCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDA---EDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~---~~~~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+|. |..+..+++.. +. +|++++-+++-.+.+++.....-+.....++ .++ ...+.+|+|+..-
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 4677888877753 66777788876 55 7888888887777766532110011111111 111 1234689998532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ....+.++.+.|+++|+++...
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 G------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred C------CHHHHHHHHHHhccCCEEEEEc
Confidence 1 1245778889999999998764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.17 E-value=16 Score=35.19 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++|+-+|-| +|.-+..++.+. +.+|++.|.++.......+....+++.+..+.-.. +....+|+|+.+-.+-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEECCCCCC
Confidence 7899999987 676666665553 79999999888773233333334677887776544 23456899998876653
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=83.06 E-value=3.2 Score=34.65 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCCCC---------CCCCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAEDLP---------FPTDY 178 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~~~---------~~~~~ 178 (340)
...|+.+|||--.....+....++.+++-+|. |++++.-++.... .+.+++..|+.+.. +..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44899999999888888877656789999999 7777666654321 23568999997521 22333
Q ss_pred ccEEEecCcccccCCH
Q 019479 179 ADRYVSAGSIEYWPDP 194 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~ 194 (340)
--++++-.++.+++..
T Consensus 158 ptl~i~Egvl~Yl~~~ 173 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPE 173 (183)
T ss_dssp EEEEEEESSGGGS-HH
T ss_pred CeEEEEcchhhcCCHH
Confidence 4577778888888543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.75 E-value=22 Score=28.24 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=40.2
Q ss_pred CCCEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+.+|+-+|||. | ..+..+++. +..+++.+|.+++..+...+......+.....|..+. .+.+|+|++.-....
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEADLIINTTPVGM 93 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCCEEEeCcCCCC
Confidence 568999999963 2 222333332 2368999999887666544332211111222232221 355899998655443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=8 Score=35.37 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++. .+...++++|.+++..+.+++.....-+.....++.+ +.-....+|+|+-...
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g- 237 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC- 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC-
Confidence 468899999965 34455566664 3334688899999888888764221101111111111 1101112456664221
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ...+.+..+.|+++|+++....
T Consensus 238 ----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999988754
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=15 Score=35.06 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=54.6
Q ss_pred CEEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcE-----E-EEcCCCCCCCCCCCccEEE
Q 019479 115 MRVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECT-----I-IEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 115 ~~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~-----~-~~~d~~~~~~~~~~fD~v~ 183 (340)
.+|.-||.|.-. .+..+++. +.+|+++|.+++.++..++... .+.+. . ..+.+.... .....|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEE
Confidence 468888888543 34445554 7899999999998886542110 00000 0 000000000 112468887
Q ss_pred ecCccc-------ccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 184 SAGSIE-------YWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 184 ~~~~l~-------~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+-.-- ++.....+++.+.+.+++|-.+++.....+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 643221 111223567888888988776666554443
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=82.36 E-value=8.6 Score=35.28 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
.++.+||-.|+| .|..+..+++..+..+++++|.++...+.+++.....-+.....+... + ......+|+|+-..
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV- 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC-
Confidence 467787777764 345566677776437899999988887777653211101111111100 0 01234589888532
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ...+..+.+.|+++|+++...
T Consensus 244 ----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 ----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 235788889999999998764
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.21 E-value=6.7 Score=36.51 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC----C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED----L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++..+-.+ + ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 4678898888753 6777778887643379999999988887765321 1 111111111 0 0113458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..- ...+..+.+.|+++|+++....
T Consensus 262 ~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 211 2357888999999999987754
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.05 E-value=12 Score=35.72 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
-.+++|+-+|+|. |......++.+ +.+|+.+|.++.....+... ..++ .++++. -..+|+|+....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v--~~l~ea---l~~aDVVI~aTG--- 276 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRV--MTMEEA---AELGDIFVTATG--- 276 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEe--cCHHHH---HhCCCEEEECCC---
Confidence 3789999999985 44444445554 67999999988665544421 2222 222221 135899987431
Q ss_pred cCCHHHHHH-HHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIK-EAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~-~~~~~LkpgG~l~i~~~~ 217 (340)
. ..++. +..+.+|+|+.++.....
T Consensus 277 --~-~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 277 --N-KDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred --C-HHHHHHHHHhcCCCCCEEEEcCCC
Confidence 2 23454 688899999988777543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=12 Score=32.11 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC-----CC-----CCCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP-----FP-----TDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~-----~~-----~~~f 179 (340)
.+.+||-+|+ +|..+..+++.+ .+.+|++++.++...+...+... ..++.++.+|+.+.. +. -+.+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3578888885 555555544432 26789999988866554443321 145778888886521 00 1358
Q ss_pred cEEEecCcc
Q 019479 180 DRYVSAGSI 188 (340)
Q Consensus 180 D~v~~~~~l 188 (340)
|+|+.+...
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 988876543
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.35 E-value=15 Score=37.55 Aligned_cols=102 Identities=19% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCEEEEEcCccc--hH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCC-----C-----CCCC
Q 019479 113 RNMRVVDVGGGTG--FT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLP-----F-----PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G--~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~-----~-----~~~~ 178 (340)
.+++||-.|++.| .. +..++++ +.+|+++|.++...+.+.+.... .++.++..|+.+.. + ..+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578888886433 32 2333333 67999999998777665544221 46778888886522 1 1236
Q ss_pred ccEEEecCcccccCC-------------------HHHHHHHHHHhccc---CcEEEEEcc
Q 019479 179 ADRYVSAGSIEYWPD-------------------PQRGIKEAYRVLKI---GGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~~~~d-------------------~~~~l~~~~~~Lkp---gG~l~i~~~ 216 (340)
+|+|+.+........ ...+++.+.+.+++ ||.+++...
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 899988765432211 12445666777766 688877654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.22 E-value=24 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q 019479 116 RVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 116 ~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~ 156 (340)
+|--||.| -|.-...+... +.+|+++|.+++.++...+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcC
Confidence 46667877 34332233333 68999999999999888763
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=27 Score=34.80 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC--------C---CCCcEEEEcCCCCCC-C--C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--------P---LKECTIIEGDAEDLP-F--P 175 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~--------~---~~~i~~~~~d~~~~~-~--~ 175 (340)
+.+++||-.|+ +|..+..+++++ .+.+|++++.+....+...+.. . ..++.++.+|+.+.. + .
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 36777887776 344444444332 3789999998877654433211 0 135788999997632 1 1
Q ss_pred CCCccEEEecCcc
Q 019479 176 TDYADRYVSAGSI 188 (340)
Q Consensus 176 ~~~fD~v~~~~~l 188 (340)
-+..|+||++...
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 2457998876443
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=80.60 E-value=5.7 Score=39.08 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|+-||+|. |......+...+..+|+.++.+++..+...+... ++.....++.+....-...|+|++...-.+.
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 478999999963 3333222223223479999999877666554432 2222222222222122458999986543322
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEEccCCC
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVIGPVYP 219 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~~~~~~ 219 (340)
--....++++...-+. +..+++++...|
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 1122344444322111 233556554433
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=80.41 E-value=17 Score=34.16 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEc---CCCC-C-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEG---DAED-L-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~---d~~~-~-~-~~~~~fD~v 182 (340)
+++.+||-.|+| .|..+..+++.. +. .|++++.+++..+.+++... ..+ ..... +..+ + . .....+|+|
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~v~~~~~g~gvDvv 279 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGA-DYVFNPTKMRDCLSGEKVMEVTKGWGADIQ 279 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-CEEEcccccccccHHHHHHHhcCCCCCCEE
Confidence 467888888875 355566677775 45 79999998887777665321 111 11110 1100 0 0 123458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+... .+....+..+.+.|+++|+++....
T Consensus 280 ld~~-----g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 280 VEAA-----GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EECC-----CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 8542 2334567888999999999987753
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.31 E-value=16 Score=33.19 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.||| .|..+..+++.. +.+++.++.+++..+.+++. . ++... +.... ..+.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~-g---~~~~~-~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL-G---ADWAG-DSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh-C---CcEEe-ccCcc--CCCcccEEEEcCC---
Confidence 467788888775 344555566664 68999999988888887542 2 11111 11111 2345888875321
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|+++...
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999998765
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=80.26 E-value=4.3 Score=36.57 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.+.||+|+......|.-.+. +.++++|+|.|++...-.-...-..-... -.+.+.++++++||+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 35699999876655543333 77789999999887531110000000000 146788999999998653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 340 | ||||
| 3dlc_A | 219 | Crystal Structure Of A Putative S-Adenosyl-L-Methio | 7e-07 | ||
| 1vlm_A | 219 | Crystal Structure Of Sam-Dependent Methyltransferas | 1e-05 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 3e-04 |
| >pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase, Possible Histamine N-Methyltransferase (Tm1293) From Thermotoga Maritima At 2.20 A Resolution Length = 219 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-37
Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 24/217 (11%)
Query: 70 IQHKKEAFW--FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFT 127
+ K+ F + + + + P + + + + + +D+G G G
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY--PIIAENIINRFGI--TAGTCIDIGSGPGAL 57
Query: 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLPFPTDYADRYV 183
++ + K D + LD S H A + I++GD ++P +YAD V
Sbjct: 58 SIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIV 116
Query: 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW------------ 231
S GS+ +W D +E YR+LK GGK + G A++
Sbjct: 117 SRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRK 176
Query: 232 -MLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRR 267
+ E + + G ++ ++ + +
Sbjct: 177 NISQENVERFQNVLDEIGISSYEIILGDEGFWIIISK 213
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-36
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 13/160 (8%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDA 169
N V+DV G G V K V D + L A+ ++ ++GDA
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
E +PF + + ++P+P + EAYRVLK GG+ ++ P F +
Sbjct: 95 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154
Query: 230 VWML--------FPKEEEYIEWFQKAGFKDVKLKRIGPKW 261
K+ ++++ ++AGF+ +L +
Sbjct: 155 YVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTF 194
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 7e-36
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 20/193 (10%)
Query: 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLG 130
H + + Y+ + +A++ R V++G GTG +
Sbjct: 8 HHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVKC---LLPEGRGVEIGVGTGRFAV- 63
Query: 131 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190
K ++ S A+++ +++G AE+LP + D + +I +
Sbjct: 64 -----PLKIKIGVEPSERMAEIARKRG----VFVLKGTAENLPLKDESFDFALMVTTICF 114
Query: 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW-------MLFPKEEEYIEW 243
DP+R +KEAYR+LK GG V +F + + F EE ++
Sbjct: 115 VDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDL 174
Query: 244 FQKAGFKDVKLKR 256
+KAGF++ K+ +
Sbjct: 175 MRKAGFEEFKVVQ 187
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-34
Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 9/206 (4%)
Query: 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTL 129
+ A + + ++ + W R + + + + V+DVG G G+ T
Sbjct: 11 NWHESAEKKWDSSAEFWNQN-SQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTY 69
Query: 130 GIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189
+ + +D S + K K++ + + I+GD LPF + + ++ S+E
Sbjct: 70 KLSRTG--YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127
Query: 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-----WLSRFFADVWMLFPKEEEYIEWF 244
+ +P R + E RVLK G AC+ + + DV E+ +
Sbjct: 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLV 187
Query: 245 QKAGFKDVKLKRIGPKWYRGVRRHGL 270
++ GFK V + + L
Sbjct: 188 KEQGFKVVDGIGVYKRGVNEKMLGQL 213
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 18/179 (10%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
E + +V++ G G G T+ + K+ +T +D SP L KA
Sbjct: 19 SEQAETLEKLLHHDTVY-PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 154 KQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
++ +K ++ + LPF D +E+ P+ +K +VLK GG
Sbjct: 78 RENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT 137
Query: 211 ACVIGPVYPTFWL---SRFFADVWMLFPKE-----------EEYIEWFQKAGFKDVKLK 255
VI + + + + + W + + Q++GF+ ++++
Sbjct: 138 ITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-32
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 14/167 (8%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---E 157
++ A+ RV+D+G G G T L +V + +D + + A +
Sbjct: 10 LGLMIKTAEC-RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK 66
Query: 158 PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217
++ +G AE LPFP D D + ++ D ++ ++E RVLK G+ ++
Sbjct: 67 GVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126
Query: 218 YPTFWLSRFFADVWML--------FPKEEEYIEWFQKAGFKDVKLKR 256
P + F + E+ F +++
Sbjct: 127 APEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 14/184 (7%)
Query: 95 HWTEDM-RDEALEPADLFDR-----NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSP 147
+D R E +P + M V+DVG G GF + K V K V +D
Sbjct: 13 KKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQE 72
Query: 148 HQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRV 204
+ A +K LK +++ + +P P + D A + +P + ++E RV
Sbjct: 73 EMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRV 132
Query: 205 LKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRG 264
K +I +V+ E E + AG + ++ +G +
Sbjct: 133 AKPFAYLAIIDWKKEERDKGPPPEEVY----SEWEVGLILEDAGIRVGRVVEVGKYCFGV 188
Query: 265 VRRH 268
Sbjct: 189 YAMI 192
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-27
Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAK 152
+ + + + + + +VD G G G+ L ++ + T +D LA+
Sbjct: 7 DDYVSFLVNTVWKI----TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE 62
Query: 153 AKQKEPLKECTI--IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
A++ L +EGDA ++ D D + + + P+ +++ +K GGK
Sbjct: 63 ARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 121
Query: 211 ACVIGPVYPTFWLSRFF-----------ADVWMLFPKEEEYI-----------EWFQKAG 248
P + + S + LF + + + + G
Sbjct: 122 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELG 181
Query: 249 FKDVK 253
K+++
Sbjct: 182 VKNIE 186
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 5e-27
Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 14/180 (7%)
Query: 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 146
Y + + + +L + + D+G GTG ++ + V ++ S
Sbjct: 12 YSQT-RVPDI--RIVNAIINLLNL-PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPS 65
Query: 147 PHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK 206
+A + G AE+L P D +S +I ++ ++ +E R+++
Sbjct: 66 IVMRQQAVVHPQV---EWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122
Query: 207 IGGKACVI--GPVYPTFWLSRFFADVW---MLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261
G + + WL +F +W + F +E I Q+ + V+
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPH 182
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 33/212 (15%)
Query: 73 KKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTL 129
E + +S YD P +D ++ A + N ++D+G GTG +
Sbjct: 3 LSEIKRKFDAVSGKYDEQRRKFIPCF--DDFYGVSVSIASVDTENPDILDLGAGTGLLSA 60
Query: 130 GIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188
+++ T++D S L AK + + IE D F Y D VSA SI
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSI 119
Query: 189 EYWPDPQRG--IKEAYRVLKIGGKACVIGPVYP-TFWLSRFFADVW-------------- 231
+ D + K +Y +LK G V+ T ++ +W
Sbjct: 120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEI 179
Query: 232 ---------MLFPKEEEYIEWFQKAGFKDVKL 254
+ + + W ++AGF+DV
Sbjct: 180 AAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC 211
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-26
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160
+E L + +VD G G GF +++ + +D + L + K+K
Sbjct: 6 PEEYLPNIFE-GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---- 58
Query: 161 ECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT 220
+ ++ P + D + A S D Q I E R+LK G+ +I
Sbjct: 59 -FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117
Query: 221 FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262
+ + + E++Y+ WF + F K P +
Sbjct: 118 TGIGPPLS----IRMDEKDYMGWF--SNFVVEKRFNPTPYHF 153
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-25
Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 27/213 (12%)
Query: 81 RFLSIVYDHVINPGHWTEDMRDEALEPA--DLFDR---------NMRVVDVGGGTGFTTL 129
+ ++ ++ G+W + D +++ A L D RV+DVG G G +
Sbjct: 18 DPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAV 77
Query: 130 GIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CTIIEGDAEDLPFPTDYADRYVSA 185
+ D VT + S Q+ +A L T DA DLPF D +
Sbjct: 78 RLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWAL 136
Query: 186 GSIEYWPDPQRGIKEAYRVLKIGGKACV--------IGPVYPTFWLSRFFADVWMLFPKE 237
S+ + PD R ++E RVL+ GG + + + +
Sbjct: 137 ESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGI 196
Query: 238 EEYIEWFQKAGFKDVKLKRIGP---KWYRGVRR 267
+EY ++A I
Sbjct: 197 DEYESDVRQAELVVTSTVDISAQARPSLVKTAE 229
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 7e-25
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 10/183 (5%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA 137
+ + F+ + + G + + +A+ + + ++ D+G GTG TL + +V
Sbjct: 11 FDFSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG 70
Query: 138 KNVTILDQSPHQLAKAKQ---KEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
+ +T +D P + + K + I G ++LPF + D S G+I Y
Sbjct: 71 Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI-YNIG 128
Query: 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM----LFPKEEEYIEWFQKAGF 249
+RG+ E + LK GG V + T D WM I+ ++AG+
Sbjct: 129 FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY 188
Query: 250 KDV 252
Sbjct: 189 TPT 191
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 1e-24
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 15/193 (7%)
Query: 71 QHKKEAFWFYRFLSIVYDHVINPGHW---TEDMRDEALEPADLFDRNMRVVDVGGGTGFT 127
K F L+++ D N + ++ +AL D + D+G GTG
Sbjct: 3 NENKTIHDFE--LNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60
Query: 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CTIIEGDAEDLPFPTDYADRYV 183
T+ + HV + VT LD + + + L+ T I G +DLPF + D
Sbjct: 61 TMVLAGHVTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119
Query: 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM----LFPKEEE 239
S G+I Y +RG+ E + LK GG V + T D WM
Sbjct: 120 SEGAI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPN 178
Query: 240 YIEWFQKAGFKDV 252
+ KAG+ V
Sbjct: 179 QVAKIHKAGYLPV 191
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 2e-24
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 37/180 (20%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--------EPLKEC 162
+ ++D+G G+G +L + +VT +D + + A+ + +
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
Query: 163 TIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ---RGIKEAYRVLKIGGKACVI---GP 216
+A L F D V + PDP+ R IKE +RVLK G ++
Sbjct: 86 EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145
Query: 217 VYPTF-------------WLSRFFA--------DVWMLFPKEEEYIEWFQKAGFKDVKLK 255
+ F A + E+E + F+ +
Sbjct: 146 WHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-24
Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 10/174 (5%)
Query: 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE 161
+ L +L + N +V+D+G G G + I + A + +D + + A ++
Sbjct: 45 KKILSDIEL-NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNN 102
Query: 162 -CTIIEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIKEAYRVLKIGGKA-----CV 213
D FP + D S +I + + ++ Y+ LK G C
Sbjct: 103 KIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162
Query: 214 IGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRR 267
+ EEY + FK+V K + W + +
Sbjct: 163 TEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEV 216
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 1e-23
Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 14/185 (7%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
E + E L R + +D+G G G +V+ ++ L+ +P Q + +
Sbjct: 65 RTDEWLASELAMTGVL-QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNE 122
Query: 155 Q---KEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
+ + L + T+ G ++P + D S + + PD + +E RVLK G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 211 ACVIGPVYPTFWLSRF---FADVWML--FPKEEEYIEWFQKAGFKDVKLKRIG---PKWY 262
+ P+ D L Y ++ G ++ Y
Sbjct: 183 MAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHY 242
Query: 263 RGVRR 267
V+
Sbjct: 243 SKVKA 247
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-23
Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 18/173 (10%)
Query: 87 YDHV--INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILD 144
Y+ G + + AL+ L +++VG GTG+ + + ++
Sbjct: 10 YEAWYGTPLGAYVIAEEERALKG--LLPPGESLLEVGAGTGYWL----RRLPYPQKVGVE 63
Query: 145 QSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRV 204
S LA +++ P E T + E LPFP + D + ++E+ D +R + EA RV
Sbjct: 64 PSEAMLAVGRRRAP--EATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRV 121
Query: 205 LKIGGKACV--------IGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249
L+ GG V +Y F E+
Sbjct: 122 LRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEA 174
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 4e-23
Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 20/165 (12%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172
V++ G GTG T ++ + V ++ S AK+K P KE +I EGD
Sbjct: 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSF 101
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVIGPVYPT---------F 221
PT D VS + + D ++ I + ++L GGK ++
Sbjct: 102 EVPTSI-DTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEA 160
Query: 222 WLSRFFADVW-----MLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261
R F + + + F+ GF + W
Sbjct: 161 AKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVW 205
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 6e-23
Identities = 44/207 (21%), Positives = 71/207 (34%), Gaps = 31/207 (14%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-D 136
+ L+ + D V+ + L V+D+G GTG K V +
Sbjct: 53 SHRKILADIADEVLEKFY----GCGSTLPADGS-LEGATVLDLGCGTGRDVYLASKLVGE 107
Query: 137 AKNVTILDQSPHQLAKAKQKEPLKE-----------CTIIEGDAEDL------PFPTDYA 179
V +D +QL A++ ++G E+L P
Sbjct: 108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSV 167
Query: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML------ 233
D +S + KE +RVL+ GG+ VY LS +L
Sbjct: 168 DIVISNCVCNLSTNKLALFKEIHRVLRDGGEL-YFSDVYADRRLSEAAQQDPILYGECLG 226
Query: 234 -FPKEEEYIEWFQKAGFKDVKLKRIGP 259
E++ +AGF+DV+L +GP
Sbjct: 227 GALYLEDFRRLVAEAGFRDVRLVSVGP 253
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 1e-22
Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 24/201 (11%)
Query: 87 YD----HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTI 142
YD H A+ P +++G GTG L ++
Sbjct: 12 YDRLRAHPPEVAGQIATAMASAVHPKG---EEPVFLELGVGTGRIALPLIAR--GYRYIA 66
Query: 143 LDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKE 200
LD L +QK ++ +++ DA +P P + + PD + + E
Sbjct: 67 LDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAE 126
Query: 201 AYRVLKIGGKACVI---GPVYPTFWLSR----------FFADVWMLFPKEEEYIEWFQKA 247
A RVLK GG P + L F + + + +E E ++
Sbjct: 127 AIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186
Query: 248 GFKDVKLKRIGPKWYRGVRRH 268
G K + + R R
Sbjct: 187 GLKPRTREVARWREERTPREA 207
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-22
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 21/176 (11%)
Query: 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPL 159
L+ + + + V+D G G L I ++ S QL KA+ +E
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN 70
Query: 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPV 217
+ I +GD LPF + S G+I + D + I E RVLK GG AC+
Sbjct: 71 FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130
Query: 218 YP-------------TFWLSRFFADVWMLFPKEEEYIEWFQKAGF---KDVKLKRI 257
F V + EE ++F+ +D ++RI
Sbjct: 131 TKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERI 186
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-22
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 25/166 (15%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172
RV+D+GGGTG +L + + V ++D S L A++K ++E AEDL
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREK---GVKNVVEAKAEDL 108
Query: 173 PFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW 231
PFP+ + ++ G + Y + + E RVL G + TF D W
Sbjct: 109 PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW 168
Query: 232 MLFPK--------EEEYIEWF-----------QKAGFKDVKLKRIG 258
+ + F GF+ V ++ IG
Sbjct: 169 DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIG 214
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-21
Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 18/197 (9%)
Query: 79 FYRFLSIVYDHVINP-GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA 137
+YR D E + ++ + +V+D+ G G + + +
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMK---YMKKRGKVLDLACGVGGFSFLLEDYG-- 60
Query: 138 KNVTILDQSPHQLAKAKQKEPLKECTI--IEGDAEDLPFPTDYADRYVSAGSIEYWP--D 193
V +D S + KA++ +E + I GDA L F D + SI ++ +
Sbjct: 61 FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120
Query: 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA-------DVWMLFPKEEEYIEWFQK 246
+ KE RVLK GK + + + + P +EE +
Sbjct: 121 LNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTV-VIE 179
Query: 247 AGFKDVKLKRIGPKWYR 263
+ + W +
Sbjct: 180 FKSEQDSFRVRFNVWGK 196
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-21
Identities = 39/198 (19%), Positives = 65/198 (32%), Gaps = 31/198 (15%)
Query: 87 YDHV-INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 145
Y + + L+ V+D+G G G+ + +H AK V +D
Sbjct: 17 YSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDL 75
Query: 146 SPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVL 205
S L +AK+K + ED+ D + +S+ ++ Y K+ Y L
Sbjct: 76 SERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135
Query: 206 KIGGKAC--VIGPVYPT----------------FWLSRFF-----------ADVWMLFPK 236
K G V PV+ + + R+F DV
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195
Query: 237 EEEYIEWFQKAGFKDVKL 254
YI+ K GF+ +
Sbjct: 196 VTTYIQTLLKNGFQINSV 213
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 6e-21
Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
++D+G GTG T I + V D + + KA+Q P DA +
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNYP--HLHFDVADARN 111
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACVIGPVYPTFWLSRFFADV 230
D S + + +P+ I ++ LK GG+ G ++ +
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170
Query: 231 W-------------MLFPKEEEYIEWFQKAGFKDV 252
FP EY+ +K GF
Sbjct: 171 LETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVT 205
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 7e-21
Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 25/216 (11%)
Query: 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLG 130
+ +YR + YD + + ALE + V+++ GTG+ T
Sbjct: 6 GLIESQLSYYRARASEYDAT--FVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRH 63
Query: 131 IVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190
+ A VT LD S +A+A + L + D D + D A + +
Sbjct: 64 LSGL--ADRVTALDGSAEMIAEAGRH-GLDNVEFRQQDLFDWTPDRQW-DAVFFAHWLAH 119
Query: 191 WPDPQRG--IKEAYRVLKIGGKACVIGPVY------------PTFWLSRFFAD-----VW 231
PD + + + GG + P + R D +
Sbjct: 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIV 179
Query: 232 MLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRR 267
+F E E G+ + Y R
Sbjct: 180 KVFRSPAELTERLTALGWSCSVDEVHPGFLYATCRP 215
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 1e-19
Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 10/161 (6%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDA 169
+D G G G T ++ + + V ++D + L +AK E +
Sbjct: 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL 137
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF 227
+D D D I + D ++ L+ G + + +
Sbjct: 138 QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 197
Query: 228 ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG--PKWYRGVR 266
+ AG + +R P V
Sbjct: 198 DSSVC--RDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 236
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 2e-19
Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 5/147 (3%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAED 171
R +D G G G T ++ + +L+ H L +AK++ + I E
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET 151
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
P + D V + Y D + K + L G D
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
Query: 230 VWMLFPKEEEYIEWFQKAGFKDVKLKR 256
+ + Y F ++G + VK
Sbjct: 212 SSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 2e-19
Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 38/192 (19%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172
+R+VD+G G G+ +H A V LD S LA+A+ P T D + L
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKL 101
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC--VIGPVY------------ 218
P D D S+ ++ Y D R + ++ L GG P+Y
Sbjct: 102 HLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDA 161
Query: 219 ---PTFWLSRFFADVWMLFPKE-----------EEYIEWFQKAGFKDVKL---------K 255
T+ + R+ + + ++GF +
Sbjct: 162 EGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEFCPTDAQI 221
Query: 256 RIGPKWYRGVRR 267
P+ + R
Sbjct: 222 TARPELAEELDR 233
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 2e-18
Identities = 35/199 (17%), Positives = 53/199 (26%), Gaps = 42/199 (21%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK---EPLKE-CTIIEG 167
V V G L + + +D P L A + L T+
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGI---KEAYRVLKIGGKACVIGPVYPTFW-- 222
DA L + D S G Y PD R + ++ LK GG P
Sbjct: 178 DAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP 236
Query: 223 --------------------LSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262
+R W + ++AGF D++ +
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR--------F 288
Query: 263 RGVRRHGLIMGCSVTGVKP 281
R + +V KP
Sbjct: 289 EDDRAR---LFPTVIARKP 304
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 6e-18
Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 30/205 (14%)
Query: 75 EAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH 134
E+F + S + + + + + ++++ +GGG G L I+
Sbjct: 17 ESFRRFLNHSTEHQCMQE---FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSK 73
Query: 135 VDAK------NVTILDQSPHQLAKAKQK------------EPLKECTIIEGDAEDLPFPT 176
V A+ N +++ S Q+AK K+ KE +
Sbjct: 74 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236
D + Y D +K + +L K +I + W + + FP+
Sbjct: 134 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQ 192
Query: 237 E--------EEYIEWFQKAGFKDVK 253
+ ++ + G K
Sbjct: 193 DDLCQYITSDDLTQMLDNLGLKYEC 217
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 7e-18
Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 24/186 (12%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
+++ +ALE R++D+GG TG V++ VTI+D P QL +
Sbjct: 162 FYSDQSFGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR 219
Query: 155 QKEPLKE----CTIIEGD--AEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLK 206
++ + D+PFPT D + ++ + + + I + +
Sbjct: 220 KQTAGLSGSERIHGHGANLLDRDVPFPTG-FDAVWMSQFLDCFSEEEVISILTRVAQSIG 278
Query: 207 IGGKACVIGPVYP-------TFWLSRFFADVWML------FPKEEEYIEWFQKAGFKDVK 253
K ++ ++ ++ L++ + ++ I + AG + +
Sbjct: 279 KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
Query: 254 LKRIGP 259
++
Sbjct: 339 IQDNIG 344
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 8e-18
Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 21/179 (11%)
Query: 93 PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152
GH+ + L+ + V+D+G +G I ++ V+ ++ P +
Sbjct: 14 SGHYYNAVNPNLLK--HIKKEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQ 69
Query: 153 AKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212
AK+K L + + + D+P+ + D + +E+ DP I++ +K G
Sbjct: 70 AKEK--LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVIL 127
Query: 213 V--------------IGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257
+ + + F E + F KAG+ K+ R+
Sbjct: 128 ASIPNVSHISVLAPLLAGNWTYTEYGLLDKT-HIRFFTFNEMLRMFLKAGYSISKVDRV 185
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 8e-17
Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 33/188 (17%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIE 166
D +++DVGGG G + ++KH + TIL+ P + + K I
Sbjct: 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA 246
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLKIGGKACVIGPVYPT---- 220
D +P AD + + + + K+A+ ++ GG+ ++ V
Sbjct: 247 VDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP 304
Query: 221 --FWLSRFFADVWMLFPK-----EEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMG 273
+LS + M F + Y E + G+KDV + R
Sbjct: 305 NFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHL------------ 352
Query: 274 CSVTGVKP 281
V VKP
Sbjct: 353 -LVQAVKP 359
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 19/155 (12%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
+R + D+G G G +T + +T +D L KA + P + D
Sbjct: 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--NTNFGKADLAT 89
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP-------------VY 218
D + ++ PD + + L+ GG V P
Sbjct: 90 WKPAQKA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETA 148
Query: 219 PTFWLSRFFADVWML---FPKEEEYIEWFQKAGFK 250
F+ + P +Y +
Sbjct: 149 DGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-15
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKE-CTIIEGDA 169
R++D+G G+G + T +D S A+AK++ + E I DA
Sbjct: 37 GTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
D G+ + + LK GG + P + + A
Sbjct: 96 AGYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ 154
Query: 230 VWMLFPKEE-----EYIEWFQKAGFKDVKLKRIGPKWYRGVRRHG 269
+ + + F G+ V++ G R+
Sbjct: 155 ACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQ---EGWDRYE 196
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
Query: 97 TEDMRDEALEPADLFD----RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152
+ M + A A L + ++V+D+ G + + +H + +D L
Sbjct: 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEV 203
Query: 153 AKQ---KEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLK 206
AK+ + + I G A ++ + D D + + ++ +++ L
Sbjct: 204 AKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALA 262
Query: 207 IGGKACVIGPVYPTFWLSRFFA---DVWMLFPK-------EEEYIEWFQKAGFKDVKLKR 256
+ GK V + + ++ A + ML EY F AGF +L
Sbjct: 263 VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS 322
Query: 257 IGP 259
+
Sbjct: 323 LPT 325
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 5e-15
Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 37/182 (20%)
Query: 107 PADLFDR--------NMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQ-- 155
P+D + +VDVG G G TL + + + + + D S + A+
Sbjct: 22 PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81
Query: 156 ---KEPLKECTIIEGDAEDLPF------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK 206
+ K + ++D F D + +W D ++ + AY L+
Sbjct: 82 EGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLR 140
Query: 207 IGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVR 266
G + G +FP E+ + + + + +GP W + R
Sbjct: 141 KDGTIAIWG-------------YADPIFPDYPEFDDLMIEVPYGK---QGLGPYWEQPGR 184
Query: 267 RH 268
Sbjct: 185 SR 186
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 30/187 (16%), Positives = 55/187 (29%), Gaps = 25/187 (13%)
Query: 94 GHWTEDMRDEALEPADLF----DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149
H + R + + A L + RV+D+G G G+ + +D
Sbjct: 29 RHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTL 86
Query: 150 LAKAKQK--EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207
+ A+ + + + +P DY D + ++ D + +L
Sbjct: 87 VDAARAAGAGEVHLASYAQLAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVP 144
Query: 208 GGKAC--VIGPV------YPTFWLSRFFADVWML-------FPKEEEYIEWFQKAGFKDV 252
GG + P Y W FA F ++ AG + V
Sbjct: 145 GGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204
Query: 253 KLKRIGP 259
L+
Sbjct: 205 SLQEPQH 211
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157
D+ EA + R +++D G G G + K +V D P + AKQ
Sbjct: 31 NDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF 88
Query: 158 PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACV- 213
P E + GD D VSAG++ + + + +R L G+A +
Sbjct: 89 P--EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146
Query: 214 ----IGPVYPTF--WLSRFFADVWMLFPKEEEYIEWFQKAGF 249
G V+ F R ++ F + + Q + F
Sbjct: 147 FGAGRGWVFGDFLEVAERVGLELENAFES-WDLKPFVQGSEF 187
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 7/156 (4%)
Query: 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158
+ D L + ++DVG GTG T + + L+ + + A+Q P
Sbjct: 27 EDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHP 84
Query: 159 LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY--WPDPQRGIKEAYRVLKIGGKACVIGP 216
T G DL ++ S+ + + + ++ GG +
Sbjct: 85 --SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142
Query: 217 VYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252
P+ +P E + + AGF+
Sbjct: 143 SGPSLEPMYHPVATAYRWP-LPELAQALETAGFQVT 177
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 2e-14
Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 23/182 (12%)
Query: 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157
E D L + L RV++ G G G D SP L A+
Sbjct: 35 ELTFDLWL--SRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELLKLARANA 90
Query: 158 PLKECTIIEGDA-EDLPFPTDYA-DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215
P + E + +LP VS P I + +G
Sbjct: 91 P--HADVYEWNGKGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG 142
Query: 216 PVYPTFWLSRFFADVWMLFPKEEE---------YIEWFQKAGFKDVKLKRIGPKWYRGVR 266
P + A V E+ + +W + F +R VR
Sbjct: 143 PRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATVR 202
Query: 267 RH 268
Sbjct: 203 GM 204
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 3e-14
Identities = 37/186 (19%), Positives = 52/186 (27%), Gaps = 37/186 (19%)
Query: 68 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFT 127
R Q EAF Y W D ++ V D G G
Sbjct: 27 RLFQEDPEAFLLYHRG-----FQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRL 81
Query: 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187
I V ++ LD + D +P + D V S
Sbjct: 82 ASSIRNPVHCFDLASLDPR-----------------VTVCDMAQVPLEDESVDVAVFCLS 124
Query: 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA 247
+ + + ++EA RVLK GG A+V F ++ K
Sbjct: 125 L-MGTNIRDFLEEANRVLKPGGLL--------------KVAEVSSRFEDVRTFLRAVTKL 169
Query: 248 GFKDVK 253
GFK V
Sbjct: 170 GFKIVS 175
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 4e-14
Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 26/183 (14%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
+ + E +F+ +VDVGGGTG T I + T+ DQ P +
Sbjct: 174 ASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNL 232
Query: 154 KQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIKEAYRVLKI 207
E + GD + +P AD + + W D Q + KEA
Sbjct: 233 TGNE---NLNFVGGDMFKSIPS----ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGK 285
Query: 208 GGKACVIGPVYP------TFWLSRFFADVWMLFPK------EEEYIEWFQKAGFKDVKLK 255
GK +I + D+ ML ++E+ + AGF K+
Sbjct: 286 DGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345
Query: 256 RIG 258
I
Sbjct: 346 PIS 348
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 6e-14
Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 19/174 (10%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CTIIEGDAE 170
+VD G G G + + + ++ V + S Q + + + + +
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177
Query: 171 DLPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKA----CVIGPVY--PTFW 222
D PF ++ + E D E R LK+GG+ P Y P+ W
Sbjct: 178 DTPFDK---GAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKW 234
Query: 223 LSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP---KWYRGVRRHGLIMG 273
+S+ A EY+ + + P ++ L+ G
Sbjct: 235 VSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTG 288
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 6e-14
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 32/188 (17%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKE-CTIIE 166
F R V+D+ GG G +++ I D P A++ L E
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFE 235
Query: 167 GDA-EDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVIGPVYPTFWL 223
+ + F AD + + Y+ + I A ++K GG ++ +
Sbjct: 236 KNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV 295
Query: 224 SRFFA---DVWMLFPK-------EEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMG 273
+ + + M+ + AG + R + R+ L
Sbjct: 296 TPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE---------RSIGRYTL--- 343
Query: 274 CSVTGVKP 281
+ G +
Sbjct: 344 --LIGQRS 349
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-14
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 17/175 (9%)
Query: 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRN-----MRVVDVGGGTGFTTLGIVK 133
Y L+ YD + E ++ E ++F + RV+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYR--RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE 61
Query: 134 HVDAKNVTILDQSPHQLAKAKQKEPLKECTI--IEGDAEDLPFPTDYADRYVSAG-SIEY 190
V LD L A++K + I ++GD ++ F ++ D +I Y
Sbjct: 62 R--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF-DAVTMFFSTIMY 118
Query: 191 W--PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEW 243
+ D ++ + LK GG F+ R VW EE+ +
Sbjct: 119 FDEEDLRKLFSKVAEALKPGGVFITD--FPCWFYGGRDGPVVWNEQKGEEKLVIM 171
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 14/177 (7%)
Query: 80 YRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN 139
Y + VYD ++ + + + R+ D+G GTG TL + H +
Sbjct: 4 YEQFAYVYDELMQD----VPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE--- 56
Query: 140 VTILDQSPHQLAKAKQKEPLKECTI--IEGDAEDLPFPTDYADRYVSAGSIEY---WPDP 194
VT +D S L A++K + D +L P + S+ Y D
Sbjct: 57 VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADV 116
Query: 195 QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251
++ A R+L GGK + P + F + ++ YI WF G +
Sbjct: 117 KQTFDSAARLLTDGGK-LLFDVHSPYKMETLFNGKTYATHAEQSSYI-WFADPGEEP 171
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-13
Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 15/181 (8%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNM----RVVDVGGGTGFTTLGIVK 133
+ ++ +YD V +D EA + A L R+ ++DV GTG +
Sbjct: 13 DYSGEIAELYDLVHQ--GKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLAD 70
Query: 134 HVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
V L+ S LA A+++ P + + GD D ++ SI +
Sbjct: 71 S--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126
Query: 194 P---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250
++ + G V +P + + A + + +
Sbjct: 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGT--VEAGGTTVTRVSHSSRE 184
Query: 251 D 251
Sbjct: 185 G 185
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 6e-13
Identities = 20/189 (10%), Positives = 45/189 (23%), Gaps = 33/189 (17%)
Query: 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE-- 157
R E + +++++G G G + + V + +VT +D +
Sbjct: 32 RLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQA 90
Query: 158 ----------PLKECTIIEGDAEDL-PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK 206
++DL P + DR V A S+ Y+ +
Sbjct: 91 WNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA 150
Query: 207 IGGKACVI---GPVYPTFWLSRFFADVWM---------------LFPKEEEYIEWFQKAG 248
+ V + A + + +
Sbjct: 151 VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNT 210
Query: 249 FKDVKLKRI 257
+ +
Sbjct: 211 WTYTAGTIV 219
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 7e-13
Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 23/189 (12%)
Query: 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK 138
+Y + E ++ F RV+D+G G G L + K +
Sbjct: 13 YYFLFEEKFRGS------RELVKARLRRYIPYFKGCRRVLDIGCGRGEF-LELCKEEGIE 65
Query: 139 NVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--LPFPTDYADRYVSAGSIEYWPDPQ- 195
++ + D + + + K +++ DA + P Y D + + +E+ +
Sbjct: 66 SIGV-DINEDMIKFCEGK-----FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL 119
Query: 196 -RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV---WMLFPKEEEYIEWF-QKAGFK 250
+ Y +K + P + + F E +++ + GF+
Sbjct: 120 FELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPET--LKFILEYLGFR 177
Query: 251 DVKLKRIGP 259
DVK++
Sbjct: 178 DVKIEFFEE 186
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 8e-13
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 15/181 (8%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNM----RVVDVGGGTGFTTLGIVK 133
+ + VYD +D EA + ADL ++DV GTG K
Sbjct: 3 MYEVDHADVYDLFYL--GRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTK 60
Query: 134 HVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
+ L+ S L A+++ L + T+ +GD D ++ S+ Y
Sbjct: 61 EFG--DTAGLELSEDMLTHARKR--LPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116
Query: 194 P---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250
+ L+ GG V +P + + + ++ + + +
Sbjct: 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADV--VRRDGRTVARVSHSVRE 174
Query: 251 D 251
Sbjct: 175 G 175
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 1e-12
Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 18/181 (9%)
Query: 74 KEAFWFYR-FLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIV 132
E R FL + + + + E D D+ V+D+G G G+ T
Sbjct: 52 AEMMQARRAFLDAGHYQ-----PLRDAIVAQLRERLD--DKATAVLDIGCGEGYYTHAFA 104
Query: 133 KHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192
+ LD S + A ++ P + T + LPF D + Y P
Sbjct: 105 DALPEITTFGLDVSKVAIKAAAKRYP--QVTFCVASSHRLPFSDTSMDAIIRI----YAP 158
Query: 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVWMLFPKEEEYIEWFQKAGFKD 251
+E RV+K GG P L + L E +E F +
Sbjct: 159 ---CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAE 215
Query: 252 V 252
+
Sbjct: 216 L 216
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-12
Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 15/182 (8%)
Query: 93 PGHWTEDMRDEALEPAD----LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148
P W ++ + LF+ + ++D G G T + + V LD S
Sbjct: 32 PVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKS 89
Query: 149 QLAKAKQKEPLKECTIIEGDAEDL----PFPTDYADRYVSAGSIEYW---PDPQRGIKEA 201
L A ++ + D ++ D + + + + +
Sbjct: 90 ALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSL 149
Query: 202 YRVLKIGGKACV--IGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259
+L G + +G F+ S + + + F ++ P
Sbjct: 150 RILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFP 209
Query: 260 KW 261
+
Sbjct: 210 DF 211
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 25/171 (14%)
Query: 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI 164
+ +FD +VDVGGGTG T I + + D+ P + T
Sbjct: 180 RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSN---NLTY 235
Query: 165 IEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIKEAYRVLKIGGKACVIGPVY 218
+ GD +P AD + + W D + KEA GK +I V
Sbjct: 236 VGGDMFTSIPN----ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291
Query: 219 P------TFWLSRFFADVWMLFPK-----EEEYIEWFQKAGFKDVKLKRIG 258
+ DV M EEE+ + F +AGF+ K+ +
Sbjct: 292 DKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 342
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-11
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 21/175 (12%)
Query: 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159
M + F R ++++G G T + +H ++T ++ S ++ A+ +
Sbjct: 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD 86
Query: 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAY-RVLKIGGKACVIGP-- 216
T I ED P Y D V +E+ DP +K L GG+ ++ P
Sbjct: 87 G-ITYIHSRFEDAQLPRRY-DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144
Query: 217 ------VYPTFWLSRFFADVWML--------FPKEEEYIEWFQKAGFKDVKLKRI 257
+ + + V + +AG + I
Sbjct: 145 NAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 199
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 14/177 (7%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA 137
++ + Y +I T + R+ A + V+++ G G T +
Sbjct: 50 FYDEGAADTYRDLIQDADGTSEAREFATR---TGPVSGPVLELAAGMGRLTFPFLDL--G 104
Query: 138 KNVTILDQSPHQLAKAKQK------EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191
VT L+ S LA +++ + CT+++GD + +S+GSI
Sbjct: 105 WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINEL 164
Query: 192 PDPQRG--IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246
+ R L+ GGK ++ S L + +
Sbjct: 165 DEADRRGLYASVREHLEPGGKF-LLSLAMSEAAESEPLERKQELPGRSGRRYVLHVR 220
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 6e-11
Identities = 44/254 (17%), Positives = 67/254 (26%), Gaps = 52/254 (20%)
Query: 53 TPRCS-LSSSRPASQPRFIQHKKEAFWFYRFLS----------IVYDHVINPGHWTEDMR 101
T L A + +++ Y W +
Sbjct: 79 TEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGS 138
Query: 102 DEALEPADLFDRNM---------------------RVVDVGGGTGFTTLGIVKHVDAKNV 140
D L + FD M VVDVGGG+G ++ + +
Sbjct: 139 DPVL--SASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSG 196
Query: 141 TILDQSPHQLAKAKQKEPLKE----CTIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ 195
T+LD + A ++ ++ G + LP A YV + + W D
Sbjct: 197 TVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGYVLSAVLHDWDDLS 252
Query: 196 -RGI-KEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK------EEEYIEWFQKA 247
I + GG VI V D+ ML E E +A
Sbjct: 253 AVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGM-DLRMLTYFGGKERSLAELGELAAQA 311
Query: 248 GFKDVKLKRIGPKW 261
G I
Sbjct: 312 GLAVRAAHPISYVS 325
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 18/161 (11%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGD 168
F V DVGGG G L +++ +LD+ +A+ + P ++EGD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVARHRLDAPDVAGRWKVVEGD 240
Query: 169 A-EDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225
++P +AD +V + W D R + RV+ G+ VI V P +
Sbjct: 241 FLREVP----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH 296
Query: 226 FFA--DVWML-FPK-----EEEYIEWFQKAGFKDVKLKRIG 258
D ML E F AG + ++
Sbjct: 297 QSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTS 337
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-10
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 10/166 (6%)
Query: 86 VYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 145
Y + + +++++G G G+ ++ +V D
Sbjct: 16 FYRGNATAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAA--GFDVDATDG 73
Query: 146 SPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYR 203
SP A+A ++ + L Y D + + + P + +K +R
Sbjct: 74 SPELAAEASRRLG---RPVRTMLFHQLDAIDAY-DAVWAHACLLHVPRDELADVLKLIWR 129
Query: 204 VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249
LK GG R + +P EE + +AG
Sbjct: 130 ALKPGGL-FYASYKSGE-GEGRDKLARYYNYPSEEWLRARYAEAGT 173
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 45/185 (24%), Positives = 64/185 (34%), Gaps = 26/185 (14%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
H + LE F+ +VDVGGG G T I H D PH +++A
Sbjct: 183 NHSIIIT-KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEA 240
Query: 154 KQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGK 210
Q T + GD +++P D + + W D +K Y L GK
Sbjct: 241 PQFP---GVTHVGGDMFKEVPS----GDTILMKWILHDWSDQHCATLLKNCYDALPAHGK 293
Query: 211 ACVIGPVYP------TFWLSRFFADVWMLFPK-------EEEYIEWFQKAGFKDVKLKRI 257
++ + P F D+ ML E E+ + AGF VK I
Sbjct: 294 VVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353
Query: 258 -GPKW 261
W
Sbjct: 354 YANAW 358
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 18/162 (11%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIE 166
F VD+GGG G ++ T+L++ P +A++ + C I+
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILP 258
Query: 167 GDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLKIGGKACVIGPVYP-TFW 222
GD E +P D AD Y+ + W D I + +K + VI +
Sbjct: 259 GDFFETIP---DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA 315
Query: 223 LSRFFADVWMLFPK------EEEYIEWFQKAGFKDVKLKRIG 258
S F D+ +L E E+ +K+G + + G
Sbjct: 316 ASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCG 357
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-10
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECTIIEG 167
F R R V +GGG T ++ HV V +++ P +++ + +I G
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITG 179
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF 227
D + ++ V+A + +R + +R + + +
Sbjct: 180 DETVIDGL-EFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTY----TGMRAIL 230
Query: 228 ADVWMLFPKEEEYIEWFQK 246
P ++ I F++
Sbjct: 231 -----YAPVSDDDITGFRR 244
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 16/173 (9%)
Query: 80 YRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNM----RVVDVGGGTGFTTLGIVKHV 135
Y + +YD +I D + + + N +D+ GTG T +
Sbjct: 3 YNKFAHIYDKLIR---ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK- 58
Query: 136 DAKNVTILDQSPHQLAKAKQKEPLKECTI--IEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
KN +D S L++A+ K + D +L + S Y D
Sbjct: 59 -FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIID 117
Query: 194 P---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEW 243
++ K LK GG + + LS+ + + +E + W
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIF--DINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 5e-10
Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 17/167 (10%)
Query: 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGD 168
R++ +G G + + NVT +D S +A + + + D
Sbjct: 39 ELRPEDRILVLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVPQLRWETMD 97
Query: 169 AEDLPFPTDYAD---------------RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV 213
L FP+ D R S E + + E RVL GG+
Sbjct: 98 VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157
Query: 214 IGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260
+ P F + + + Y F + K ++
Sbjct: 158 MTSAAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHKGGKLSVA 204
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-10
Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 21/166 (12%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIE 166
+ V+DVGGG G I T+++ +A+++ T+ E
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE 238
Query: 167 GDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLKIGGKACVIGPVYP---- 219
GD + LP AD + + + W D I + R L+ GG+ V+
Sbjct: 239 GDFFKPLP---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG 295
Query: 220 TFWLSRFFADVWMLFPK------EEEYIEWFQKAGFKDVKLKRIGP 259
D+ ML +E ++ AG + G
Sbjct: 296 ADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 341
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 25/181 (13%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
+ T M + LE + F+ +VDVGGGTG IV + N D PH + A
Sbjct: 185 SNSTITM-KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDA 242
Query: 154 KQKEPLKECTIIEGD-AEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGK 210
+ GD + +P D W D + +K Y L GK
Sbjct: 243 PAFS---GVEHLGGDMFDGVPK----GDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK 295
Query: 211 ACVIGPVYP------TFWLSRFFADVWMLFPK-------EEEYIEWFQKAGFKDVKLKRI 257
V + P D ML E+E+ +GF+ K+
Sbjct: 296 VIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASC 355
Query: 258 G 258
Sbjct: 356 A 356
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-10
Identities = 40/259 (15%), Positives = 75/259 (28%), Gaps = 49/259 (18%)
Query: 43 FTSDQNAKFF-TPRCSLSSSRPASQPRFIQHKKEAFW--FYRFLSIV------YDHVINP 93
F D + TP L S + E F + + ++
Sbjct: 71 FQGDTRDGYANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGE 130
Query: 94 GHWTEDMRDEALEPADLFDRNM-------------------RVVDVGGGTGFTTLGIVKH 134
++ R F M VDVGGG+G T I++
Sbjct: 131 DFYSYLKRCPDA--GRRFLLAMKASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQA 188
Query: 135 VDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIEGDA-EDLPFPTDYADRYVSAGSIE 189
+ +LD+ L A+ +++ GD +++P D Y+ + I
Sbjct: 189 EPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP---SNGDIYLLSRIIG 244
Query: 190 YWPDPQ-RGI-KEAYRVLKIGGKACVIGPVYPTFWLSRF--FADVWMLFP---KE---EE 239
+ + + G+ VI S DV + + EE
Sbjct: 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEE 304
Query: 240 YIEWFQKAGFKDVKLKRIG 258
++ + GF ++ +
Sbjct: 305 VVDLLGRGGFAVERIVDLP 323
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 22/165 (13%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIE 166
+ V+DVGGG G I + + T+L+ + A+ + ++E
Sbjct: 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE 239
Query: 167 GDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLKIGGKA----CVIGPVYP 219
GD E LP AD + + + WPD I L+ GG+
Sbjct: 240 GDFFEPLPRK---ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS 296
Query: 220 TFWLSRFFADVWMLFP---KE---EEYIEWFQKAGFKDVKLKRIG 258
D+ ML E++ AG +++++
Sbjct: 297 FNEQFTEL-DLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP 340
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 8/99 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDL 172
+ +D+G G G +L + + +V D++ +A ++ E L D +L
Sbjct: 35 KTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL 92
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGG 209
F Y D +S + + I R K GG
Sbjct: 93 TFDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGG 130
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 35/163 (21%), Positives = 55/163 (33%), Gaps = 20/163 (12%)
Query: 95 HWTEDMRDEALEPADLFDRNM------RVVDVGGGTG-----FTTLGIVKHVDAKNVTIL 143
+++ EP D +++ + G G +LG VT +
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-------EVTAV 57
Query: 144 DQSPHQLAKAKQ--KEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEA 201
DQS LAKAKQ +E + T ++ + D D + VS Q+ +
Sbjct: 58 DQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKV 117
Query: 202 YRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF 244
Y+ LK GG + G + L PK E
Sbjct: 118 YQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSEL 160
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 23/143 (16%)
Query: 92 NPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQL 150
N + D ++ VVD G G T + V V D +
Sbjct: 7 NSLGQSHDYIKMFVKE------GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAI 60
Query: 151 AKAKQK----EPLKECTIIEGDAEDLPFPTD-------YADRYVSAG---SIEYWPDPQR 196
A +K + T+I+ +++ D + Y+ +G +
Sbjct: 61 ANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQ 120
Query: 197 GIKEAYRVLKIGGKACVIGPVYP 219
+ +A +L GG V+ +Y
Sbjct: 121 ALSKAMELLVTGGIITVV--IYY 141
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 34/178 (19%), Positives = 53/178 (29%), Gaps = 30/178 (16%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
+M LE F+ +VDVGGG+G I+ D P + A
Sbjct: 191 DVCATEM-KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA 248
Query: 154 KQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIKEAYRVLKI 207
PL + GD +P D + W D + +A L
Sbjct: 249 P---PLSGIEHVGGDMFASVP----QGDAMILKAVCHNWSDEKCIEFLSNCHKA---LSP 298
Query: 208 GGKACVI------GPVYPTFWLSRFFADVWML-FPK-----EEEYIEWFQKAGFKDVK 253
GK ++ P D M E++Y + + +GF +
Sbjct: 299 NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 356
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-08
Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 24/153 (15%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRN--MRVVDVGGGTGFTTLGIVKHV 135
+ + V+ I + L ++ RV+DV GTG ++ +V+
Sbjct: 22 YADGEAARVWQLYIG--DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE- 78
Query: 136 DAKNVTILDQSPHQLAKAKQK--EPLKECTIIEGDAEDLPFPTDYADRYVSAG------- 186
+VT +D S L A ++ KE + E+ + T D G
Sbjct: 79 -GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 137
Query: 187 --SIEYWPDPQRG-------IKEAYRVLKIGGK 210
S + PD + +K +++ GG
Sbjct: 138 GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 6e-08
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)
Query: 95 HWTEDMRDEALEPADLFD-RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
+ E R L L +++G G T + H +T++D P + +A
Sbjct: 32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRA 89
Query: 154 KQK-EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP---QRGIKEAYRVLKIGG 209
Q+ + + D + D V A + Y D + I ++L GG
Sbjct: 90 CQRTKRWSHISWAATDILQFSTAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGG 148
Query: 210 K--ACVIGPVYPTFWLSRFFAD-VWMLFPKEEEYIEWFQKAG 248
W A+ V + + +E Q G
Sbjct: 149 HLVFGSARDATCRRWGHVAGAETVITILTEALTEVERVQCQG 190
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 9e-08
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 30/188 (15%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK--------EPLKECTIIEG 167
+V+D+G G G ++K + +T +D S L +AK + K ++ +
Sbjct: 32 KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVIGPVYPTFWLSR 225
D IE+ + + K + + V P +
Sbjct: 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVSTPNKE--YNFH 148
Query: 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGV-RRHGLIMGCSVTGVKPLSG 284
+ + EW +K F+ W V ++G + G
Sbjct: 149 YGNLFEGNLRHRDHRFEWTRK-EFQT---------WAVKVAEKYGYS--VRFLQI----G 192
Query: 285 DSPLQLGP 292
+ + G
Sbjct: 193 EIDDEFGS 200
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 22/164 (13%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--------TIIEG 167
RV+D+G G G ++K + +T +D S L A+++ +I+G
Sbjct: 32 RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVI-------GPVY 218
D IE+ + G + + + ++ +
Sbjct: 92 ALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI--VIVTTPNIEYNVKF 149
Query: 219 PTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK---DVKLKRIGP 259
+ ++ W K + +V+ + IG
Sbjct: 150 ANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGE 193
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-07
Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 37/220 (16%)
Query: 70 IQHKKEAFWFYRFLSIVYDHVIN---PGHWTEDMRDEALEPADLF-DRNMRVVDVGGGTG 125
K F F ++ V+ +I PG+ ++ A+ F + V D+G G
Sbjct: 13 PIAKLGDFIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRG 70
Query: 126 FTTLGIVKHVDAKNVTI--LDQSPHQLAKAKQK-EPLKECTIIE-GDAEDLPFPTDYADR 181
TL ++++ NV I +D S + + +Q +E + A
Sbjct: 71 AATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASM 130
Query: 182 YVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVWMLFPK-- 236
+ ++++ P R + + Y L G + ++ D+ F +
Sbjct: 131 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRAN 190
Query: 237 ----------------------EEEYIEWFQKAGFKDVKL 254
E + + GF V+L
Sbjct: 191 GYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 230
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 7e-07
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 31/189 (16%)
Query: 77 FWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD 136
F+ + + H + + P +V+D+G G G +L +
Sbjct: 91 FYCKKEDYFSKKYNTTAIHGDVVDAAKIISPC-------KVLDLGCGQGRNSLYLSLL-- 141
Query: 137 AKNVTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
+VT D + + +A + KE L + D +Y D VS +
Sbjct: 142 GYDVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENY-DFIVSTVVFMFLNR 199
Query: 194 PQRG--IKEAYRVLKIGGKACVI---------GPVYPTFW-----LSRFFADVWMLFPKE 237
+ IK +GG ++ P+ +F L ++ D W
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD-WEFLEYN 258
Query: 238 EEYIEWFQK 246
E E +
Sbjct: 259 ENMGELHKT 267
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-06
Identities = 38/256 (14%), Positives = 62/256 (24%), Gaps = 80/256 (31%)
Query: 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLS---IVYDHVINPGHWTEDMRDE 103
Q +T R SS + IQ + + +V +V N W
Sbjct: 208 QIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW------- 259
Query: 104 ALEPADLFD---------RNMRVVDVGGGTGFTTLGIVKHVD-----------AKNVTIL 143
+ F+ R +V D T + + H K +
Sbjct: 260 -----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 144 DQS-PHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RG 197
Q P + P + +II AE + D + W
Sbjct: 315 PQDLPRE---VLTTNPRR-LSII---AESIR---DGLAT------WDNWKHVNCDKLTTI 358
Query: 198 IKEAYRVLKIGG-----KACVIGP--------VYPTFWLSRFFADVWMLFPKEEEYIEWF 244
I+ + VL+ + P + W +DV +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-------MVVVNKL 411
Query: 245 QKAG--FKDVKLKRIG 258
K K K I
Sbjct: 412 HKYSLVEKQPKESTIS 427
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-06
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 115 MRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK------EPLKECTIIEG 167
RV++ G G+G TL +++ V A V +Q A++ +P ++
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216
D D P DR ++ P + R+L GG V
Sbjct: 161 DLADSELPDGSVDR-----AVLDMLAPWEVLDAVSRLLVAGGVLMVYVA 204
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-06
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 29/144 (20%)
Query: 92 NPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA 151
P H + D E L+ VVD G G T + +K V D L
Sbjct: 7 RPIHMSHDFLAEVLDDES------IVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALG 58
Query: 152 KAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSA--GSIEYWPDP-----------Q 195
K Q+ ++ +I E+L Y + A ++ Y P
Sbjct: 59 KTSQRLSDLGIENTELILDGHENLD---HYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115
Query: 196 RGIKEAYRVLKIGGKACVIGPVYP 219
I++ L++GG+ ++ +Y
Sbjct: 116 EAIEKILDRLEVGGRLAIM--IYY 137
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 116 RVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---------EPLKECTII 165
+VD G G+G ++ + + + +D SP LA+A + +K T+
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG--IKEAYRVLK 206
+G + D IE+ + Q ++ +
Sbjct: 784 DGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH 826
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153
+++ + E N VVD+ G G ++ AK + +D +PH +
Sbjct: 176 VYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIACKN---AKKIYAIDINPHAIELL 232
Query: 154 KQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGG 209
K+ L + I D ++ + + + ++ +A +++ GG
Sbjct: 233 KKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKFAHKFID-------KALDIVEEGG 285
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-05
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 108 ADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--KEPLKECTII 165
A + RV++VG G + + I++ + + + + +
Sbjct: 55 AAASSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPL 113
Query: 166 EGDAED-LPFPTD------YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
+G ED P D D Y + + A+R+LK GG
Sbjct: 114 KGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 165
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-05
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK----EPLKECTIIEGDA 169
M +++VG G+G + I+ ++ K +T++++ L KA + D
Sbjct: 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF 221
D D I PDP +++ ++K G A P +
Sbjct: 172 ADFISDQM-YDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQS 217
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 5e-05
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 15/147 (10%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGD 168
R V+D+G G G L + +D + + A+ + + + D
Sbjct: 64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122
Query: 169 AEDLPFPTDYADRYVSA-GSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWL 223
+ +S+ S Y + R L+ GG ++ L
Sbjct: 123 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGY-FIMTVPSRDVIL 181
Query: 224 SRFFADVWMLFPKEEEYIEWFQKAGFK 250
R+ + Y +K
Sbjct: 182 ERYKQGRM----SNDFYKIELEKMEDV 204
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 7e-05
Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 8/147 (5%)
Query: 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQS 146
Y NP ED R L+P + F R V+D+G G TL I + LD
Sbjct: 24 YYGYRNPSC--EDGRLRVLKP-EWF-RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID 79
Query: 147 PHQLAKAK---QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD-PQRGIKEAY 202
+ A+ + +E + E P + A
Sbjct: 80 SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAA 139
Query: 203 RVLKIGGKACVIGPVYPTFWLSRFFAD 229
+ + G + P F + D
Sbjct: 140 PQVPLDGADTSVFPNNVVFVTGNYVLD 166
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 8e-05
Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 24/190 (12%)
Query: 90 VINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149
+I G T D+ + L + + +D+G G G + + +D
Sbjct: 2 LILKGTKTVDLSKDELT-EIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKEN 60
Query: 150 L-------AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY-WPDPQRG---- 197
L K K L + AE LPF + SI + W
Sbjct: 61 LFDISKKIIKKPSKGGLSNVVFVIAAAESLPF---ELKNIADSISILFPWGTLLEYVIKP 117
Query: 198 ----IKEAYRVLKIGGKACVIGPV----YPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249
+ + K + R + + E+Y +GF
Sbjct: 118 NRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGF 177
Query: 250 KDVKLKRIGP 259
+ +K +
Sbjct: 178 RIDDVKELDN 187
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Length = 272 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 29/186 (15%)
Query: 91 INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH-- 148
+ W++ +E A + + N VVD+ G G+ T+ + K+ K V ++++P
Sbjct: 97 VAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAY 156
Query: 149 -QLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVS---AGSIEYWPDPQRGIKEAYRV 204
L + + L I D D+ D ADR + + ++ + +
Sbjct: 157 HYLCENIKLNKLNNVIPILADNRDVELK-DVADRVIMGYVHKTHKFLD-------KTFEF 208
Query: 205 LKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL-----KRIGP 259
LK G A+ M E + +K G+K + K+ P
Sbjct: 209 LKDRG----------VIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAP 258
Query: 260 KWYRGV 265
+ V
Sbjct: 259 GVWHVV 264
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 108 ADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKEC-T 163
A + ++DVG + + +V+ K+ + A + LKE
Sbjct: 10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQ 69
Query: 164 IIEGDAEDLPFPTDYADRYVSAG 186
+ + TD AG
Sbjct: 70 VRLANGLAAFEETDQVSVITIAG 92
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQK-EPLKECTIIEGDAEDL 172
+V+ G G+G TL + V + + + A + + + +D+
Sbjct: 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI 154
Query: 173 --PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216
+ D + P P+R ++ A + LK GG P
Sbjct: 155 YEGIEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTP 195
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 4e-04
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP 173
V++ G G+G +L + K V ++ V + AK+ + E+ P
Sbjct: 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 166
Query: 174 FPTDYADRYVSAGSIE-----------YWPDPQRGIKEAYRVLKIGGKACVIGP 216
D+ + +S + + +P + Y LK GG V
Sbjct: 167 DNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 220
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 6e-04
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ------KEPLKECTIIEGDA 169
+VD+G G G L ++ V +D+SP +A ++ E L C + +A
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284
Query: 170 EDLPFPTDYADRYVS-----AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG----PVYPT 220
P + + + A R LKI G+ ++ Y
Sbjct: 285 LSGVEPFRF-NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLD-YFH 342
Query: 221 FWLSRFFADV 230
L + F +
Sbjct: 343 -KLKKIFGNC 351
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 39.6 bits (91), Expect = 9e-04
Identities = 29/155 (18%), Positives = 44/155 (28%), Gaps = 23/155 (14%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ----------KEPLKE 161
R++ V+D+G G G L K + D + + + +Q E +
Sbjct: 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFS 91
Query: 162 CTIIEGDA------EDLPFPTDYADRYVSAGSIEY----WPDPQRGIKEAYRVLKIGGKA 211
I D+ + P D Y + ++ A L GG
Sbjct: 92 AEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYF 151
Query: 212 CVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246
P F L R E Y FQK
Sbjct: 152 IGTTPNS--FELIRRLEASETESFGNEIYTVKFQK 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.89 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.88 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.88 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.88 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.88 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.87 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.87 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.87 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.86 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.86 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.86 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.86 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.86 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.86 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.86 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.85 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.85 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.85 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.85 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.85 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.85 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.84 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.84 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.84 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.84 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.83 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.83 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.83 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.83 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.83 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.83 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.83 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.83 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.83 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.82 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.82 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.81 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.81 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.81 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.81 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.81 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.81 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.81 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.8 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.8 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.8 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.8 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.8 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.8 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.8 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.79 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.79 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.79 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.79 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.78 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.78 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.78 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.78 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.78 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.77 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.77 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.77 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.77 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.77 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.76 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.76 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.76 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.76 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.75 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.75 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.74 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.73 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.72 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.72 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.72 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.72 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.71 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.71 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.71 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.7 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.7 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.7 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.69 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.69 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.69 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.68 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.67 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.67 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.66 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.65 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.65 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.64 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.64 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.64 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.64 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.63 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.63 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.62 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.62 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.62 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.62 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.62 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.62 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.61 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.61 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.61 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.61 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.61 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.6 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.59 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.59 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.59 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.58 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.58 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.58 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.57 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.57 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.56 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.55 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.54 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.54 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.53 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.53 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.53 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.52 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.52 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.51 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.51 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.51 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.51 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.51 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.51 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.5 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.5 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.5 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.5 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.5 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.49 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.49 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.48 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.47 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.47 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.47 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.47 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.46 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.46 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.46 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.46 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.46 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.45 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.45 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.45 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.45 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.44 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.44 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.44 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.44 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.43 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.43 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.42 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.41 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.41 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.41 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.41 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.41 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.41 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.4 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.4 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.39 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.39 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.39 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.39 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.38 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.37 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.37 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.36 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.35 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.34 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.33 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.32 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.31 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.31 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.3 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.27 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.27 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.27 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.26 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.22 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.22 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.22 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.22 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.21 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.19 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.18 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.16 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.14 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.14 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.11 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.09 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.08 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.08 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.08 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.07 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.06 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.04 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.01 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.0 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.0 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.98 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.95 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.94 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.94 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.92 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.89 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.89 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.88 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.86 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.85 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.8 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.73 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.71 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.68 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.66 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.6 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.6 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.59 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.57 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.55 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.51 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.47 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.44 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.42 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.42 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.42 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.39 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.38 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.26 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.18 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.17 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.15 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.1 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.03 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.0 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.81 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.75 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.52 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.43 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.22 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.21 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.01 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.99 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.85 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.85 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.73 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.72 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.63 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.51 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.42 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.35 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.26 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.25 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.17 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.11 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.95 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.94 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.91 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 95.89 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.88 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.77 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.73 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.7 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.68 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.66 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.59 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.57 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.56 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.5 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.34 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.31 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.23 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.23 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.22 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.18 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.16 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.15 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.14 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.05 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.92 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.85 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.81 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.76 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.71 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.7 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.5 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.44 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.39 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.35 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.3 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.28 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.24 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.22 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.19 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.09 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.05 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.01 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.95 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.89 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.85 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.68 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.67 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.67 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.53 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.51 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.49 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 93.3 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.24 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.24 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.23 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 93.22 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.13 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.12 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.97 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.94 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.66 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 92.59 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.54 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.49 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.49 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.48 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.4 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.25 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.09 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.07 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 92.06 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.05 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.02 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.73 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.55 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.51 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.47 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.32 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.42 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 89.47 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.04 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.77 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.65 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 88.64 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.33 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.15 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 88.02 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 87.78 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.67 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 87.66 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 87.33 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.3 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 87.13 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 87.04 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.03 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 87.01 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 86.99 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 86.99 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 86.74 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.95 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 85.74 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 85.67 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.6 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.57 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.49 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 85.25 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.11 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.05 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 84.81 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.8 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.75 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 84.36 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.35 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 84.08 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.02 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 84.01 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 83.96 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 83.67 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 83.5 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 83.24 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.06 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 82.96 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.95 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 82.49 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 82.42 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 82.37 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 82.35 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 82.33 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 82.24 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 82.19 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 82.13 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 81.97 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 81.84 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 81.66 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 81.65 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 81.63 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 81.58 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 81.47 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 81.38 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 81.38 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 81.25 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 81.12 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 81.12 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 81.07 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 80.99 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 80.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.74 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 80.73 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 80.7 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 80.68 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 80.64 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.23 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 80.16 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.05 |
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=175.28 Aligned_cols=176 Identities=23% Similarity=0.254 Sum_probs=137.2
Q ss_pred hhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--
Q 019479 81 RFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-- 158 (340)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-- 158 (340)
+...+.|+...............++..+....++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~ 92 (267)
T 3kkz_A 14 NLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS 92 (267)
T ss_dssp HHHHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 334455554433334445555666666654467899999999999999999998 67899999999999999997732
Q ss_pred --CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC----chhHhhHhhhHhh
Q 019479 159 --LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP----TFWLSRFFADVWM 232 (340)
Q Consensus 159 --~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~~~~~~~~~ 232 (340)
.++++++++|+.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++... .......+...+.
T Consensus 93 ~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (267)
T 3kkz_A 93 GLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYP 171 (267)
T ss_dssp TCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCT
T ss_pred CCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCC
Confidence 256999999999988888999999999999999 899999999999999999999875421 1112222222233
Q ss_pred cCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 233 LFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 233 ~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+.+.+++.++++++||+++++..+.
T Consensus 172 ~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 172 EIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp TCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 46689999999999999999998875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=172.60 Aligned_cols=156 Identities=23% Similarity=0.229 Sum_probs=124.4
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCCCCcc
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPTDYAD 180 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~~~fD 180 (340)
..++..+....++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++... .+++++++|+.++++. ++||
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD 111 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYD 111 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCce
Confidence 3444444434578999999999999999999998889999999999999999988543 3799999999998866 8899
Q ss_pred EEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhH-hhHhhh-----------------------HhhcC
Q 019479 181 RYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWL-SRFFAD-----------------------VWMLF 234 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~-----------------------~~~~~ 234 (340)
+|++..+++|++++. .+++++.++|||||++++.+...+.... ...... .....
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998776 5999999999999999998765543211 111111 11124
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 235 PKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++.+++.++|+++||+++++....
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeee
Confidence 578999999999999999887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-22 Score=174.35 Aligned_cols=162 Identities=18% Similarity=0.235 Sum_probs=134.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~ 176 (340)
......++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++... .+++++++|+.++++++
T Consensus 41 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 41 LEATKKILSDIEL-NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE 118 (266)
T ss_dssp HHHHHHHTTTCCC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCC
Confidence 3455666666654 478899999999999999999986 78999999999999999998654 68999999999988888
Q ss_pred CCccEEEecCccccc--CCHHHHHHHHHHhcccCcEEEEEccCCCc-----hhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 177 DYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPVYPT-----FWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
++||+|++..+++|+ .++..+++++.++|||||++++.++.... .............+.+.+++.++++++||
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNF 198 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTC
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999 78889999999999999999998764433 11222222333346799999999999999
Q ss_pred cEEEEEEeCCcc
Q 019479 250 KDVKLKRIGPKW 261 (340)
Q Consensus 250 ~~v~~~~~~~~~ 261 (340)
+++++..+...+
T Consensus 199 ~~~~~~~~~~~~ 210 (266)
T 3ujc_A 199 KNVVSKDLSDYW 210 (266)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEeCCHHH
Confidence 999998876543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=176.48 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=112.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
+++.+|||||||+|..+..+++.+ ++.+|+|+|+|+.|++.|+++.. ..+++++++|+.++++ +.||+|+++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceee
Confidence 478999999999999999999875 46799999999999999998732 3579999999998875 459999999
Q ss_pred CcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCch-hHhhHhhh------------------------HhhcCCCHH
Q 019479 186 GSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFAD------------------------VWMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~------------------------~~~~~~~~~ 238 (340)
.++||+++.+ .+|++++++|||||++++.+...... ........ ......+.+
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 9999997654 68999999999999999987654321 11111100 011245789
Q ss_pred HHHHHHHHCCCcEEEEE
Q 019479 239 EYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~ 255 (340)
++.++|+++||+.+++.
T Consensus 227 ~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 227 THKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 99999999999988764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=176.58 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=122.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+++++++|+.++++++++||+|++..+++|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 6789999999999999999998 77999999999999999988766889999999999888889999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH-----hhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV-----WMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++..+++++.++|||||++++................. .....+.+++.++++++||++++...+
T Consensus 131 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 131 EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 99999999999999999999987654432222222211 223578999999999999999998765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=172.90 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=129.6
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAE 170 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~ 170 (340)
.........++..+....++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++.. ..+++++++|+.
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD 106 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 334455566666665456788999999999999999999965 499999999999999987632 245999999999
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC----chhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP----TFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 171 ~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
++++++++||+|++..+++|+ ++..+++++.++|||||++++.++... ..............+.+.+++.+++++
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMER 185 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHH
T ss_pred hCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 988888999999999999999 899999999999999999999875321 111222222333346789999999999
Q ss_pred CCCcEEEEEEeC
Q 019479 247 AGFKDVKLKRIG 258 (340)
Q Consensus 247 aGF~~v~~~~~~ 258 (340)
+||++++...+.
T Consensus 186 aGf~~v~~~~~~ 197 (257)
T 3f4k_A 186 AGYTPTAHFILP 197 (257)
T ss_dssp TTEEEEEEEECC
T ss_pred CCCeEEEEEECC
Confidence 999999987765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=174.54 Aligned_cols=141 Identities=19% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... +++++++|++++ .++++||+|++.++++|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD-GITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS-CEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC-CeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 5678999999999999999987 45899999999999999988664 899999999887 4678899999999999999
Q ss_pred CHHHHHHHHH-HhcccCcEEEEEccCCCchhHhhH----------------hhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 193 DPQRGIKEAY-RVLKIGGKACVIGPVYPTFWLSRF----------------FADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 193 d~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
|+..+++++. ++|||||++++..+.......... ....+..+++.+++.++++++||+++++.
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 9999999999 999999999999876543211110 01112235789999999999999999887
Q ss_pred Ee
Q 019479 256 RI 257 (340)
Q Consensus 256 ~~ 257 (340)
.+
T Consensus 198 ~~ 199 (250)
T 2p7i_A 198 GI 199 (250)
T ss_dssp EE
T ss_pred ee
Confidence 65
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=167.39 Aligned_cols=145 Identities=22% Similarity=0.226 Sum_probs=120.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. .+++++++|+.+++++ ++||+|++..+++|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-KEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-TTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-CceEEEeCChhhcCCC-CCeEEEEECcchhcCC
Confidence 6789999999999999999998 7899999999999999999876 6899999999998877 8899999999999999
Q ss_pred CHHH--HHHHHHHhcccCcEEEEEccCCCchhHhhHh--------------hhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 193 DPQR--GIKEAYRVLKIGGKACVIGPVYPTFWLSRFF--------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 193 d~~~--~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
++.. +++++.++|||||++++.++........... ......+.+.+++.++++++||+++....
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 9876 9999999999999999997655432211100 00112356899999999999999887776
Q ss_pred eCCcc
Q 019479 257 IGPKW 261 (340)
Q Consensus 257 ~~~~~ 261 (340)
....|
T Consensus 201 ~~~~w 205 (220)
T 3hnr_A 201 NHFVW 205 (220)
T ss_dssp SSSEE
T ss_pred cceEE
Confidence 65444
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=170.45 Aligned_cols=145 Identities=25% Similarity=0.366 Sum_probs=119.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++. ..++++++++|++++++++++||+|++..++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 113 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence 367899999999999999999884 59999999999999998763 3357999999999999888999999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhhHhhh-------HhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+|++|+..+++++.++|||||++++.+...+.. ....+... .....++.+++.++|+++||+++++....
T Consensus 114 ~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 999999999999999999999999986544322 11111111 11235689999999999999998887764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=173.06 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=126.1
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
+|+..+..|+..... ...+...++..... .++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++.
T Consensus 4 ~y~~~a~~y~~~~~~---~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~- 76 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP---DIRIVNAIINLLNL-PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP- 76 (261)
T ss_dssp ---------CCSBCC---CHHHHHHHHHHHCC-CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-
T ss_pred HHHHHHHHHhhcccc---cHHHHHHHHHHhCC-CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-
Confidence 466666667654332 22344555555443 4788999999999999999998 4789999999999999887654
Q ss_pred CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc---hhHhhH----hhhHh
Q 019479 159 LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT---FWLSRF----FADVW 231 (340)
Q Consensus 159 ~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~----~~~~~ 231 (340)
+++++++|++++++++++||+|++..+++|++|+..+++++.++|| ||++++.+..... .+.... .....
T Consensus 77 --~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (261)
T 3ege_A 77 --QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDAL 153 (261)
T ss_dssp --TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHH
T ss_pred --CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhh
Confidence 8999999999999888999999999999999999999999999999 9988888754321 122121 12223
Q ss_pred hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 232 MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 232 ~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+.+.+++. +|+++||+++++..+.
T Consensus 154 ~~~~~~~~~~-~l~~aGF~~v~~~~~~ 179 (261)
T 3ege_A 154 RFLPLDEQIN-LLQENTKRRVEAIPFL 179 (261)
T ss_dssp TSCCHHHHHH-HHHHHHCSEEEEEECC
T ss_pred hhCCCHHHHH-HHHHcCCCceeEEEec
Confidence 3466788899 9999999999988875
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=170.00 Aligned_cols=141 Identities=16% Similarity=0.052 Sum_probs=118.7
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC-
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP- 192 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 192 (340)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ++++++++|+.++++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH--PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC--TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC--CCCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 789999999999999999998 679999999999999999874 579999999998888889999999999999997
Q ss_pred -CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 193 -DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 193 -d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+...+++++.++|||||++++..+.......... ......+++.+++.++++++||+++++.....
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH-PVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECC-SSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhc-hhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 8889999999999999999998765443100000 00011246899999999999999999988765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=166.45 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=132.7
Q ss_pred HHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q 019479 75 EAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154 (340)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~ 154 (340)
....+|+.....|...... ......++... +++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++
T Consensus 12 ~~~~~~~~~~~~y~~~~~~----~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 82 (211)
T 3e23_A 12 DTLRFYRGNATAYAERQPR----SATLTKFLGEL---PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEAS 82 (211)
T ss_dssp HHHHHHHHSHHHHTTCCCC----CHHHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccch----hHHHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence 3456677777777765443 22334444433 36789999999999999999987 779999999999999999
Q ss_pred HhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhh
Q 019479 155 QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232 (340)
Q Consensus 155 ~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 232 (340)
++. ++.++.+|+.+++ .+++||+|++..+++|++ +...+++++.++|||||++++..+......... .....
T Consensus 83 ~~~---~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~ 156 (211)
T 3e23_A 83 RRL---GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK--LARYY 156 (211)
T ss_dssp HHH---TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT--TSCEE
T ss_pred Hhc---CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc--cchhc
Confidence 875 5778899998888 788899999999999998 677999999999999999999865433211110 11122
Q ss_pred cCCCHHHHHHHHHHCC-CcEEEEEEeCCc
Q 019479 233 LFPKEEEYIEWFQKAG-FKDVKLKRIGPK 260 (340)
Q Consensus 233 ~~~~~~~~~~~l~~aG-F~~v~~~~~~~~ 260 (340)
.+++.+++.++++++| |+++++......
T Consensus 157 ~~~~~~~~~~~l~~aG~f~~~~~~~~~~~ 185 (211)
T 3e23_A 157 NYPSEEWLRARYAEAGTWASVAVESSEGK 185 (211)
T ss_dssp CCCCHHHHHHHHHHHCCCSEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHhCCCcEEEEEEeccCC
Confidence 3579999999999999 999998876543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=169.12 Aligned_cols=160 Identities=24% Similarity=0.258 Sum_probs=128.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~ 174 (340)
.....++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. ..+++++.+|+.++++
T Consensus 48 ~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 48 RLTDEMIALLDV-RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHHHSCC-CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 334455555544 478899999999999999999876 7899999999999999987632 2479999999999988
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch---hHhhHhhh----H-hhcCCCHHHHHHHHHH
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF---WLSRFFAD----V-WMLFPKEEEYIEWFQK 246 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~----~-~~~~~~~~~~~~~l~~ 246 (340)
++++||+|++..+++|++++..+++++.++|||||++++.++..... ........ . ...+.+.+++.+++++
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999987543211 11111111 1 2246789999999999
Q ss_pred CCCcEEEEEEeCCc
Q 019479 247 AGFKDVKLKRIGPK 260 (340)
Q Consensus 247 aGF~~v~~~~~~~~ 260 (340)
+||+++++..+...
T Consensus 206 aGf~~~~~~~~~~~ 219 (273)
T 3bus_A 206 AELVVTSTVDISAQ 219 (273)
T ss_dssp TTCEEEEEEECHHH
T ss_pred cCCeEEEEEECcHh
Confidence 99999999887643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=168.49 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=125.1
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC--CCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL--PFP 175 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~--~~~ 175 (340)
..+...+.......+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ ++++.+|+.+. +++
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----~~~~~~d~~~~~~~~~ 98 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK-----FNVVKSDAIEYLKSLP 98 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT-----SEEECSCHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh-----cceeeccHHHHhhhcC
Confidence 3455555555555567899999999999999999987 67899999999999999954 88999998774 778
Q ss_pred CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHh--hHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 176 TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLS--RFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+++||+|++..+++|++++ ..+++++.++|||||++++..+........ .+.......+.+.+++.++++++||++
T Consensus 99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeE
Confidence 8999999999999999955 899999999999999999988765433221 111112234678999999999999999
Q ss_pred EEEEEeCC
Q 019479 252 VKLKRIGP 259 (340)
Q Consensus 252 v~~~~~~~ 259 (340)
+++....+
T Consensus 179 ~~~~~~~~ 186 (240)
T 3dli_A 179 VKIEFFEE 186 (240)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 99888753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=165.65 Aligned_cols=145 Identities=21% Similarity=0.194 Sum_probs=123.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.++++. ..++++++++|+.++++++++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence 467899999999999999999986 5689999999999999999773 235799999999998888899999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
++|++++..+++++.++|||||++++.+........ .......++.+++.++++++||++++.......
T Consensus 116 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 116 FHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----GPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp GGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----SCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTT
T ss_pred hhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc----CCchhcccCHHHHHHHHHHCCCEEEEEEeeCCc
Confidence 999999999999999999999999998765443211 111223568999999999999999999887653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=165.89 Aligned_cols=143 Identities=20% Similarity=0.144 Sum_probs=114.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++. ...+++++++|+.++ +++++||+|++..+++|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH-GLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG-CCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGS
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc-CCCCeEEEecccccC-CCCCceeEEEEechhhcC
Confidence 46789999999999999999998 78999999999999999983 336899999999887 678899999999999999
Q ss_pred CCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh----H-------------hhcCCCHHHHHHHHHHCCCcEE
Q 019479 192 PDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD----V-------------WMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 192 ~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+++ ..+++++.++|||||++++.+...+.......... . ...+.+.+++.++++++||+++
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 986 78999999999999999999776543322221110 0 1225689999999999999965
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
......
T Consensus 201 ~~~~~~ 206 (218)
T 3ou2_A 201 VDEVHP 206 (218)
T ss_dssp EEEEET
T ss_pred eeeccc
Confidence 555443
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=173.77 Aligned_cols=144 Identities=20% Similarity=0.320 Sum_probs=119.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCC-CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLP-FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~-~~~~~fD~v~~~~~ 187 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++++++++|+.+++ +.+++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4789999999999999999998 78999999999999999987422 57899999998876 67889999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh--------hh---------HhhcCCCHHHHHHHHHHCCCc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF--------AD---------VWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~l~~aGF~ 250 (340)
++|++++..+++++.++|||||++++..+........... .. .+..+++.+++.++++++||+
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 225 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ 225 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence 9999999999999999999999999987654321111110 00 011356899999999999999
Q ss_pred EEEEEEeC
Q 019479 251 DVKLKRIG 258 (340)
Q Consensus 251 ~v~~~~~~ 258 (340)
++++..+.
T Consensus 226 v~~~~~~~ 233 (285)
T 4htf_A 226 IMGKTGVR 233 (285)
T ss_dssp EEEEEEES
T ss_pred eeeeeeEE
Confidence 99998874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=163.50 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=124.1
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~ 174 (340)
.+...++..... +++ +|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++.. ..+++++++|+.++++
T Consensus 31 ~~~~~~~~~~~~-~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 107 (219)
T 3dlc_A 31 IIAENIINRFGI-TAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI 107 (219)
T ss_dssp HHHHHHHHHHCC-CEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS
T ss_pred HHHHHHHHhcCC-CCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC
Confidence 344555554443 234 9999999999999999998 67899999999999999998722 3579999999999888
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh---h-------h---HhhcCCCHHHHH
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF---A-------D---VWMLFPKEEEYI 241 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~-------~---~~~~~~~~~~~~ 241 (340)
++++||+|++..+++|++++..+++++.++|||||++++.+............ . . .....++.+++.
T Consensus 108 ~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
T 3dlc_A 108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQ 187 (219)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHH
T ss_pred CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHH
Confidence 88999999999999999999999999999999999999987554432111110 0 0 111234679999
Q ss_pred HHHHHCCCcEEEEEEeC
Q 019479 242 EWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 242 ~~l~~aGF~~v~~~~~~ 258 (340)
++|+++||+++++....
T Consensus 188 ~~l~~aGf~~v~~~~~~ 204 (219)
T 3dlc_A 188 NVLDEIGISSYEIILGD 204 (219)
T ss_dssp HHHHHHTCSSEEEEEET
T ss_pred HHHHHcCCCeEEEEecC
Confidence 99999999999887664
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=170.62 Aligned_cols=147 Identities=21% Similarity=0.300 Sum_probs=121.2
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
..++.+|||||||+|.++..+++..|+.+|+|+|+|+.+++.++++. ..++++++.+|+.++++++++||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 35789999999999999999999988899999999999999999873 345799999999998888899999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCc-------hhHhhHhh---h----HhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT-------FWLSRFFA---D----VWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~-------~~~~~~~~---~----~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++|++++..+++++.++|||||++++.++.... ........ . ......+.+++.++|+++||++++
T Consensus 115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~ 194 (276)
T 3mgg_A 115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194 (276)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEE
Confidence 999999999999999999999999998754321 11111111 1 111234668899999999999998
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
+...
T Consensus 195 ~~~~ 198 (276)
T 3mgg_A 195 VEPR 198 (276)
T ss_dssp EEEE
T ss_pred EeeE
Confidence 8876
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=168.40 Aligned_cols=160 Identities=17% Similarity=0.123 Sum_probs=126.4
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED 171 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~ 171 (340)
........++..... .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++. . ..+++++++|+.+
T Consensus 20 ~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 20 FTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp CCHHHHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CCHHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 344455555655554 478899999999999999999986 679999999999999998763 2 2479999999998
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh-----HhhhHhhcCCCHHHHHHHHHH
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-----FFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 246 (340)
+++ +++||+|++..+++|++++..+++++.++|||||++++.++......... +.......+.+.+++.+++++
T Consensus 98 ~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (256)
T 1nkv_A 98 YVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDD 176 (256)
T ss_dssp CCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHT
T ss_pred CCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 877 78899999999999999999999999999999999999865332111111 111112246789999999999
Q ss_pred CCCcEEEEEEeC
Q 019479 247 AGFKDVKLKRIG 258 (340)
Q Consensus 247 aGF~~v~~~~~~ 258 (340)
+||+++++....
T Consensus 177 aGf~~~~~~~~~ 188 (256)
T 1nkv_A 177 LGYDVVEMVLAD 188 (256)
T ss_dssp TTBCCCEEEECC
T ss_pred CCCeeEEEEeCC
Confidence 999998876654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=165.06 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=120.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ..++++++++|++++++++++||+|++..++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA 97 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEEccCcCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCch
Confidence 47889999999999999999988 459999999999999998763 2357999999999998888999999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-HhhHhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+|++++..+++++.++|||||++++.+...+... ...+.. ......++.+++.++|+++||+++++....
T Consensus 98 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~ 175 (239)
T 1xxl_A 98 HHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN 175 (239)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence 9999999999999999999999999876544322 221111 111235689999999999999998887763
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=170.41 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=122.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++. ..++++++++|+.++++++++||+|++..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 578899999999999999999986 579999999999999998763 235799999999999988899999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh----HhhHhhhH-hhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW----LSRFFADV-WMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
++|++++..+++++.++|||||++++.++...... ........ ...+.+.+++.++++++||+++++..+..
T Consensus 160 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 236 (297)
T 2o57_A 160 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPD 236 (297)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHH
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECch
Confidence 99999999999999999999999999876443211 11111111 12356899999999999999999988753
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=167.51 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=118.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++....+++++++|+.++++++++||+|++..+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 6789999999999999999987 44 99999999999999999876678999999998888778899999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCc------hh-----------Hh----------hHhh-hHhhcCCCHHHHHHH
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPT------FW-----------LS----------RFFA-DVWMLFPKEEEYIEW 243 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~-----------~~----------~~~~-~~~~~~~~~~~~~~~ 243 (340)
++...+++++.++|||||++++..+.... .+ .. .++. ......++.+++.++
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 200 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNA 200 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHH
T ss_pred chHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHH
Confidence 99999999999999999999987643110 00 00 0000 011123589999999
Q ss_pred HHHCCCcEEEEEEeCC
Q 019479 244 FQKAGFKDVKLKRIGP 259 (340)
Q Consensus 244 l~~aGF~~v~~~~~~~ 259 (340)
|+++||+++++....+
T Consensus 201 l~~aGF~~~~~~~~~~ 216 (243)
T 3bkw_A 201 LIRSGFAIEHVEEFCP 216 (243)
T ss_dssp HHHTTCEEEEEEECCC
T ss_pred HHHcCCEeeeeccCCC
Confidence 9999999999987643
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=168.83 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=126.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~ 177 (340)
..++..+....++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.. ..+++++++|+.+++++++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 3455555534578999999999999999999986 6899999999999999997632 2479999999999888889
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+||+|++..+++|+ ++..+++++.++|||||++++.++..... ............+.+.+++.++++++||++
T Consensus 185 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~ 263 (312)
T 3vc1_A 185 AVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVP 263 (312)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEE
T ss_pred CEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEE
Confidence 99999999999999 69999999999999999999987543321 111111122234678999999999999999
Q ss_pred EEEEEeCC
Q 019479 252 VKLKRIGP 259 (340)
Q Consensus 252 v~~~~~~~ 259 (340)
+++..+..
T Consensus 264 ~~~~~~~~ 271 (312)
T 3vc1_A 264 HTIVDLTP 271 (312)
T ss_dssp EEEEECHH
T ss_pred EEEEeCCH
Confidence 99998864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=167.93 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=119.9
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~~~~~~ 177 (340)
...++.......++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++... .+++++++|+.+++++++
T Consensus 67 ~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 145 (241)
T 2ex4_A 67 LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPD 145 (241)
T ss_dssp HHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSS
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCC
Confidence 33444433323368899999999999999988875 56999999999999999988653 358899999988887777
Q ss_pred CccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh-HhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 178 YADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD-VWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+||+|++..+++|++++. .+++++.++|||||++++.++..... ..+.. .....++.+++.++++++||+++++
T Consensus 146 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 146 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---VILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---EEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---ceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 899999999999998865 89999999999999999987644320 00000 0111347999999999999999998
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 8764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=168.21 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=121.7
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~ 177 (340)
...++.......++.+|||||||+|.++..+++.+|. .+|+|+|+|+.+++.++++.. ..+++++++|+.++++ ++
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~ 88 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-ND 88 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SS
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CC
Confidence 3333433333357899999999999999999999884 899999999999999998732 2379999999998887 46
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC-----Cc-------------hhHhhHhh----hHhhcCC
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY-----PT-------------FWLSRFFA----DVWMLFP 235 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~-----~~-------------~~~~~~~~----~~~~~~~ 235 (340)
+||+|++..+++|++|+..++++++++|||||++++.++.. .. ......+. .....+.
T Consensus 89 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 89999999999999999999999999999999999987761 10 00111111 1112245
Q ss_pred CHHHHHHHHHHCCCcEEEEEEe
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+.+++.++|+++||+++++...
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEc
Confidence 6778999999999999988654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=166.41 Aligned_cols=154 Identities=23% Similarity=0.240 Sum_probs=122.4
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEE
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 183 (340)
+...... .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+++++++|+.++++++++||+|+
T Consensus 36 l~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 113 (253)
T 3g5l_A 36 LKKMLPD-FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVL 113 (253)
T ss_dssp HHTTCCC-CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEE
T ss_pred HHHhhhc-cCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEE
Confidence 3444332 368899999999999999999983 23999999999999999998777789999999999888889999999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch------h------------HhhHhh-----------hHhhcC
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------W------------LSRFFA-----------DVWMLF 234 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~------------~~~~~~-----------~~~~~~ 234 (340)
+..+++|++++..+++++.++|||||++++..+..... + ...++. ......
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (253)
T 3g5l_A 114 SSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYH 193 (253)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEEC
T ss_pred EchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEe
Confidence 99999999999999999999999999999874321100 0 000000 001113
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 235 PKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
++.+++.++|+++||+++++.+..+
T Consensus 194 ~t~~~~~~~l~~aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 194 RTVTTYIQTLLKNGFQINSVIEPEP 218 (253)
T ss_dssp CCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred cCHHHHHHHHHHcCCeeeeeecCCC
Confidence 4899999999999999999987653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=161.07 Aligned_cols=153 Identities=21% Similarity=0.245 Sum_probs=123.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--------CcEEEEcCCCCCCCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECTIIEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--------~i~~~~~d~~~~~~~~~~fD~v~ 183 (340)
+++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++++++|+..+++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 36789999999999999999998 779999999999999999875432 46899999999888889999999
Q ss_pred ecCcccccCCHH---HHHHHHHHhcccCcEEEEEccCCCch--hH-hhHhhh---------------------HhhcCCC
Q 019479 184 SAGSIEYWPDPQ---RGIKEAYRVLKIGGKACVIGPVYPTF--WL-SRFFAD---------------------VWMLFPK 236 (340)
Q Consensus 184 ~~~~l~~~~d~~---~~l~~~~~~LkpgG~l~i~~~~~~~~--~~-~~~~~~---------------------~~~~~~~ 236 (340)
+..+++|++++. .+++++.++|||||++++.++..... .. ...... ....+++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 999999999988 89999999999999999987654311 11 111110 0123668
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCCccccccc
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRGVR 266 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 266 (340)
.+++.++|+++||+++++.........+.+
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~~~~~~~~g~~ 216 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRVKELETRTGNK 216 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEEEECTTSCE
T ss_pred HHHHHHHHHHcCCEEEEEEecceeeccCCc
Confidence 999999999999999999876544333333
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=162.95 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=119.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
....++..+.. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++ .++++++++|+++++ ++++|
T Consensus 21 ~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~d~~~~~-~~~~f 96 (259)
T 2p35_A 21 PARDLLAQVPL-ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--LPNTNFGKADLATWK-PAQKA 96 (259)
T ss_dssp HHHHHHTTCCC-SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--STTSEEEECCTTTCC-CSSCE
T ss_pred HHHHHHHhcCC-CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--CCCcEEEECChhhcC-ccCCc
Confidence 33455555544 467899999999999999999998889999999999999999987 368999999999887 77889
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh----hHhh------------hHhhcCCCHHHHHHH
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS----RFFA------------DVWMLFPKEEEYIEW 243 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~ 243 (340)
|+|+++.+++|++++..+++++.++|||||++++..+........ .... .....+.+.+++.++
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999987543221111 1100 012235789999999
Q ss_pred HHHCCCcEE
Q 019479 244 FQKAGFKDV 252 (340)
Q Consensus 244 l~~aGF~~v 252 (340)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=163.77 Aligned_cols=144 Identities=21% Similarity=0.222 Sum_probs=115.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ..++++++++|++++++++++||+|++..++|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 46889999999999999999987 689999999999999999885 23679999999999888888999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCC-ch---h---HhhHhhhHh------hcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYP-TF---W---LSRFFADVW------MLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~-~~---~---~~~~~~~~~------~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
|++|+..+++++.++|||||++++.-...+ .. + ......... ..+.+.+++.++|+++||+++.+..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 195 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREV 195 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceEEE
Confidence 999999999999999999999988722111 11 1 111111111 1134678999999999999876644
Q ss_pred e
Q 019479 257 I 257 (340)
Q Consensus 257 ~ 257 (340)
.
T Consensus 196 ~ 196 (263)
T 2yqz_A 196 A 196 (263)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=170.72 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=120.8
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~ 178 (340)
.++..... .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++. ..++++++.+|+. .+++. +
T Consensus 160 ~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~ 235 (332)
T 3i53_A 160 GIAAKYDW-AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-G 235 (332)
T ss_dssp TGGGSSCC-GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-S
T ss_pred HHHHhCCC-CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-C
Confidence 33444433 3568999999999999999999999999999999 99999999762 1367999999997 34444 7
Q ss_pred ccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch----hHhh-HhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 179 ADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF----WLSR-FFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
||+|++.+++|+++|. .++|++++++|||||+|++.+...+.. .... .........++.++|.++++++||++
T Consensus 236 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 236 AGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred CcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 9999999999999986 689999999999999999998765532 1110 11111223679999999999999999
Q ss_pred EEEEEeCC
Q 019479 252 VKLKRIGP 259 (340)
Q Consensus 252 v~~~~~~~ 259 (340)
+++.....
T Consensus 316 ~~~~~~~~ 323 (332)
T 3i53_A 316 RAAHPISY 323 (332)
T ss_dssp EEEEECSS
T ss_pred EEEEECCC
Confidence 99987753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-20 Score=164.85 Aligned_cols=155 Identities=25% Similarity=0.270 Sum_probs=123.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~ 177 (340)
..++..+.. .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|+++.. ..+++++++|+.++ ++
T Consensus 62 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~ 136 (302)
T 3hem_A 62 KLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DE 136 (302)
T ss_dssp HHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CC
T ss_pred HHHHHHcCC-CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CC
Confidence 344454443 4788999999999999999999875 899999999999999998732 23799999999876 68
Q ss_pred CccEEEecCcccccCCH---------HHHHHHHHHhcccCcEEEEEccCCCchhHh---------------hHhhhH---
Q 019479 178 YADRYVSAGSIEYWPDP---------QRGIKEAYRVLKIGGKACVIGPVYPTFWLS---------------RFFADV--- 230 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~--- 230 (340)
+||+|++..+++|++|+ ..+++++.++|||||++++.+......... .++...
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC
Confidence 89999999999999775 699999999999999999987665433211 111111
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEeCCcc
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 261 (340)
...+.+.+++.++++++||+++++..++..+
T Consensus 217 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 217 GGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 1135689999999999999999999887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=173.01 Aligned_cols=147 Identities=23% Similarity=0.245 Sum_probs=120.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC-----------CCCCcEEEEcCCCCC------C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----------PLKECTIIEGDAEDL------P 173 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~-----------~~~~i~~~~~d~~~~------~ 173 (340)
.++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. ..++++++++|++++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 368899999999999999999986 6789999999999999999863 236899999999886 8
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------HhhhHhhcCCCHHHHHHHHHHC
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------FFADVWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~a 247 (340)
+++++||+|+++.+++|++|+..+++++.++|||||++++.+.......... ..........+.+++.++|+++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 8889999999999999999999999999999999999999865433211100 1111122356789999999999
Q ss_pred CCcEEEEEEeC
Q 019479 248 GFKDVKLKRIG 258 (340)
Q Consensus 248 GF~~v~~~~~~ 258 (340)
||+++++....
T Consensus 242 GF~~v~~~~~~ 252 (383)
T 4fsd_A 242 GFRDVRLVSVG 252 (383)
T ss_dssp TCCCEEEEEEE
T ss_pred CCceEEEEecc
Confidence 99988776543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=174.63 Aligned_cols=202 Identities=22% Similarity=0.250 Sum_probs=139.2
Q ss_pred CcccccccccCccCcCCchhhhhhhhHHhhhhhhhhh----hhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCcc
Q 019479 49 AKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSI----VYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGT 124 (340)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~ 124 (340)
+.....|.++.++++.+...+...+....+.|-...+ .|...+. .+.......++.......+..+|||||||+
T Consensus 135 ~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~--~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~ 212 (364)
T 3p9c_A 135 KVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMK--NHSIIITKKLLELYHGFEGLGTLVDVGGGV 212 (364)
T ss_dssp HHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHHHHCCTTTTCSEEEEETCTT
T ss_pred HHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHH--HhhHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 4456778888877765554444333322222211111 1211111 011223334444444235678999999999
Q ss_pred chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHH
Q 019479 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAY 202 (340)
Q Consensus 125 G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~ 202 (340)
|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++|++++.+ .+|++++
T Consensus 213 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~ 285 (364)
T 3p9c_A 213 GATVAAIAAHYPTIKGVNFDL-PHVISEAPQF---PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCY 285 (364)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc---CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999 8888877642 689999999987 66654 9999999999997764 8899999
Q ss_pred HhcccCcEEEEEccCCCch------hHhhHhhhH-------hhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 203 RVLKIGGKACVIGPVYPTF------WLSRFFADV-------WMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
++|||||+|++.+...+.. .......+. ....++.++|.++++++||+++++.....
T Consensus 286 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 286 DALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp HHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 9999999999987654421 101011111 11357899999999999999999988753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=175.51 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=139.1
Q ss_pred CcccccccccCccCcCCchhhhhhhhHHhhhhhhh----hhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCcc
Q 019479 49 AKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFL----SIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGT 124 (340)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~ 124 (340)
+.....|..+.++++.+...+...++..++.|-.. ...|...+. .+.......++.......+..+|||||||+
T Consensus 137 ~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~--~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~ 214 (368)
T 3reo_A 137 KVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMS--SNSTITMKKILEMYNGFEGLTTIVDVGGGT 214 (368)
T ss_dssp HHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHHTTCCTTTTCSEEEEETCTT
T ss_pred HHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHH--hhhhhHHHHHHHhcccccCCCEEEEeCCCc
Confidence 44566777777777655444443333222222111 111222111 112223344555554235678999999999
Q ss_pred chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHH
Q 019479 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAY 202 (340)
Q Consensus 125 G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~ 202 (340)
|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++|++++.+ .+|++++
T Consensus 215 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~ 287 (368)
T 3reo_A 215 GAVASMIVAKYPSINAINFDL-PHVIQDAPAF---SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLKNCY 287 (368)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc---CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHHHHH
Confidence 999999999999999999999 9888877643 689999999986 65544 9999999999998775 7899999
Q ss_pred HhcccCcEEEEEccCCCchh-------HhhHhh--hH----hhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 203 RVLKIGGKACVIGPVYPTFW-------LSRFFA--DV----WMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~~-------~~~~~~--~~----~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++|||||+|++.+...+... ...... .. ....++.++|.++|+++||+++++....
T Consensus 288 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 288 AALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCA 356 (368)
T ss_dssp HHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeC
Confidence 99999999999886543211 001111 11 1235789999999999999999998875
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=162.58 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++ ++.+|+|+|+|+.+++.++++. ++++++++|++++++ +++||+|++..+++|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY--PHLHFDVADARNFRV-DKPLDAVFSNAMLHWV 130 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC--TTSCEEECCTTTCCC-SSCEEEEEEESCGGGC
T ss_pred CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC--CCCEEEECChhhCCc-CCCcCEEEEcchhhhC
Confidence 3678999999999999999998 5889999999999999999876 679999999998886 5789999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhhH----hhhH---------hhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRF----FADV---------WMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~----~~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+|+..+++++.++|||||++++..+..... ..... .... ...+.+.+++.++|+++||+++++...
T Consensus 131 ~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 131 KEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence 999999999999999999999987654321 11111 1111 012568999999999999999888766
Q ss_pred C
Q 019479 258 G 258 (340)
Q Consensus 258 ~ 258 (340)
.
T Consensus 211 ~ 211 (279)
T 3ccf_A 211 N 211 (279)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=164.74 Aligned_cols=142 Identities=20% Similarity=0.102 Sum_probs=112.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecC-ccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAG-SIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 189 (340)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++... .+++++++|+.+++++ ++||+|++.. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 6789999999999999999988 67999999999999999977321 2789999999888766 7899999998 999
Q ss_pred cc---CCHHHHHHHHHHhcccCcEEEEEccCCCchh-------------------Hhh----------------------
Q 019479 190 YW---PDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-------------------LSR---------------------- 225 (340)
Q Consensus 190 ~~---~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-------------------~~~---------------------- 225 (340)
|+ .+...+++++.++|||||++++..+...... ...
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 99 4567899999999999999998643321000 000
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
........+++.+++.++|+++||+++++...
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 00001124669999999999999999988654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=167.54 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=110.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecC-ccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAG-SIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 191 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++++++|+.++++ +++||+|++.. +++|+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP--DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT--TSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence 5789999999999999999987 5799999999999999998864 79999999998876 77899999998 99999
Q ss_pred C---CHHHHHHHHHHhcccCcEEEEEccCCCchhHhh--------------------------------H----------
Q 019479 192 P---DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR--------------------------------F---------- 226 (340)
Q Consensus 192 ~---d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------------------------------~---------- 226 (340)
. +...+++++.++|||||++++.....+...... +
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 6 445889999999999999999643222110000 0
Q ss_pred --hhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 227 --FADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 227 --~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.......+++.+++.++|+++||+++++.
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~ 235 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMP 235 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEES
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEee
Confidence 00001235789999999999999988773
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=168.77 Aligned_cols=146 Identities=21% Similarity=0.217 Sum_probs=117.6
Q ss_pred CCCCEEEEEcCccchHHHHHH-HhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||||||+|.++..++ ...++.+|+|+|+|+.+++.++++... .+++++++|+.+++++ ++||+|+++.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 478899999999999999986 456789999999999999999987442 3489999999998876 8899999999
Q ss_pred cccccCCHHH---HHHHHHHhcccCcEEEEEccCCCch------hHh-h-----------Hhhh----HhhcCCCHHHHH
Q 019479 187 SIEYWPDPQR---GIKEAYRVLKIGGKACVIGPVYPTF------WLS-R-----------FFAD----VWMLFPKEEEYI 241 (340)
Q Consensus 187 ~l~~~~d~~~---~l~~~~~~LkpgG~l~i~~~~~~~~------~~~-~-----------~~~~----~~~~~~~~~~~~ 241 (340)
+++|++++.. +++++.++|||||++++.+...+.. |.. . .+.. .+..+++.+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 9999998875 7999999999999999987543211 000 0 0011 111357899999
Q ss_pred HHHHHCCCcEEEEEEeC
Q 019479 242 EWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 242 ~~l~~aGF~~v~~~~~~ 258 (340)
++|+++||+++++....
T Consensus 276 ~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHTTCEEEEEECCT
T ss_pred HHHHHCCCEEEEEEccc
Confidence 99999999999988743
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=168.61 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=107.2
Q ss_pred CCCCEEEEEcCccchHHHH----HHHhCCCceE--EEEeCCHHHHHHHHHhCC----CCCcEE--EEcCCCCCC------
Q 019479 112 DRNMRVVDVGGGTGFTTLG----IVKHVDAKNV--TILDQSPHQLAKAKQKEP----LKECTI--IEGDAEDLP------ 173 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~----l~~~~~~~~v--~g~D~s~~~~~~a~~~~~----~~~i~~--~~~d~~~~~------ 173 (340)
.++.+|||||||+|..+.. ++..+++..| +|+|+|+.|++.|+++.. .+++.+ ..+++++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4677999999999976553 3444466654 999999999999998732 235554 455554432
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH--------hhcCCCHHHHHHHHH
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV--------WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~ 245 (340)
+++++||+|++..++||++|+..+|++++++|||||++++........+.. ..... ...+.+.+++.++|+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDK-LWKKYGSRFPQDDLCQYITSDDLTQMLD 209 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHH-HHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHH-HHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence 457889999999999999999999999999999999999986554332221 11111 123678999999999
Q ss_pred HCCCcEEEEEE
Q 019479 246 KAGFKDVKLKR 256 (340)
Q Consensus 246 ~aGF~~v~~~~ 256 (340)
++||+++....
T Consensus 210 ~aGf~~~~~~~ 220 (292)
T 2aot_A 210 NLGLKYECYDL 220 (292)
T ss_dssp HHTCCEEEEEE
T ss_pred HCCCceEEEEe
Confidence 99999876433
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-20 Score=156.02 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=108.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|||+|||+|.++..+ +. +++|+|+|+.+++.++++. .+++++++|+.++++++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA--PEATWVRAWGEALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC--TTSEEECCCTTSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcccccCCCCCCcEEEEEEcChhhhc
Confidence 6789999999999998876 44 9999999999999999887 67899999999988888899999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhh--------hHhhcCCCHHHHHHHHHHCC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA--------DVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~aG 248 (340)
+++..+++++.++|||||++++..+.....+...... .....+++.+++.++|+ |
T Consensus 109 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 109 EDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999999999999999999987765443322111 01234679999999999 7
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=160.48 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---------------CCCcEEEEcCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---------------~~~i~~~~~d~~~~~~~~ 176 (340)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.. ..+++++++|+.++++.+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 36789999999999999999998 7899999999999999998743 358999999999988665
Q ss_pred -CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 177 -DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 177 -~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++||+|++..+++++++. ..++++++++|||||++++......... .... ....+.+++.+++++ ||+++.
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~---~~~~--~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL---LEGP--PFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS---SSSC--CCCCCHHHHHHTSCS-SEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc---cCCC--CCCCCHHHHHHHhcC-CcEEEE
Confidence 789999999999998644 4689999999999999544432221110 0000 112578999999998 999888
Q ss_pred EEEeC
Q 019479 254 LKRIG 258 (340)
Q Consensus 254 ~~~~~ 258 (340)
+....
T Consensus 173 ~~~~~ 177 (203)
T 1pjz_A 173 VGGQD 177 (203)
T ss_dssp EEESS
T ss_pred ecccc
Confidence 77764
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=173.34 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=121.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~ 177 (340)
..++..... .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. .++++++.+|+. .+++.
T Consensus 192 ~~l~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~- 267 (369)
T 3gwz_A 192 GQVAAAYDF-SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD- 267 (369)
T ss_dssp HHHHHHSCC-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred HHHHHhCCC-ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence 344444443 4678999999999999999999999999999999 999999997632 367999999998 35555
Q ss_pred CccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchh--HhhHhh-----hHhhcCCCHHHHHHHHHHCC
Q 019479 178 YADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFW--LSRFFA-----DVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~l~~aG 248 (340)
.||+|++.+++|++++.. .+|++++++|||||++++.+...+... ...... ......++.++|.++++++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence 799999999999998886 799999999999999999876554311 111111 11123578999999999999
Q ss_pred CcEEEEEEe
Q 019479 249 FKDVKLKRI 257 (340)
Q Consensus 249 F~~v~~~~~ 257 (340)
|+++++...
T Consensus 348 f~~~~~~~~ 356 (369)
T 3gwz_A 348 LRVERSLPC 356 (369)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 999999874
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=162.04 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=120.3
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCCCCccE
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
.++..+.. .++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++... .+++++++|+.++++++++||+
T Consensus 84 ~~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 84 NFIASLPG-HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence 34444432 468899999999999999998874 56899999999999999988543 5799999999988888889999
Q ss_pred EEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchh-HhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 182 YVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 182 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
|++..+++|++ +...+++++.++|||||++++.++...... ... .......++.+++.++|+++||+++++....
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD--KEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE--TTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec--ccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 99999999995 467999999999999999999875332110 000 0011124589999999999999999887764
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=157.47 Aligned_cols=135 Identities=27% Similarity=0.370 Sum_probs=113.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+.+|||||||+|.++..+++. +|+|+|+.+++.++++ +++++++|+.++++++++||+|++..+++|+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----CCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence 789999999999999887653 9999999999999976 789999999988888889999999999999999
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh-------HhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+..+++++.++|||||++++..+.....+...+... ....+++.+++.++|+++||+++++....
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 999999999999999999998776543322211110 01235689999999999999999887763
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-19 Score=157.76 Aligned_cols=155 Identities=23% Similarity=0.203 Sum_probs=122.2
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
...++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. ..+++++.+|+.+++
T Consensus 53 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 53 IDLALGKLGL-QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 3444555544 478899999999999999999765 5699999999999999998732 257999999998765
Q ss_pred CCccEEEecCccccc--CCHHHHHHHHHHhcccCcEEEEEccCCCchhH---------------hhHhhhH---hhcCCC
Q 019479 177 DYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL---------------SRFFADV---WMLFPK 236 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~~~~---~~~~~~ 236 (340)
++||+|++..+++|+ .+...+++++.++|||||++++.++....... ..++... ...+++
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 789999999999999 67889999999999999999998765443211 0011111 112468
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
.+++.++++++||+++++..+...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~~~~ 231 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSLQPH 231 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHhCCcEEEEEEeCcHh
Confidence 999999999999999999887654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=168.55 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=121.8
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~~~~~~ 178 (340)
..++..... ....+|||||||+|.++..+++++|+.+++..|+ |.+++.|+++.. .++++++.+|+.+.+. ..
T Consensus 169 ~~~~~~~~~-~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~--~~ 244 (353)
T 4a6d_A 169 RSVLTAFDL-SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL--PE 244 (353)
T ss_dssp HHHHHSSCG-GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCC--CC
T ss_pred HHHHHhcCc-ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCC--CC
Confidence 344444443 4678999999999999999999999999999999 999999998743 3689999999976543 34
Q ss_pred ccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCch----hHhhHhhh-Hh----hcCCCHHHHHHHHHHC
Q 019479 179 ADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTF----WLSRFFAD-VW----MLFPKEEEYIEWFQKA 247 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~-~~----~~~~~~~~~~~~l~~a 247 (340)
+|+|++.+++|+++|.+ .+|++++++|+|||+++|.+...+.. .....+.- +. -..+|.++|.++|+++
T Consensus 245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC
Confidence 79999999999999885 78999999999999999998654421 22222111 11 1257999999999999
Q ss_pred CCcEEEEEEeC
Q 019479 248 GFKDVKLKRIG 258 (340)
Q Consensus 248 GF~~v~~~~~~ 258 (340)
||+++++...+
T Consensus 325 Gf~~v~v~~~~ 335 (353)
T 4a6d_A 325 GFRDFQFKKTG 335 (353)
T ss_dssp TCEEEEEECCS
T ss_pred CCceEEEEEcC
Confidence 99999988765
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-20 Score=158.15 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=111.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC---CCCC-CCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL---PFPT-DYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~---~~~~-~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+..+|+.++ ++.. .+||+|++..++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA---GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT---CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh---cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 5689999999999999999988 77999999999999999987 5678888888665 4444 459999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH--------h-------hhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF--------F-------ADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+ ..++..+++++.++|||||++++.++.........+ + ......+++.+++.++|+++||++++
T Consensus 127 ~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 127 L-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp C-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred h-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 9 889999999999999999999998765432211100 0 01111245899999999999999998
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
+...
T Consensus 206 ~~~~ 209 (227)
T 3e8s_A 206 LQEP 209 (227)
T ss_dssp EECC
T ss_pred EecC
Confidence 8773
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=151.18 Aligned_cols=136 Identities=22% Similarity=0.282 Sum_probs=115.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.++++ .+++++..+| .++++++||+|++..+++|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK--FDSVITLSDP---KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH--CTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh--CCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence 367899999999999999999984 4999999999999999988 4689999999 56678899999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+++..+++++.++|||||++++.+......... ......++.+++.++++ ||++++.....+.
T Consensus 89 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~ 151 (170)
T 3i9f_A 89 DDKQHVISEVKRILKDDGRVIIIDWRKENTGIG----PPLSIRMDEKDYMGWFS--NFVVEKRFNPTPY 151 (170)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----SCGGGCCCHHHHHHHTT--TEEEEEEECSSTT
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEEcCccccccC----chHhhhcCHHHHHHHHh--CcEEEEccCCCCc
Confidence 999999999999999999999987654422111 11223568999999999 9999999888643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=164.13 Aligned_cols=145 Identities=18% Similarity=0.249 Sum_probs=112.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---------------------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------------------- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------------------------------- 159 (340)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.|+++...
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 67899999999999999999999889999999999999999987431
Q ss_pred ----------------------------CCcEEEEcCCCCCC-----CCCCCccEEEecCcccccC------CHHHHHHH
Q 019479 160 ----------------------------KECTIIEGDAEDLP-----FPTDYADRYVSAGSIEYWP------DPQRGIKE 200 (340)
Q Consensus 160 ----------------------------~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~------d~~~~l~~ 200 (340)
.+++|+++|+...+ +.+++||+|++..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999997543 4678899999999997774 56689999
Q ss_pred HHHhcccCcEEEEEccCCCchhH-----hhHhhhHhhcCCCHHHHHHHHHH--CCCcEEEEEEe
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWL-----SRFFADVWMLFPKEEEYIEWFQK--AGFKDVKLKRI 257 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~--aGF~~v~~~~~ 257 (340)
++++|||||+|++.......+.. .............++++.++|.+ +||+.+++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999987543221111 11112222234468899999999 99998887665
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=156.31 Aligned_cols=139 Identities=19% Similarity=0.092 Sum_probs=115.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ ++++||+|++..++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFF 142 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESST
T ss_pred CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhh
Confidence 3459999999999999998774 78999999999999999988543 46999999998876 45689999999999
Q ss_pred cccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 189 EYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 189 ~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
++++ +...+++++.++|||||++++........... .....+.+++.++|+++||+++++......
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 210 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG------PPYKVDVSTFEEVLVPIGFKAVSVEENPHA 210 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC------SSCCCCHHHHHHHHGGGTEEEEEEEECTTC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC------CCccCCHHHHHHHHHHcCCeEEEEEecCCc
Confidence 9998 77899999999999999999876544321100 111358999999999999999999887643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=154.98 Aligned_cols=140 Identities=12% Similarity=0.012 Sum_probs=108.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------CCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++... .+++++++|+...+...++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 67899999999999999999987668999999999999999987431 2799999999877777789999999
Q ss_pred cCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhH-----hhHhhhHhhcCCCHHHHH----HHHHHCCCcEE
Q 019479 185 AGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWL-----SRFFADVWMLFPKEEEYI----EWFQKAGFKDV 252 (340)
Q Consensus 185 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v 252 (340)
..+++|++++ ..+++++.++|||||.+++.......... .......+....+.+++. ++++++||+++
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 109 IEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence 9999999866 79999999999999977665431100000 001111122245888888 88999999864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=168.35 Aligned_cols=143 Identities=16% Similarity=0.212 Sum_probs=115.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCC--CCCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDL--PFPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~--~~~~~~fD~v~~~~ 186 (340)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++... ++++++.+|+.+. |++ ++||+|++..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 568999999999999999999999999999999 9999999987432 4799999999875 455 6799999999
Q ss_pred cccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhh------Hh-hhH------hhcCCCHHHHHHHHHHCCCcE
Q 019479 187 SIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSR------FF-ADV------WMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 187 ~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~-~~~------~~~~~~~~~~~~~l~~aGF~~ 251 (340)
++|++++.+ .+|++++++|||||+|++.+...+...... .. ..+ ....++.++|.++|+++||++
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 999998774 789999999999999999886554321110 00 000 112568999999999999999
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
+++...
T Consensus 337 v~~~~~ 342 (363)
T 3dp7_A 337 EEIQDN 342 (363)
T ss_dssp SCCCCC
T ss_pred EEEEeC
Confidence 887654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=154.95 Aligned_cols=144 Identities=14% Similarity=-0.003 Sum_probs=114.9
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCC-----CCccEEEec
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT-----DYADRYVSA 185 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~-----~~fD~v~~~ 185 (340)
..++.+|||||||+|.++..+++.. .+|+|+|+|+.+++.++++....+++++++|+.+++... ..||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 3578899999999999999999984 499999999999999999887678999999998754322 248999999
Q ss_pred CcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhh-----------hHh-----hcCCCHHHHHHHHHHC
Q 019479 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA-----------DVW-----MLFPKEEEYIEWFQKA 247 (340)
Q Consensus 186 ~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~l~~a 247 (340)
.++||++ +...+++++.++|||||++++.+............. ... ....+.+++.+++ +
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a 209 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--P 209 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--T
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--C
Confidence 9999998 778999999999999999999887655322111000 000 1135889999999 9
Q ss_pred CCcEEEEEEeC
Q 019479 248 GFKDVKLKRIG 258 (340)
Q Consensus 248 GF~~v~~~~~~ 258 (340)
||++++...+.
T Consensus 210 Gf~~~~~~~~~ 220 (245)
T 3ggd_A 210 DFEILSQGEGL 220 (245)
T ss_dssp TEEEEEEECCB
T ss_pred CCEEEeccccc
Confidence 99998877664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=160.19 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=123.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~ 175 (340)
....++..+.. .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. .++++++.+|+.+++
T Consensus 78 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 78 KVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHhcCC-CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 33445555544 478899999999999999999886 6799999999999999998732 246999999998764
Q ss_pred CCCccEEEecCccccc--CCHHHHHHHHHHhcccCcEEEEEccCCCchhHh---------------hHhhhH---hhcCC
Q 019479 176 TDYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS---------------RFFADV---WMLFP 235 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~---~~~~~ 235 (340)
++||+|++..+++|+ ++...+++++.++|||||++++.++........ .++... ...+.
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 232 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence 779999999999999 677899999999999999999988765542211 111111 12356
Q ss_pred CHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+.+++.++++++||+++++..++..
T Consensus 233 s~~~~~~~l~~aGf~~~~~~~~~~~ 257 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPLSLRPH 257 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecchh
Confidence 8999999999999999998887643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=159.87 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=97.3
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC
Q 019479 80 YRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~ 159 (340)
|+..++.|+.. .+. +...+.+.+..... .+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++ .
T Consensus 11 F~~~a~~Y~~~-Rp~-yp~~l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~---~ 80 (257)
T 4hg2_A 11 FTPVADAYRAF-RPR-YPRALFRWLGEVAP---ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR---H 80 (257)
T ss_dssp ---------CC-CCC-CCHHHHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC---C
T ss_pred HHHHHHHHHHH-CCC-cHHHHHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh---c
Confidence 34445555542 222 22334444444332 4679999999999999999987 6799999999999988864 3
Q ss_pred CCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 160 ~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++++++++|++++++++++||+|++..++|++ ++..+++++.|+|||||+|++.....
T Consensus 81 ~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 78999999999999999999999999999877 68899999999999999998886543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=154.00 Aligned_cols=145 Identities=17% Similarity=0.099 Sum_probs=110.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------CCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++... .+++++++|+...+..+++||+|++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 108 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence 67899999999999999999987668999999999999999987432 2799999999887777789999999
Q ss_pred cCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch-----hHhhHhhhHhhcCCCHHHHH----HHHHHCCCcEEE
Q 019479 185 AGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF-----WLSRFFADVWMLFPKEEEYI----EWFQKAGFKDVK 253 (340)
Q Consensus 185 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v~ 253 (340)
..+++|++++ ..+++++.++|||||.++......... .........+....+.+++. ++++++||++.
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~- 187 (219)
T 3jwg_A 109 IEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR- 187 (219)
T ss_dssp ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE-
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE-
Confidence 9999999866 689999999999999665553221100 00011111122245888888 78999999754
Q ss_pred EEEeC
Q 019479 254 LKRIG 258 (340)
Q Consensus 254 ~~~~~ 258 (340)
...++
T Consensus 188 ~~~~g 192 (219)
T 3jwg_A 188 FLQIG 192 (219)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 44443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=161.67 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=121.1
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
...++..... .+ .+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. .++++++.+|+.+ +++
T Consensus 157 ~~~~~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 157 FHEIPRLLDF-RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHHSCC-TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHHhCCC-CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 3444444444 34 8999999999999999999999999999999 999999998743 2579999999977 544
Q ss_pred CCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCc---hhHhhHhhh-----HhhcCCCHHHHHHHHHH
Q 019479 177 DYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPT---FWLSRFFAD-----VWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~l~~ 246 (340)
++||+|++..++|++++.. .++++++++|||||++++.+...+. ......+.. .....++.++|.+++++
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence 5799999999999998876 8999999999999999999765432 111111110 11235689999999999
Q ss_pred CCCcEEEEEEeC
Q 019479 247 AGFKDVKLKRIG 258 (340)
Q Consensus 247 aGF~~v~~~~~~ 258 (340)
+||+++++....
T Consensus 312 aGf~~~~~~~~~ 323 (334)
T 2ip2_A 312 GGFAVERIVDLP 323 (334)
T ss_dssp TTEEEEEEEEET
T ss_pred CCCceeEEEECC
Confidence 999999988764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=167.21 Aligned_cols=147 Identities=23% Similarity=0.268 Sum_probs=112.9
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCc
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~f 179 (340)
++..... .++.+|||||||+|.++..+++.+|+.+++++|+ +.++. +++.. .++++++.+|+. .+++ +|
T Consensus 176 ~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~ 248 (348)
T 3lst_A 176 LARAGDF-PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HA 248 (348)
T ss_dssp HHHHSCC-CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CC
T ss_pred HHHhCCc-cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC--CC
Confidence 3444443 4678999999999999999999999999999999 55555 32221 257999999996 3444 79
Q ss_pred cEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch---hHhhHhh-----hHhhcCCCHHHHHHHHHHCCC
Q 019479 180 DRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF---WLSRFFA-----DVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 180 D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF 249 (340)
|+|++..++|+++|. ..+|++++++|||||+|++.+...+.. ....... ......++.++|.++++++||
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 328 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGL 328 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTE
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCC
Confidence 999999999999988 599999999999999999987654421 1111111 111225789999999999999
Q ss_pred cEEEEEEe
Q 019479 250 KDVKLKRI 257 (340)
Q Consensus 250 ~~v~~~~~ 257 (340)
+++++...
T Consensus 329 ~~~~~~~~ 336 (348)
T 3lst_A 329 RLDRVVGT 336 (348)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEC
Confidence 99998873
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-20 Score=158.62 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEe-cCcccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVS-AGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~-~~~l~~ 190 (340)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++. ++++++++|+.++++ +++||+|++ ..+++|
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~--~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL--PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC--TTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC--CCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 367899999999999999999984 49999999999999999875 568999999988876 678999995 559999
Q ss_pred cCC---HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 191 WPD---PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 191 ~~d---~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+.+ ...+++++.++|||||++++.+...
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 954 3589999999999999999986543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=149.56 Aligned_cols=141 Identities=22% Similarity=0.290 Sum_probs=116.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--CCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--LPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .+++.+|+.+ .++++++||+|++..+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL----DHVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS----SEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC----CcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 46789999999999999999988 589999999999999999654 3788999976 566778999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH-hhHhhh------------HhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-SRFFAD------------VWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
|++++..+++++.++|||||++++..+....... ...... ....+++.+++.++++++||+++++..
T Consensus 105 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 105 HLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp GSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 9999999999999999999999998766543211 111111 112356899999999999999999888
Q ss_pred eC
Q 019479 257 IG 258 (340)
Q Consensus 257 ~~ 258 (340)
+.
T Consensus 185 ~~ 186 (230)
T 3cc8_A 185 VY 186 (230)
T ss_dssp EE
T ss_pred cc
Confidence 75
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-20 Score=171.82 Aligned_cols=149 Identities=20% Similarity=0.249 Sum_probs=117.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
..++.......++.+|||||||+|.++..+++++|..+++++|+ +.+++.+++. ++++++.+|+.+ +++. ||+
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~--~D~ 270 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---SGIEHVGGDMFA-SVPQ--GDA 270 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---TTEEEEECCTTT-CCCC--EEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---CCCEEEeCCccc-CCCC--CCE
Confidence 34444443234678999999999999999999999999999999 9999887642 679999999977 5554 999
Q ss_pred EEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchh-------HhhHhhh-----HhhcCCCHHHHHHHHHHC
Q 019479 182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFW-------LSRFFAD-----VWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 182 v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~l~~a 247 (340)
|++..++||++|.. .+|++++++|||||++++.+...+... ....... .....++.++|.++++++
T Consensus 271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 350 (372)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHC
Confidence 99999999999887 999999999999999999865432110 1111111 112356899999999999
Q ss_pred CCcEEEEEEe
Q 019479 248 GFKDVKLKRI 257 (340)
Q Consensus 248 GF~~v~~~~~ 257 (340)
||+++++...
T Consensus 351 Gf~~~~~~~~ 360 (372)
T 1fp1_D 351 GFSKFQVACR 360 (372)
T ss_dssp TCSEEEEEEE
T ss_pred CCceEEEEEc
Confidence 9999998875
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=151.28 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=115.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++.....+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 45 9999999999999999887 6799999999999999997742 13789999999888877889999999643222
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccccccccc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHG 269 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~ 269 (340)
..+...+++++.++|||||++++..+.................+++.+++.++++ ||+++++.........+....+
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~ 183 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQG 183 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCccc
Confidence 2456789999999999999999987665433211000111223679999999999 9999999887655444443333
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=167.85 Aligned_cols=145 Identities=21% Similarity=0.270 Sum_probs=115.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++. . ..+++++.+|+.+ +++. .||+|++..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 4678999999999999999999998899999999 99999999763 2 2479999999975 3443 3999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEcc--CCCch---hHhhHhhhH-----hhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGP--VYPTF---WLSRFFADV-----WMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~--~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+|++++.. .+++++.++|||||++++.+. ..+.. ......... ....++.++|.++++++||+++++.
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 337 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 337 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 99998875 899999999999999999887 43321 111111111 1235799999999999999999998
Q ss_pred EeCC
Q 019479 256 RIGP 259 (340)
Q Consensus 256 ~~~~ 259 (340)
....
T Consensus 338 ~~~~ 341 (374)
T 1qzz_A 338 TSGS 341 (374)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-19 Score=154.85 Aligned_cols=139 Identities=13% Similarity=0.026 Sum_probs=110.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------------------CCCcEEEEcCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECTIIEGDAED 171 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------------------~~~i~~~~~d~~~ 171 (340)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 36789999999999999999998 7899999999999999987643 2579999999998
Q ss_pred CCCCC-CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC
Q 019479 172 LPFPT-DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 172 ~~~~~-~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 248 (340)
++..+ ++||+|++..+++++++. ..+++++.++|||||+++++......... ... ....+.+++.++++. +
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~---~g~--~~~~~~~el~~~l~~-~ 218 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH---AGP--PFYVPSAELKRLFGT-K 218 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC---CCS--SCCCCHHHHHHHHTT-T
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC---CCC--CCCCCHHHHHHHhhC-C
Confidence 87654 789999999999998643 57899999999999999755432211100 000 112588999999987 5
Q ss_pred CcEEEEEEeC
Q 019479 249 FKDVKLKRIG 258 (340)
Q Consensus 249 F~~v~~~~~~ 258 (340)
|+++......
T Consensus 219 f~v~~~~~~~ 228 (252)
T 2gb4_A 219 CSMQCLEEVD 228 (252)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEeccc
Confidence 9988887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=163.13 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=116.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAEDLP 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~~~ 173 (340)
....++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .+++++++|+.+++
T Consensus 71 ~~~~~~~~~~~--~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTGP--VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHCC--CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhCC--CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 33444444432 4459999999999999999988 68999999999999999987443 57999999999988
Q ss_pred CCCCCccEEEec-CcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHh------hH---------h--------
Q 019479 174 FPTDYADRYVSA-GSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------RF---------F-------- 227 (340)
Q Consensus 174 ~~~~~fD~v~~~-~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~---------~-------- 227 (340)
+ +++||+|++. .+++++++ ...+++++.++|||||+|++..+........ .+ .
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 6 6789999865 56666653 4689999999999999999986554321000 00 0
Q ss_pred -------------------hhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 228 -------------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 228 -------------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
......+++.+++.++|+++||+++++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0001124589999999999999999999886
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=159.39 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=117.8
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-CCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-FPTD 177 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-~~~~ 177 (340)
.++......+.+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++.. .++++++.+|+.+.+ +..+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence 4455554433378999999999999999999999999999999 889999987622 246999999998754 1345
Q ss_pred CccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch----hHhhHhhh--H----hhcCCCHHHHHHHHH
Q 019479 178 YADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF----WLSRFFAD--V----WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~--~----~~~~~~~~~~~~~l~ 245 (340)
.||+|++..++|++++. ..++++++++|||||++++.+...+.. ........ . ....++.++|.++++
T Consensus 248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 327 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVR 327 (352)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHH
T ss_pred CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHH
Confidence 69999999999999876 689999999999999999987654321 11111110 0 123678999999999
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
++||++++.
T Consensus 328 ~aGf~~~~~ 336 (352)
T 3mcz_A 328 DAGLAVGER 336 (352)
T ss_dssp HTTCEEEEE
T ss_pred HCCCceeee
Confidence 999999884
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=153.41 Aligned_cols=171 Identities=26% Similarity=0.386 Sum_probs=122.0
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
.|+..++.|+..+....+ ......+.... +++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++..
T Consensus 3 ~y~~~a~~yd~~~~~~~~-~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~ 75 (243)
T 3d2l_A 3 AYEQFAYVYDELMQDVPY-PEWVAWVLEQV---EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAM 75 (243)
T ss_dssp ---CTTHHHHHHTTTCCH-HHHHHHHHHHS---CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhcccH-HHHHHHHHHHc---CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhh
Confidence 456666777765544333 23344444433 35689999999999999998876 799999999999999998732
Q ss_pred --CCCcEEEEcCCCCCCCCCCCccEEEecC-cccccC---CHHHHHHHHHHhcccCcEEEEEccCCCch-----------
Q 019479 159 --LKECTIIEGDAEDLPFPTDYADRYVSAG-SIEYWP---DPQRGIKEAYRVLKIGGKACVIGPVYPTF----------- 221 (340)
Q Consensus 159 --~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~---d~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------- 221 (340)
..+++++++|+.+++++ ++||+|++.. +++|+. +...+++++.++|||||++++..+.....
T Consensus 76 ~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 154 (243)
T 3d2l_A 76 ETNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYAT 154 (243)
T ss_dssp HTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEE
T ss_pred hcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeE
Confidence 25789999999887765 7899999986 999984 44588999999999999998853321100
Q ss_pred --------hHh-------------hHh----h--------hHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 222 --------WLS-------------RFF----A--------DVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 222 --------~~~-------------~~~----~--------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|.. .++ . .....+++.+++.++|+++||+++++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 223 (243)
T 3d2l_A 155 HAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD 223 (243)
T ss_dssp ECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred ECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence 000 000 0 00123579999999999999999888653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=156.70 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHH------HHHHHHHhCCC----CCcEEEEcC---
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPH------QLAKAKQKEPL----KECTIIEGD--- 168 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~------~~~~a~~~~~~----~~i~~~~~d--- 168 (340)
.++..+.. .++.+|||||||+|.++..+++.+ |..+|+|+|+|+. +++.++++... ++++++.+|
T Consensus 34 ~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 33443333 478899999999999999999986 5589999999997 89999877422 579999998
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh---Hhh----Hhhh-----------H
Q 019479 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW---LSR----FFAD-----------V 230 (340)
Q Consensus 169 ~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~----~~~~-----------~ 230 (340)
...+++++++||+|++..+++|++++..+++.+.++++|||++++.+....... ... .... .
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVAN 192 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCS
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccccc
Confidence 344566778999999999999999999877777778888999999875543211 000 1110 0
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
...+++.+++.++++++||+++++..+
T Consensus 193 ~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 193 IRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 113578999999999999999887766
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-19 Score=156.71 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=114.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC------------------------------
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------ 161 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~------------------------------ 161 (340)
.++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++....+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3678999999999999998887732 499999999999999988754332
Q ss_pred --c-EEEEcCCCCCC-CCC---CCccEEEecCccc----ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH
Q 019479 162 --C-TIIEGDAEDLP-FPT---DYADRYVSAGSIE----YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230 (340)
Q Consensus 162 --i-~~~~~d~~~~~-~~~---~~fD~v~~~~~l~----~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 230 (340)
+ .++++|+.+.. +++ ++||+|++..+++ ++++...+++++.++|||||++++.+.......... ....
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~-~~~~ 212 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG-EQKF 212 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-TEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC-Cccc
Confidence 7 89999997753 345 7899999999999 666778999999999999999999875433211100 0011
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
.....+.+++.++|+++||+++++......
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 242 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEVISQN 242 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 223568899999999999999999887643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-19 Score=165.13 Aligned_cols=139 Identities=27% Similarity=0.366 Sum_probs=112.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++ .||+|++..++||+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---NNLTYVGGDMFT-SIP--NADAVLLKYILHNW 259 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---TTEEEEECCTTT-CCC--CCSEEEEESCGGGS
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---CCcEEEeccccC-CCC--CccEEEeehhhccC
Confidence 4678999999999999999999999999999999 9999888753 569999999976 544 39999999999999
Q ss_pred CCHH--HHHHHHHHhccc---CcEEEEEccCCCchh------HhhHhhhHh-----hcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 192 PDPQ--RGIKEAYRVLKI---GGKACVIGPVYPTFW------LSRFFADVW-----MLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 192 ~d~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+|.. .+|++++++||| ||++++.+...+... ......+.. ...++.++|.++++++||+++++.
T Consensus 260 ~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 339 (352)
T 1fp2_A 260 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS 339 (352)
T ss_dssp CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEE
Confidence 9887 999999999999 999999876543211 111111111 234689999999999999999887
Q ss_pred Ee
Q 019479 256 RI 257 (340)
Q Consensus 256 ~~ 257 (340)
..
T Consensus 340 ~~ 341 (352)
T 1fp2_A 340 PL 341 (352)
T ss_dssp EE
T ss_pred ec
Confidence 75
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=151.78 Aligned_cols=144 Identities=21% Similarity=0.164 Sum_probs=111.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCc--c
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGS--I 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~--l 188 (340)
++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+ +
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 47899999999999999999884 499999999999999987632 26799999999988877889999999999 5
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-----hHhhhHhhc---------------------------CCC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-----RFFADVWML---------------------------FPK 236 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~~---------------------------~~~ 236 (340)
++..+...+++++.++|||||++++.++........ ......+.. ...
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 566677899999999999999999986643211100 000000000 111
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCC
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.++.++|+++||+.+++..++.
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~ 217 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGN 217 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETT
T ss_pred -hHHHHHHHHHhhhHHHHHHhCC
Confidence 4789999999999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=157.68 Aligned_cols=145 Identities=13% Similarity=0.106 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCC------------------------------
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK------------------------------ 160 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~------------------------------ 160 (340)
.++.+|||||||+|.++..++.. + .+|+|+|+|+.|++.|+++....
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 36789999999999887776655 4 47999999999999998753110
Q ss_pred --CcE-EEEcCCCCC-CC---CCCCccEEEecCccccc----CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh
Q 019479 161 --ECT-IIEGDAEDL-PF---PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229 (340)
Q Consensus 161 --~i~-~~~~d~~~~-~~---~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 229 (340)
++. ++++|+.+. ++ ..++||+|+++.++||+ ++...++++++++|||||++++.+.......... -..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g-~~~ 210 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG-KRE 210 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-TEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeC-CeE
Confidence 133 889999763 33 25689999999999986 3446899999999999999999865433211100 001
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 230 VWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 230 ~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.....++.+++.++|+++||+++++.....
T Consensus 211 ~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~ 240 (263)
T 2a14_A 211 FSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 240 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred eeccccCHHHHHHHHHHCCCEEEEEeeccc
Confidence 112245899999999999999999988753
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=157.21 Aligned_cols=146 Identities=17% Similarity=0.280 Sum_probs=115.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCCCCCC------CCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDLPFPT------DYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~~~~~------~~fD 180 (340)
++.+|||||||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. ...+++++++|++++++.+ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 68899999999999999999876 7899999999999999999872 2468999999999988777 7999
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC---CCc-hhHhhHhhhHh-------hcC--CCHHHHHHHHHHC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV---YPT-FWLSRFFADVW-------MLF--PKEEEYIEWFQKA 247 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~---~~~-~~~~~~~~~~~-------~~~--~~~~~~~~~l~~a 247 (340)
+|++..++||+ ++..+++++.++|||||++++.+.. ... ......+.... ..+ ...+.+.++++++
T Consensus 116 ~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~ 194 (299)
T 3g5t_A 116 MITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDS 194 (299)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTC
T ss_pred EEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhcc
Confidence 99999999999 9999999999999999999884322 111 11112222111 112 4566788999999
Q ss_pred CC-----cEEEEEEeCC
Q 019479 248 GF-----KDVKLKRIGP 259 (340)
Q Consensus 248 GF-----~~v~~~~~~~ 259 (340)
|| +.++...+..
T Consensus 195 gfp~~~f~~v~~~~~~~ 211 (299)
T 3g5t_A 195 HLDPELFHDIQVSYFCA 211 (299)
T ss_dssp CCCTTTEEEEEEEEECG
T ss_pred CCChHHcCcceEEEecc
Confidence 99 6666666543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=158.11 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=117.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++.+|+.+++++|++ .+++.++++.. ..+++++.+|+.+.+++.+ ||+|++.++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF 241 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence 36789999999999999999999988999999999 99999987632 2469999999987665544 999999999
Q ss_pred ccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch----hHhhHhhh---H---hhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 188 IEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF----WLSRFFAD---V---WMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 188 l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~---~---~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+|++++. ..+++++.++|||||++++.+...+.. ........ . ....++.++|.++++++||+++++.
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 9999665 589999999999999999987665421 11111110 0 2236789999999999999999987
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 322 ~~~ 324 (335)
T 2r3s_A 322 SLP 324 (335)
T ss_dssp CCT
T ss_pred ECC
Confidence 764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-19 Score=170.16 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=117.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC-CcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~i~~~~~d~~~~~~~~~ 177 (340)
.+...++..... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.... ...+...+.+.++++++
T Consensus 94 ~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 94 MLARDFLATELT-GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHHTTTC-SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC-CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCC
Confidence 344555555543 46889999999999999999987 679999999999999999762111 11122333344556678
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH---hhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV---WMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+||+|++.++++|++|+..++++++++|||||++++..+..........+... ...+++.+++.++++++||+++++
T Consensus 171 ~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred CEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999986653322211111111 123568999999999999999999
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
..+.
T Consensus 251 ~~~~ 254 (416)
T 4e2x_A 251 QRLP 254 (416)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 8874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=145.35 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=110.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ..++++++++|+.++++ +++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 5679999999999999999987 779999999999999998763 23479999999988877 78899999999999
Q ss_pred ccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|++ +...+++++.++|||||++++.+......+.. .......++.+++.+++++ |++++..+.
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---TVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---CSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC---CCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 997 77899999999999999988876443221110 0111224578899999986 999887765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-19 Score=157.52 Aligned_cols=147 Identities=16% Similarity=0.100 Sum_probs=116.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCC-CCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPF-PTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~-~~~~fD~v~~~~ 186 (340)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++... .+++++++|+.+.++ .+++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 46789999999999999998887 456999999999999999987432 368999999998877 578899999999
Q ss_pred cccc----cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh---------------------h-------------Hhh
Q 019479 187 SIEY----WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS---------------------R-------------FFA 228 (340)
Q Consensus 187 ~l~~----~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------~-------------~~~ 228 (340)
++|| ..+...+++++.++|||||++++..+........ . ...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9987 4566789999999999999999987653211100 0 000
Q ss_pred hHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 229 DVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.....+.+.+++.++++++||++++...+..
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~ 252 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFID 252 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCHHH
Confidence 0112356889999999999999999988754
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=161.91 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=116.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++. . ..+++++.+|+.+ +++. .||+|++..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 4678999999999999999999988899999999 99999998763 1 2479999999975 3343 4999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEccC-CCch---hHhhHhhh-----HhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGPV-YPTF---WLSRFFAD-----VWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~-~~~~---~~~~~~~~-----~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+|++++.. .+++++.++|||||++++.+.. .+.. ........ .....++.++|.++++++||+++++..
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 99998874 8999999999999999998876 3321 11111111 112357999999999999999999888
Q ss_pred eCC
Q 019479 257 IGP 259 (340)
Q Consensus 257 ~~~ 259 (340)
...
T Consensus 339 ~~~ 341 (360)
T 1tw3_A 339 LPS 341 (360)
T ss_dssp EEC
T ss_pred CCC
Confidence 753
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-19 Score=159.30 Aligned_cols=115 Identities=23% Similarity=0.234 Sum_probs=95.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----C---CCCcEEEEcCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----P---LKECTIIEGDAED 171 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~---~~~i~~~~~d~~~ 171 (340)
.+...+...+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. . ..++.+..+|+.+
T Consensus 44 ~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 44 EYKAWLLGLLRQ-HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHH-TTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHhcc-cCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 344444443332 36789999999999999999998 679999999999999998752 1 1467889999987
Q ss_pred CC---CCCCCccEEEec-CcccccCC-------HHHHHHHHHHhcccCcEEEEEcc
Q 019479 172 LP---FPTDYADRYVSA-GSIEYWPD-------PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 172 ~~---~~~~~fD~v~~~-~~l~~~~d-------~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++ +++++||+|++. .+++|+.+ ...++++++++|||||++++..+
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 76 678899999998 89999999 88999999999999999998754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-19 Score=157.69 Aligned_cols=144 Identities=21% Similarity=0.221 Sum_probs=107.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--------------------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------------------------------- 160 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------------------------------- 160 (340)
++.+|||||||+|..+..++.. ++.+|+|+|+|+.|++.|+++....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 6789999999999965444443 4679999999999999998753210
Q ss_pred -CcEEEEcCCCC-CCC-----CCCCccEEEecCcccc----cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh
Q 019479 161 -ECTIIEGDAED-LPF-----PTDYADRYVSAGSIEY----WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229 (340)
Q Consensus 161 -~i~~~~~d~~~-~~~-----~~~~fD~v~~~~~l~~----~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 229 (340)
.++++.+|+.+ +++ ++++||+|+++.++++ ++++..++++++++|||||+|++............ -..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~-~~~ 228 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG-EAR 228 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-TEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC-Cee
Confidence 13566779877 553 3466999999999999 66778999999999999999999753322111100 000
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 230 VWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 230 ~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+++.+++.++|+++||+++++....
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 11235689999999999999999988775
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.09 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=109.4
Q ss_pred CCCEEEEEcCcc---chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC-----------CCCC
Q 019479 113 RNMRVVDVGGGT---GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP-----------FPTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~-----------~~~~ 177 (340)
...+|||||||+ |.++..+.+..|+.+|+++|+|+.|++.|+++.. ..+++++++|+.+.. ++..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9988888787888999999999999999998843 367999999997521 2234
Q ss_pred CccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCc-hhHhhH---hhhH--hhcCCCHHHHHHHHHHCCC
Q 019479 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPT-FWLSRF---FADV--WMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~---~~~~--~~~~~~~~~~~~~l~~aGF 249 (340)
+||+|++..++||+++ ...++++++++|||||+|++.+..... ...... +... ...+++.+++.++| .||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~G~ 234 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--GDF 234 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--TTC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--CCC
Confidence 7999999999999987 789999999999999999998766532 111111 1111 12357999999999 599
Q ss_pred cEEE
Q 019479 250 KDVK 253 (340)
Q Consensus 250 ~~v~ 253 (340)
++++
T Consensus 235 ~l~~ 238 (274)
T 2qe6_A 235 ELVE 238 (274)
T ss_dssp EECT
T ss_pred eEcc
Confidence 8765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=153.67 Aligned_cols=138 Identities=30% Similarity=0.440 Sum_probs=107.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~- 191 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. . .++++|+.++++++++||+|++..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-K--NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-S--CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-C--CEEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 6789999999999999999987 6799999999999999998865 2 28899999988888899999998876665
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-----------hHhhhH-----------hhcCCCHHHHHHHHHHCCC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-----------RFFADV-----------WMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~-----------~~~~~~~~~~~~~l~~aGF 249 (340)
+++..+++++.++|||||++++..++....... ...... ...+++.+++.++ +||
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aGf 205 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EGF 205 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TTE
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cCc
Confidence 788999999999999999999986653211100 000000 0114577777766 888
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
+++++..+.
T Consensus 206 ~~~~~~~~~ 214 (260)
T 2avn_A 206 ETVDIRGIG 214 (260)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEECCC
Confidence 888777654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=139.29 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=110.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEec-Ccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSA-GSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~ 190 (340)
+++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. +++.++++|+.++++++++||+|++. .++++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF--PEARWVVGDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC--TTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC--CCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence 36789999999999999999987 679999999999999999876 46899999998888778899999998 78888
Q ss_pred cCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+.+ ...+++++.++|||||++++..+... ..+.+++.++++++||++++....
T Consensus 121 ~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 121 LAEDGREPALANIHRALGADGRAVIGFGAGR--------------GWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------------SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred cChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------------CcCHHHHHHHHHHcCCEEeeeecc
Confidence 843 36899999999999999998765432 247889999999999998877654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-19 Score=150.35 Aligned_cols=145 Identities=26% Similarity=0.262 Sum_probs=113.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 36789999999999985444444 47899999999999999987632 2578999999999888888999999999999
Q ss_pred cc--CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh--------H-----hhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 190 YW--PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR--------F-----FADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 190 ~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
|+ .+...+++++.++|||||++++.+.......... + ....+..+++.+++.++++++||...+.
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 99 5677999999999999999999876543321100 0 0011224668999999999999987766
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 181 ~~~ 183 (209)
T 2p8j_A 181 RVV 183 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=153.73 Aligned_cols=153 Identities=23% Similarity=0.291 Sum_probs=119.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~ 177 (340)
..++..... .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++. . ..+++++.+|+.+.++++
T Consensus 180 ~~l~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~- 256 (359)
T 1x19_A 180 QLLLEEAKL-DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE- 256 (359)
T ss_dssp HHHHHHCCC-TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-
T ss_pred HHHHHhcCC-CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-
Confidence 334444443 4678999999999999999999999999999999 99999999763 2 245999999998876554
Q ss_pred CccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCch---hHhhHhhh---Hh-h----cCCCHHHHHHHH
Q 019479 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTF---WLSRFFAD---VW-M----LFPKEEEYIEWF 244 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~---~~-~----~~~~~~~~~~~l 244 (340)
+|+|++..++|++++ ...++++++++|||||++++.+...+.. ........ .. . .+++.++|.+++
T Consensus 257 -~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll 335 (359)
T 1x19_A 257 -ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 335 (359)
T ss_dssp -CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHH
T ss_pred -CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHH
Confidence 499999999999988 5789999999999999999987554321 11111100 00 1 137999999999
Q ss_pred HHCCCcEEEEEEeC
Q 019479 245 QKAGFKDVKLKRIG 258 (340)
Q Consensus 245 ~~aGF~~v~~~~~~ 258 (340)
+++||+++++..+.
T Consensus 336 ~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 336 ESLGYKDVTMVRKY 349 (359)
T ss_dssp HHHTCEEEEEEEET
T ss_pred HHCCCceEEEEecC
Confidence 99999999988764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-17 Score=137.77 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=110.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
.+...++..+.. .++.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++. ..++++++++|+.+....
T Consensus 27 ~i~~~~l~~l~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 105 (204)
T 3e05_A 27 EVRAVTLSKLRL-QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD 105 (204)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT
T ss_pred HHHHHHHHHcCC-CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc
Confidence 344444555444 4788999999999999999999977799999999999999999763 336799999999664434
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.++||+|++..+++ +...+++++.++|||||++++...... +.+++.++++++|| .+++.
T Consensus 106 ~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~l~~~g~-~~~~~ 165 (204)
T 3e05_A 106 LPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------TLTKAVEFLEDHGY-MVEVA 165 (204)
T ss_dssp SCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------HHHHHHHHHHHTTC-EEEEE
T ss_pred CCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------cHHHHHHHHHHCCC-ceeEE
Confidence 46799999988776 788999999999999999999764321 35678889999999 55555
Q ss_pred Ee
Q 019479 256 RI 257 (340)
Q Consensus 256 ~~ 257 (340)
.+
T Consensus 166 ~~ 167 (204)
T 3e05_A 166 CV 167 (204)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=144.76 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=104.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+++ ++++||+|++..+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHh
Confidence 46789999999999999999988 57999999999999999988543 57999999999887 6788999999999999
Q ss_pred cCCHH---HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 191 WPDPQ---RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 191 ~~d~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++++. .+++++.++|||||++++..+.... ...|......+.+..++.+ ++..++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~e~ 185 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT-------CRRWGHVAGAETVITILTE-ALTEVER 185 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH-------HHHTTCSCCHHHHHHHHHH-HSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCc-------chhhhhhhhHHHHHHHHHh-hccceEE
Confidence 99874 6799999999999999998654321 1112223455666666654 3554443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=161.64 Aligned_cols=139 Identities=24% Similarity=0.280 Sum_probs=112.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---NENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---CSSEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---CCCcEEEeCccCC-CCC--CceEEEEcccccCCC
Confidence 568999999999999999999999999999999 788877764 2569999999977 554 499999999999999
Q ss_pred CHH--HHHHHHHHhccc---CcEEEEEccCCCchh------HhhHhhhH------hhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 193 DPQ--RGIKEAYRVLKI---GGKACVIGPVYPTFW------LSRFFADV------WMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 193 d~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
|.. .+|++++++||| ||++++.+...+... ......+. ....++.++|.++++++||+++++.
T Consensus 266 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 987 999999999999 999999876533211 11111111 1235689999999999999999988
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
...
T Consensus 346 ~~~ 348 (358)
T 1zg3_A 346 PIS 348 (358)
T ss_dssp EET
T ss_pred ecC
Confidence 753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=155.19 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=107.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---------CcEEEEcCC------CCC--CCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------ECTIIEGDA------EDL--PFP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------~i~~~~~d~------~~~--~~~ 175 (340)
++.+|||||||+|..+..++.. ++.+|+|+|+|+.|++.|+++.... +++|.+.|+ +++ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 5789999999999877766665 3579999999999999999874211 256888887 222 245
Q ss_pred CCCccEEEecCccccc---CCHHHHHHHHHHhcccCcEEEEEccCCCchhH----------------h------------
Q 019479 176 TDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL----------------S------------ 224 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------------~------------ 224 (340)
+++||+|+|..++|++ .+...++++++++|||||++++..+....... .
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 6789999999999875 45579999999999999999987653211000 0
Q ss_pred --hHh-----hhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 225 --RFF-----ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 225 --~~~-----~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.+. .+....+.+.+++.++++++||++++...+..
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT 248 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence 000 00111256789999999999999999988754
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=143.46 Aligned_cols=115 Identities=23% Similarity=0.228 Sum_probs=98.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+ ..+|+|+|+|+. +++++++|+.++++++++||+|++..++|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~- 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI-----RNPVHCFDLASL------------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG- 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS------------STTEEESCTTSCSCCTTCEEEEEEESCCCS-
T ss_pred CCCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC------------CceEEEeccccCCCCCCCEeEEEEehhccc-
Confidence 46789999999999998776 368999999886 578899999988888889999999999975
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+...+++++.++|+|||++++.+.... +.+.+++.++++++||++++.....
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------------~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSR--------------FEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGG--------------CSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------------CCCHHHHHHHHHHCCCEEEEEecCC
Confidence 8999999999999999999999875421 3378999999999999998865543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=143.31 Aligned_cols=133 Identities=20% Similarity=0.132 Sum_probs=107.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA-EDLPFP 175 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~~~~~ 175 (340)
...+...++.... .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+ +.++++
T Consensus 34 ~~~l~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~d~~~~~~~~ 107 (226)
T 3m33_A 34 PELTFDLWLSRLL--TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN--APHADVYEWNGKGELPAG 107 (226)
T ss_dssp TTHHHHHHHHHHC--CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH--CTTSEEEECCSCSSCCTT
T ss_pred HHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh--CCCceEEEcchhhccCCc
Confidence 3444444443222 46889999999999999999998 78999999999999999988 46899999999 567777
Q ss_pred -CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 176 -TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+++||+|+++ .++..+++++.++|||||+++... .+.+.+++.+.++++||+++++
T Consensus 108 ~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~-----------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 108 LGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG-----------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp CCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE-----------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC-----------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 8899999987 466788999999999999998211 1335678899999999999887
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
....
T Consensus 165 ~~~~ 168 (226)
T 3m33_A 165 DHVS 168 (226)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 7653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=148.59 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=107.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+.+. +++||+|++..+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 6789999999999999999998 67999999999999999977321 278999999988776 788999999999999
Q ss_pred cCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+++. ..+++++.++|||||++++........... .......++.+++.++++. |+++...+.
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 260 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC---PLPFSFTFAENELKEYYKD--WEFLEYNEN 260 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC---SSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC---CCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence 9654 489999999999999987765432211000 0111224567888888854 988877544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-19 Score=152.55 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=106.6
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCC-
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDL- 172 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~- 172 (340)
|...+...+..... .++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++... .+++++.+|+++.
T Consensus 45 we~~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 45 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence 44444444444333 378999999999999999998874 46899999999999999987443 4578888888653
Q ss_pred -CCCCCCccEEEe-----cCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc--CCCHHHHHHHH
Q 019479 173 -PFPTDYADRYVS-----AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML--FPKEEEYIEWF 244 (340)
Q Consensus 173 -~~~~~~fD~v~~-----~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 244 (340)
++++++||.|+. ...++|+.+...++++++|+|||||++.+.+.... .......+.. ....+.+...|
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L 197 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW----GELMKSKYSDITIMFEETQVPAL 197 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH----HHHTTTTCSCHHHHHHHHTHHHH
T ss_pred ccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCc----hhhhhhhhhhhhhhhHHHHHHHH
Confidence 467888999975 45667788889999999999999999987542110 0000000000 00134566778
Q ss_pred HHCCCcEEEE
Q 019479 245 QKAGFKDVKL 254 (340)
Q Consensus 245 ~~aGF~~v~~ 254 (340)
.++||+++.+
T Consensus 198 ~eaGF~~~~i 207 (236)
T 3orh_A 198 LEAGFRRENI 207 (236)
T ss_dssp HHHTCCGGGE
T ss_pred HHcCCeEEEE
Confidence 8999986444
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=146.32 Aligned_cols=149 Identities=22% Similarity=0.292 Sum_probs=117.2
Q ss_pred hcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEE
Q 019479 88 DHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTI 164 (340)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~ 164 (340)
...+.++..++.+...++.... .++.+|||+|||+|..+..+++.+|+.+|+++|+|+.+++.++++. ..+++++
T Consensus 86 ~~~~ipr~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~ 163 (276)
T 2b3t_A 86 PATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHI 163 (276)
T ss_dssp TTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred CCCcccCchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEE
Confidence 3445566677777777777654 3678999999999999999999888899999999999999999773 3347999
Q ss_pred EEcCCCCCCCCCCCccEEEecCcc-------------cccC------------CHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 165 IEGDAEDLPFPTDYADRYVSAGSI-------------EYWP------------DPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 165 ~~~d~~~~~~~~~~fD~v~~~~~l-------------~~~~------------d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+++|+.+. +++++||+|+++..+ +|.+ +...+++++.++|||||++++...
T Consensus 164 ~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~--- 239 (276)
T 2b3t_A 164 LQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG--- 239 (276)
T ss_dssp ECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---
T ss_pred EEcchhhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---
Confidence 99999763 346789999998433 3322 335789999999999999998743
Q ss_pred chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 220 TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
..+.+++.++++++||+.+++..
T Consensus 240 --------------~~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 240 --------------WQQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp --------------SSCHHHHHHHHHHTTCTTCCEEE
T ss_pred --------------chHHHHHHHHHHHCCCcEEEEEe
Confidence 23578899999999998766544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=144.92 Aligned_cols=101 Identities=25% Similarity=0.287 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecC-cc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAG-SI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l 188 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.+++++ ++||+|++.. .+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTI 116 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCch
Confidence 36789999999999999999987 7899999999999999997632 23689999999887754 6799999874 44
Q ss_pred cccC--CHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWP--DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~--d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++. +...+++++.++|||||++++..
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 4443 44689999999999999998754
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=142.67 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=105.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH----Hh---CCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK----QK---EPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~----~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
.++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.+. ++ ...++++++++|+.++++.+++ |.|++
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 3678999999999999999999988999999999999888532 21 2335899999999998887766 77763
Q ss_pred cC---cc--cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCC----CHHHHHHHHHHCCCcEEEEE
Q 019479 185 AG---SI--EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFP----KEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 185 ~~---~l--~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~aGF~~v~~~ 255 (340)
.. .. +|++++..+++++.++|||||++++............... ..... ..+.+.++++++||+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVG--EHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGT--TCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccc--cCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 32 22 2677888999999999999999998532211000000000 00011 23458889999999999998
Q ss_pred EeCC
Q 019479 256 RIGP 259 (340)
Q Consensus 256 ~~~~ 259 (340)
.+..
T Consensus 183 ~~~~ 186 (218)
T 3mq2_A 183 YLEP 186 (218)
T ss_dssp EECH
T ss_pred ccch
Confidence 8753
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=136.00 Aligned_cols=127 Identities=21% Similarity=0.116 Sum_probs=102.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++. ...++.++++|+.+++ +++++||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 578999999999999999999988899999999999999998763 2368999999998866 66788999999865
Q ss_pred ccccC--------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 188 IEYWP--------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 188 l~~~~--------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
..+.. ....+++++.++|||||.+++...... ..+.+.+.++++||+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG----------------LFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH----------------HHHHHHHHHHHCCCeeeecc
Confidence 43322 125799999999999999988753211 12456678889999987665
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=131.94 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=101.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||+|||+|.++..+++. + +|+|+|+|+.+++. ..+++++++|+.+ ++++++||+|+++..+++.+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~ 92 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDT 92 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTC
T ss_pred CCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------ccCCeEEECChhh-hcccCCCCEEEECCCCccCC
Confidence 5679999999999999999988 4 99999999999988 3679999999987 55668899999999988765
Q ss_pred CH---------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 193 DP---------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 193 d~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+. ..+++++.+.| |||++++..... .+.+++.++++++||+.+.+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------~~~~~l~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------NRPKEVLARLEERGYGTRILKVRK 150 (170)
T ss_dssp CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------GCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------CCHHHHHHHHHHCCCcEEEEEeec
Confidence 54 57889999999 999999876432 257889999999999988887754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-16 Score=134.71 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCC---CCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAED---LPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~---~~~~~~~fD~v~~~~ 186 (340)
++|.+|||+|||+|.++..+++.. |.++|+|+|+++.|++.++++.. ..|+..+.+|... .+...+++|+|++.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d- 154 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD- 154 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC-
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe-
Confidence 689999999999999999999986 56899999999999999998854 4689999998854 34567789999864
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.+..+...+++++.+.|||||++++............. ....++..+.|+++||+.++...+.+
T Consensus 155 -~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~-------~~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 155 -VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEP-------SEVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp -CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCC-------CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred -ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCCh-------HHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 344456778999999999999999887432211100000 00113445678999999999888754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-16 Score=135.22 Aligned_cols=138 Identities=22% Similarity=0.213 Sum_probs=105.6
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCC----CCCCCCCc
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAED----LPFPTDYA 179 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~----~~~~~~~f 179 (340)
+..... .++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.++++.. ..++.++.+|+.+ .++. ++|
T Consensus 67 l~~~~~-~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~ 144 (230)
T 1fbn_A 67 LKVMPI-KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKV 144 (230)
T ss_dssp CCCCCC-CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCE
T ss_pred ccccCC-CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccE
Confidence 444433 47889999999999999999999766899999999999999988743 3689999999987 6665 789
Q ss_pred cEEEecCcccccCCH---HHHHHHHHHhcccCcEEEEEccCC--C-chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 180 DRYVSAGSIEYWPDP---QRGIKEAYRVLKIGGKACVIGPVY--P-TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 180 D~v~~~~~l~~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
|+|+ +++.++ ..+++++.++|||||++++..... + ....... ..+++. +|+++||+.++
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---------~~~~l~-~l~~~Gf~~~~ 209 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEI---------FKEQKE-ILEAGGFKIVD 209 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHH---------HHHHHH-HHHHHTEEEEE
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHh---------hHHHHH-HHHHCCCEEEE
Confidence 9999 455566 678999999999999999861100 0 0000011 136677 89999999998
Q ss_pred EEEeCC
Q 019479 254 LKRIGP 259 (340)
Q Consensus 254 ~~~~~~ 259 (340)
...+.+
T Consensus 210 ~~~~~~ 215 (230)
T 1fbn_A 210 EVDIEP 215 (230)
T ss_dssp EEECTT
T ss_pred EEccCC
Confidence 887754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=139.99 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCC-HHHHHHH---HHh---CCCCCcEEEEcCCCCCCCC-CCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQS-PHQLAKA---KQK---EPLKECTIIEGDAEDLPFP-TDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s-~~~~~~a---~~~---~~~~~i~~~~~d~~~~~~~-~~~fD~v~~ 184 (340)
++.+|||||||+|.++..+++..++.+|+|+|+| +.|++.| +++ ...++++++++|+++++.. .+.+|.|++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 6789999999999999999987788999999999 7777776 544 2346799999999888531 134555554
Q ss_pred cCcccc-----cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCC-----HHHHHHHHHHCCCcEEEE
Q 019479 185 AGSIEY-----WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK-----EEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 185 ~~~l~~-----~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~aGF~~v~~ 254 (340)
+....+ ..+...++++++++|||||++++................ .....+ .+++.++++++||+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKR-GLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhc-CCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 432211 123457899999999999999984332222110000000 000112 235899999999999999
Q ss_pred EEeCCcc
Q 019479 255 KRIGPKW 261 (340)
Q Consensus 255 ~~~~~~~ 261 (340)
..+...+
T Consensus 183 ~~~~~~~ 189 (225)
T 3p2e_A 183 KELDNEY 189 (225)
T ss_dssp EEECHHH
T ss_pred eecCHHH
Confidence 8887543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=144.16 Aligned_cols=148 Identities=17% Similarity=0.187 Sum_probs=103.0
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCC-
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDL- 172 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~- 172 (340)
|...+...+.... ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++.. ..+++++++|+.++
T Consensus 45 ~~~~~~~~l~~~~--~~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 45 WETPYMHALAAAA--SSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp GGHHHHHHHHHHH--TTTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHhhc--CCCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence 4444444433332 236789999999999999999765 34599999999999999998753 25689999999887
Q ss_pred -CCCCCCccEEEe-cCcccccC-----CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc--CCCHHHHHHH
Q 019479 173 -PFPTDYADRYVS-AGSIEYWP-----DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML--FPKEEEYIEW 243 (340)
Q Consensus 173 -~~~~~~fD~v~~-~~~l~~~~-----d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 243 (340)
++++++||+|++ .+.+ +.. +...++++++++|||||++++.+..... ......+.. ....+.....
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 196 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG----ELMKSKYSDITIMFEETQVPA 196 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH----HHTTTTCSCHHHHHHHHTHHH
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHH----HhhchhhhhhhhhccHHHHHH
Confidence 788899999999 5543 222 2347799999999999999987643110 000000000 0012455678
Q ss_pred HHHCCCcE
Q 019479 244 FQKAGFKD 251 (340)
Q Consensus 244 l~~aGF~~ 251 (340)
+.++||+.
T Consensus 197 l~~aGF~~ 204 (236)
T 1zx0_A 197 LLEAGFRR 204 (236)
T ss_dssp HHHTTCCG
T ss_pred HHHCCCCC
Confidence 99999984
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=138.89 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=104.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC---CCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP---TDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~---~~~fD~v~~~ 185 (340)
.++.+|||||||+|..+..++...++.+|+|+|+|+.+++.++++. ...+++++++|++++++. +++||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 3678999999999999999998777899999999999999998762 335799999999876643 5789999987
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. +.+...+++++.++|||||++++........ ..+++.+.++++||++++...+.
T Consensus 149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 149 A----VARLSVLSELCLPLVKKNGLFVALKAASAEE--------------ELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH--------------HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCCEEEEEeCCCchH--------------HHHHHHHHHHHcCCeEeEEEEEe
Confidence 6 4678899999999999999998874221110 13467788999999998887653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=131.27 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=105.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCC-CcEEEEcCCCC-CCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK-ECTIIEGDAED-LPF 174 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~-~i~~~~~d~~~-~~~ 174 (340)
++..++..+.. .++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.++++. ..+ ++ ++.+|..+ ++.
T Consensus 13 ~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~ 90 (178)
T 3hm2_A 13 VRALAISALAP-KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD 90 (178)
T ss_dssp HHHHHHHHHCC-CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred HHHHHHHHhcc-cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence 44444444443 4678999999999999999999988899999999999999999763 223 67 88888844 333
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
.+++||+|++..++++ ..+++++.++|||||++++...... +...+.+++++.|++..++
T Consensus 91 ~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE----------------SEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp CCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH----------------HHHHHHHHHHHHCCEEEEE
T ss_pred cCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc----------------cHHHHHHHHHHcCCeeEEE
Confidence 3378999999999987 5789999999999999998865432 3456778889999887665
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 151 ~~~ 153 (178)
T 3hm2_A 151 AIS 153 (178)
T ss_dssp EEE
T ss_pred Eee
Confidence 443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=131.71 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=105.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCC-CcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK-ECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~-~i~~~~~d~~~~~~~ 175 (340)
+...++..+.. .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++. ..+ +++++++|+.+....
T Consensus 43 ~~~~~l~~l~~-~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 43 MRALTLAALAP-RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHHHHCC-CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHHHHhcCC-CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence 33444444443 46889999999999999999998 789999999999999999773 334 899999999873223
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.++||+|++...+ +.. +++++.++|||||++++...... +..++.+++++.||++.++.
T Consensus 120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE----------------SETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH----------------HHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc----------------cHHHHHHHHHhCCCcEEEEE
Confidence 4579999987744 566 99999999999999998865421 35677789999999887765
Q ss_pred Ee
Q 019479 256 RI 257 (340)
Q Consensus 256 ~~ 257 (340)
..
T Consensus 179 ~~ 180 (204)
T 3njr_A 179 IA 180 (204)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-18 Score=143.49 Aligned_cols=150 Identities=20% Similarity=0.118 Sum_probs=98.9
Q ss_pred cCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcC
Q 019479 91 INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGD 168 (340)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d 168 (340)
+.++..++.+...++.......++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.++++.... +++++++|
T Consensus 8 ~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d 87 (215)
T 4dzr_A 8 LIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAAD 87 (215)
T ss_dssp GSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHH
T ss_pred cCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcc
Confidence 3455555566666666554435788999999999999999999988889999999999999999875432 67888888
Q ss_pred CCCCCCCC-----CCccEEEecCcccccCCH--------------------------HHHHHHHHHhcccCcEEEEEccC
Q 019479 169 AEDLPFPT-----DYADRYVSAGSIEYWPDP--------------------------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 169 ~~~~~~~~-----~~fD~v~~~~~l~~~~d~--------------------------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.+ ++++ ++||+|+++..+++..+. ..+++++.++|||||++++....
T Consensus 88 ~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 88 GIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 866 4444 889999997555443221 57888999999999994444332
Q ss_pred CCchhHhhHhhhHhhcCCCHHHHHHHHH--HCCCcEEEEEEe
Q 019479 218 YPTFWLSRFFADVWMLFPKEEEYIEWFQ--KAGFKDVKLKRI 257 (340)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGF~~v~~~~~ 257 (340)
. ...+++.++++ ++||..+++...
T Consensus 167 ~----------------~~~~~~~~~l~~~~~gf~~~~~~~~ 192 (215)
T 4dzr_A 167 H----------------NQADEVARLFAPWRERGFRVRKVKD 192 (215)
T ss_dssp T----------------SCHHHHHHHTGGGGGGTEECCEEEC
T ss_pred C----------------ccHHHHHHHHHHhhcCCceEEEEEe
Confidence 1 24677888999 999988776554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=134.96 Aligned_cols=127 Identities=19% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.|+++. ...|++++++|+.+++ +++++||.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 577999999999999999999988999999999999999998763 3468999999998765 66788999988654
Q ss_pred ccccCC--------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 188 IEYWPD--------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 188 l~~~~d--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
..+... ...+++++.++|||||.+++...... ..+.+.+.++++||..+...
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~----------------~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG----------------LFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH----------------HHHHHHHHHHHHTCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCcccccc
Confidence 433221 25789999999999999998753211 12345667888899876543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=136.95 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=105.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC---CCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP---TDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~---~~~fD~v~~~ 185 (340)
.++.+|||||||+|..+..++..+|+.+|+++|+|+.+++.++++. ...|++++++|+++++.. .++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999988999999999999999999763 345799999999876532 4789999986
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
. +.+...+++.+.++|||||++++........ ...++.+.++..||+++++..+..
T Consensus 159 a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~--------------e~~~~~~~l~~~G~~~~~~~~~~~ 214 (249)
T 3g89_A 159 A----VAPLCVLSELLLPFLEVGGAAVAMKGPRVEE--------------ELAPLPPALERLGGRLGEVLALQL 214 (249)
T ss_dssp S----SCCHHHHHHHHGGGEEEEEEEEEEECSCCHH--------------HHTTHHHHHHHHTEEEEEEEEEEC
T ss_pred C----cCCHHHHHHHHHHHcCCCeEEEEEeCCCcHH--------------HHHHHHHHHHHcCCeEEEEEEeeC
Confidence 4 3577899999999999999998765322111 123566778889999999888743
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=131.51 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCC-CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDL-PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~-~~~~~~fD~v~~~~~ 187 (340)
+++.+|||+||| +|.++..+++.. +.+|+|+|+|+.+++.|+++... .+++++++|+..+ ++++++||+|+++..
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 478999999999 999999999986 78999999999999999977321 2799999997433 455688999999877
Q ss_pred ccccCC-------------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC
Q 019479 188 IEYWPD-------------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 188 l~~~~d-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 248 (340)
+++..+ ...+++++.++|||||++++..+... ...+++.++++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~l~~~g 197 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------KLLNVIKERGIKLG 197 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------HHHHHHHHHHHHTT
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------hHHHHHHHHHHHcC
Confidence 665433 36789999999999999998754321 13567888999999
Q ss_pred CcEEEEEE
Q 019479 249 FKDVKLKR 256 (340)
Q Consensus 249 F~~v~~~~ 256 (340)
|++..+..
T Consensus 198 ~~~~~~~~ 205 (230)
T 3evz_A 198 YSVKDIKF 205 (230)
T ss_dssp CEEEEEEE
T ss_pred CceEEEEe
Confidence 97766544
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-16 Score=131.03 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++... ++++++++|+.++++++++||+|++..++++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 4678999999999999999998832 3899999999999999988543 6799999999988888889999999988876
Q ss_pred cC---------------CHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 191 WP---------------DPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 191 ~~---------------d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+. +...+++++.++|||||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 64 45789999999999999999998654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=132.23 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=104.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++. ...+++++++|+.+. .+++||+|+++..+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD--VDGKFDLIVANILA 135 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT--CCSCEEEEEEESCH
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc--CCCCceEEEECCcH
Confidence 36789999999999999998875 5679999999999999999873 334599999999764 35789999999887
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+++ ..+++++.++|||||++++.+.... +.+++.++++++||+++++...+
T Consensus 136 ~~~---~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~Gf~~~~~~~~~ 186 (205)
T 3grz_A 136 EIL---LDLIPQLDSHLNEDGQVIFSGIDYL----------------QLPKIEQALAENSFQIDLKMRAG 186 (205)
T ss_dssp HHH---HHHGGGSGGGEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTEEEEEEEEET
T ss_pred HHH---HHHHHHHHHhcCCCCEEEEEecCcc----------------cHHHHHHHHHHcCCceEEeeccC
Confidence 753 6889999999999999998754322 46788899999999999887754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=131.47 Aligned_cols=120 Identities=13% Similarity=0.026 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~l 188 (340)
.++.+|||||||. +++|+|+.|++.|+++.. .+++++++|++++++ ++++||+|++..++
T Consensus 11 ~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-NEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-TTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-cCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 5789999999996 239999999999998865 359999999988876 78899999999999
Q ss_pred ccc-CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 189 EYW-PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 189 ~~~-~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
||+ ++...++++++++|||||++++.++...... . ....++.+++.++|+++|| +. +...
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----~--~~~~~~~~~~~~~l~~aGf-i~-~~~~ 134 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-----N--NSKVKTASKLCSALTLSGL-VE-VKEL 134 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----S--SSSSCCHHHHHHHHHHTTC-EE-EEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-----c--ccccCCHHHHHHHHHHCCC-cE-eecC
Confidence 999 9999999999999999999999654322100 0 1123478999999999999 43 5554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=138.75 Aligned_cols=124 Identities=18% Similarity=0.284 Sum_probs=105.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++. ..++++++++|+.+ ++++++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA-- 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE--
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE--
Confidence 47889999999999999999997 57789999999999999999873 33579999999987 556778999998
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+++++..+++++.++|||||++++..+... ..+++.+.++++||..++....
T Consensus 186 ---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------~~~~~~~~l~~~Gf~~~~~~~~ 237 (275)
T 1yb2_A 186 ---DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------QSEKTVLSLSASGMHHLETVEL 237 (275)
T ss_dssp ---CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------HHHHHHHHSGGGTEEEEEEEEE
T ss_pred ---cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCeEEEEEEE
Confidence 567888999999999999999999875421 2356777888999999888775
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.9e-16 Score=129.96 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEecC-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSAG- 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~- 186 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ..++++++++|...++ +.+++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 47889999999999999999988 789999999999999999873 2367999998877643 3467899999873
Q ss_pred cccc--------cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 187 SIEY--------WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 187 ~l~~--------~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+++ ..+...+++++.++|||||++++............. ....++.+.+...+|.+.....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEK--------DAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHH--------HHHHHHHHHSCTTTEEEEEEEESS
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHH--------HHHHHHHHhCCCceEEEEEehhhc
Confidence 2222 123347889999999999999987653221100000 012344445556678877766653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=141.30 Aligned_cols=145 Identities=20% Similarity=0.132 Sum_probs=111.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----------CCCCcEEEEcCCCCCC----CC--C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----------PLKECTIIEGDAEDLP----FP--T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----------~~~~i~~~~~d~~~~~----~~--~ 176 (340)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++. ...+++++++|+++++ ++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 6789999999999999999885 5789999999999999998763 2247899999998865 43 4
Q ss_pred CCccEEEecCccccc-CC---HHHHHHHHHHhcccCcEEEEEccCCCchhHh-------hH--------hh---------
Q 019479 177 DYADRYVSAGSIEYW-PD---PQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-------RF--------FA--------- 228 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~-~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~--------~~--------- 228 (340)
++||+|++..++|++ .+ ...+++++.++|||||++++..+........ .+ +.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 589999999999988 44 4589999999999999999886543210000 00 00
Q ss_pred -----------hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 229 -----------DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 229 -----------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+......+.+++.+++++.||++++...+.
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~ 233 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL 233 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence 000113567899999999999999987764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-16 Score=136.30 Aligned_cols=100 Identities=18% Similarity=0.153 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
+++.+|||||||+|.++..++.+.++++|+|+|+|+++++.|+++. ...+++++++|+.+++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 5899999999999987655545556899999999999999999873 2378999999998764 688999998654
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++..++++++.++|||||+|++.+.
T Consensus 198 --~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 --AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 57889999999999999999998763
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=133.67 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=110.1
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~ 176 (340)
..++..... .++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.++++. ...++++..+|+.+.++++
T Consensus 86 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDL-APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCC-CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 344444443 47889999999999999999998 45789999999999999999873 3468999999998877777
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
++||+|++ +.+++..+++++.++|||||++++..+... ...++.+.++++||..+++.+
T Consensus 165 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT----------------QVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp TCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH----------------HHHHHHHHHTTTTEEEEEEEE
T ss_pred CCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceEEEEE
Confidence 88999998 466778899999999999999999875421 134666788899999988877
Q ss_pred eC
Q 019479 257 IG 258 (340)
Q Consensus 257 ~~ 258 (340)
..
T Consensus 224 ~~ 225 (258)
T 2pwy_A 224 VG 225 (258)
T ss_dssp EE
T ss_pred ee
Confidence 53
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=149.99 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=111.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---------CCCCcEEEEcCCCCCCCCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---------PLKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---------~~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. ...+++++++|+.++++.+++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 68899999999999999999985 3479999999999999998731 3357999999999999888999999
Q ss_pred EecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHh-----------------hhHhh-cCCCHHHHHH
Q 019479 183 VSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-----------------ADVWM-LFPKEEEYIE 242 (340)
Q Consensus 183 ~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~~ 242 (340)
++..+++|++++. .+++++.++|||| .+++..++.........+ ....+ ...+.+++..
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~ 879 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFNQ 879 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHHHH
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHHHH
Confidence 9999999998876 5899999999999 877776654321111100 00000 1246677776
Q ss_pred ----HHHHCCCcEEEEEEeCCc
Q 019479 243 ----WFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 243 ----~l~~aGF~~v~~~~~~~~ 260 (340)
+.++.||.+ ++..++..
T Consensus 880 Wae~LAer~GYsV-efvGVGDg 900 (950)
T 3htx_A 880 WASKLGKRHNYSV-EFSGVGGS 900 (950)
T ss_dssp HHHHHHHHTTEEE-EEEEESSC
T ss_pred HHHHHHHhcCcEE-EEEccCCC
Confidence 667789975 56666543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=128.84 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=98.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|.++..+++.+|+.+++++|+|+.+++.++++ ....+++++++|+.+.+ +.++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec---
Confidence 47899999999999999999988889999999999999999876 33356999999998765 457899999754
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+.+...+++++.++|+|||++++.... ...+++.++++ ||+.++...+
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~~~-----------------~~~~~~~~~~~--g~~~~~~~~~ 188 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALKGQ-----------------MPEDEIALLPE--EYQVESVVKL 188 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEESS-----------------CCHHHHHTSCT--TEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEeCC-----------------CchHHHHHHhc--CCceeeeeee
Confidence 357789999999999999999887432 13455555554 9998876654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=127.64 Aligned_cols=133 Identities=17% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCC----CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDL----PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~----~~~~~~fD~v~~~~ 186 (340)
+++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+.. ...|+.++.+|+... ++. ++||+|++..
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 4788999999999999999999876679999999998765443321 125788899998763 333 7899999873
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH----HHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI----EWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGF~~v~~~~~~~ 259 (340)
.++ .+...+++++.++|||||++++...... .....+.+++. +.++++ |++++.....+
T Consensus 135 -~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p 197 (210)
T 1nt2_A 135 -AQK-NQIEILKANAEFFLKEKGEVVIMVKARS-----------IDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMP 197 (210)
T ss_dssp -CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH-----------HCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTT
T ss_pred -cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC-----------ccccCCHHHHHHHHHHHHHhh-cEEeeeecCCC
Confidence 221 2233558999999999999998832110 00011333332 338888 99999888754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=127.50 Aligned_cols=136 Identities=18% Similarity=0.259 Sum_probs=104.1
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCC--cEEEEcCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKE--CTIIEGDAEDLPFPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~--i~~~~~d~~~~~~~~ 176 (340)
..++..+.. .++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. ...+ ++++.+|+.+ +..+
T Consensus 42 ~~l~~~~~~-~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 117 (194)
T 1dus_A 42 KILVENVVV-DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHHCCC-CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHHccc-CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-cccc
Confidence 333444433 37789999999999999999888 789999999999999999773 3344 9999999977 3456
Q ss_pred CCccEEEecCcccc-cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 177 DYADRYVSAGSIEY-WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 177 ~~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
++||+|+++..+++ ..+...+++++.++|||||++++..+.... .+++.+.+++. |..+++.
T Consensus 118 ~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~----------------~~~~~~~l~~~-~~~~~~~ 180 (194)
T 1dus_A 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG----------------AKSLAKYMKDV-FGNVETV 180 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH----------------HHHHHHHHHHH-HSCCEEE
T ss_pred CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC----------------hHHHHHHHHHH-hcceEEE
Confidence 78999999988886 355678999999999999999998765421 23456667666 5555554
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
...
T Consensus 181 ~~~ 183 (194)
T 1dus_A 181 TIK 183 (194)
T ss_dssp EEE
T ss_pred ecC
Confidence 443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-16 Score=136.00 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=103.0
Q ss_pred CCCEEEEEcCcc--chHHHHHHH-hCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCCC------CCCCCcc
Q 019479 113 RNMRVVDVGGGT--GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDLP------FPTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~--G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~~------~~~~~fD 180 (340)
...+|||||||+ +.++..+++ ..|+.+|+++|.|+.|++.|++++.. .+++|+++|+.+++ ...+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 447899999997 444555444 56889999999999999999988543 36899999997742 1124455
Q ss_pred -----EEEecCcccccCC---HHHHHHHHHHhcccCcEEEEEccCCCch-hHhhHhhhHh------hcCCCHHHHHHHHH
Q 019479 181 -----RYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFADVW------MLFPKEEEYIEWFQ 245 (340)
Q Consensus 181 -----~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~l~ 245 (340)
.|+++.+|||++| +..+++++.+.|+|||+|++.+...+.. .....+...+ ..+++.+++..+|.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~ 237 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE 237 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC
Confidence 6889999999988 4689999999999999999987654321 1111111111 23679999999995
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
||+.++-
T Consensus 238 --GlelveP 244 (277)
T 3giw_A 238 --GLELVEP 244 (277)
T ss_dssp --TSEECTT
T ss_pred --CCcccCC
Confidence 9996553
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=123.70 Aligned_cols=132 Identities=24% Similarity=0.303 Sum_probs=105.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
..+...++..... .++.+|||+|||+|.++..+++ ++.+++|+|+++.+++.++++. ..++++++++|+.+ ++
T Consensus 21 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNL-NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VL 96 (183)
T ss_dssp HHHHHHHHHHHCC-CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HG
T ss_pred HHHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cc
Confidence 4444555555443 4678999999999999999988 5889999999999999999873 33579999999976 55
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++++||+|++..+ .+...+++++.++ |||.+++...... +..++.+.++++||.+..+
T Consensus 97 ~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 97 DKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE----------------NAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH----------------HHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc----------------cHHHHHHHHHHcCCeEEEE
Confidence 6678999999888 6778999999999 9999999875421 2466788999999876555
Q ss_pred E
Q 019479 255 K 255 (340)
Q Consensus 255 ~ 255 (340)
.
T Consensus 155 ~ 155 (183)
T 2yxd_A 155 N 155 (183)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=135.41 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=102.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.|+++. .++.+..+|+.++++++++||+|++..+..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPC-- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCC--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--CCcEEEEcchhhCCCCCCceeEEEEeCChh--
Confidence 3678999999999999999999887889999999999999999875 578999999998888888999999876533
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.++++.++|||||++++..+.....+... ...+....... ...+..+||++++...+.
T Consensus 160 -----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~gf~~~~~~~~~ 217 (269)
T 1p91_A 160 -----KAEELARVVKPGGWVITATPGPRHLMELK--GLIYNEVHLHA--PHAEQLEGFTLQQSAELC 217 (269)
T ss_dssp -----CHHHHHHHEEEEEEEEEEEECTTTTHHHH--TTTCSSCCCCC--CCCCCCTTEEEEEEEEEE
T ss_pred -----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH--HHhhccccccc--chhhHhcCCcEEEEEEEE
Confidence 58999999999999999887654322111 11111110000 024557899998887764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-16 Score=138.50 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=104.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCCCC--CCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDLPF--PTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~~~--~~~~fD~v 182 (340)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.++++. ..++++++.+|+.+... .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3578999999999999999998766789999999999999999875 24689999999976442 46789999
Q ss_pred EecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 183 VSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 183 ~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++....++.++. ..+++++.++|||||++++...... .. ....+++.+.++++||..++.....
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~---~~---------~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW---LD---------LELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT---TC---------HHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc---cc---------hHHHHHHHHHHHhCCCCcEEEEEee
Confidence 997666554333 5889999999999999998754321 00 0135678889999999988887664
Q ss_pred C
Q 019479 259 P 259 (340)
Q Consensus 259 ~ 259 (340)
.
T Consensus 242 v 242 (304)
T 3bwc_A 242 V 242 (304)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=131.68 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=103.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCC--CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLP--FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~--~~~~~fD~v~~~~ 186 (340)
++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|+++. . ..+++++++|+.+.+ ++.++||+|+++-
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 678999999999999999999854 49999999999999999873 2 246999999998764 4578899999975
Q ss_pred ccccc--------------------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 187 SIEYW--------------------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 187 ~l~~~--------------------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
.+... .+...+++.+.++|||||+++++.+. ....++.+.+++
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~~~~~l~~ 190 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-----------------ERLLDIIDIMRK 190 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------TTHHHHHHHHHH
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------HHHHHHHHHHHH
Confidence 55432 12347899999999999999986432 245678889999
Q ss_pred CCCcEEEEEEeCC
Q 019479 247 AGFKDVKLKRIGP 259 (340)
Q Consensus 247 aGF~~v~~~~~~~ 259 (340)
.||....+..+.+
T Consensus 191 ~~~~~~~~~~v~~ 203 (259)
T 3lpm_A 191 YRLEPKRIQFVHP 203 (259)
T ss_dssp TTEEEEEEEEEES
T ss_pred CCCceEEEEEeec
Confidence 9999988887754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=130.19 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=84.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--CCCCCCCc
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--LPFPTDYA 179 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~~~~~~~f 179 (340)
..++..+.. .++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|+++.....+.....++.. ....+++|
T Consensus 35 ~~il~~l~l-~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLENI-VPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTTC-CTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcCC-CCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 334444443 47889999999999999999997 78999999999999999998654433333333221 11125689
Q ss_pred cEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|+++.+++|+.. ...+++++.++| |||++++...
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 99999999999854 357999999999 9999998753
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=132.77 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=84.7
Q ss_pred CCCEEEEEcCccch----HHHHHHHhCC----CceEEEEeCCHHHHHHHHHhC---------------------C---C-
Q 019479 113 RNMRVVDVGGGTGF----TTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE---------------------P---L- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~----~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~---------------------~---~- 159 (340)
++.+|||+|||+|. .++.+++..+ +.+|+|+|+|+.+++.|++.. . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5666666644 469999999999999999752 0 0
Q ss_pred ---------CCcEEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 160 ---------KECTIIEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
.++.|.++|+.+.+++ .++||+|+|.++++|+++. .+++++++++|||||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2589999999875554 5689999999999999766 68999999999999999874
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=132.02 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~ 176 (340)
..++..... .++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++. .. ++++++++|+.+. +++
T Consensus 83 ~~i~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 160 (255)
T 3mb5_A 83 ALIVAYAGI-SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEE 160 (255)
T ss_dssp HHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCC
T ss_pred HHHHHhhCC-CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCC
Confidence 344444443 47889999999999999999998 56899999999999999999873 22 3499999999864 567
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC--CcEEEE
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG--FKDVKL 254 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG--F~~v~~ 254 (340)
++||+|++ +.+++..+++++.++|||||++++..+... ..+++.+.++++| |..+++
T Consensus 161 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN----------------QVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp CSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHTGGGBSCCEE
T ss_pred CCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH----------------HHHHHHHHHHHcCCCccccEE
Confidence 78999998 466778899999999999999998865421 2456778999999 999888
Q ss_pred EEeCCc
Q 019479 255 KRIGPK 260 (340)
Q Consensus 255 ~~~~~~ 260 (340)
.+...+
T Consensus 220 ~e~~~r 225 (255)
T 3mb5_A 220 INVLVF 225 (255)
T ss_dssp ECCCCC
T ss_pred EEEeee
Confidence 776543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=124.94 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=103.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~ 172 (340)
...+...++..... .++.+|||+|||+|.++..+++.. .+|+++|+++.+++.++++. .. .++++.++|+.+
T Consensus 18 ~~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 93 (192)
T 1l3i_A 18 AMEVRCLIMCLAEP-GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE- 93 (192)
T ss_dssp CHHHHHHHHHHHCC-CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-
T ss_pred hHHHHHHHHHhcCC-CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-
Confidence 34444555554443 478899999999999999999884 89999999999999999762 22 578999999865
Q ss_pred CCCC-CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 173 PFPT-DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 173 ~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+++. ++||+|++..+++ +...+++++.++|+|||++++...... +..++.+.+++.||.+
T Consensus 94 ~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~----------------~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDLGFDV 154 (192)
T ss_dssp HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHTTCCC
T ss_pred hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc----------------hHHHHHHHHHHCCCce
Confidence 2232 5799999988765 457899999999999999998865321 2467788999999953
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=127.98 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=88.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++. ..++++++++|+.+++ +++++||+|+++..
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 6789999999999999988776 4568999999999999999873 2357999999997653 34678999999988
Q ss_pred cccc-CCHHHHHHHHHH--hcccCcEEEEEccCC
Q 019479 188 IEYW-PDPQRGIKEAYR--VLKIGGKACVIGPVY 218 (340)
Q Consensus 188 l~~~-~d~~~~l~~~~~--~LkpgG~l~i~~~~~ 218 (340)
+++. .+...+++++.+ +|||||++++.....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7775 667789999999 999999999986543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-16 Score=141.41 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=96.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC------------CCCCcEEEE
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------PLKECTIIE 166 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~------------~~~~i~~~~ 166 (340)
.....++..+.. .++.+|||||||+|..+..++...+..+|+|+|+++.+++.|++.. ...+++|++
T Consensus 160 ~~i~~il~~l~l-~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~ 238 (438)
T 3uwp_A 160 DLVAQMIDEIKM-TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHHCC-CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred HHHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 445555555554 4789999999999999999998876567999999999999987631 136799999
Q ss_pred cCCCCCCCCC--CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 167 GDAEDLPFPT--DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 167 ~d~~~~~~~~--~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+|+.++++.+ ..||+|+++..+ +.++....|++++++|||||+|++.+...+
T Consensus 239 GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 239 GDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 9998877643 469999998776 456778899999999999999999876554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-16 Score=136.56 Aligned_cols=158 Identities=10% Similarity=0.040 Sum_probs=103.9
Q ss_pred HHHHHhccccCCC-CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-
Q 019479 99 DMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL- 172 (340)
Q Consensus 99 ~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~- 172 (340)
.+...++...... .++.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|+++. .. .+++++++|+.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 3444444433221 2577999999999999999998877789999999999999999873 22 3599999997652
Q ss_pred --CCC---CCCccEEEecCcccccC---------------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH-h
Q 019479 173 --PFP---TDYADRYVSAGSIEYWP---------------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV-W 231 (340)
Q Consensus 173 --~~~---~~~fD~v~~~~~l~~~~---------------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~ 231 (340)
+++ +++||+|+++..+++.. ....++.+++++|||||.+.+....... ........ +
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~--~~~~l~~~g~ 207 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHD--SLQLKKRLRW 207 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHH--HHHHGGGBSC
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHH--HHhcccceEE
Confidence 344 25899999986665433 1124567889999999998766431110 00111100 0
Q ss_pred -----hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 232 -----MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 232 -----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+.+++.++++++||+.+++..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 208 YSCMLGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp EEEEESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred EEECCCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 012345889999999999998887763
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=130.38 Aligned_cols=139 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-~~~~~fD~v~~~ 185 (340)
+++.+|||+|||+|.++..+++.+ +..+|+|+|+++.+++.|+++.. .++++++++|+.+++ ..+++||+|+++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 467899999999999999999986 45799999999999999998732 257999999997765 556789999987
Q ss_pred Ccccc---------cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 186 GSIEY---------WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 186 ~~l~~---------~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
..+.. ..+...+++++.++|||||++++............. ....++.+.+...+|++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~v~~~~~ 172 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEK--------EKVLEFLKGVDQKKFIVQRTDF 172 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHH--------HHHHHHHTTSCTTTEEEEEEEE
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHH--------HHHHHHHHhCCCCcEEEEEEEe
Confidence 65511 113357999999999999999988643321110000 0122333344556788877766
Q ss_pred eC
Q 019479 257 IG 258 (340)
Q Consensus 257 ~~ 258 (340)
+.
T Consensus 173 ~~ 174 (197)
T 3eey_A 173 IN 174 (197)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=130.79 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC-C--CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL-P--FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~-~--~~~~~fD~v~~~~ 186 (340)
.+.+|||||||+|.++..+++..|+..|+|+|+|+.+++.|+++ ....|++++++|+.++ + +++++||.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999999899999999999999999876 3446899999998763 3 6788999999875
Q ss_pred cccccCCH--------HHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDP--------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+.... ..+++++.++|||||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 44433222 2599999999999999988764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=130.31 Aligned_cols=138 Identities=15% Similarity=0.077 Sum_probs=97.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCC---CCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAED---LPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~---~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.+++.+.++.. ..+++++++|+.+ +++.+++||+|++..
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 468899999999999999999986 56899999999876655544321 1689999999977 344567899999854
Q ss_pred cccccCCH-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
. .++. ..++.++.++|||||++++........ ........ + .++ .++|+++||++++...+.+
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~----~-~~~-~~~l~~~Gf~~~~~~~~~~ 219 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIKANCID-STASAEAV----F-ASE-VKKMQQENMKPQEQLTLEP 219 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-SSSCHHHH----H-HHH-HHTTGGGTEEEEEEEECTT
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-cCCCHHHH----H-HHH-HHHHHHCCCceEEEEecCC
Confidence 4 2233 456889999999999999853210000 00000000 0 122 5889999999998777653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=134.90 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=99.6
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEE-EEcCCCCCC---CCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI-IEGDAEDLP---FPTDY 178 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~-~~~d~~~~~---~~~~~ 178 (340)
.++.......++.+|||||||||.++..+++. +..+|+|+|+|+.|++.+.+.. +++.. ...|+..+. ++..+
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~--~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD--DRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC--TTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--cccceecccCceecchhhCCCCC
Confidence 33444444346889999999999999999887 4569999999999999865431 23322 223443332 23456
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc-cCCC--chhHhh--HhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG-PVYP--TFWLSR--FFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~-~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
||+|++..+++++ ..+|.++.++|||||++++.. +... ...... ...+........+++.++++++||.+..
T Consensus 152 fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 152 PSFASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG 228 (291)
T ss_dssp CSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9999998887754 689999999999999998862 1111 111000 0011111123578899999999999887
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
+..-
T Consensus 229 ~~~s 232 (291)
T 3hp7_A 229 LDFS 232 (291)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7664
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=129.80 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------CCCCCcEEEEcCCCC-CC--CCCCCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------EPLKECTIIEGDAED-LP--FPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---------~~~~~i~~~~~d~~~-~~--~~~~~f 179 (340)
.++.+|||||||+|.++..+++.+|+..|+|+|+|+.+++.|+++ ....|++++++|+.+ ++ +++++|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 356789999999999999999998889999999999999998754 234689999999986 55 678899
Q ss_pred cEEEecCcccccCC--------HHHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPD--------PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|.|++...-.+... ...+++++.++|||||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99987543322211 13699999999999999998754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=132.77 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=101.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC--cEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....+ +++.++|+.+. +++++||+|+++...+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 46889999999999999998887 4499999999999999998732211 88999998652 3467899999976554
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+ ...+++++.++|||||++++.+.... +.+++.+.++++||+++++...+
T Consensus 196 ~---~~~~l~~~~~~LkpgG~lils~~~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 245 (254)
T 2nxc_A 196 L---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp H---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred H---HHHHHHHHHHHcCCCCEEEEEeeccC----------------CHHHHHHHHHHCCCEEEEEeccC
Confidence 3 45789999999999999999764321 36788999999999998887754
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-16 Score=135.56 Aligned_cols=145 Identities=21% Similarity=0.113 Sum_probs=93.7
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEE-cCCCCCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIE-GDAEDLPFP 175 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~-~d~~~~~~~ 175 (340)
.++.......++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++... .++.+.. .|+..
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~---- 101 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ---- 101 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS----
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc----
Confidence 33444444446789999999999999999988 335999999999999998875321 1222222 22221
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh-Hh------hhHhhcCCCHHHHHHHHHHCC
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-FF------ADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~l~~aG 248 (340)
..||.+.+..++.++ ..+++++.++|||||++++.. .+...... .. .+......+.+++.++++++|
T Consensus 102 -~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aG 175 (232)
T 3opn_A 102 -GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLG 175 (232)
T ss_dssp -CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCC
Confidence 124544444444433 679999999999999998863 11111000 00 011111236789999999999
Q ss_pred CcEEEEEEeC
Q 019479 249 FKDVKLKRIG 258 (340)
Q Consensus 249 F~~v~~~~~~ 258 (340)
|+++.+....
T Consensus 176 f~v~~~~~~p 185 (232)
T 3opn_A 176 FSVKGLTFSP 185 (232)
T ss_dssp EEEEEEEECS
T ss_pred CEEEEEEEcc
Confidence 9988877653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=135.08 Aligned_cols=135 Identities=15% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++... .+++++++|+.+.+..+++||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 6789999999999999999998 67999999999999999987432 2489999999887666688999999999887
Q ss_pred -----cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 -----WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 -----~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+...+++++.++|||||+++++....... ...+..... ++..+ ++.||++++.....
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~--~~~l~~~f~------~v~~l-~~~gF~Vl~a~~~~ 374 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKY--EPLLEEKFG------AFQTL-KVAEYKVLFAEKRG 374 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCH--HHHHHHHHS------CCEEE-EESSSEEEEEECC-
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh--HHHHHHhhc------cEEEE-eCCCEEEEEEEEec
Confidence 4455689999999999999999985443221 111111111 11122 66788887776654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=127.37 Aligned_cols=130 Identities=19% Similarity=0.279 Sum_probs=101.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-------CCcEEEEcCCCCC-------CCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------KECTIIEGDAEDL-------PFPTD 177 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~i~~~~~d~~~~-------~~~~~ 177 (340)
.++.+|||+|||+|.++..++++.|+.+|+|+|+++.+++.|+++... ++++++++|+.+. .++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 367899999999999999999998889999999999999999988654 2589999999876 24577
Q ss_pred CccEEEecCccccc------------------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHH
Q 019479 178 YADRYVSAGSIEYW------------------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239 (340)
Q Consensus 178 ~fD~v~~~~~l~~~------------------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
+||+|+++-.+... .+...+++.+.++|||||++++..+.. ...+
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~ 177 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-----------------SVAE 177 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-----------------GHHH
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-----------------HHHH
Confidence 89999998443322 235688999999999999998874321 2345
Q ss_pred HHHHHHHCCCcEEEEEEeCC
Q 019479 240 YIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 240 ~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.+.+++. |..+++..+..
T Consensus 178 ~~~~l~~~-~~~~~i~~v~~ 196 (260)
T 2ozv_A 178 IIAACGSR-FGGLEITLIHP 196 (260)
T ss_dssp HHHHHTTT-EEEEEEEEEES
T ss_pred HHHHHHhc-CCceEEEEEcC
Confidence 66777765 88777776543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-15 Score=138.74 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=98.9
Q ss_pred HhhhhhhhhhhhhcccCC-CCchHHHHHHhccccCCCCCCCEEEEEcCc------cchHHHHHHHh-CCCceEEEEeCCH
Q 019479 76 AFWFYRFLSIVYDHVINP-GHWTEDMRDEALEPADLFDRNMRVVDVGGG------TGFTTLGIVKH-VDAKNVTILDQSP 147 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~-~~~~~v~g~D~s~ 147 (340)
.+..|+..+..|...-.. .++.....+.++.... .++.+||||||| +|..+..+++. +|+.+|+|+|+|+
T Consensus 180 ~~~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp 257 (419)
T 3sso_A 180 RKPDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD 257 (419)
T ss_dssp CCCCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCccHHHHHHHhCCCcccccchHHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence 344566667777532221 2223344455554443 367899999999 77777777765 5889999999999
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCCCCCCC------CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 148 HQLAKAKQKEPLKECTIIEGDAEDLPFP------TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 148 ~~~~~a~~~~~~~~i~~~~~d~~~~~~~------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.|. ...++++++++|+.++++. +++||+|++.. .|++.+....|++++++|||||++++.+..
T Consensus 258 ~m~------~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 258 KSH------VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CGG------GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred HHh------hcCCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 983 1347899999999987766 68899999864 577778889999999999999999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=126.86 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=103.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|+++. .. ++++++.+|+.+. +++++||+|++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~-- 187 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFL-- 187 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEE--
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEE--
Confidence 46889999999999999999998 46789999999999999999873 22 5789999999775 56678999998
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+.+++..+++++.++|+|||++++..+... ...++.+.++++||..+++...-
T Consensus 188 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------~~~~~~~~l~~~gf~~~~~~~~~ 240 (277)
T 1o54_A 188 ---DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVWESL 240 (277)
T ss_dssp ---CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEECCC
T ss_pred ---CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHHCCCceeEEEEEe
Confidence 456778899999999999999999875321 23566778889999988877653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-14 Score=121.26 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC---CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP---FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~ 186 (340)
+++.+|||+|||+|.++..+++.. +.++|+|+|+|+.+++...+.. ...|+.++++|+.... ...++||+|++..
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 578999999999999999999875 4679999999998854332111 1268999999997532 1246899999875
Q ss_pred cccccCCHHHHH-HHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQRGI-KEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~~~l-~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.. ++...++ ..+.+.|||||++++....... ..........++..+.|+++||++++...+.+
T Consensus 155 a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~-------d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p 218 (232)
T 3id6_C 155 AQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI-------DVTKDPKEIYKTEVEKLENSNFETIQIINLDP 218 (232)
T ss_dssp CC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------CCSSSSTTHHHHHHHHTTEEEEEEEECTT
T ss_pred CC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc-------ccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 43 4555555 4556699999999987422110 00000111224556788899999999888754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=121.19 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=96.6
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
..++.+|||+|||+|.++..+++.+ ++.+++++|+++ +++. .+++++++|+.+.+ +++++||+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------VGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 3578899999999999999999985 568999999998 6532 67899999998765 66788999
Q ss_pred EEecCcccccCCH-----------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 182 YVSAGSIEYWPDP-----------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 182 v~~~~~l~~~~d~-----------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
|+++..+++..+. ..+++++.++|+|||.+++..+... ...++.+.+++. |.
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~~~~-~~ 154 (180)
T 1ej0_A 92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------------GFDEYLREIRSL-FT 154 (180)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------------THHHHHHHHHHH-EE
T ss_pred EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC----------------cHHHHHHHHHHh-hh
Confidence 9999998888776 6889999999999999998765433 234555666663 77
Q ss_pred EEEEE
Q 019479 251 DVKLK 255 (340)
Q Consensus 251 ~v~~~ 255 (340)
.+++.
T Consensus 155 ~~~~~ 159 (180)
T 1ej0_A 155 KVKVR 159 (180)
T ss_dssp EEEEE
T ss_pred hEEee
Confidence 66654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=123.36 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~ 176 (340)
....++..+.. .++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++. ...+++++.+|+.+.+..+
T Consensus 65 ~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 65 MVARMTELLEL-TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 34444444443 47889999999999999999998 789999999999999999873 3457999999998766567
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++||+|++..+++++.+ ++.+.|||||++++....
T Consensus 142 ~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 88999999999999875 689999999999998654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=128.94 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.|+++. .. .+++++++|+.+++. +++||+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 46899999999999999999998433 7999999999999999763 22 348899999988765 678999998643
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.+...+++++.++|||||++++.+....... .....+++.+.++++||+...
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc----------cccHHHHHHHHHHHcCCeeEE
Confidence 3446789999999999999998875432110 012467788999999999766
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-15 Score=136.12 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=90.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~ 173 (340)
..+...+...... .++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++.. ..+++++++|+++++
T Consensus 49 ~~~~~~i~~~~~~-~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 125 (376)
T 3r0q_C 49 DAYFNAVFQNKHH-FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS 125 (376)
T ss_dssp HHHHHHHHTTTTT-TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC
T ss_pred HHHHHHHHhcccc-CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC
Confidence 3444555444433 47899999999999999999998 34599999999 99999987632 245999999999887
Q ss_pred CCCCCccEEEecCccccc---CCHHHHHHHHHHhcccCcEEEEE
Q 019479 174 FPTDYADRYVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
++ ++||+|++..+.+++ .+...+++++.++|||||++++.
T Consensus 126 ~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 126 LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 66 789999997655555 45778999999999999999764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=126.24 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=106.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC----C--CCCcEEEEcCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----P--LKECTIIEGDAEDLP 173 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~----~--~~~i~~~~~d~~~~~ 173 (340)
...++..+.. .++.+|||+|||+|.++..+++.. |+.+|+++|+++.+++.|+++. . ..+++++++|+.+.+
T Consensus 88 ~~~i~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGDI-FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcCC-CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3444444443 478899999999999999999864 5789999999999999999873 2 468999999998877
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH-CCCcEE
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK-AGFKDV 252 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aGF~~v 252 (340)
+++++||+|++ +.+++..+++++.++|+|||++++..+... ...++.+.+++ .||..+
T Consensus 167 ~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVT----------------QLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHHSSBCCC
T ss_pred CCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------HHHHHHHHHHhcCCcCCc
Confidence 77788999998 456777899999999999999999875421 12344455665 899877
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
+..+..
T Consensus 226 ~~~~~~ 231 (280)
T 1i9g_A 226 RAWETL 231 (280)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 766543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-15 Score=124.49 Aligned_cols=139 Identities=11% Similarity=-0.065 Sum_probs=100.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CC-CcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LK-ECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~-~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..++...|+.+|+++|+|+.|++.+++++. .. ++++ .|.... .+.++||+|++..+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKM 124 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhH
Confidence 35789999999999999999999899999999999999999998742 22 3444 666443 35678999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+|++++.+..+.++.+.|||||.++-...-.-... . ..+...-...|++.+ ...+.+++...++..
T Consensus 125 LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr-~-----~gm~~~Y~~~~~~~~-~~~~~~~~~~~~~nE 190 (200)
T 3fzg_A 125 LPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGK-E-----KGMEENYQLWFESFT-KGWIKILDSKVIGNE 190 (200)
T ss_dssp HHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC---C-----TTCCCCHHHHHHHHT-TTTSCEEEEEEETTE
T ss_pred HHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCC-C-----cchhhhHHHHHHHhc-cCcceeeeeeeeCce
Confidence 99996667778899999999998866541110000 0 000011234555555 667777777777644
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=134.98 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=84.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. . .++++++++|++++++++++||+|++..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 6889999999999999999998 55699999999 4999998763 2 245999999999988888999999997654
Q ss_pred ---cccCCHHHHHHHHHHhcccCcEEEE
Q 019479 189 ---EYWPDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 189 ---~~~~d~~~~l~~~~~~LkpgG~l~i 213 (340)
++..+...+++++.++|||||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 4447888999999999999999863
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=126.29 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=105.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeC-CHHHHHHHHHhC-----CC--------CCcEE
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKE-----PL--------KECTI 164 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~-----~~--------~~i~~ 164 (340)
.+...+...... .++.+|||+|||+|.++..+++. +..+|+++|+ |+.+++.++++. .. .++++
T Consensus 66 ~l~~~l~~~~~~-~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 66 ALADTLCWQPEL-IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHCGGG-TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHhcchh-cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 344444443322 36789999999999999988886 3359999999 899999999875 22 26778
Q ss_pred EEcCCCCCC--C----CCCCccEEEecCcccccCCHHHHHHHHHHhcc---c--CcEEEEEccCCCchhHhhHhhhHhhc
Q 019479 165 IEGDAEDLP--F----PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK---I--GGKACVIGPVYPTFWLSRFFADVWML 233 (340)
Q Consensus 165 ~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~ 233 (340)
...|..+.. + .+++||+|++..++++.++...+++.+.++|| | ||++++........ .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~-~---------- 212 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH-L---------- 212 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC----------------
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc-c----------
Confidence 866654421 1 35789999999999999999999999999999 9 99987753321100 0
Q ss_pred CCCHHHHHHHHHHCC-CcEEEEEEe
Q 019479 234 FPKEEEYIEWFQKAG-FKDVKLKRI 257 (340)
Q Consensus 234 ~~~~~~~~~~l~~aG-F~~v~~~~~ 257 (340)
.....++.+.++++| |+++.+...
T Consensus 213 ~~~~~~~~~~l~~~G~f~v~~~~~~ 237 (281)
T 3bzb_A 213 AERDLAFFRLVNADGALIAEPWLSP 237 (281)
T ss_dssp ---CTHHHHHHHHSTTEEEEEEECC
T ss_pred chhHHHHHHHHHhcCCEEEEEeccc
Confidence 012345667889999 998877554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=134.28 Aligned_cols=108 Identities=25% Similarity=0.272 Sum_probs=88.1
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~ 177 (340)
..+...... .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. . .++++++++|+.+++++++
T Consensus 54 ~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPHI-FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGGG-TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhhh-cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 344443333 46889999999999999999987 446999999996 999998763 2 2679999999999888878
Q ss_pred CccEEEecC---cccccCCHHHHHHHHHHhcccCcEEE
Q 019479 178 YADRYVSAG---SIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 178 ~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~ 212 (340)
+||+|++.. .+.+..+...+++++.++|||||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999876 45555667789999999999999987
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=120.10 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---------------
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------------- 173 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------------- 173 (340)
..++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.. ..++++++++|+.+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CCCCceEEEccccchhhhhhccccccccccc
Confidence 35778999999999999999999987 6899999999832 2367899999998765
Q ss_pred ----------CCCCCccEEEecCcccccC----CHH-------HHHHHHHHhcccCcEEEEEcc
Q 019479 174 ----------FPTDYADRYVSAGSIEYWP----DPQ-------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ----------~~~~~fD~v~~~~~l~~~~----d~~-------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+++++||+|++..++++.. +.. .+++++.++|||||++++...
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 4567899999988777642 222 378999999999999988643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=118.28 Aligned_cols=137 Identities=18% Similarity=0.070 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC---CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP---FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~---~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.++++.. .++++++++|+.+.. ...++||+|++..
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 478899999999999999999886 45899999999999998887643 268999999997631 1245799999865
Q ss_pred cccccCCHH-HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQ-RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
. .++.. .+++++.++|||||++++........ ...... ....+++.++ +++ |++++...+.+
T Consensus 152 ~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~-----~~~~~~l~~l-~~~-f~~~~~~~~~~ 214 (227)
T 1g8a_A 152 A---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSID-VTKEPE-----QVFREVEREL-SEY-FEVIERLNLEP 214 (227)
T ss_dssp C---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-TTSCHH-----HHHHHHHHHH-HTT-SEEEEEEECTT
T ss_pred C---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCC-CCCChh-----hhhHHHHHHH-Hhh-ceeeeEeccCc
Confidence 4 23443 45999999999999998872111100 000000 0124566666 777 99998888753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-14 Score=119.95 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCC-CCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAED-LPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~-~~~~~~~fD~v~~~~ 186 (340)
+++.+|||||||+|..+..++...|..+|+++|+++.+++.|+++. .. .++++..+|..+ ++. .++||+|+...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG 92 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAG 92 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcC
Confidence 4678999999999999999999877789999999999999999873 22 469999999854 332 22699998765
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+... -...++.++.+.|+++|++++.... ..+.+.++|.+.||.+++..-+
T Consensus 93 ~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~------------------~~~~vr~~L~~~Gf~i~~e~lv 143 (225)
T 3kr9_A 93 MGGR--LIARILEEGLGKLANVERLILQPNN------------------REDDLRIWLQDHGFQIVAESIL 143 (225)
T ss_dssp ECHH--HHHHHHHHTGGGCTTCCEEEEEESS------------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred CChH--HHHHHHHHHHHHhCCCCEEEEECCC------------------CHHHHHHHHHHCCCEEEEEEEE
Confidence 5332 1457899999999999999886431 4678889999999999887644
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=120.54 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++. . .+++++.++|..+...++++||+|+..++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4788999999999999999999866679999999999999999873 2 24699999999775544447999887655
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
... -...++....+.|+++|++++.... ..+.++++|.+.||.+++..-+
T Consensus 100 Gg~--lI~~IL~~~~~~l~~~~~lIlqp~~------------------~~~~lr~~L~~~Gf~i~~E~lv 149 (230)
T 3lec_A 100 GGR--LIADILNNDIDKLQHVKTLVLQPNN------------------REDDLRKWLAANDFEIVAEDIL 149 (230)
T ss_dssp CHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHTTEEEEEEEEE
T ss_pred chH--HHHHHHHHHHHHhCcCCEEEEECCC------------------ChHHHHHHHHHCCCEEEEEEEE
Confidence 442 2357888899999999999887532 4678899999999999887755
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=127.99 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=110.5
Q ss_pred CCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEc
Q 019479 92 NPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEG 167 (340)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~ 167 (340)
.+....+.+...++..... .++.+|||+|||+|.++..++... +..+++|+|+++.+++.|+++. ...+++++++
T Consensus 183 ~~a~l~~~la~~l~~~~~~-~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~ 261 (354)
T 3tma_A 183 LRGSLTPVLAQALLRLADA-RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA 261 (354)
T ss_dssp SSCSCCHHHHHHHHHHTTC-CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC
T ss_pred CCCCcCHHHHHHHHHHhCC-CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 3344555566666665554 468899999999999999999986 6789999999999999999873 3237999999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCC--------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHH
Q 019479 168 DAEDLPFPTDYADRYVSAGSIEYWPD--------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239 (340)
Q Consensus 168 d~~~~~~~~~~fD~v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
|+.+++.+.+.||+|+++-.+..... ...+++++.++|||||++++..+ +.+.
T Consensus 262 D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-------------------~~~~ 322 (354)
T 3tma_A 262 DARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-------------------RPAL 322 (354)
T ss_dssp CGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-------------------CHHH
T ss_pred ChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-------------------CHHH
Confidence 99988766777999999765543211 15789999999999999999864 2334
Q ss_pred HHHHHHHCCCcEEEEEEe
Q 019479 240 YIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 240 ~~~~l~~aGF~~v~~~~~ 257 (340)
+.+.++ .||+..+...+
T Consensus 323 ~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 323 LKRALP-PGFALRHARVV 339 (354)
T ss_dssp HHHHCC-TTEEEEEEEEC
T ss_pred HHHHhh-cCcEEEEEEEE
Confidence 455555 89988776655
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=121.45 Aligned_cols=111 Identities=21% Similarity=0.173 Sum_probs=90.0
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC-CcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-ECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~i~~~~~d~~~~~~~~~ 177 (340)
.+...++..+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.... +++++++|+.+....++
T Consensus 57 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 57 NLGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCC
Confidence 344444554443 47889999999999999999998 489999999999999999884432 79999999976333467
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+||+|++..+++++. .++.++|||||++++.....
T Consensus 134 ~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 134 PYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 899999999999886 46899999999999986543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-14 Score=120.94 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=85.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CCC-C----CCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LPF-P----TDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~~-~----~~~fD~ 181 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.. .++++++++|+.+ ++. . .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 578999999999999999999764 7899999999999999998632 2469999999844 222 2 268999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++....++..+....+..+ ++|||||++++.+...
T Consensus 138 V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99998887776666778888 9999999998876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-15 Score=124.01 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC--CCcEEEEcCCCCCC--CCCCC-ccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL--KECTIIEGDAEDLP--FPTDY-ADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~--~~i~~~~~d~~~~~--~~~~~-fD~v~~ 184 (340)
++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|+++. .. ++++++++|+.++. ..+++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 5689999999999999987776 2469999999999999999873 32 57999999986643 23578 999999
Q ss_pred cCcccccCCHHHHHHHH--HHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEA--YRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~--~~~LkpgG~l~i~~~~ 217 (340)
...++ ..+...+++.+ .++|||||.+++....
T Consensus 132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 88754 56667888988 6789999999987644
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=124.41 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=94.5
Q ss_pred CCCEEEEEcCccchHHHHHHHh----CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC---CCCC-CCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL---PFPT-DYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~---~~~~-~~fD~v~~ 184 (340)
++.+|||||||+|..+..+++. .++.+|+++|+|+.+++.|+.. ..+++++++|+.+. +... .+||+|++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--MENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--CTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--CCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 4679999999999999999987 5779999999999999888732 36899999999874 4333 37999998
Q ss_pred cCcccccCCHHHHHHHHHH-hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC--CCcE
Q 019479 185 AGSIEYWPDPQRGIKEAYR-VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA--GFKD 251 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~ 251 (340)
... | .+...+++++.+ +|||||++++.+.. ..+.. .+.+.+.+++++. +|+.
T Consensus 159 d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~-----------~~~~~-~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI-----------PYWYR-YAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH-----------HHHHH-HCHHHHHHHHHTTTTTEEE
T ss_pred CCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc-----------ccccc-cCHHHHHHHHHhCcccEEE
Confidence 665 3 377889999997 99999999987651 00100 1345778888887 5664
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=130.32 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--------------CCCcEEEEcCCCCC--CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECTIIEGDAEDL--PF 174 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--------------~~~i~~~~~d~~~~--~~ 174 (340)
.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++.. ..+++++.+|+.+. ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 478899999999999999999985 55899999999999999998643 25799999999875 45
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-HhhHhhh----------------HhhcC---
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFAD----------------VWMLF--- 234 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~----------------~~~~~--- 234 (340)
++++||+|++. ..++..+++++.++|||||++++..+...... ....+.. .|...
T Consensus 184 ~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~ 258 (336)
T 2b25_A 184 KSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAK 258 (336)
T ss_dssp ----EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCCCCCEEECC--
T ss_pred CCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEecccceEEEeec
Confidence 66789999984 33455689999999999999998766432211 0111111 01111
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 235 PKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....++.+.|+++||+++++....
T Consensus 259 ~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 259 QKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp ------------------------
T ss_pred ccccchhhhhcccccccccccccc
Confidence 111278889999999999887764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=126.81 Aligned_cols=111 Identities=23% Similarity=0.256 Sum_probs=91.0
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
....++..+.. .++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++. ...+++++.+|+.+.+..
T Consensus 63 ~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 63 LMALFMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHhcCC-CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 34444444443 4788999999999999999999865 367999999999999999873 345699999999875545
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++||+|++..+++++. +++.+.|||||++++....
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 67899999999999986 5788999999999998543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-14 Score=122.94 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----------CCCCcEEEEcCCCC-CC--CCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------PLKECTIIEGDAED-LP--FPTD 177 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----------~~~~i~~~~~d~~~-~~--~~~~ 177 (340)
.++.+|||||||+|.++..+++..|...|+|+|+|+.+++.++++. ...|++++++|+.+ ++ +..+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3678999999999999999999988889999999999999998652 33689999999976 55 6678
Q ss_pred CccEEEecCcccccCCH-------------HHHHHHHHHhcccCcEEEEEc
Q 019479 178 YADRYVSAGSIEYWPDP-------------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~-------------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++|.|++.. +++ ..+++++.++|||||+|++..
T Consensus 128 ~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 899998643 333 479999999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-15 Score=121.47 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCC-CCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAED-LPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~-~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++... ++++++.+|+.+ ++...++||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 36789999999999999999987 557999999999999999987422 368999999866 333446799999987
Q ss_pred cccccCCHHHHHHHHH--HhcccCcEEEEEccCC
Q 019479 187 SIEYWPDPQRGIKEAY--RVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~--~~LkpgG~l~i~~~~~ 218 (340)
.++. .+....++.+. ++|||||++++.....
T Consensus 109 ~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 6532 34456777777 9999999999886543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=130.47 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=88.4
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCCCCCCCCC
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~~~~~~~~ 178 (340)
+..+.. .++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++... .+++++.+|+.+ ++++++
T Consensus 215 l~~l~~-~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~ 292 (375)
T 4dcm_A 215 MQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFR 292 (375)
T ss_dssp HHTCCC-SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTC
T ss_pred HHhCcc-cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCC
Confidence 444433 245899999999999999999998889999999999999999987421 257889999977 456778
Q ss_pred ccEEEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEccCC
Q 019479 179 ADRYVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
||+|+++..+|+.... ..+++++.++|||||+++++....
T Consensus 293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 9999999888863222 368999999999999999976443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=120.78 Aligned_cols=120 Identities=9% Similarity=0.025 Sum_probs=90.9
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~ 172 (340)
...+...++..+....++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|+++.. .++++++++|+.+.
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 106 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence 34444444444432236789999999999999988885 45799999999999999997632 24689999998663
Q ss_pred C----CCCCCccEEEecCcccccCCHHHHHHHH--HHhcccCcEEEEEccCC
Q 019479 173 P----FPTDYADRYVSAGSIEYWPDPQRGIKEA--YRVLKIGGKACVIGPVY 218 (340)
Q Consensus 173 ~----~~~~~fD~v~~~~~l~~~~d~~~~l~~~--~~~LkpgG~l~i~~~~~ 218 (340)
. ..+++||+|+++..++ ..+....++.+ .++|||||++++.....
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2 2267899999987754 45667778887 88999999999876543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-14 Score=120.14 Aligned_cols=126 Identities=15% Similarity=0.097 Sum_probs=101.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+++.+|||||||+|.++..+++..+..+|+++|+++.+++.|+++. . .+++++.++|..+...++.+||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4778999999999999999999866679999999999999999873 2 24599999999765433446999987554
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
... -...++.+..+.|++++++++.... ..+.++++|.+.||.+++...+
T Consensus 100 Gg~--lI~~IL~~~~~~L~~~~~lIlq~~~------------------~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 100 GGT--LIRTILEEGAAKLAGVTKLILQPNI------------------AAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp CHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------CHHHHHHHHHHHTEEEEEEEEE
T ss_pred chH--HHHHHHHHHHHHhCCCCEEEEEcCC------------------ChHHHHHHHHHCCCEEEEEEEE
Confidence 431 2347889999999999999888532 4678889999999999776654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=118.46 Aligned_cols=111 Identities=24% Similarity=0.255 Sum_probs=88.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
....++..+.. .++.+|||||||+|.++..+++.. +..+|+++|+++.+++.++++. ...+++++.+|+......
T Consensus 65 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 65 MVGMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 33444444433 478899999999999999999986 4489999999999999999763 335799999998543323
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++||+|++..+++++. +++.++|||||++++....
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 57899999999999886 4889999999999988643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=130.35 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=92.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHh---CC--CCCcEEE
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-------KQK---EP--LKECTII 165 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~---~~--~~~i~~~ 165 (340)
......++..+.. .++.+|||||||+|..+..+++.++..+|+|+|+++.+++.| +++ .. ..+++++
T Consensus 228 p~~v~~ml~~l~l-~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 228 PNFLSDVYQQCQL-KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 3445555555544 478899999999999999999987667899999999999888 655 23 3689999
Q ss_pred EcCCCCC--CC--CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 166 EGDAEDL--PF--PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 166 ~~d~~~~--~~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
++|.... ++ ..++||+|+++.++ +.++....|+++.++|||||++++.++..+
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred EcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 8765422 12 24679999998766 346777889999999999999999865443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=129.56 Aligned_cols=98 Identities=28% Similarity=0.293 Sum_probs=82.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS- 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~- 187 (340)
++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. . .++++++.+|++++++++++||+|++..+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 6789999999999999999887 45699999999 5889888763 2 24699999999988877788999998754
Q ss_pred --ccccCCHHHHHHHHHHhcccCcEEE
Q 019479 188 --IEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 188 --l~~~~d~~~~l~~~~~~LkpgG~l~ 212 (340)
+.+..+...++.++.++|||||+++
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 4455667889999999999999997
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=123.90 Aligned_cols=104 Identities=14% Similarity=0.043 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhCCCC-------C----------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEPLK-------E---------------------- 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~-------~---------------------- 161 (340)
++.+|||+|||+|.++..+++. .++.+|+|+|+|+.+++.|+++.... +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999987 66789999999999999999763322 1
Q ss_pred ---cE-------------EEEcCCCCCCC-----CCCCccEEEecCcccccCC---------HHHHHHHHHHhcccCcEE
Q 019479 162 ---CT-------------IIEGDAEDLPF-----PTDYADRYVSAGSIEYWPD---------PQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 162 ---i~-------------~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~~d---------~~~~l~~~~~~LkpgG~l 211 (340)
++ ++++|+.+... ...+||+|+++..+++..+ ...+++++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 66 99999976321 3447999999877766544 248999999999999999
Q ss_pred EEEcc
Q 019479 212 CVIGP 216 (340)
Q Consensus 212 ~i~~~ 216 (340)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 98643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=126.22 Aligned_cols=134 Identities=20% Similarity=0.187 Sum_probs=99.4
Q ss_pred hhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
.||+....+....+.++..++.+.+.++..... .++.+|||+|||+|..+..+++. |+.+|+|+|+|+.+++.|+++.
T Consensus 89 ~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~-~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~ 166 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIRK-YGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNA 166 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHHH-HTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHH
T ss_pred EECCeEEEeCCCceecChhHHHHHHHHHHHhcc-cCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 444443333445566777777777777765532 25679999999999999999999 8899999999999999999873
Q ss_pred ---CCC-CcEEEEcCCCCCCCCCCCc---cEEEecCccc-----------ccC--------CHHHHHHHHH-HhcccCcE
Q 019479 158 ---PLK-ECTIIEGDAEDLPFPTDYA---DRYVSAGSIE-----------YWP--------DPQRGIKEAY-RVLKIGGK 210 (340)
Q Consensus 158 ---~~~-~i~~~~~d~~~~~~~~~~f---D~v~~~~~l~-----------~~~--------d~~~~l~~~~-~~LkpgG~ 210 (340)
... +++++++|+.+. ++ ++| |+|+++--.. |-+ |...+++++. +.|+|||+
T Consensus 167 ~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~ 244 (284)
T 1nv8_A 167 ERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKI 244 (284)
T ss_dssp HHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCE
T ss_pred HHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCE
Confidence 223 499999999762 22 478 9999972211 211 1227899999 99999999
Q ss_pred EEEEc
Q 019479 211 ACVIG 215 (340)
Q Consensus 211 l~i~~ 215 (340)
+++..
T Consensus 245 l~~e~ 249 (284)
T 1nv8_A 245 VLMEI 249 (284)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-14 Score=126.07 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~-- 185 (340)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++. ...+++++++|+.+++..+++||+|++.
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 4788999999999999999999864 489999999999999999773 3457999999998765446689999984
Q ss_pred ----CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 ----GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 ----~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.++++.++. ..+++++.++|||||++++.+..... ..+.+.+...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~-------------~Ene~~v~~~l~ 263 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-------------EENEFVIQWALD 263 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------------GGTHHHHHHHHH
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-------------HHhHHHHHHHHh
Confidence 223322221 47899999999999999987654321 114456677888
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
+.||+.+.+
T Consensus 264 ~~~~~~~~~ 272 (315)
T 1ixk_A 264 NFDVELLPL 272 (315)
T ss_dssp HSSEEEECC
T ss_pred cCCCEEecC
Confidence 889876644
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=120.23 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=83.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++. ...+++++++|+.+ ++..+++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 56899999999999999887772 359999999999999999773 23579999999866 45556789999998774
Q ss_pred cccCCHHHHHHHHHH--hcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYR--VLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~--~LkpgG~l~i~~~ 216 (340)
+ ..+...+++.+.+ +|+|||++++...
T Consensus 133 ~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 133 R-RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp S-TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred C-CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 4 5677788888876 5999999988754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=120.20 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=86.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P-FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~-~~~~~fD~v~~~~ 186 (340)
++.+|||||||+|..+..+++..++.+|+++|+++.+++.|+++. .. ++++++++|+.+. + ..+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 678999999999999999999777899999999999999999863 22 4799999999764 3 3367899999764
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
. ..+...+++++.++|||||++++.+...
T Consensus 151 ~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 151 A---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp T---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred c---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 3 4566789999999999999998865443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=127.39 Aligned_cols=111 Identities=18% Similarity=0.201 Sum_probs=88.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~ 175 (340)
+...++..... .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. . .++++++.+|+++++++
T Consensus 38 y~~~i~~~l~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 114 (348)
T 2y1w_A 38 YQRAILQNHTD-FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP 114 (348)
T ss_dssp HHHHHHHTGGG-TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred HHHHHHhcccc-CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence 44445554443 36789999999999999999886 457999999996 888888662 2 26799999999987755
Q ss_pred CCCccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~ 214 (340)
++||+|++..+++|+.+ ....+.++.++|||||++++.
T Consensus 115 -~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 115 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp -SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred -CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 57999999988887753 457888999999999999854
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=120.65 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=85.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCC-CCCC--CCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAED-LPFP--TDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~-~~~~--~~~fD~v~~ 184 (340)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|+++. .. ++++++++|+.+ ++.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 678999999999999999999987 789999999999999999873 22 479999999865 3322 348999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
... ..+...+++++.++|||||+|++.+...
T Consensus 143 d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 143 DAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp CSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred CCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 653 4456689999999999999998876543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-15 Score=131.19 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=105.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .. ++++++++|+.+++ ++++||+|+++..+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 6789999999999999999997 689999999999999999773 22 47999999998765 56789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++..+....+.++.++|+|||.+++..... .............+.+++..++...|...++.....
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~----~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~ 220 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLSKK----ITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLN 220 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHHHH----HCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEET
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHHHh----hCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhc
Confidence 998887778889999999999965432100 000000001113367788888888887776665554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=113.04 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.. +++++++|+.+++ ++||+|+++..++++.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--GVNFMVADVSEIS---GKYDTWIMNPPFGSVV 124 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCC---CCEEEEEECCCC----
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC--CCEEEECcHHHCC---CCeeEEEECCCchhcc
Confidence 6789999999999999999887 44589999999999999998875 8999999998864 6799999999999886
Q ss_pred CH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 193 DP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 193 d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+. ..+++++.+++ |+ +++.... . +.+.+.+.++++| +...+..
T Consensus 125 ~~~~~~~l~~~~~~~--g~-~~~~~~~--~---------------~~~~~~~~~~~~g-~~~~~~~ 169 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MW-IYSIGNA--K---------------ARDFLRREFSARG-DVFREEK 169 (200)
T ss_dssp ---CHHHHHHHHHHE--EE-EEEEEEG--G---------------GHHHHHHHHHHHE-EEEEEEE
T ss_pred CchhHHHHHHHHHhc--Cc-EEEEEcC--c---------------hHHHHHHHHHHCC-CEEEEEE
Confidence 53 47889999988 44 4444311 1 2345667888888 5544443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=118.86 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC--CCcEEEEcCCCCC-C-CCCCCccEEEec
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL--KECTIIEGDAEDL-P-FPTDYADRYVSA 185 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~--~~i~~~~~d~~~~-~-~~~~~fD~v~~~ 185 (340)
+.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++. .. ++++++++|+.+. + +.+++||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 44999999999999999999875 789999999999999999773 22 4799999998653 2 336789999986
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.. ..+...+++++.++|||||++++.+..
T Consensus 137 ~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 137 VS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp CC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred Cc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 53 345667999999999999999886543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=118.44 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=100.9
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~ 178 (340)
.++..... .++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++. .. +++++..+|+.+....+++
T Consensus 82 ~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNL-NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCC-CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 33333333 47889999999999999999998 789999999999999999763 22 5789999999774435678
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
||+|++ +.+++..+++++.++|||||++++..+... ...++.+.+++. |..++..+.
T Consensus 159 ~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~l~~~-f~~~~~~~~ 215 (248)
T 2yvl_A 159 FHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPTAN----------------QVIKLLESIENY-FGNLEVVEI 215 (248)
T ss_dssp BSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESSHH----------------HHHHHHHHSTTT-EEEEEEEEE
T ss_pred ccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------HHHHHHHHHHhh-CCcceEEEe
Confidence 999997 455777899999999999999999875421 123455566666 887776655
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=118.16 Aligned_cols=102 Identities=13% Similarity=0.205 Sum_probs=86.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-CCC--CCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-PFP--TDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~~~--~~~fD~v~~~ 185 (340)
++.+|||+|||+|..+..+++.+|+.+|+++|+++.+++.|+++. .. .+++++.+|+.+. +.. +++||+|++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 678999999999999999999988899999999999999999873 22 4699999999763 322 5689999997
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+ +...+++++.++|||||++++.+..
T Consensus 134 ~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 134 AAKG---QYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp GGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 6653 7789999999999999999997644
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-13 Score=123.09 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=106.1
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAE 170 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~ 170 (340)
...+.+...++... ..++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|+++. .. ++++++++|+.
T Consensus 201 ~l~~~la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~ 278 (373)
T 3tm4_A 201 HLKASIANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT 278 (373)
T ss_dssp CCCHHHHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred CccHHHHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 34455555555555 35788999999999999999999855459999999999999999873 22 47899999999
Q ss_pred CCCCCCCCccEEEecCcccccC----CH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHH
Q 019479 171 DLPFPTDYADRYVSAGSIEYWP----DP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIE 242 (340)
Q Consensus 171 ~~~~~~~~fD~v~~~~~l~~~~----d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (340)
+++.++++||+|+++-.++... +. ..+++++.++| ||.++++.. +.+.+.+
T Consensus 279 ~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------~~~~~~~ 337 (373)
T 3tm4_A 279 QLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------EKKAIEE 337 (373)
T ss_dssp GGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------CHHHHHH
T ss_pred hCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------CHHHHHH
Confidence 9887778999999976544321 11 46788888888 555555532 4567788
Q ss_pred HHHHCCCcEEEEEEe
Q 019479 243 WFQKAGFKDVKLKRI 257 (340)
Q Consensus 243 ~l~~aGF~~v~~~~~ 257 (340)
.+++.||+..+...+
T Consensus 338 ~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 338 AIAENGFEIIHHRVI 352 (373)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCEEEEEEEE
Confidence 999999998877665
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=122.48 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=84.7
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCC--CCCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDL--PFPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l 188 (340)
+.+|||||||+|..+..+++.+|+.+++++|+++.+++.|++++. .++++++++|..++ .+++++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 349999999999999999998889999999999999999999864 36799999998653 2346789999986433
Q ss_pred cccCC----HHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPD----PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d----~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.... ...++++++++|||||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 32111 25899999999999999988754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=127.38 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+.+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++... .+++++.+|+.+.+ +++||+|+++..+|+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGRFDMIISNPPFHD 273 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSCEEEEEECCCCCS
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCCeeEEEECCCccc
Confidence 46799999999999999999997778999999999999999987422 23678889986643 678999999999885
Q ss_pred -----cCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 191 -----WPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 191 -----~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
..+...+++++.++|||||++++.....
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 3345689999999999999999986543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=116.54 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCCCCCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++.. ..+++++++|+...+...++||+|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 478899999999999999999885 34799999999999999987632 357999999997655556789999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++...++++. +++.++|||||++++....
T Consensus 156 ~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 156 HVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred EECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 9998887663 6889999999999987543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=116.28 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC-CCCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~-~~~~~~fD~v~~~~ 186 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.. .++++++++|+.+. +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 568999999999999999999887 7899999999999999997632 24689999998653 43446 99999874
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
. ..+...+++++.++|||||++++.+...
T Consensus 135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D---VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp T---TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred C---hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2 4577899999999999999998876443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=117.71 Aligned_cols=109 Identities=28% Similarity=0.385 Sum_probs=87.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~ 176 (340)
+...++..+.. .++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|+++ ....+++++.+|+. .++++
T Consensus 79 ~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~ 155 (235)
T 1jg1_A 79 MVAIMLEIANL-KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KGFPP 155 (235)
T ss_dssp HHHHHHHHHTC-CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GCCGG
T ss_pred HHHHHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cCCCC
Confidence 44444444443 4678999999999999999999865 8999999999999999986 33457999999973 33343
Q ss_pred -CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 177 -DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 177 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.+||+|++..+++++. +++.+.|||||++++....
T Consensus 156 ~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEec
Confidence 3599999999998876 4789999999999988654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-14 Score=116.08 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCC-C-C--CCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDL-P-F--PTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~-~-~--~~~~fD~v~~~~ 186 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... .+++++++|+.+. + . ..++||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 6789999999999999999998 45599999999999999976321 1789999998662 2 1 134799999988
Q ss_pred cccccCCHHHHHHHHH--HhcccCcEEEEEccCCC
Q 019479 187 SIEYWPDPQRGIKEAY--RVLKIGGKACVIGPVYP 219 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~--~~LkpgG~l~i~~~~~~ 219 (340)
.++ .+....++.+. ++|||||++++......
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 776 56667777777 99999999998865543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=117.30 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCCCC----C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLP----F 174 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~~~----~ 174 (340)
.++.+|||||||+|.++..+++.. |..+|+++|+++.+++.|+++.. ..+++++.+|+.+.. .
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence 478899999999999999999985 34699999999999999997732 467999999997754 4
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..++||+|++...++++ ++++.+.|||||++++...
T Consensus 159 ~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 56789999999998875 4788999999999988754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=117.28 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=84.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-CC---CCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P-FP---TDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~-~~---~~~fD~v 182 (340)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|+++. .. ++++++++|+.+. + +. .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 678999999999999999999987 789999999999999998763 33 4599999998542 1 11 2579999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++.... .+...+++++.++|||||++++.+...
T Consensus 138 ~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 138 FIDADK---QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EECSCG---GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 987653 355689999999999999998876543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=120.92 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=97.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCC-CCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPF-PTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~-~~~~fD~v~~~~~ 187 (340)
++.+|||+| |+|.++..++...+..+|+++|+++.+++.|+++. ...+++++++|+.+ ++. .+++||+|+++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 578999999 99999999998866689999999999999999873 22379999999987 653 3568999999876
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCH---HHHHHHHH-HCCCcEEEEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKE---EEYIEWFQ-KAGFKDVKLKR 256 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~aGF~~v~~~~ 256 (340)
++.. ....+++++.++|||||++++...... ..+. ..+.+.+. +.||....+..
T Consensus 251 ~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~g~~~~~~~~ 308 (373)
T 2qm3_A 251 ETLE-AIRAFVGRGIATLKGPRCAGYFGITRR--------------ESSLDKWREIQKLLLNEFNVVITDIIR 308 (373)
T ss_dssp SSHH-HHHHHHHHHHHTBCSTTCEEEEEECTT--------------TCCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred CchH-HHHHHHHHHHHHcccCCeEEEEEEecC--------------cCCHHHHHHHHHHHHHhcCcchhhhhh
Confidence 6544 257899999999999995533332220 0123 45667777 89998765543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=112.25 Aligned_cols=99 Identities=23% Similarity=0.188 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCC---------ceEEEEeCCHHHHHHHHHhCCCCCcEEE-EcCCCCCC-------
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDA---------KNVTILDQSPHQLAKAKQKEPLKECTII-EGDAEDLP------- 173 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~i~~~-~~d~~~~~------- 173 (340)
..++.+|||+|||+|.++..+++.++. .+|+|+|+|+.. ...+++++ .+|+...+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------PLEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------cCCCCeEEEeccCCCHHHHHHHHH
Confidence 357889999999999999999999754 799999999832 12578899 89986542
Q ss_pred -CCCCCccEEEecCcccc----cCCH-------HHHHHHHHHhcccCcEEEEEccC
Q 019479 174 -FPTDYADRYVSAGSIEY----WPDP-------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 -~~~~~fD~v~~~~~l~~----~~d~-------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++++||+|++...++. ..+. ..+++++.++|||||++++....
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 23468999999665443 2233 37899999999999999988653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=117.59 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC------ceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCCCCCCC-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLPFPT- 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~~~~~~- 176 (340)
.++.+|||||||+|.++..+++..+. .+|+++|+++.+++.++++.. ..+++++.+|..+ ++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence 47889999999999999999987542 599999999999999987632 3579999999976 3344
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++||+|++...++++. +++.+.|||||++++...
T Consensus 162 ~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 7899999999998875 789999999999988754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=125.31 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=89.4
Q ss_pred hcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcE
Q 019479 88 DHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECT 163 (340)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~ 163 (340)
..+++....+..+...+......+ ++++|||||||+|.++..+++. +..+|+|+|.|+ +++.|++.. ...+|+
T Consensus 59 ~~ML~D~~Rt~aY~~Ai~~~~~~~-~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~ 135 (376)
T 4hc4_A 59 EEMIADRVRTDAYRLGILRNWAAL-RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVH 135 (376)
T ss_dssp HHHHHCHHHHHHHHHHHHTTHHHH-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEE
T ss_pred HHHhCCHHHHHHHHHHHHhCHHhc-CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEE
Confidence 334444444455555555443332 6899999999999999887776 446899999986 778887652 235699
Q ss_pred EEEcCCCCCCCCCCCccEEEec---CcccccCCHHHHHHHHHHhcccCcEEE
Q 019479 164 IIEGDAEDLPFPTDYADRYVSA---GSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 164 ~~~~d~~~~~~~~~~fD~v~~~---~~l~~~~d~~~~l~~~~~~LkpgG~l~ 212 (340)
++.+|++++.++ ++||+|++. ..+.+-.....++....+.|||||.++
T Consensus 136 ~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 136 VLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp EEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 999999998765 579999984 344444566788999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=119.54 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++. ...++.++++|+.+.+. .++||+|++....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 5788999999999999999999876779999999999999999763 33578999999987743 5689999987654
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+...++.++.+.|||||++++.....
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 56678999999999999999876543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-14 Score=136.38 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=87.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCC--CCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~ 187 (340)
++.+|||||||.|.++..|++. |++|+|+|+|+.+++.|+..+. .-+++|.+++++++ ...+++||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 5689999999999999999998 8999999999999999997643 23689999999886 356778999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++|++|+. ..+..+.+.|+++|+.++....
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 99999886 3355677888888887776543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=110.97 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=76.1
Q ss_pred cCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-----------C
Q 019479 108 ADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-----------T 176 (340)
Q Consensus 108 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-----------~ 176 (340)
....+++.+|||+|||+|.++..+++. +.+|+|+|+++.. ..++++++++|+.+.+.. .
T Consensus 20 ~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (191)
T 3dou_A 20 YRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------EIAGVRFIRCDIFKETIFDDIDRALREEGI 89 (191)
T ss_dssp HCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------CCTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred cCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------cCCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence 334457899999999999999999988 7899999998742 236899999999875411 1
Q ss_pred CCccEEEecCcccccC----C-------HHHHHHHHHHhcccCcEEEEEccC
Q 019479 177 DYADRYVSAGSIEYWP----D-------PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~----d-------~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++||+|++........ | ...+++.+.++|||||.+++....
T Consensus 90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 4899999965332211 1 136788999999999999887543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=129.62 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=88.7
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLP 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~ 173 (340)
+.+...++..... .++.+|||||||+|.++..+++. +..+|+|+|+|+ +++.|+++. . .++++++.+|+++++
T Consensus 144 ~~~~~~il~~l~~-~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~ 220 (480)
T 3b3j_A 144 GTYQRAILQNHTD-FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS 220 (480)
T ss_dssp HHHHHHHHHTGGG-TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred HHHHHHHHHhhhh-cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc
Confidence 3344445554433 36789999999999999998885 567999999998 888888762 2 267999999998876
Q ss_pred CCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEE
Q 019479 174 FPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i 213 (340)
++ ++||+|++..+++++.+. ...+.++.++|||||++++
T Consensus 221 ~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 221 LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred cC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 54 579999998887877554 4678889999999999985
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=116.84 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=84.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-CCC----CCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P-FPT----DYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~-~~~----~~fD~ 181 (340)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|+++. .. ++++++++|+.+. + +.. ++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 578999999999999999999887 789999999999999999773 22 4599999998542 2 111 68999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
|++... ..+...+++++.++|||||++++.+....
T Consensus 144 v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 144 IYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 997653 34567899999999999999998876543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=121.99 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~--~~~~~~fD~v 182 (340)
..+.+|||||||+|..+..+++..+..+|+++|+|+.+++.|+++.. .++++++++|+.+. ...+++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 35789999999999999999988667899999999999999998752 46899999998653 2345789999
Q ss_pred EecCcc--cccCC--HHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSI--EYWPD--PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l--~~~~d--~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++.... +...+ ...+++++.++|||||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 986442 11111 3589999999999999999873
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=118.62 Aligned_cols=133 Identities=17% Similarity=0.059 Sum_probs=98.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++. ..++++++.+|+.+ ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 578999999999999999998766689999999999999999875 24689999999865 3334578999999
Q ss_pred cCcccccCC----HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 185 AGSIEYWPD----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 185 ~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+..+. ...+++++.++|||||++++....... ... ....+.+.+++. |..+......
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~--~~~----------~~~~~~~~l~~~-F~~v~~~~~~ 219 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF--TPE----------LITNVQRDVKEI-FPITKLYTAN 219 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT--CHH----------HHHHHHHHHHTT-CSEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc--cHH----------HHHHHHHHHHHh-CCCeEEEEEe
Confidence 654332221 257999999999999999887532110 000 123455667776 7777766543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.8e-14 Score=121.49 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCC-CCC-----CCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDL-PFP-----TDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~-~~~-----~~~fD~ 181 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++. . .++++++++|+.+. +.. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 578999999999999999999875 789999999999998888763 2 25799999999653 211 478999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++... ..+...+++++.++|||||++++.+...
T Consensus 140 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 140 IFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp EEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred EEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 998754 3456688999999999999999976543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=122.54 Aligned_cols=133 Identities=18% Similarity=0.133 Sum_probs=97.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCC-CCCCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAED-LPFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~-~~~~~~~fD~v~ 183 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 5689999999999999999998667899999999999999998752 4689999999865 333467899999
Q ss_pred ecCcccc-cCC------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 184 SAGSIEY-WPD------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 184 ~~~~l~~-~~d------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+....+. ... ...+++++.++|||||++++........ . ......+.+.+++. |..+....
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~----------~~~~~~~~~~l~~~-F~~v~~~~ 224 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT-H----------HRVHPVVHRTVREA-FRYVRSYK 224 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------------CHHHHHHHHHHTT-CSEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcccc-C----------HHHHHHHHHHHHHH-CCceEEEE
Confidence 9765543 111 2588999999999999999874221100 0 01234455666666 66665544
Q ss_pred e
Q 019479 257 I 257 (340)
Q Consensus 257 ~ 257 (340)
.
T Consensus 225 ~ 225 (314)
T 1uir_A 225 N 225 (314)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-13 Score=117.51 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCC----CCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPF----PTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~----~~~~fD~v~ 183 (340)
.++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++ ....+++++++|+.+++. ..++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 46889999999999999999998766 8999999999999999876 334589999999976543 256899999
Q ss_pred ecCc------cc------------ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 184 SAGS------IE------------YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 184 ~~~~------l~------------~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
+.-. +. .......+++++.++|||||++++.+..... ..+.+.+...++
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~-------------~ene~~v~~~l~ 228 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV-------------EENEEVIKYILQ 228 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT-------------TSSHHHHHHHHH
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh-------------HHhHHHHHHHHH
Confidence 8622 21 1134568999999999999999987654321 124455566665
Q ss_pred H-CCCcEEE
Q 019479 246 K-AGFKDVK 253 (340)
Q Consensus 246 ~-aGF~~v~ 253 (340)
+ .+|+.+.
T Consensus 229 ~~~~~~~~~ 237 (274)
T 3ajd_A 229 KRNDVELII 237 (274)
T ss_dssp HCSSEEEEC
T ss_pred hCCCcEEec
Confidence 5 3566543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=118.10 Aligned_cols=104 Identities=20% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC-CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL-PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~-~~~~~~fD~v~~ 184 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++++|+.+. +..+++||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 5689999999999999999987667899999999999999998854 36799999998552 223578999998
Q ss_pred cCcccc--cCCH--HHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEY--WPDP--QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~--~~d~--~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...-.. ..+. ..+++++.++|||||++++...
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 643211 1111 6899999999999999998743
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=121.53 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=99.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC--CCCCCccEEEe-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP--FPTDYADRYVS- 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v~~- 184 (340)
.++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++ ....+++++++|+.+++ +++++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 46889999999999999999998766 8999999999999999876 34468999999998765 44578999996
Q ss_pred -----cCcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHH
Q 019479 185 -----AGSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEW 243 (340)
Q Consensus 185 -----~~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (340)
..++++.++. ..+++++.++|||||++++.+...... .+.+.+...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~-------------ene~~v~~~ 404 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE-------------ENEKNIRWF 404 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG-------------GTHHHHHHH
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------------hHHHHHHHH
Confidence 2344444443 468999999999999999886544311 144566677
Q ss_pred HHHC-CCcEEE
Q 019479 244 FQKA-GFKDVK 253 (340)
Q Consensus 244 l~~a-GF~~v~ 253 (340)
+++. ||+.+.
T Consensus 405 l~~~~~~~~~~ 415 (450)
T 2yxl_A 405 LNVHPEFKLVP 415 (450)
T ss_dssp HHHCSSCEECC
T ss_pred HHhCCCCEEee
Confidence 7776 787643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=117.89 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P-F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~-~-----~~~~fD 180 (340)
++.+|||||||+|..+..+++.+| +.+|+++|+++.+++.|+++. .. ++++++.+|+.+. + + .+++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 568999999999999999999987 789999999999999999763 22 4689999998653 2 1 157899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|++... ..+...+++++.++|||||++++.+..
T Consensus 159 ~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 159 FIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp EEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 9998754 346678999999999999999887643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=105.26 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.++++.... +++++++|+.+++ ++||+|+++..++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 36789999999999999999887 3458999999999999999875422 6899999998864 4799999998887
Q ss_pred ccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
... ....+++++.+++ |+ +++....... +.+.+.+.+++.||+...+...
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~~~---------------~~~~~~~~l~~~g~~~~~~~~~ 175 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DV-VYSIHLAKPE---------------VRRFIEKFSWEHGFVVTHRLTT 175 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SE-EEEEEECCHH---------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCCchHHHHHHHHHhc--Cc-EEEEEeCCcC---------------CHHHHHHHHHHCCCeEEEEEEE
Confidence 764 3357889999988 44 4443311110 2445667889999987766554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-13 Score=119.22 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEE--EcCCCCCCCCCCCccEEE
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTII--EGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~--~~d~~~~~~~~~~fD~v~ 183 (340)
..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .++.++ ++|+.+++ +++||+|+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 357889999999999999999887 5899999998 54333322110 178999 99998765 67899999
Q ss_pred ecCcccccCCHH-------HHHHHHHHhcccCc--EEEEEccC
Q 019479 184 SAGSIEYWPDPQ-------RGIKEAYRVLKIGG--KACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~~d~~-------~~l~~~~~~LkpgG--~l~i~~~~ 217 (340)
+..+ ++..++. .+|+++.++||||| .+++....
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9877 5443331 37899999999999 88886544
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-13 Score=121.60 Aligned_cols=103 Identities=23% Similarity=0.222 Sum_probs=81.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 5689999999999999999988677899999999999999998853 3679999999865 2334678999998
Q ss_pred cCcccccCCH----HHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDP----QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..++. ..+++++.++|+|||++++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 6532211111 578999999999999999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-13 Score=120.92 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCC--CcEEEEcCCCCCCC----CCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK--ECTIIEGDAEDLPF----PTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~--~i~~~~~d~~~~~~----~~~~fD~v~ 183 (340)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++. ... +++++++|+.++.. ..++||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 5789999999999999999986 569999999999999999873 222 48999999976421 156899999
Q ss_pred ecCc----------ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGS----------IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~----------l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.-. .++..+...+++++.++|||||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 9533 122344568999999999999998776543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-13 Score=119.48 Aligned_cols=104 Identities=21% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC-CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL-PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~-~~~~~~fD~v~~ 184 (340)
++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+. +...++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 5689999999999999999987667899999999999999998854 46899999998652 223578999998
Q ss_pred cCcccccCCH----HHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.. ..+++++.++|||||++++...
T Consensus 158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5443322211 5899999999999999998854
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-13 Score=118.71 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=76.5
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEE--EcCCCCCCCCCCCccEE
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTII--EGDAEDLPFPTDYADRY 182 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~--~~d~~~~~~~~~~fD~v 182 (340)
...++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.... .++.++ ++|+.+++ +++||+|
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V 144 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVI 144 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEE
Confidence 3457889999999999999998887 6899999998 53333222110 168999 99998865 6789999
Q ss_pred EecCcccccCCHH-------HHHHHHHHhcccCc--EEEEEccC
Q 019479 183 VSAGSIEYWPDPQ-------RGIKEAYRVLKIGG--KACVIGPV 217 (340)
Q Consensus 183 ~~~~~l~~~~d~~-------~~l~~~~~~LkpgG--~l~i~~~~ 217 (340)
++..+ ++..++. .+|+++.++||||| .+++....
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99877 5444431 37899999999999 88886544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-13 Score=120.30 Aligned_cols=103 Identities=22% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++.+|+.+ ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998752 4689999999865 3334678999998
Q ss_pred cCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+. ...+++++.++|||||++++..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 654332211 2368999999999999999875
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=118.94 Aligned_cols=132 Identities=13% Similarity=0.018 Sum_probs=94.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++.. .++++++++|+.+ ++..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 5689999999999999999988667899999999999999998752 4689999999855 3334578999998
Q ss_pred cCcccccC-----CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 185 AGSIEYWP-----DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 185 ~~~l~~~~-----d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....++.. ....+++++.++|||||++++....... ... ....+.+.+++. |..+.....
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~----------~~~~~~~~l~~~-F~~v~~~~~ 234 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY--DIG----------WFKLAYRRISKV-FPITRVYLG 234 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTT--THH----------HHHHHHHHHHHH-CSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCccc--CHH----------HHHHHHHHHHHH-CCceEEEEe
Confidence 53322121 1258899999999999999987533110 000 123444556665 777666554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=117.01 Aligned_cols=115 Identities=13% Similarity=0.034 Sum_probs=86.3
Q ss_pred CCCCEEEEEcC------ccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCCcEE-EEcCCCCCCCCCCCccEEE
Q 019479 112 DRNMRVVDVGG------GTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECTI-IEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc------G~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~i~~-~~~d~~~~~~~~~~fD~v~ 183 (340)
+++.+|||+|| |+|. ..+++..+ +.+|+|+|+|+. + +++++ +++|+.++++. ++||+|+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------SDADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------CSSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------CCCEEEEECccccCCcc-CcccEEE
Confidence 57889999999 4476 44566665 589999999987 1 47889 99999887654 6799999
Q ss_pred ecCcccc-----------cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 184 SAGSIEY-----------WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 184 ~~~~l~~-----------~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
++...+. ......+++++.++|||||++++...... ..+++.+.+++.||..+
T Consensus 129 sn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------~~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 129 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------WNADLYKLMGHFSWWTA 192 (290)
T ss_dssp ECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------------CCHHHHHHHTTEEEEEE
T ss_pred EcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------------CHHHHHHHHHHcCCcEE
Confidence 9643221 11124789999999999999998654322 23577889999999877
Q ss_pred EEE
Q 019479 253 KLK 255 (340)
Q Consensus 253 ~~~ 255 (340)
++.
T Consensus 193 ~~~ 195 (290)
T 2xyq_A 193 FVT 195 (290)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=118.19 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------------CCCCcEEEEcCCCCC-CCCCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------------PLKECTIIEGDAEDL-PFPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------------~~~~i~~~~~d~~~~-~~~~~~ 178 (340)
.+.+|||||||+|..+..+++. +..+|+++|+++.+++.|+++. ..++++++.+|+.+. +. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 5689999999999999999998 7789999999999999999886 346799999998542 22 577
Q ss_pred ccEEEecCcccccC--C--HHHHHHHHHHhcccCcEEEEEc
Q 019479 179 ADRYVSAGSIEYWP--D--PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 179 fD~v~~~~~l~~~~--d--~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
||+|++....+..+ . ...+++++.++|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999865432211 1 2578999999999999998874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=115.81 Aligned_cols=93 Identities=16% Similarity=-0.003 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.+.+|||||||+|..+..+++. + .+|+++|+++.+++.|+++.. .++++++.+|..+.. ++||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 5689999999999999999988 7 899999999999999987753 367999999997754 779999985
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..++..+++++.++|||||++++..
T Consensus 147 -----~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3466779999999999999998864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=112.12 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC----CCCCC--CCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED----LPFPT--DYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~----~~~~~--~~fD~ 181 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++. . .++++++.+|+.+ ++..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 567999999999999999999876 689999999999999998763 2 2468999999743 22223 68999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++... ..+...+++++.++|+|||++++.+...
T Consensus 152 V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 998754 3456789999999999999999876543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=111.71 Aligned_cols=126 Identities=18% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+++.+|||+|||+|.++..++.. +..+|+++|+++.+++.++++. + .++++++++|..+++ ..+.||.|+++..
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC
Confidence 57999999999999999999987 4579999999999999999773 2 356899999998865 4567999998643
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.....++..+.++||+||+|.+.+....... .....+.+.+..++.|+++..
T Consensus 202 ----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~----------~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----CcHHHHHHHHHHHcCCCCEEEEEeeeccccc----------chhHHHHHHHHHHHcCCcEEE
Confidence 2334678889999999999876544322110 012356778888999998643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=113.14 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P------------- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~------------- 173 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++. .. .+++++.+|+.+. +
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 678999999999999999999986 689999999999999999873 22 3489999998542 1
Q ss_pred -CCC--CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 174 -FPT--DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 -~~~--~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++ ++||+|++.... .+...+++++.++|||||++++.+..
T Consensus 140 ~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp TTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred cccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 789999987543 35568899999999999999987644
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=111.39 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCC-C-CCC----CCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDL-P-FPT----DYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~-~-~~~----~~fD~ 181 (340)
++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++. . ..+++++++|+.+. + +.. ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 678999999999999999999876 689999999999999999763 2 25799999998542 1 111 67999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|++... ..+...+++++.++|+|||++++.+..
T Consensus 149 v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 149 AVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 998654 345678999999999999999987654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=113.01 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=83.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCC-C-C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDL-P-F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~-~-~-----~~~~fD 180 (340)
++.+|||||||+|..+..+++..| +.+|+++|+++.+++.|+++. .. ++++++.+|+.+. + + ..++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 578999999999999999999987 689999999999999999763 22 4689999998652 2 1 157899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|++... ..+...+++++.++|||||++++.+..
T Consensus 150 ~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 150 FGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred EEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 9998643 235578999999999999999887643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-12 Score=107.34 Aligned_cols=134 Identities=9% Similarity=-0.051 Sum_probs=99.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+.+|||||||.|-++..++...|..+|+++|+++.+++.+++++. ..+.++...|...-+ +.++||+|++.-++++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 5789999999999999999998889999999999999999998742 244788899986644 5677999999999999
Q ss_pred cCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 191 WPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 191 ~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+++.. ..+ ++.+.|+|+|.++-... ..-......+... -.+.|++.+.+.|....+.
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~-ksl~Grs~gm~~~-----Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPT-KSLGQRSKGMFQN-----YSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEEC-C-------CHHHH-----HHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccc-hhhcCCCcchhhH-----HHHHHHHHHHhcCCceeee
Confidence 97764 455 89999999988865543 1100000111111 1467888888899954443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=116.78 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeC----CHHHHHHHH-HhCCCCCcEEEEc-CCCCCCCCCCCccEE
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ----SPHQLAKAK-QKEPLKECTIIEG-DAEDLPFPTDYADRY 182 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~----s~~~~~~a~-~~~~~~~i~~~~~-d~~~~~~~~~~fD~v 182 (340)
...+++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. +....+++.++++ |+..++ .++||+|
T Consensus 78 ~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V 152 (305)
T 2p41_A 78 NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTL 152 (305)
T ss_dssp TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEE
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEE
Confidence 33457889999999999999999887 48999999 554432221 1112256899999 887664 5689999
Q ss_pred EecCccc---ccCCHH---HHHHHHHHhcccCcEEEEEccC
Q 019479 183 VSAGSIE---YWPDPQ---RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 183 ~~~~~l~---~~~d~~---~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++..+.+ +..|.. .+|+++.++|||||.+++....
T Consensus 153 ~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 153 LCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp EECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred EECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 9976653 222222 4788999999999998886443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=116.40 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=69.2
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~ 174 (340)
.+...++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++... ++++++++|+.+.++
T Consensus 15 ~i~~~i~~~~~~-~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 15 LIINSIIDKAAL-RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHHHHHTCC-CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHhcCC-CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 345555555544 46789999999999999999998 67999999999999999987432 579999999987765
Q ss_pred CCCCccEEEecCccc
Q 019479 175 PTDYADRYVSAGSIE 189 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~ 189 (340)
+ +||+|+++..++
T Consensus 92 ~--~fD~vv~nlpy~ 104 (285)
T 1zq9_A 92 P--FFDTCVANLPYQ 104 (285)
T ss_dssp C--CCSEEEEECCGG
T ss_pred h--hhcEEEEecCcc
Confidence 4 699999975444
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=114.72 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC--CCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP--FPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~--~~~~~fD~v~~~-- 185 (340)
.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++.. .-++.++++|+.+.+ +++++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 324 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 324 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCC
Confidence 47889999999999999999999777899999999999999987632 125789999998765 455789999972
Q ss_pred ----CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 ----GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 ----~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.++++.++. ..+++++.+.|||||++++.+...... .+.+.+...++
T Consensus 325 csg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-------------ene~~v~~~l~ 391 (429)
T 1sqg_A 325 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------------ENSLQIKAFLQ 391 (429)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------------GTHHHHHHHHH
T ss_pred CCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------------hHHHHHHHHHH
Confidence 333444442 378999999999999999887543211 13445556666
Q ss_pred HC-CCcEE
Q 019479 246 KA-GFKDV 252 (340)
Q Consensus 246 ~a-GF~~v 252 (340)
+. +|+.+
T Consensus 392 ~~~~~~~~ 399 (429)
T 1sqg_A 392 RTADAELC 399 (429)
T ss_dssp HCTTCEEC
T ss_pred hCCCCEEe
Confidence 64 57654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-11 Score=115.72 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC-CCCCccEEEec--
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF-PTDYADRYVSA-- 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~-~~~~fD~v~~~-- 185 (340)
++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++. ...++.++++|+.+++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 688999999999999999999864 479999999999999998763 34679999999987653 45689999983
Q ss_pred ----CcccccCC----------------HHHHHHHHHHhcccCcEEEEEccC
Q 019479 186 ----GSIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 186 ----~~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.++...++ ...+|+++.++|||||+|++.+..
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 12222222 136899999999999999987654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=102.35 Aligned_cols=139 Identities=14% Similarity=-0.047 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||||||+|.++..++ +..+|+|+|+++.+++.++++. ...+.++...|....+.+ ++||+|++.-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHH
Confidence 367899999999999999877 6899999999999999999873 236678899999876644 4799999999999
Q ss_pred ccCCHH-HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcc
Q 019479 190 YWPDPQ-RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261 (340)
Q Consensus 190 ~~~d~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 261 (340)
++++.+ ...-++.+.|+++|.++-.. ...-......+.. .-...|++.+ ...+.+++...++...
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVsfP-tksl~Gr~~gm~~-----~Y~~~~e~~~-~~~~~~~~~~~~~nEl 245 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVSFP-TRSLGGRGKGMEA-----NYAAWFEGGL-PAEFEIEDKKTIGTEL 245 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEEEE-CC----------------CHHHHHHHHS-CTTEEEEEEEEETTEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEEcC-hHHhcCCCcchhh-----HHHHHHHHHh-hccchhhhheecCceE
Confidence 996654 33448888999987765543 2110000000000 1123444444 5667777777776443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=118.51 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEec-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSA- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~- 185 (340)
.++.+|||+|||+|..+..+++..++ .+|+++|+|+.+++.++++. ... +.++++|+.+++ ...++||+|++.
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECC
Confidence 47889999999999999999998754 79999999999999998763 334 889999987654 245789999962
Q ss_pred -----CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH
Q 019479 186 -----GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 186 -----~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (340)
.++..-++. ..+|+++.++|||||+|+..+..... ..+.+.+..++
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~-------------eEne~vv~~~l 245 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP-------------EENEGVVAHFL 245 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-------------GGTHHHHHHHH
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch-------------hcCHHHHHHHH
Confidence 222222222 57899999999999999887654321 11456666777
Q ss_pred HHC-CCcEEEE
Q 019479 245 QKA-GFKDVKL 254 (340)
Q Consensus 245 ~~a-GF~~v~~ 254 (340)
++. +|+.+.+
T Consensus 246 ~~~~~~~l~~~ 256 (464)
T 3m6w_A 246 KAHPEFRLEDA 256 (464)
T ss_dssp HHCTTEEEECC
T ss_pred HHCCCcEEEec
Confidence 776 5776654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=114.60 Aligned_cols=132 Identities=13% Similarity=0.020 Sum_probs=93.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCC--CcEEEEcCCCCC-C-C--CCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK--ECTIIEGDAEDL-P-F--PTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~--~i~~~~~d~~~~-~-~--~~~~fD~v~ 183 (340)
++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.|+++. ... +++++++|+.+. + . ...+||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 6789999999999999999986 2358999999999999999873 223 799999998652 2 1 245799999
Q ss_pred ecCcc-----cccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 184 SAGSI-----EYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 184 ~~~~l-----~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.-.. .+..+. ..+++++.++|+|||.|++........ ... -.+.+.+.+.++|.++++.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~----------~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQ----------FKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHH----------HHHHHHHHHTTCCCEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHH----------HHHHHHHHHHHcCCcEEEe
Confidence 85433 233333 357788899999999998886443210 000 0234556677888884443
Q ss_pred EE
Q 019479 255 KR 256 (340)
Q Consensus 255 ~~ 256 (340)
..
T Consensus 360 ~~ 361 (385)
T 2b78_A 360 QQ 361 (385)
T ss_dssp EC
T ss_pred CC
Confidence 33
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.5e-12 Score=117.92 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++ ....++.++++|..+++ ..+++||+|++.-
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 47889999999999999999987654 7999999999999999876 33467899999987654 2357899999843
Q ss_pred c---cccc-CCH------------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH
Q 019479 187 S---IEYW-PDP------------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 187 ~---l~~~-~d~------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (340)
- ...+ .++ ..+|+++.++|||||+|+..+..... ..+.+.+..++
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~-------------eEne~vv~~~l 250 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP-------------EENEEIISWLV 250 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG-------------GGTHHHHHHHH
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc-------------ccCHHHHHHHH
Confidence 2 1111 111 16799999999999999887654321 12567778888
Q ss_pred HHCCCcEEEEE
Q 019479 245 QKAGFKDVKLK 255 (340)
Q Consensus 245 ~~aGF~~v~~~ 255 (340)
++.||+.+.+.
T Consensus 251 ~~~~~~l~~~~ 261 (456)
T 3m4x_A 251 ENYPVTIEEIP 261 (456)
T ss_dssp HHSSEEEECCC
T ss_pred HhCCCEEEecc
Confidence 99887766543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=115.09 Aligned_cols=132 Identities=16% Similarity=-0.003 Sum_probs=90.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|.++..+++. +..|+++|+|+.+++.|+++.... ..++.++|+.+.. ...+.||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 5899999999999999999987 666999999999999999874221 1357788886531 1133499999864432
Q ss_pred c---------cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 Y---------WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~---------~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
. ..+...+++.+.++|||||+|++........ ...+ .+.+.+.+.++|.....+...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~-~~~f----------~~~v~~a~~~~g~~~~i~~~~ 357 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR-LEDL----------LEVARRAAADLGRRLRVHRVT 357 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHH----------HHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-HHHH----------HHHHHHHHHHhCCeEEEEEEc
Confidence 1 1233478899999999999998765443211 0000 134455666777765444443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=111.79 Aligned_cols=131 Identities=17% Similarity=0.023 Sum_probs=94.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-C-CcEEEEcCCCCCCC----CCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-K-ECTIIEGDAEDLPF----PTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~-~i~~~~~d~~~~~~----~~~~fD~v~ 183 (340)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++. .. . +++++++|+.+... ...+||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999999999987 2469999999999999999873 22 3 78999999966421 146799999
Q ss_pred ecCcc---------cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 184 SAGSI---------EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 184 ~~~~l---------~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.-.. ....+...++.++.+.|+|||.+++........ ... ..+.+.+.+.++|+....+
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~----------~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-SDL----------FQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-HHH----------HHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHH----------HHHHHHHHHHHcCCeEEEE
Confidence 96322 223455688999999999999998876433211 000 1234556777888665444
Q ss_pred E
Q 019479 255 K 255 (340)
Q Consensus 255 ~ 255 (340)
.
T Consensus 368 ~ 368 (396)
T 3c0k_A 368 E 368 (396)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=113.24 Aligned_cols=131 Identities=20% Similarity=0.075 Sum_probs=94.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC----CCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF----PTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~----~~~~fD~v~~~ 185 (340)
++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++. ...+++++++|+.+... ...+||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5789999999999999999998 679999999999999999873 33458999999976421 15689999985
Q ss_pred Ccccc---------cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 186 GSIEY---------WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 186 ~~l~~---------~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
-.... ..+...++.++.++|+|||.+++........ ... -.+.+.+.+.++|.....+..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~----------~~~~i~~~~~~~g~~~~~i~~ 355 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPL----------FYAMVAEAAQDAHRLLRVVEK 355 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHH----------HHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-HHH----------HHHHHHHHHHHcCCeEEEEEc
Confidence 43211 1234578999999999999999886543211 000 023455677788865444433
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=109.37 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++.. ++ ++.+|+++|+|+.+++.++++. .. .+++++++|+.+.. ++||+|++...
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 3688999999999999999 77 4789999999999999999873 22 57999999998765 78999998632
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC-CCcEEEEEEe
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA-GFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-GF~~v~~~~~ 257 (340)
.. ...+++.+.++|+|||.+++.+.... .+...+.++++ ||+++.+...
T Consensus 268 ~~----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~~l~~~~~~~i~~~~~v 317 (336)
T 2yx1_A 268 KF----AHKFIDKALDIVEEGGVIHYYTIGKD-----------------FDKAIKLFEKKCDCEVLEKRIV 317 (336)
T ss_dssp TT----GGGGHHHHHHHEEEEEEEEEEEEESS-----------------SHHHHHHHHHHSEEEEEEEEEE
T ss_pred Hh----HHHHHHHHHHHcCCCCEEEEEEeecC-----------------chHHHHHHHHhcCCcEEEEEEE
Confidence 21 23789999999999999988765443 12334455555 7776555444
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=108.72 Aligned_cols=137 Identities=21% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC---
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED--- 171 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~--- 171 (340)
+.+...+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ...|++|+++|+.+
T Consensus 272 e~l~~~~~~~l~~-~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 272 QKMVARALEWLDV-QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHTC-CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred HHHHHHHHHhhcC-CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh
Confidence 3445555554443 36789999999999999999987 689999999999999999773 33589999999977
Q ss_pred -CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 172 -LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 172 -~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
+++.+++||+|+++--.... ..+++.+.+ ++|++.+++.... . +...-...|.+.||+
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p--~---------------tlard~~~l~~~Gy~ 407 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNP--A---------------TLARDSEALLKAGYT 407 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCH--H---------------HHHHHHHHHHHTTCE
T ss_pred hhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECCh--H---------------HHHhhHHHHHHCCcE
Confidence 23456789999985443322 245555543 6888888776421 0 111223466778999
Q ss_pred EEEEEEeC
Q 019479 251 DVKLKRIG 258 (340)
Q Consensus 251 ~v~~~~~~ 258 (340)
..++..+.
T Consensus 408 ~~~~~~~d 415 (433)
T 1uwv_A 408 IARLAMLD 415 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 98877764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=108.04 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=76.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~ 176 (340)
..+...++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++.. .++++++++|+.++++++
T Consensus 16 ~~~~~~i~~~~~~-~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 16 KHNIDKIMTNIRL-NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHHTTCCC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhCCC-CCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 3455666666654 46889999999999999999998 5899999999999999998854 368999999998887664
Q ss_pred -CCccEEEecCcccccCCHHHHHHHHHHhcccCcEE
Q 019479 177 -DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 177 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l 211 (340)
..| .|+++-.+ ++. ..++.++.+....++.+
T Consensus 93 ~~~~-~vv~nlPy-~~~--~~~l~~~l~~~~~~~~~ 124 (244)
T 1qam_A 93 NQSY-KIFGNIPY-NIS--TDIIRKIVFDSIADEIY 124 (244)
T ss_dssp SCCC-EEEEECCG-GGH--HHHHHHHHHSCCCSEEE
T ss_pred CCCe-EEEEeCCc-ccC--HHHHHHHHhcCCCCeEE
Confidence 345 45554433 332 23444444443333333
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=112.55 Aligned_cols=106 Identities=20% Similarity=0.075 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCC-CcEEEEcCCCCCCC----CCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLK-ECTIIEGDAEDLPF----PTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~-~i~~~~~d~~~~~~----~~~~fD~v~ 183 (340)
+++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|+++. ... +++++++|+.+... ..++||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36889999999999999999987 4469999999999999999873 223 78999999866421 256899999
Q ss_pred ecCcccc---------cCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 184 SAGSIEY---------WPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 184 ~~~~l~~---------~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+.-.... ..+...++.++.++|+|||.+++.....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 9543221 1344578999999999999998876543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-11 Score=109.01 Aligned_cols=136 Identities=16% Similarity=0.229 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-----KNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
++.+|||+|||+|.++..+++..+. .+++|+|+++.+++.|+.+.. ..++.++++|.... ...++||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 5689999999999999999887643 789999999999999997621 12678999998663 245789999999
Q ss_pred CcccccCCHH------------------HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC
Q 019479 186 GSIEYWPDPQ------------------RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 186 ~~l~~~~d~~------------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 247 (340)
-.++++++.+ .++.++.+.|||||+++++.+.. ... -.....+.+++.+.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~---~~~---------~~~~~~ir~~l~~~ 276 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---MFG---------TSDFAKVDKFIKKN 276 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---GGG---------STTHHHHHHHHHHH
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch---hcC---------CchHHHHHHHHHhC
Confidence 8876664332 57999999999999998886532 110 11357788888888
Q ss_pred CCcEEEEEEeCCccc
Q 019479 248 GFKDVKLKRIGPKWY 262 (340)
Q Consensus 248 GF~~v~~~~~~~~~~ 262 (340)
|+.. .+..+....+
T Consensus 277 ~~~~-~ii~lp~~~F 290 (344)
T 2f8l_A 277 GHIE-GIIKLPETLF 290 (344)
T ss_dssp EEEE-EEEECCGGGS
T ss_pred CeEE-EeeeCChhhc
Confidence 7643 3334443333
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=100.64 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=100.2
Q ss_pred CCCEEEEEcCccchHHHHHH--------HhC-------CCceEEEEeCCHHHHHHHHHhCCC---------------CC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPHQLAKAKQKEPL---------------KE- 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~--------~~~-------~~~~v~g~D~s~~~~~~a~~~~~~---------------~~- 161 (340)
.+.+|+|+|||+|.++..+. +++ |..+|..-|+-...-...=+.+.. .+
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 46899999999999988872 222 568999999865443222111110 01
Q ss_pred --cEEEEcCCCCCCCCCCCccEEEecCcccccC--------------------------------------CHHHHHHHH
Q 019479 162 --CTIIEGDAEDLPFPTDYADRYVSAGSIEYWP--------------------------------------DPQRGIKEA 201 (340)
Q Consensus 162 --i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~~~ 201 (340)
+.-+.+.+..-.++++++|+|+++.++||+. |...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556655568899999999999999986 334578899
Q ss_pred HHhcccCcEEEEEccCCCch-----------h---HhhHhhhH----------------hhcCCCHHHHHHHHH-HCCCc
Q 019479 202 YRVLKIGGKACVIGPVYPTF-----------W---LSRFFADV----------------WMLFPKEEEYIEWFQ-KAGFK 250 (340)
Q Consensus 202 ~~~LkpgG~l~i~~~~~~~~-----------~---~~~~~~~~----------------~~~~~~~~~~~~~l~-~aGF~ 250 (340)
++.|+|||++++......+. + +...+.++ ...+++.+++.+.++ +.||+
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999885543321 0 11111110 112578999999998 59999
Q ss_pred EEEEEEeCCcc
Q 019479 251 DVKLKRIGPKW 261 (340)
Q Consensus 251 ~v~~~~~~~~~ 261 (340)
+..++.....|
T Consensus 292 I~~le~~~~~~ 302 (374)
T 3b5i_A 292 IDKLVVYKGGS 302 (374)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEeecC
Confidence 98887765443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-11 Score=118.32 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=82.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CC--CCcEEEEcCCCC-CCCCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PL--KECTIIEGDAED-LPFPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~--~~i~~~~~d~~~-~~~~~~~fD~v~~~~ 186 (340)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++. .. .+++++++|+.+ ++...++||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 6889999999999999998885 3457999999999999999872 22 479999999976 333457899999854
Q ss_pred c-----------ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 187 S-----------IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~-----------l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. .....+...+++++.++|+|||+|++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2 223344567899999999999999977643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-10 Score=102.47 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCEEEEEcCccchHHHHHHHh-----------------CCCceEEEEeCC-----------HHHHHHHHHhCC-CCCcEE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKH-----------------VDAKNVTILDQS-----------PHQLAKAKQKEP-LKECTI 164 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~g~D~s-----------~~~~~~a~~~~~-~~~i~~ 164 (340)
..+|+|+||++|.++..+... .|..+|+..|+- +.+.+.+++... ..+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999999887765 356889999996 455554444322 123355
Q ss_pred EEcC---CCCCCCCCCCccEEEecCcccccCCHH---------------------------------------HHHHHHH
Q 019479 165 IEGD---AEDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------------RGIKEAY 202 (340)
Q Consensus 165 ~~~d---~~~~~~~~~~fD~v~~~~~l~~~~d~~---------------------------------------~~l~~~~ 202 (340)
+.+. +..-.++++++|+|+++.++||+.+.. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 444568899999999999999986542 1266668
Q ss_pred HhcccCcEEEEEccCCCch--------hHhhHhhhH----------------hhcCCCHHHHHHHHHHC-CCcEEEEEEe
Q 019479 203 RVLKIGGKACVIGPVYPTF--------WLSRFFADV----------------WMLFPKEEEYIEWFQKA-GFKDVKLKRI 257 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~----------------~~~~~~~~~~~~~l~~a-GF~~v~~~~~ 257 (340)
+.|+|||++++........ .+...+.++ ...+++.++++..++++ +|++.+++.+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF 292 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 9999999999986554433 222222111 12267899999999997 5888887766
Q ss_pred CCcc
Q 019479 258 GPKW 261 (340)
Q Consensus 258 ~~~~ 261 (340)
...|
T Consensus 293 ~~~~ 296 (384)
T 2efj_A 293 NAPY 296 (384)
T ss_dssp EEET
T ss_pred eecc
Confidence 4333
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=108.26 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
...++..+.. .++.+|||+|||+|.++..+++++ +..+++|+|+++.+++.| .+++++++|+.+.. ..++|
T Consensus 28 ~~~~~~~~~~-~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~~~~~~~~D~~~~~-~~~~f 99 (421)
T 2ih2_A 28 VDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PWAEGILADFLLWE-PGEAF 99 (421)
T ss_dssp HHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TTEEEEESCGGGCC-CSSCE
T ss_pred HHHHHHhhcc-CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------CCCcEEeCChhhcC-ccCCC
Confidence 3334443332 356799999999999999999876 568999999999998776 57899999997754 34679
Q ss_pred cEEEecCcccccC----------CH-------------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH
Q 019479 180 DRYVSAGSIEYWP----------DP-------------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230 (340)
Q Consensus 180 D~v~~~~~l~~~~----------d~-------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 230 (340)
|+|+++--..... +. ..+++++.++|+|||+++++.+.. +..
T Consensus 100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~---~l~------ 170 (421)
T 2ih2_A 100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT---WLV------ 170 (421)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG---GGT------
T ss_pred CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH---Hhc------
Confidence 9999963332211 11 156889999999999998886532 100
Q ss_pred hhcCCCHHHHHHHHHHCCC
Q 019479 231 WMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF 249 (340)
....+.+++.+.+.|+
T Consensus 171 ---~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 171 ---LEDFALLREFLAREGK 186 (421)
T ss_dssp ---CGGGHHHHHHHHHHSE
T ss_pred ---CccHHHHHHHHHhcCC
Confidence 0124567788888887
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.08 E-value=8.8e-13 Score=115.34 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCC-CCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPT-DYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~-~~fD~v~~~~~l~ 189 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.+++++. ++| .|+++-..+
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~ 104 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYH 104 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECCSS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCCcc
Confidence 36789999999999999999998 5899999999999999987653 357999999999887663 578 666653222
Q ss_pred -----------ccCCHHHHH----HHHHHhcccCcEEEEEc
Q 019479 190 -----------YWPDPQRGI----KEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 -----------~~~d~~~~l----~~~~~~LkpgG~l~i~~ 215 (340)
|..+....+ +.+.++|+|||.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 105 LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 222333344 66788888888775543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-10 Score=101.46 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=73.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~~ 177 (340)
.+...++..+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++. ..++++++++|+.++++++.
T Consensus 37 ~i~~~Iv~~l~~-~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 37 NFVNKAVESANL-TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHHhcCC-CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 455556665554 46889999999999999999998 689999999999999999874 34689999999998887777
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
+||.|+++..++
T Consensus 114 ~fD~Iv~NlPy~ 125 (295)
T 3gru_A 114 DFNKVVANLPYQ 125 (295)
T ss_dssp CCSEEEEECCGG
T ss_pred CccEEEEeCccc
Confidence 899999875554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-09 Score=101.28 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .. ++|+++|+.++.. . +||+|++.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-~-~fD~Vv~dPPr 363 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-K-GFDTVIVDPPR 363 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-T-TCSEEEECCCT
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-c-CCCEEEEcCCc
Confidence 46789999999999999999987 6799999999999999997742 23 8999999987642 2 79999985442
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
... ...+++.+. .|+|||.+++..
T Consensus 364 ~g~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 364 AGL--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred cch--HHHHHHHHH-hcCCCcEEEEEC
Confidence 211 124555554 589999998874
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=101.40 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=64.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~ 176 (340)
+...++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++. ..++++++++|+.++++
T Consensus 30 i~~~i~~~~~~-~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-- 104 (299)
T 2h1r_A 30 ILDKIIYAAKI-KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-- 104 (299)
T ss_dssp HHHHHHHHHCC-CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--
T ss_pred HHHHHHHhcCC-CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--
Confidence 34444444443 46789999999999999999987 679999999999999999763 34689999999987764
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
++||+|+++...+
T Consensus 105 ~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 105 PKFDVCTANIPYK 117 (299)
T ss_dssp CCCSEEEEECCGG
T ss_pred ccCCEEEEcCCcc
Confidence 4799999976554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=101.86 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=90.9
Q ss_pred CCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-----------------------------------
Q 019479 93 PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA----------------------------------- 137 (340)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------------------- 137 (340)
..+..+.+...++..... .++..|||++||+|.+++.++....+
T Consensus 182 ~Apl~e~lAa~ll~l~~~-~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 260 (393)
T 3k0b_A 182 SAPIKETMAAALVLLTSW-HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY 260 (393)
T ss_dssp SCSCCHHHHHHHHHHSCC-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCCCcHHHHHHHHHHhCC-CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence 345566677777766665 46789999999999999888775322
Q ss_pred ---ceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecCcccc-c---CCHHHHHHHHHHhcc
Q 019479 138 ---KNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAGSIEY-W---PDPQRGIKEAYRVLK 206 (340)
Q Consensus 138 ---~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~d~~~~l~~~~~~Lk 206 (340)
.+|+|+|+++.+++.|+++. .. .+++++++|+.+++.+ .+||+|+++--+.. + .+...+++++.+.||
T Consensus 261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 46999999999999999873 22 3599999999887754 47999999855432 2 223456677777777
Q ss_pred c--CcEEEEEccC
Q 019479 207 I--GGKACVIGPV 217 (340)
Q Consensus 207 p--gG~l~i~~~~ 217 (340)
+ ||.+++....
T Consensus 340 ~~~g~~~~iit~~ 352 (393)
T 3k0b_A 340 RMPTWSVYVLTSY 352 (393)
T ss_dssp TCTTCEEEEEECC
T ss_pred cCCCCEEEEEECC
Confidence 6 8998887653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=99.60 Aligned_cols=122 Identities=10% Similarity=-0.003 Sum_probs=91.5
Q ss_pred CCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC------------------------------------
Q 019479 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA------------------------------------ 137 (340)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~------------------------------------ 137 (340)
.+..+.+...++..... .++..|||.+||+|.+++.++....+
T Consensus 176 Apl~e~LAaall~l~~~-~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 254 (384)
T 3ldg_A 176 APIKENMAAAIILLSNW-FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD 254 (384)
T ss_dssp CCCCHHHHHHHHHHTTC-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred CCCcHHHHHHHHHHhCC-CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence 34556677777766665 46789999999999999988765322
Q ss_pred --ceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecCcccc-cC---CHHHHHHHHHHhccc
Q 019479 138 --KNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAGSIEY-WP---DPQRGIKEAYRVLKI 207 (340)
Q Consensus 138 --~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~---d~~~~l~~~~~~Lkp 207 (340)
.+++|+|+++.+++.|+++. .. .+++++++|+.+++.+ .+||+|+++--+.. +. +...+++++.+.||+
T Consensus 255 ~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 255 IQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 46999999999999999873 22 3589999999887754 47999999855432 22 234677777778776
Q ss_pred --CcEEEEEccC
Q 019479 208 --GGKACVIGPV 217 (340)
Q Consensus 208 --gG~l~i~~~~ 217 (340)
||.+++....
T Consensus 334 ~~g~~~~iit~~ 345 (384)
T 3ldg_A 334 LKTWSQFILTND 345 (384)
T ss_dssp CTTSEEEEEESC
T ss_pred CCCcEEEEEECC
Confidence 9999888653
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=100.41 Aligned_cols=121 Identities=12% Similarity=-0.011 Sum_probs=90.5
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-------------------------------------
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA------------------------------------- 137 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~------------------------------------- 137 (340)
+..+.+...++..... .++.+|||++||+|.+++.++....+
T Consensus 178 pl~e~lAa~ll~~~~~-~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPW-KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CCCHHHHHHHHHTSCC-CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred CCcHHHHHHHHHhhCC-CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 4455666666666655 46789999999999999998776321
Q ss_pred -ceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc-c---CCHHHHHHHHHHhccc-
Q 019479 138 -KNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY-W---PDPQRGIKEAYRVLKI- 207 (340)
Q Consensus 138 -~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~d~~~~l~~~~~~Lkp- 207 (340)
.+|+|+|+++.+++.|+++.. ..++++.++|+.+++.+ .+||+|+++--+.. + .+...+++++.+.||+
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~ 335 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL 335 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence 579999999999999998732 23689999999887654 57999999766542 2 2234667777777876
Q ss_pred -CcEEEEEccC
Q 019479 208 -GGKACVIGPV 217 (340)
Q Consensus 208 -gG~l~i~~~~ 217 (340)
|+.+++....
T Consensus 336 ~g~~~~iit~~ 346 (385)
T 3ldu_A 336 KNWSYYLITSY 346 (385)
T ss_dssp BSCEEEEEESC
T ss_pred CCCEEEEEECC
Confidence 8888887653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-10 Score=97.45 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=71.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~ 177 (340)
..+...+++.+.. .++ +|||||||+|.++..+++. +.+|+++|+++.+++.++++....+++++++|+.++++++.
T Consensus 33 ~~i~~~Iv~~~~~-~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 33 EAHLRRIVEAARP-FTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp HHHHHHHHHHHCC-CCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGS
T ss_pred HHHHHHHHHhcCC-CCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhc
Confidence 3455666666655 356 9999999999999999998 58999999999999999998776789999999988776542
Q ss_pred -CccEEEecCccc
Q 019479 178 -YADRYVSAGSIE 189 (340)
Q Consensus 178 -~fD~v~~~~~l~ 189 (340)
.+|.|+++.-.+
T Consensus 109 ~~~~~iv~NlPy~ 121 (271)
T 3fut_A 109 PQGSLLVANLPYH 121 (271)
T ss_dssp CTTEEEEEEECSS
T ss_pred cCccEEEecCccc
Confidence 588888775543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=103.74 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-------------CCceEEEEeCCHHHHHHHHHhC---CCC--CcEEEEcCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-------------DAKNVTILDQSPHQLAKAKQKE---PLK--ECTIIEGDAEDLP 173 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~~v~g~D~s~~~~~~a~~~~---~~~--~i~~~~~d~~~~~ 173 (340)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|+.+. ... ++.+.++|....+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 367899999999999999888753 3468999999999999998762 222 6788999987655
Q ss_pred CCCCCccEEEecCcccccCC-----------------HHHHHHHHHHhcccCcEEEEEcc
Q 019479 174 FPTDYADRYVSAGSIEYWPD-----------------PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d-----------------~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ++||+|+++-.+..... ...+++++.+.|||||++.++.+
T Consensus 250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 33 47999999866654321 13789999999999999988864
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-09 Score=97.94 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=91.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP- 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~- 173 (340)
+.+...+++.... .+.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++. ...|++|+++|+++..
T Consensus 200 ~~l~~~~~~~~~~--~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTKG--SKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTTT--CCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHhhc--CCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 3444455554443 3578999999999999998885 579999999999999999763 3358999999996531
Q ss_pred -CCC--------------CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHH
Q 019479 174 -FPT--------------DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE 238 (340)
Q Consensus 174 -~~~--------------~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (340)
+.. .+||+|++.---. .+..++.+.|+++|+++.+...... -..
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~ivyvsc~p~t---------------~ar 334 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPRILYISCNPET---------------LCK 334 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSEEEEEESCHHH---------------HHH
T ss_pred HHhhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCEEEEEECCHHH---------------HHH
Confidence 111 3799999743221 2345677778899998877643211 012
Q ss_pred HHHHHHHHCCCcEEEEEEeC
Q 019479 239 EYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~~~~ 258 (340)
++..+. + ||+..++..+.
T Consensus 335 d~~~l~-~-~y~~~~~~~~D 352 (369)
T 3bt7_A 335 NLETLS-Q-THKVERLALFD 352 (369)
T ss_dssp HHHHHH-H-HEEEEEEEEEC
T ss_pred HHHHHh-h-CcEEEEEEeec
Confidence 333333 2 68887777664
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=8.3e-09 Score=92.92 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCC---CCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPT---DYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~---~~fD~v~~ 184 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++ ....+++++++|+.+++... .+||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 478899999999999999999875 358999999999999999876 34468999999997765322 47999997
Q ss_pred c------CcccccC-----------CH-------HHHHHHHHHhcccCcEEEEEccC
Q 019479 185 A------GSIEYWP-----------DP-------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~------~~l~~~~-----------d~-------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. .++..-+ +. .++|+.+.+.++ ||+|+..+..
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 3 1221111 11 146777878787 8988776543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=93.72 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCC-
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPT- 176 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~- 176 (340)
.+...++..+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. .++++++++|+.++++++
T Consensus 16 ~i~~~iv~~~~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 16 FVLQKIVSAIHP-QKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSV 92 (255)
T ss_dssp HHHHHHHHHHCC-CTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGS
T ss_pred HHHHHHHHhcCC-CCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHh
Confidence 344555555554 36889999999999999999987 5899999999999999998854 468999999998877543
Q ss_pred ---CCccEEEecC
Q 019479 177 ---DYADRYVSAG 186 (340)
Q Consensus 177 ---~~fD~v~~~~ 186 (340)
++|| |+++-
T Consensus 93 ~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 93 KTDKPLR-VVGNL 104 (255)
T ss_dssp CCSSCEE-EEEEC
T ss_pred ccCCCeE-EEecC
Confidence 4688 66543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.2e-09 Score=91.13 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--------CCCCcEEEEcCCCCC-CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECTIIEGDAEDL-PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--------~~~~i~~~~~d~~~~-~~~~~~fD~v 182 (340)
+.+++||-||.|.|..+..+++..+..+|+.+|+++.+++.+++.+ ..++++++.+|.... ....++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3678999999999999999999866689999999999999999764 357899999999663 3456789999
Q ss_pred EecCcccccC----CHHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYWP----DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++...=..-+ -...+++.+++.|+|||.++...
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 9743211111 11378999999999999998874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=100.33 Aligned_cols=99 Identities=21% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC------------------CCCCcEEEEcCCCCCC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------------PLKECTIIEGDAEDLP- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~------------------~~~~i~~~~~d~~~~~- 173 (340)
++.+|||+|||+|..+..++.+.++.+|+++|+++.+++.++++. ...+++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 578999999999999999999877788999999999999999763 3234889999986532
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...++||+|++.- . .....++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 1135799999643 2 134678999999999999888774
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=97.22 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=102.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHh----------------CCCceEEEEeCCHHHHHHHHHhCCC----CCcEE---EEcC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKH----------------VDAKNVTILDQSPHQLAKAKQKEPL----KECTI---IEGD 168 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~---~~~d 168 (340)
+...+|+|+||++|..+..+... .|..+|+..|+.......+-+.+.. .+..| +.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35678999999999887765443 3568999999988777777665432 12234 4456
Q ss_pred CCCCCCCCCCccEEEecCcccccCCH---------------------------------HHHHHHHHHhcccCcEEEEEc
Q 019479 169 AEDLPFPTDYADRYVSAGSIEYWPDP---------------------------------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 169 ~~~~~~~~~~fD~v~~~~~l~~~~d~---------------------------------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+..-.++++++|+|+++.++||+.+. ..+|+..++.|+|||++++..
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 65567899999999999999998542 245888999999999999875
Q ss_pred cCCCch----------h--HhhHhhhH----------------hhcCCCHHHHHHHHHHCC-CcEEEEEEeCC
Q 019479 216 PVYPTF----------W--LSRFFADV----------------WMLFPKEEEYIEWFQKAG-FKDVKLKRIGP 259 (340)
Q Consensus 216 ~~~~~~----------~--~~~~~~~~----------------~~~~~~~~~~~~~l~~aG-F~~v~~~~~~~ 259 (340)
...... + +...+.++ ...+++.+++++.+++.| |++.+++.+..
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~ 282 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEee
Confidence 433221 1 11111111 112678999999999995 47777666543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-09 Score=97.61 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=67.2
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC--CC---
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP--FP--- 175 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~--~~--- 175 (340)
.+++.+.. .++.+|||+|||+|.++..+++.+|+.+|+|+|.|+.+++.|+++... .+++++++|+.+++ +.
T Consensus 17 e~l~~L~~-~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g 95 (301)
T 1m6y_A 17 EVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG 95 (301)
T ss_dssp HHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred HHHHhcCC-CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcC
Confidence 33333333 467899999999999999999998778999999999999999988543 58999999998764 11
Q ss_pred CCCccEEEecCc
Q 019479 176 TDYADRYVSAGS 187 (340)
Q Consensus 176 ~~~fD~v~~~~~ 187 (340)
..+||.|++...
T Consensus 96 ~~~~D~Vl~D~g 107 (301)
T 1m6y_A 96 IEKVDGILMDLG 107 (301)
T ss_dssp CSCEEEEEEECS
T ss_pred CCCCCEEEEcCc
Confidence 157999998543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=88.23 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=62.5
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~ 176 (340)
.+...+++.+.. .++.+|||||||+|.++..+++. +..+|+|+|+++.+++.++++ ...+++++++|+.++++++
T Consensus 18 ~i~~~iv~~~~~-~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 18 GVLKKIAEELNI-EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-GDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHhcCC-CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhCChhH
Confidence 455556665554 36789999999999999999987 458999999999999999988 6678999999999887654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=97.30 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC---CCCC--cEEEEcCCCCCC--CCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKE--CTIIEGDAEDLP--FPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~---~~~~--i~~~~~d~~~~~--~~~~~fD~v~~ 184 (340)
++.+|||++||+|.+++.++.+.++ .+|+++|+++.+++.+++++ ...+ ++++++|+.++- ...++||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5789999999999999999997545 68999999999999999873 3333 899999985531 12457999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.- . .....++..+.+.|+|||.|+++.
T Consensus 132 DP-~---g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F---GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C---cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 65 1 233568999999999999888875
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=88.93 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
..+++.+|||+|||+|.|+..+++..+...++|+|++..+........ ...++.....+++...+..++||+|++..+.
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE 150 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence 445788999999999999999888755567889998744311110000 0125666777765566777889999997655
Q ss_pred cccC----CHH---HHHHHHHHhcccC-cEEEEEccC
Q 019479 189 EYWP----DPQ---RGIKEAYRVLKIG-GKACVIGPV 217 (340)
Q Consensus 189 ~~~~----d~~---~~l~~~~~~Lkpg-G~l~i~~~~ 217 (340)
+ .. |.. .+|+.+.++|||| |.+++-.+.
T Consensus 151 n-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 151 S-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 5 22 221 3468889999999 999886443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=90.78 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=59.2
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~ 175 (340)
+...++..+.. .++.+|||||||+|.++..+++..+. .+|+|+|+++.+++.++++. ..+++++++|+.+++++
T Consensus 30 i~~~iv~~~~~-~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 30 VIDAIVAAIRP-ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHCC-CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GGGEEEEESCGGGCCGG
T ss_pred HHHHHHHhcCC-CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CCCcEEEECChhcCChh
Confidence 44455555544 46889999999999999999998422 34999999999999999874 56899999999887754
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-09 Score=90.92 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchHHHHHHHh-------CCC-----ceEEEEeCCH---HHHH-----------HHHHhC---------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH-------VDA-----KNVTILDQSP---HQLA-----------KAKQKE--------- 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~g~D~s~---~~~~-----------~a~~~~--------- 157 (340)
++.+|||||+|+|..+..+++. .|. .+++++|..| +.+. .+++..
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999998887664 453 5899999876 4433 344321
Q ss_pred ------CC--CCcEEEEcCCCC-CCCCC----CCccEEEecC-cccccCC--HHHHHHHHHHhcccCcEEEEEccCCCch
Q 019479 158 ------PL--KECTIIEGDAED-LPFPT----DYADRYVSAG-SIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTF 221 (340)
Q Consensus 158 ------~~--~~i~~~~~d~~~-~~~~~----~~fD~v~~~~-~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 221 (340)
.. .+++++.+|+.+ ++..+ ..||+|+... .-...++ ...+++.++++|+|||+|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa----- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS----- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-----
Confidence 11 346789999865 44222 2799999843 1111122 24799999999999999874221
Q ss_pred hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 222 WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...++..|.++||++.+....+
T Consensus 215 ---------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 ---------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp ---------------BHHHHHHHHHHTEEEEEECCST
T ss_pred ---------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 1346678899999977665443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-08 Score=96.42 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=87.5
Q ss_pred cCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-----------------------------------
Q 019479 91 INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV----------------------------------- 135 (340)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------- 135 (340)
....+..+.+...++..... .++..|||.+||+|.+++.++...
T Consensus 169 ~~~apl~e~LAa~ll~~~~~-~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~ 247 (703)
T 3v97_A 169 AGIAPIKETLAAAIVMRSGW-QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR 247 (703)
T ss_dssp SCCCSSCHHHHHHHHHHTTC-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHhhCC-CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence 33445566777777776665 467899999999999998877642
Q ss_pred -------CCceEEEEeCCHHHHHHHHHhC---CC-CCcEEEEcCCCCCC--CCCCCccEEEecCcccc-cC---CHHHHH
Q 019479 136 -------DAKNVTILDQSPHQLAKAKQKE---PL-KECTIIEGDAEDLP--FPTDYADRYVSAGSIEY-WP---DPQRGI 198 (340)
Q Consensus 136 -------~~~~v~g~D~s~~~~~~a~~~~---~~-~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~-~~---d~~~~l 198 (340)
+..+++|+|+++.+++.|++++ .. ..+++.++|+.++. ...++||+|+++--+.. +. +...++
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence 1257999999999999999873 22 34899999998763 33347999999854432 21 223444
Q ss_pred HHH---HHhcccCcEEEEEcc
Q 019479 199 KEA---YRVLKIGGKACVIGP 216 (340)
Q Consensus 199 ~~~---~~~LkpgG~l~i~~~ 216 (340)
+.+ .+.+.|||.+++...
T Consensus 328 ~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHhhCCCCeEEEEeC
Confidence 444 444558999988754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-09 Score=92.60 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCH-------HHHHHHHHhCC----CCCcEEEEcCCCCC-C-CCC--C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP-------HQLAKAKQKEP----LKECTIIEGDAEDL-P-FPT--D 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~-------~~~~~a~~~~~----~~~i~~~~~d~~~~-~-~~~--~ 177 (340)
++.+|||+|||+|..+..+++. +.+|+++|+++ .+++.|+++.. ..+++++++|+.++ + +++ +
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 5689999999999999999997 67999999999 99999986532 13599999999763 2 333 6
Q ss_pred CccEEEecCccccc
Q 019479 178 YADRYVSAGSIEYW 191 (340)
Q Consensus 178 ~fD~v~~~~~l~~~ 191 (340)
+||+|++.-.+.+.
T Consensus 161 ~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 161 KPDIVYLDPMYPER 174 (258)
T ss_dssp CCSEEEECCCC---
T ss_pred CccEEEECCCCCCc
Confidence 89999998777653
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=96.77 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC------------------CceEEEEeCCHHHHHHHHHhC---CCCC-----cEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD------------------AKNVTILDQSPHQLAKAKQKE---PLKE-----CTII 165 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~g~D~s~~~~~~a~~~~---~~~~-----i~~~ 165 (340)
.++.+|+|.+||+|.++..+++... ...++|+|+++.+++.|+.+. ...+ +.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 3678999999999999988876531 247999999999999998762 2233 6789
Q ss_pred EcCCCCCC-CCCCCccEEEecCcccccCC--------------HHHHHHHHHHhcccCcEEEEEcc
Q 019479 166 EGDAEDLP-FPTDYADRYVSAGSIEYWPD--------------PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 166 ~~d~~~~~-~~~~~fD~v~~~~~l~~~~d--------------~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++|....+ ...++||+|+++-.+..... ...++.++.+.|||||++.++.+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 99986532 34567999999765543321 13789999999999999988854
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=85.94 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=61.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCce--EEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN--VTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~--v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~ 176 (340)
+...+++.+.. .++.+|||||||+|.++. +. . +.+ |+++|+++.+++.++++... ++++++++|+.++++++
T Consensus 9 i~~~iv~~~~~-~~~~~VLEIG~G~G~lt~-l~-~--~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 9 VIDSIVSAINP-QKGQAMVEIGPGLAALTE-PV-G--ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHCC-CTTCCEEEECCTTTTTHH-HH-H--TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH
T ss_pred HHHHHHHhcCC-CCcCEEEEECCCCcHHHH-hh-h--CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHH
Confidence 34444444443 467899999999999999 64 4 345 99999999999999987542 58999999998876532
Q ss_pred -----CCccEEEecCcc
Q 019479 177 -----DYADRYVSAGSI 188 (340)
Q Consensus 177 -----~~fD~v~~~~~l 188 (340)
+..|.|+++-..
T Consensus 84 ~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHTSCEEEEEECCT
T ss_pred hhcccCCceEEEECCCC
Confidence 124567765444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-08 Score=93.59 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=59.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCC-CC-CCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDL-PF-PTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~-~~-~~~~fD~v~~~ 185 (340)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++. ...+++++++|+.+. +. .+++||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4799999999999999999887 689999999999999999873 335799999999763 21 23579999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-07 Score=74.65 Aligned_cols=95 Identities=15% Similarity=0.013 Sum_probs=71.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C---CCCcEEEEcCCCCC--------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P---LKECTIIEGDAEDL-------------- 172 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~---~~~i~~~~~d~~~~-------------- 172 (340)
+.++|||+||| ..+..+++. ++.+|+.+|.+++..+.|++++ . ..+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 56899999984 677777774 4789999999999999998762 2 45799999997432
Q ss_pred -C--------C-CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 173 -P--------F-PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 173 -~--------~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+ . ..++||+|+...- .....+..+.+.|+|||+|++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1 2367999998652 22366777889999999995544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-08 Score=84.82 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+.++.+|||+|||+|.|+..+++..+...|+|+|++..+...+... ....++.....+.+...++..++|+|+|..+.
T Consensus 87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGE 166 (282)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCcc
Confidence 44578899999999999999988776667899999976532222110 00123444444433334466789999997666
Q ss_pred cccCCH-----H--HHHHHHHHhcccC--cEEEEEccC
Q 019479 189 EYWPDP-----Q--RGIKEAYRVLKIG--GKACVIGPV 217 (340)
Q Consensus 189 ~~~~d~-----~--~~l~~~~~~Lkpg--G~l~i~~~~ 217 (340)
. .... . .+|+-+.++|+|| |.+++-.+.
T Consensus 167 n-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 167 S-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred C-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 5 3222 1 3577778999999 999887544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-08 Score=86.40 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=65.0
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------CCC-----CCcEEEEcCCCC-CCCCCCCccE
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EPL-----KECTIIEGDAED-LPFPTDYADR 181 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-------~~~-----~~i~~~~~d~~~-~~~~~~~fD~ 181 (340)
.+|||+|||+|..+..++.. +.+|+++|.++.+.+.+++. ... .+++++++|..+ ++...++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 89999999999999999998 67899999999765444432 211 468999999865 3322236999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGG 209 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG 209 (340)
|++.-.+.+- .....+++..+.|++.+
T Consensus 168 V~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 9998877653 33356667777777654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-07 Score=91.30 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=71.2
Q ss_pred CCCEEEEEcCccchHHHHHHHh---C----------CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH---V----------DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP- 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~---~----------~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~- 175 (340)
++..|||||||+|.++...++. . ...+|+++|.++.++...+.+ .-.++|+++.+|++++.++
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 3568999999999996433222 1 124999999999776555433 1225699999999987653
Q ss_pred ----CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEE
Q 019479 176 ----TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 176 ----~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~ 212 (340)
.+++|+|++-..-....+. .+.|..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5789999986654333222 368888889999999864
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-07 Score=81.45 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-----------CCCcEEEEcCCCCC----CCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----------LKECTIIEGDAEDL----PFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----------~~~i~~~~~d~~~~----~~~~ 176 (340)
.++++||-||.|.|..+..+++. +..+|+.+|+++.+++.+++.+. .++++++.+|.... .-..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 45789999999999999999886 56899999999999999998642 13578888988542 1134
Q ss_pred CCccEEEecCcccc-cCCH---------HHHHHHHHHhcccCcEEEEEc
Q 019479 177 DYADRYVSAGSIEY-WPDP---------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~~~~~l~~-~~d~---------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++||+|+....-.. -.++ ..+++.++++|+|||+++...
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 67999997532111 1111 367899999999999998764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=79.12 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+|.+|||+||.+|.|+..++++ +.+|++||..+-.. ... ..++++++++|........++||+|+|..+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~-~l~---~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-- 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQ-SLM---DTGQVTWLREDGFKFRPTRSNISWMVCDMVE-- 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCH-HHH---TTTCEEEECSCTTTCCCCSSCEEEEEECCSS--
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcCh-hhc---cCCCeEEEeCccccccCCCCCcCEEEEcCCC--
Confidence 358999999999999999999998 78999999865322 222 3478999999998876667789999985433
Q ss_pred cCCHHHHHHHHHHhcccC---cEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 191 WPDPQRGIKEAYRVLKIG---GKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 191 ~~d~~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
++...+..+.+.|..| +.++......... ... .. .....+.+.|+..||..
T Consensus 281 --~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~-~~~-l~------~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNGWCRETIFNLKLPMKKR-YEE-VS------HNLAYIQAQLDEHGINA 334 (375)
T ss_dssp --CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSH-HHH-HH------HHHHHHHHHHHHTTCCE
T ss_pred --ChHHhHHHHHHHHhccccceEEEEEEecccch-HHH-HH------HHHHHHHHHHHhcCcch
Confidence 5556666666666554 4443332221110 000 00 02456778899999974
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=85.02 Aligned_cols=140 Identities=13% Similarity=0.033 Sum_probs=96.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhC---CC--CCcEEEEcCCCCC--C-CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKE---PL--KECTIIEGDAEDL--P-FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~---~~--~~i~~~~~d~~~~--~-~~~~~fD 180 (340)
.++.+|+|.+||+|.++..+++.. +...++|+|+++.+...|+.+. .. .++.+.++|.... | ....+||
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 467899999999999999888874 2578999999999999998762 22 3578899998654 3 3467899
Q ss_pred EEEecCcccc-------------------cC---C-HHHHHHHHHHhcc-cCcEEEEEccCCCchhHhhHhhhHhhcCCC
Q 019479 181 RYVSAGSIEY-------------------WP---D-PQRGIKEAYRVLK-IGGKACVIGPVYPTFWLSRFFADVWMLFPK 236 (340)
Q Consensus 181 ~v~~~~~l~~-------------------~~---d-~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (340)
+|+++--+.. ++ + .-.++..+.+.|| |||++.++.+.. ++.. -..
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g---~Lf~--------~~~ 368 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG---VLFR--------GNA 368 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH---HHHC--------CTH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch---HhhC--------Cch
Confidence 9998733211 00 0 1248999999999 999998886532 1100 001
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCCcccc
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~~~~~ 263 (340)
...+++.|-+.+. +..+..+....+.
T Consensus 369 ~~~iRk~Lle~~~-l~~II~LP~~lF~ 394 (542)
T 3lkd_A 369 EGTIRKALLEEGA-IDTVIGLPANIFF 394 (542)
T ss_dssp HHHHHHHHHHTTC-EEEEEECCSSCSS
T ss_pred hHHHHHHHHhCCc-eeEEEEccccccC
Confidence 3567777776654 4445555544443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=84.38 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCCEEEEEcCccchHHHHH---HHhCC-CceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGI---VKHVD-AKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l---~~~~~-~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
....|||||||+|.++... +++.. ..+|+++|-|+.+ ..+++. .-.++|+++++|++++.++ +++|+||+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS 434 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence 4568999999999984444 33321 1378999999854 444433 2235699999999998765 57999998
Q ss_pred cCccccc--CCHHHHHHHHHHhcccCcEEE
Q 019479 185 AGSIEYW--PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 185 ~~~l~~~--~d~~~~l~~~~~~LkpgG~l~ 212 (340)
-.+-..+ +....++....|.|||||.++
T Consensus 435 EwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 5443322 222367788889999999874
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-07 Score=86.71 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=92.2
Q ss_pred CEEEEEcCccchHHHHHHHhCC---------------CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-C
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVD---------------AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-F 174 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~---------------~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-~ 174 (340)
.+|||.+||+|.++..+++... ...++|+|+++.++..|+.+.. ..++.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999888765431 4689999999999999997621 123444778875433 4
Q ss_pred CCCCccEEEecCcccc--c-----------------------C---CH-HHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 175 PTDYADRYVSAGSIEY--W-----------------------P---DP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~--~-----------------------~---d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
...+||+|+++--+.. + + +. -.++..+.+.|||||++.++.+.. .+..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g---~L~~ 402 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG---SMSS 402 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH---HHHC
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch---hhhc
Confidence 5678999999744432 1 1 01 168999999999999998886431 1100
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccc
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 263 (340)
. -.....+++.|-+.+. +..+..+....+.
T Consensus 403 ---~----~~~~~~iRk~Lle~~~-l~aII~LP~~lF~ 432 (544)
T 3khk_A 403 ---N----TNNEGEIRKTLVEQDL-VECMVALPGQLFT 432 (544)
T ss_dssp ---C----GGGHHHHHHHHHHTTC-EEEEEECCTTBCC
T ss_pred ---C----cchHHHHHHHHHhCCc-HhEEEECCCCCCC
Confidence 0 0124577777777665 4556666554443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.2e-07 Score=78.53 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=70.3
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.+..++.+|||+||++|.|+..+++..+...|+|+|+...+....... ....++.....+.....+..+++|+|++..+
T Consensus 77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A 156 (300)
T 3eld_A 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG 156 (300)
T ss_dssp TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc
Confidence 455689999999999999999999875556899999975421110000 0012333333333323345678999999655
Q ss_pred ccccCCH-------HHHHHHHHHhcccC-cEEEEEccC
Q 019479 188 IEYWPDP-------QRGIKEAYRVLKIG-GKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~-------~~~l~~~~~~Lkpg-G~l~i~~~~ 217 (340)
-. .... ..+|.-+.++|+|| |.+++-.+.
T Consensus 157 Pn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 157 ES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 54 3222 14577778999999 999887544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=86.57 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC---CceEEEEeCCHHHHHHH--HHhCCC-------CCcEEEEcCCCCC-CCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD---AKNVTILDQSPHQLAKA--KQKEPL-------KECTIIEGDAEDL-PFPTDY 178 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~g~D~s~~~~~~a--~~~~~~-------~~i~~~~~d~~~~-~~~~~~ 178 (340)
.++.+|||.|||+|.++..+++..+ ..+++|+|+++.+++.| +..... ....+...|+... .....+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3578999999999999999998864 35899999999999999 433221 1235555666542 234567
Q ss_pred ccEEEecCcccc-cC---------------------------C-HHHHHHHHHHhcccCcEEEEEccC
Q 019479 179 ADRYVSAGSIEY-WP---------------------------D-PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 179 fD~v~~~~~l~~-~~---------------------------d-~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
||+|+++--+.. .. + ...++..+.+.|+|||++.++.+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999999755521 11 1 124678899999999999988654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.7e-07 Score=77.86 Aligned_cols=82 Identities=26% Similarity=0.288 Sum_probs=65.7
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~ 176 (340)
...++.+.. +++..+||.+||.|..+..++++ +.+|+|+|.++.+++.|++ ...++++++++++.++. ...
T Consensus 12 ~e~le~L~~-~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 12 QEALDLLAV-RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHTC-CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhCC-CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHcCC
Confidence 344444433 46789999999999999999998 7899999999999999998 65578999999998753 223
Q ss_pred CCccEEEecCc
Q 019479 177 DYADRYVSAGS 187 (340)
Q Consensus 177 ~~fD~v~~~~~ 187 (340)
+++|.|++...
T Consensus 88 ~~vDgIL~DLG 98 (285)
T 1wg8_A 88 ERVDGILADLG 98 (285)
T ss_dssp SCEEEEEEECS
T ss_pred CCcCEEEeCCc
Confidence 57999997433
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=68.70 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCCEEEEEcCccc-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCC-CCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT-DYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~-~~fD~v~~~~~l~~ 190 (340)
++.+|||||||.| ..+..+++. .+.+|+++|+++.+++ +++.|+.+..... +.||+|++...
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~------------~v~dDiF~P~~~~Y~~~DLIYsirP--- 98 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG------------IVRDDITSPRMEIYRGAALIYSIRP--- 98 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT------------EECCCSSSCCHHHHTTEEEEEEESC---
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc------------eEEccCCCCcccccCCcCEEEEcCC---
Confidence 4679999999999 699999984 2889999999886654 8899998733211 47999987442
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-++.+..+.++++.. |.-++|....
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~ 123 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLT 123 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 234455555555543 5677776443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-06 Score=69.18 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=72.1
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH--HHhCCCCCcEEEEc-CCCCCCCCCCCccEEEecC
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA--KQKEPLKECTIIEG-DAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a--~~~~~~~~i~~~~~-d~~~~~~~~~~fD~v~~~~ 186 (340)
...++.+|||+||++|.|+..++...+..+|+|+|+...-.+.- .+...++.++|+.+ |+..++ ..++|.|+|.-
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDI 152 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDI 152 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEec
Confidence 34578899999999999999988887667899999965432110 01234577999999 986554 36699999854
Q ss_pred cccccCCHH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 187 SIEYWPDPQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.= .-+++. .+|+-+.+.|++ |-+++-...
T Consensus 153 ge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 153 GE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp CC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred CC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 43 334432 356666788998 676665433
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-06 Score=75.42 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------CCCCcEEEEcCCCCCC-CCCCCccE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------PLKECTIIEGDAEDLP-FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------~~~~i~~~~~d~~~~~-~~~~~fD~ 181 (340)
+++.+|||+++|.|.-+..+++..++..++++|+++.-++..+++. ...++.+...|...++ ...+.||.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 4789999999999999999998866678999999998888777542 1246788888886643 34568999
Q ss_pred EEecCc--------ccccCC------H----------HHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGS--------IEYWPD------P----------QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~--------l~~~~d------~----------~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++.-- +..-++ . .++|.++.+.|||||+|+-.+...
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 996311 111111 0 167889999999999988765443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.8e-06 Score=69.73 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCc---EEEEc-CCCCCCCCCCCccEEEe
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KEC---TIIEG-DAEDLPFPTDYADRYVS 184 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i---~~~~~-d~~~~~~~~~~fD~v~~ 184 (340)
+++++.+|||+||+.|.|+..+++..+-..|.|.++.... . ....... .++ .|+++ |+.++ ...++|+|+|
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLS 145 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYK--PSEISDTLLC 145 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGS--CCCCCSEEEE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCC--CCCCCCEEEe
Confidence 6678999999999999999999887322234444443221 0 0000111 344 44446 99764 3557999998
Q ss_pred cCcccccCCH----H---HHHHHHHHhcccCc-EEEEEccC
Q 019479 185 AGSIEYWPDP----Q---RGIKEAYRVLKIGG-KACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~----~---~~l~~~~~~LkpgG-~l~i~~~~ 217 (340)
.-.-. ..+. . .+|.-+.++|+||| .+++-.+.
T Consensus 146 DMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 146 DIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 54432 2222 1 24666778999999 88776544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-05 Score=67.55 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH--HHhCCCCCcEEEEc-CCCCCCCCCCCccEEEecCc
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA--KQKEPLKECTIIEG-DAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a--~~~~~~~~i~~~~~-d~~~~~~~~~~fD~v~~~~~ 187 (340)
+.++.+|||+||++|.|+..++...+...|+|+|+...-.+.- -+...+..+.++.+ |+..++. .++|.|+|.-.
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig 169 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG 169 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc
Confidence 3577899999999999999888886557899999965411100 01122344778877 8866653 66999998665
Q ss_pred ccccCCHH-------HHHHHHHHhcccC-cEEEEEccCC
Q 019479 188 IEYWPDPQ-------RGIKEAYRVLKIG-GKACVIGPVY 218 (340)
Q Consensus 188 l~~~~d~~-------~~l~~~~~~Lkpg-G~l~i~~~~~ 218 (340)
..-+++. .+|+-+.+.|++| |-+++-....
T Consensus 170 -eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 170 -ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred -cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 6555553 3566667889998 8777754433
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=70.17 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=85.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-----CCceEEEEeCCHH--------------------------HHHHHHHh---CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPH--------------------------QLAKAKQK---EP 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~--------------------------~~~~a~~~---~~ 158 (340)
.+..|||+|+..|..+..++... ++.+++++|..+. ..+.++++ ..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46799999999999998887754 3688999996421 24445544 22
Q ss_pred --CCCcEEEEcCCCC-CC-CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcC
Q 019479 159 --LKECTIIEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLF 234 (340)
Q Consensus 159 --~~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 234 (340)
.++++++.+|+.+ ++ ++.++||+|++-.-.+ ......|+.+.+.|+|||.+++-+... +..
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~~~---~~G---------- 250 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDYMM---CPP---------- 250 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSCTT---CHH----------
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCCCC---CHH----------
Confidence 3789999999954 44 3457899999865321 123468999999999999887766421 110
Q ss_pred CCHHHHHHHHHHCCCc
Q 019479 235 PKEEEYIEWFQKAGFK 250 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~ 250 (340)
..+.+.+.+++.|..
T Consensus 251 -~~~Av~Ef~~~~~i~ 265 (282)
T 2wk1_A 251 -CKDAVDEYRAKFDIA 265 (282)
T ss_dssp -HHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHhcCCc
Confidence 134566777887865
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-07 Score=101.63 Aligned_cols=142 Identities=23% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-CCCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~ 186 (340)
+..+|||||.|+|..+..+.+... ..+++..|+|+...+.+++++..-+++....|..+. ++...+||+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 567999999999987766665542 247899999988877777553211222222233331 33456799999999
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh---hHhh---hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS---RFFA---DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
++|..++....|+++++.|||||++++.+.... .+.. .++. ..+....+.++|.++|.++||..+...
T Consensus 1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~-~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A 1320 ALATLGDPAVAVGNMAATLKEGGFLLLHTLLAG-HPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp C--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEEEE
T ss_pred cccccccHHHHHHHHHHhcCCCcEEEEEecccc-ccccccccccccccccCCcccCHHHHHHHHHhCCCceeeec
Confidence 999888899999999999999999988764321 0000 0000 011123466778888999999987764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=70.60 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=66.3
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F 174 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~ 174 (340)
..+.++.+.. +++..++|..||.|..+..+++.+ |.++|+|+|.++.+++.++ ++...+++++++++.++. .
T Consensus 46 l~Evl~~L~i-~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~~ 123 (347)
T 3tka_A 46 LDEAVNGLNI-RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAER 123 (347)
T ss_dssp THHHHHHTCC-CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHhc
Confidence 3444444443 478899999999999999999986 5689999999999999995 555578999999997753 1
Q ss_pred C-CCCccEEEecCcc
Q 019479 175 P-TDYADRYVSAGSI 188 (340)
Q Consensus 175 ~-~~~fD~v~~~~~l 188 (340)
. .+++|.|+....+
T Consensus 124 g~~~~vDgILfDLGV 138 (347)
T 3tka_A 124 DLIGKIDGILLDLGV 138 (347)
T ss_dssp TCTTCEEEEEEECSC
T ss_pred CCCCcccEEEECCcc
Confidence 1 1369999976444
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00012 Score=70.50 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=78.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-------------CceEEEEeCCHHHHHHHHHhC---CCCCcE
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKE---PLKECT 163 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~g~D~s~~~~~~a~~~~---~~~~i~ 163 (340)
+...+...+.. ..+.+|+|-+||+|.+...+.+... ...++|+|+++.+...|+-+. ......
T Consensus 205 Vv~lmv~l~~p-~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMDP-QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHHhhcc-CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 33333443333 4678999999999999887765321 246999999999999998651 223345
Q ss_pred EEEcCCCCCCC----CCCCccEEEecCcccccC---------------CH-HHHHHHHHHhcc-------cCcEEEEEcc
Q 019479 164 IIEGDAEDLPF----PTDYADRYVSAGSIEYWP---------------DP-QRGIKEAYRVLK-------IGGKACVIGP 216 (340)
Q Consensus 164 ~~~~d~~~~~~----~~~~fD~v~~~~~l~~~~---------------d~-~~~l~~~~~~Lk-------pgG~l~i~~~ 216 (340)
+..+|....+. ...+||+|+++--+..-. +. ..++..+.+.|| |||++.++.+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 67787754432 234799999976553211 11 156788888887 7999988865
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=65.09 Aligned_cols=142 Identities=12% Similarity=0.136 Sum_probs=98.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------------------------CCCcEEEEcC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------------------LKECTIIEGD 168 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------------------------~~~i~~~~~d 168 (340)
+...|+.+|||.......+....++.+++-+|. |++++.-++.+. ..+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 467899999999999999888766789999999 888777665421 2568889999
Q ss_pred CCCCC--------C-CCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCC---chhHhh-H---hhh-
Q 019479 169 AEDLP--------F-PTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYP---TFWLSR-F---FAD- 229 (340)
Q Consensus 169 ~~~~~--------~-~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~~-~---~~~- 229 (340)
+.+.. . ......++++-.++.+++... ++++.+.+.. |+|.+++.+...+ .....+ + +..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~ 254 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKES 254 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhcc
Confidence 97631 1 224468899999999996553 6788888776 7888776665443 111111 1 111
Q ss_pred H---h---hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 230 V---W---MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 230 ~---~---~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. + ..+.+.++..+.|.++||+ ...++.
T Consensus 255 rg~~l~~~~~y~s~~~~~~rl~~~Gf~--~a~d~~ 287 (334)
T 1rjd_A 255 RNLEMPTLMTYNSKEKYASRWSAAPNV--IVNDMW 287 (334)
T ss_dssp HCCCCTTTTTTCSHHHHHGGGTTSSEE--EEEEHH
T ss_pred cCCcccccccCCCHHHHHHHHHHCCCC--cccCHH
Confidence 0 1 1246899999999999997 455554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=64.87 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=47.8
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
....+...++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.|++++
T Consensus 220 ~p~~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 220 FPLELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp SCHHHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 34456666666544 47889999999999999998887 789999999999999999773
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00034 Score=63.63 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=57.8
Q ss_pred HHHHHhccccCCCC-----CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC
Q 019479 99 DMRDEALEPADLFD-----RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172 (340)
Q Consensus 99 ~~~~~~l~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~ 172 (340)
.+.+.+++.+...+ ++..|||||.|.|.++..+++.....+|+++|+++..+...++....++++++.+|+.++
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 34455555444322 368999999999999999998744568999999999999998876557899999999654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=57.68 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=78.6
Q ss_pred CCCEEEEEcCccchHHHHHH----HhCCCc--eEEEEeCCH------------HHHHHHHHhC---CCCC--cEEEEcCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIV----KHVDAK--NVTILDQSP------------HQLAKAKQKE---PLKE--CTIIEGDA 169 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~----~~~~~~--~v~g~D~s~------------~~~~~a~~~~---~~~~--i~~~~~d~ 169 (340)
+.-+|||+|-|+|.+..... +..|.. +++.+|..+ +..+...+.. ...+ +++..+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 34689999999998765433 233454 456666421 1122222221 1233 45678888
Q ss_pred CC-CC-CCCCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHH
Q 019479 170 ED-LP-FPTDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEW 243 (340)
Q Consensus 170 ~~-~~-~~~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (340)
.+ ++ +.+..||+++... +..-.+| ..+++.++++++|||.+.-- .....++..
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY--------------------taag~VRR~ 234 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY--------------------SSSLSVRKS 234 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES--------------------CCCHHHHHH
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE--------------------eCcHHHHHH
Confidence 54 33 3445799999743 3333444 38999999999999998521 133567789
Q ss_pred HHHCCCcEEEEEEeC
Q 019479 244 FQKAGFKDVKLKRIG 258 (340)
Q Consensus 244 l~~aGF~~v~~~~~~ 258 (340)
|+++||++.++...+
T Consensus 235 L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 235 LLTLGFKVGSSREIG 249 (308)
T ss_dssp HHHTTCEEEEEECC-
T ss_pred HHHCCCEEEecCCCC
Confidence 999999988776654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=55.68 Aligned_cols=116 Identities=14% Similarity=0.036 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcC------ccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEE
Q 019479 111 FDRNMRVVDVGG------GTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~ 183 (340)
.+.+.+|||+|+ -.|.+ .+.+..|. +.|+++|+.+-.. ..+ .++++|..... ...+||+|+
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s--------da~-~~IqGD~~~~~-~~~k~DLVI 174 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS--------DAD-STLIGDCATVH-TANKWDLII 174 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC--------SSS-EEEESCGGGEE-ESSCEEEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc--------CCC-eEEEccccccc-cCCCCCEEE
Confidence 357999999996 56774 33344564 6999999966331 122 45899976543 347799999
Q ss_pred ecCcc---cc--cCC-----H-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 184 SAGSI---EY--WPD-----P-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 184 ~~~~l---~~--~~d-----~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+-..- .+ .+. . +.++.=+.++|+|||.+++-.+.... .+.+.++. + -|+.+
T Consensus 175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg----------------~~~L~~lr-k-~F~~V 236 (344)
T 3r24_A 175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW----------------NADLYKLM-G-HFSWW 236 (344)
T ss_dssp ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC----------------CHHHHHHH-T-TEEEE
T ss_pred ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC----------------HHHHHHHH-h-hCCeE
Confidence 84221 11 111 1 35677788899999999887543321 12333433 3 88888
Q ss_pred EEEE
Q 019479 253 KLKR 256 (340)
Q Consensus 253 ~~~~ 256 (340)
++..
T Consensus 237 K~fK 240 (344)
T 3r24_A 237 TAFV 240 (344)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7774
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0013 Score=57.60 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=91.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCC-CC---CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAED-LP---FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~-~~---~~~~~fD~v~~~~~l 188 (340)
+..+||+=+|+|.+++.+++. +.+++.+|.++..++..+++... .+++++..|... +. -+..+||+|++--..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999998884 68999999999999999988653 568999999643 21 234569999997776
Q ss_pred cccCCHHHHHHHHHH--hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 189 EYWPDPQRGIKEAYR--VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~--~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+.-.+...+++.+.+ .+.|+|.+++.-|...... .+.+.+-|++.|.....
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~--------------~~~~~~~l~~~~~~~l~ 222 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAW--------------TEQFLRKMREISSKSVR 222 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHH--------------HHHHHHHHHHHCSSEEE
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHH--------------HHHHHHHHHhcCCCeEE
Confidence 644456677766665 4568999999877655321 34555667777774333
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0046 Score=55.24 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCC--------CCCCCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLP--------FPTDYA 179 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~--------~~~~~f 179 (340)
...|+++|||-=..+..+.. .++.+++=+|. |.+++..++.+. ..+..++.+|+.+-. +....-
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDW-PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCC-CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccC-CCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 45799999997666544432 12478999996 999988887642 456788999997611 111223
Q ss_pred cEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch-h---Hh----hHhhhH----------hhcCCC-HH
Q 019479 180 DRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF-W---LS----RFFADV----------WMLFPK-EE 238 (340)
Q Consensus 180 D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~---~~----~~~~~~----------~~~~~~-~~ 238 (340)
=++++-.+++++++. ..+++.+...+.||+.|++........ . .. ..+... +....+ .+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 260 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA 260 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence 478888999999765 378889988889999988876443211 1 01 111111 111225 78
Q ss_pred HHHHHHHHCCCcEEEEEEe
Q 019479 239 EYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~~~ 257 (340)
+..++|.+.||+.+ ....
T Consensus 261 ~~~~~f~~~G~~~~-~~~~ 278 (310)
T 2uyo_A 261 VVADWLNRHGWRAT-AQSA 278 (310)
T ss_dssp CHHHHHTTTTEEEE-EEEH
T ss_pred HHHHHHHHCcCccc-cCCH
Confidence 89999999999988 4444
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0014 Score=57.08 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
..+...++.... .++..|||..||+|..+....+. +.+++|+|+++..++.+++++.
T Consensus 199 ~~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence 455555555443 47889999999999999998887 7899999999999999998754
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.034 Score=51.01 Aligned_cols=129 Identities=10% Similarity=0.040 Sum_probs=82.2
Q ss_pred CEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC--------CCCCccEEEec
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF--------PTDYADRYVSA 185 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~--------~~~~fD~v~~~ 185 (340)
.+|+|+-||.|.++..+.+. +. .+.++|+++.+++..+.+. ++..++++|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~--~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF--PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC--TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC--CCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 58999999999999999887 55 4669999999999988775 356788899977531 24579999986
Q ss_pred CcccccC--------CHH-HHHH---HHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 186 GSIEYWP--------DPQ-RGIK---EAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 186 ~~l~~~~--------d~~-~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.-...+. |.. .++. ++.+.++|. +++.+.+..-..... . ...+.+. .|++.||.++.
T Consensus 79 pPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~gl~s~~~--~------~~~~~i~-~l~~~GY~v~~ 147 (376)
T 3g7u_A 79 PPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPGIMQEKY--S------GIRNKAF-NLVSGDYDILD 147 (376)
T ss_dssp CCCCTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTTTTCGGG--H------HHHHHHH-HHHHTTEEECC
T ss_pred CCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchHhhccCc--H------HHHHHHH-HHHcCCCccCc
Confidence 5544332 322 2333 344455773 444443322110000 0 0235666 88999998733
Q ss_pred EEEeC
Q 019479 254 LKRIG 258 (340)
Q Consensus 254 ~~~~~ 258 (340)
...+.
T Consensus 148 ~~vl~ 152 (376)
T 3g7u_A 148 PIKVK 152 (376)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 34443
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.052 Score=48.82 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=96.8
Q ss_pred CCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhC--------------------------CCCCcEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKE--------------------------PLKECTII 165 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~--------------------------~~~~i~~~ 165 (340)
+...|+-+|||.-.....+... .++.+++=+|. |+.++.-++.+ ...+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4578999999988777777664 24678999999 77766543321 13567788
Q ss_pred EcCCCCCC----------CCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHh-hhH--
Q 019479 166 EGDAEDLP----------FPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-ADV-- 230 (340)
Q Consensus 166 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~~~-- 230 (340)
..|+.+.. +....-=++++-.++.+++.. ..+++.+.+.. |+|.+++.++..+.....+.. ...
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~~ 247 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLRR 247 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHHH
Confidence 99986521 222334578888899998654 36788887766 456666666554433222211 111
Q ss_pred -------hhcCCCHHHHHHHHHHCCCcEEEEEEeCCcc
Q 019479 231 -------WMLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261 (340)
Q Consensus 231 -------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 261 (340)
...+.+.++..+.|.++||+.++..++...|
T Consensus 248 ~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 248 RQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELY 285 (334)
T ss_dssp TTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHH
T ss_pred hCCCCcccccCCCHHHHHHHHHHcCCCcceeecHHHHH
Confidence 1124578999999999999998888775443
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.036 Score=49.83 Aligned_cols=132 Identities=12% Similarity=0.074 Sum_probs=86.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC---ceE-EEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA---KNV-TILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~---~~v-~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~ 185 (340)
...+++|+-||.|.++.-+.+. + ..+ .++|+++.+++..+.+.... ++.+|+.++. ++...+|+++..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a--G~~~~~v~~a~e~d~~a~~ty~~N~~~~---~~~~DI~~~~~~~i~~~~~Dil~gg 83 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS--SININATFIPFDINEIANKIYSKNFKEE---VQVKNLDSISIKQIESLNCNTWFMS 83 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS--SCCCCEEEEEECCCHHHHHHHHHHHCCC---CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred CCCEEEEECCChhHHHHHHHHc--CCCceEEEEEEECCHHHHHHHHHHCCCC---cccCChhhcCHHHhccCCCCEEEec
Confidence 4568999999999999998876 4 345 69999999999988775432 5678887764 222358999986
Q ss_pred Cccccc-----------CCHH-HHHHHHHH-hccc---CcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 186 GSIEYW-----------PDPQ-RGIKEAYR-VLKI---GGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 186 ~~l~~~-----------~d~~-~~l~~~~~-~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
.-...+ .|.. ..+.++.+ +++. .-.+++.+.+..-.. . .+.+.+.+.|++.||
T Consensus 84 pPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-~----------~~~~~i~~~l~~~GY 152 (327)
T 3qv2_A 84 PPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-S----------LVFKEIYNILIKNQY 152 (327)
T ss_dssp CCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-S----------HHHHHHHHHHHHTTC
T ss_pred CCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-h----------HHHHHHHHHHHhCCC
Confidence 554444 3443 45666666 5542 235555554432110 0 134678889999999
Q ss_pred cEEEEEEeCCcc
Q 019479 250 KDVKLKRIGPKW 261 (340)
Q Consensus 250 ~~v~~~~~~~~~ 261 (340)
.+.. ..+....
T Consensus 153 ~v~~-~vl~a~~ 163 (327)
T 3qv2_A 153 YIKD-IICSPID 163 (327)
T ss_dssp EEEE-EEECGGG
T ss_pred EEEE-EEEeHHH
Confidence 8643 3444433
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0014 Score=60.13 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~~ 185 (340)
+++.+||.+|+|. |..+..+++.....+|+++|.+++..+.+++.... .++..+-.++ ....+.+|+|+-.
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~~~~gg~D~vid~ 265 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT---HVINSKTQDPVAAIKEITDGGVNFALES 265 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC---EEecCCccCHHHHHHHhcCCCCcEEEEC
Confidence 5789999999986 88888888876333799999999999999865321 1222111110 0122369999854
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ....++.+.+.|++||++++...
T Consensus 266 ~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 266 TG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp SC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 32 23568889999999999988754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.019 Score=51.99 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=81.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~ 187 (340)
..+|+|+-||.|.++..+.+. + ..|.++|+++.+++..+.+.. +..++++|+.++.. +...+|+++...-
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~--G~~~~~v~~~E~d~~a~~~~~~N~~--~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP 77 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNFP--HTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCeEEEeCcCccHHHHHHHHC--CCCceEEEEEeCCHHHHHHHHHhcc--ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence 358999999999999999887 4 368999999999999998864 34578899877541 1125899998655
Q ss_pred cccc---------CCHH-HHHHHHHHh---cc--cCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 188 IEYW---------PDPQ-RGIKEAYRV---LK--IGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 188 l~~~---------~d~~-~~l~~~~~~---Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
...+ .|.. ..+.++.++ ++ |. +++.+.+..-. .. .+.+.+.+.|++.||.+.
T Consensus 78 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~-~~----------~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE-VS----------STRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG-GS----------HHHHHHHHHHHHTTEEEE
T ss_pred CcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcccc-CH----------HHHHHHHHHHHHCCCeeE
Confidence 3332 2222 234444444 44 43 33343332210 00 134677888999999864
Q ss_pred EEEEeCCccc
Q 019479 253 KLKRIGPKWY 262 (340)
Q Consensus 253 ~~~~~~~~~~ 262 (340)
. ..+....|
T Consensus 145 ~-~vl~a~~~ 153 (343)
T 1g55_A 145 E-FLLSPTSL 153 (343)
T ss_dssp E-EEECGGGG
T ss_pred E-EEEEHHHC
Confidence 3 34444433
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.011 Score=54.76 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-C-----C-CCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-P-----F-PTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~-----~-~~~~fD~v 182 (340)
.++.+||.+|+|. |..+..+++.. +. +|+++|.+++.++.+++.- ..++..+-.+. . . ....+|+|
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lG----a~~i~~~~~~~~~~~~~~~~~g~g~Dvv 258 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAG----FETIDLRNSAPLRDQIDQILGKPEVDCG 258 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTT----CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC----CcEEcCCCcchHHHHHHHHhCCCCCCEE
Confidence 5789999999986 88899999876 55 9999999999999987542 22222211111 0 1 12269999
Q ss_pred EecCccccc--------CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYW--------PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~--------~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-...-... .++...++.+.+.|++||++++...
T Consensus 259 id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 259 VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred EECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 865443210 0123578899999999999987654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.024 Score=52.31 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-----CC-CCCCccEEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-----PF-PTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-----~~-~~~~fD~v~ 183 (340)
+++.+||-+|+|. |..+..+++..+..+|+++|.+++.++.+++.-. +.+..+-.+ + .. ....+|+|+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC----cEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 5789999999975 8889999998633489999999999999976422 222211111 0 01 123699999
Q ss_pred ecCccc---------ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIE---------YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~---------~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-..... +.+++...++.+.+.|++||++++...
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 654422 233455678999999999999987653
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=51.67 Aligned_cols=97 Identities=23% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC--CC-----C-CCCCCccE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAE--DL-----P-FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~--~~-----~-~~~~~fD~ 181 (340)
+++.+||-+|+|. |..+..+++.. +.+ |+++|.+++..+.+++. ...-+.+...+.. ++ . .....+|+
T Consensus 178 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 178 RLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 5788999999975 88889999886 554 99999999999999987 4333333321111 10 0 12346999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+-... ....+..+.+.|++||++++...
T Consensus 256 vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 256 ALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred EEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 986432 23467889999999999988754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0053 Score=56.30 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC----C-CCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE----D-LPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~----~-~~~~~~~fD~v~~~ 185 (340)
+++.+||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.-...-+.+...|+. + .....+.+|+|+-.
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~ 260 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC 260 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence 5789999999975 8888899988633499999999999999887532110110011110 0 00233479999864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ....++.+.+.|++||++++...
T Consensus 261 ~G------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 261 AG------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp SC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CC------CHHHHHHHHHHhccCCEEEEEec
Confidence 32 23578899999999999988754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0031 Score=57.02 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~ 186 (340)
.++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++... . .++..+-.++. ...+.+|+|+-..
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGA-E--VAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCC-C--EEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 5789999999975 89999999986 6799999999999999987532 1 11211111110 0113689888643
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. ....++.+.+.|++||++++....
T Consensus 241 g------~~~~~~~~~~~l~~~G~iv~~G~~ 265 (340)
T 3s2e_A 241 V------SPKAFSQAIGMVRRGGTIALNGLP 265 (340)
T ss_dssp C------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred C------CHHHHHHHHHHhccCCEEEEeCCC
Confidence 2 235788999999999999887543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0053 Score=55.93 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcC---CCC----C-CCCCCCccE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGD---AED----L-PFPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d---~~~----~-~~~~~~fD~ 181 (340)
.++.+||-+|+|. |..+..+++.. +. +|+++|.+++..+.+++... . .++..+ ..+ + ......+|+
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~~i~~~~~~g~D~ 245 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGA-D--LVLQISKESPQEIARKVEGQLGCKPEV 245 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTC-S--EEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEEcCcccccchHHHHHHHHhCCCCCE
Confidence 5789999999985 88888998886 55 99999999999999886432 2 122211 000 0 011146999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+-... ....+..+.+.|++||++++...
T Consensus 246 vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 246 TIECTG------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEECCC------ChHHHHHHHHHhcCCCEEEEEec
Confidence 986432 23467888999999999988754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.02 Score=51.81 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++.-. .. ++ .+.+.+ . ..+|+|+-...-.
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~~--v~-~~~~~~--~-~~~D~vid~~g~~- 245 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGV-KH--FY-TDPKQC--K-EELDFIISTIPTH- 245 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTC-SE--EE-SSGGGC--C-SCEEEEEECCCSC-
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCC-Ce--ec-CCHHHH--h-cCCCEEEECCCcH-
Confidence 5789999999975 88888888886 6799999999999999987422 21 22 333322 2 2699998643322
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..+..+.+.|+++|++++....
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEECCCC
T ss_pred -----HHHHHHHHHHhcCCEEEEECCC
Confidence 2467888999999999987543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.013 Score=53.20 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCCCC------CC---CCCcc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AEDLP------FP---TDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~~~------~~---~~~fD 180 (340)
.++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++... + .++..+ ..+.. .. ...+|
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGA-D--VTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTC-S--EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCC-C--EEEcCcccccHHHHHHHHhccccCCCCC
Confidence 5789999999874 78888888875 6779999999999999886432 2 122111 01110 11 24699
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|+-... ....++.+.+.|+++|++++...
T Consensus 243 ~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 243 VTIDCSG------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 9986432 13467888999999999988754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0053 Score=50.73 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
.++++||.+|+ |.|..+..++... +.+|+++|.+++..+.+++... ... .|..+.. .....+|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~----~~~-~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV----EYV-GDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC----SEE-EETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC----CEE-eeCCcHHHHHHHHHHhCCCCCeE
Confidence 47899999994 5677777776664 6799999999988887764311 111 1222111 11235999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.+.. ...++.+.+.|+|||++++...
T Consensus 111 vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 111 VLNSLA-------GEAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred EEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence 986542 1467889999999999988753
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=95.89 E-value=0.26 Score=44.12 Aligned_cols=126 Identities=14% Similarity=0.001 Sum_probs=77.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC-CCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|+|+.||.|.++..+... +...+.++|+++.+++..+.+..... ++|+.++.. .-..+|+|+...-...+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~~----~~Di~~~~~~~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEKP----EGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCCC----BSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred CCCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCCC----cCCHHHcCHhhCCCCCEEEECCCCCCc
Confidence 3579999999999999998876 23457789999999999988754221 677766431 12358999986433332
Q ss_pred ---------CCHH-HH---HHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 192 ---------PDPQ-RG---IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 192 ---------~d~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.|.. .+ +-++.+.++|. +++.+.+..-..... -...+.+.+.|++.||.+..
T Consensus 85 S~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl~~~~~--------~~~~~~i~~~l~~~GY~v~~ 149 (327)
T 2c7p_A 85 SISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHDN--------GNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp CTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGGG--------GHHHHHHHHHHHHTTBCCEE
T ss_pred chhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHHHhccc--------cHHHHHHHHHHHhCCCEEEE
Confidence 2332 12 23344456774 444443322110000 01246788889999998643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.026 Score=56.11 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------CC-----ceEEEEeC---CHHHHHHHHHh--------------C------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------DA-----KNVTILDQ---SPHQLAKAKQK--------------E------ 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~~-----~~v~g~D~---s~~~~~~a~~~--------------~------ 157 (340)
+.-+|+|+|.|+|.....+.+.+ |. .+++.+|. +.+.+..+-+. .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999887776643 11 57899998 55555443211 0
Q ss_pred ------CCC--CcEEEEcCCCC-CC-CC---CCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 158 ------PLK--ECTIIEGDAED-LP-FP---TDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 158 ------~~~--~i~~~~~d~~~-~~-~~---~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
... .+++..+|+.+ ++ +. ...+|++++...-- -.++ ..++..+.++++|||.+....
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAP-AKNPDMWNEQLFNAMARMTRPGGTFSTFT----- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCC-CCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 011 35567788843 32 11 46799999854221 1122 478999999999999875321
Q ss_pred hhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 221 FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....+++.|.++||.+......
T Consensus 212 ---------------~~~~vr~~l~~aGf~~~~~~~~ 233 (689)
T 3pvc_A 212 ---------------AAGFVRRGLQQAGFNVTKVKGF 233 (689)
T ss_dssp ---------------CCHHHHHHHHHTTCEEEEEECS
T ss_pred ---------------CcHHHHHHHHhCCeEEEeccCC
Confidence 2346778899999998776644
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0052 Score=55.88 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~ 184 (340)
+++.+||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.-.. .++..+-.++ . .....+|+|+-
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT---DIINYKNGDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC---EEECGGGSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---eEEcCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 5789999999975 88888888886333899999999999999876331 1111111110 0 12336999986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...- ...++.+.+.|+|||++++...
T Consensus 242 ~~g~------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 242 AGGD------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence 4322 2467889999999999988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0058 Score=55.34 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-CCCCccEEE
Q 019479 111 FDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-PTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD~v~ 183 (340)
..++.+||-+|+|. |..+..+++...+.+|+++|.+++..+.+++.-.. .++..+- ++. . ....+|+|+
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~---~~i~~~~-~~~~~v~~~t~g~g~d~v~ 244 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD---AAVKSGA-GAADAIRELTGGQGATAVF 244 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS---EEEECST-THHHHHHHHHGGGCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---EEEcCCC-cHHHHHHHHhCCCCCeEEE
Confidence 35789999999975 88889999887678999999999999999875321 1221111 110 1 123699988
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-.-. ....++.+.+.|++||++++....
T Consensus 245 d~~G------~~~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 245 DFVG------AQSTIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp ESSC------CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred ECCC------CHHHHHHHHHHHhcCCEEEEECCC
Confidence 6332 234788999999999999887643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.026 Score=56.02 Aligned_cols=124 Identities=21% Similarity=0.231 Sum_probs=80.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------C---C--ceEEEEeC---CHHHHHHHHHh--------------CC-----
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------D---A--KNVTILDQ---SPHQLAKAKQK--------------EP----- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~---~--~~v~g~D~---s~~~~~~a~~~--------------~~----- 158 (340)
+.-+|||+|-|+|.+.....+.+ | . .+++++|. +++.+..+-+. ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 44699999999999877765542 1 1 46899998 77777644321 10
Q ss_pred -------C--CCcEEEEcCCCC-CC-CC---CCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 159 -------L--KECTIIEGDAED-LP-FP---TDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 159 -------~--~~i~~~~~d~~~-~~-~~---~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
. -.+++..+|+.+ ++ +. ...||+++... +..-.++ ..+++.++++++|||.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFT----- 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 0 113456677743 22 11 46799999744 2222233 378999999999999875322
Q ss_pred hhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 221 FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....+++.|.++||.+......
T Consensus 220 ---------------~~~~vr~~L~~aGf~v~~~~~~ 241 (676)
T 3ps9_A 220 ---------------SAGFVRRGLQDAGFTMQKRKGF 241 (676)
T ss_dssp ---------------CCHHHHHHHHHHTCEEEEEECS
T ss_pred ---------------CcHHHHHHHHhCCeEEEecccc
Confidence 2246678899999998776544
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.16 Score=45.64 Aligned_cols=130 Identities=13% Similarity=0.138 Sum_probs=83.0
Q ss_pred CEEEEEcCccchHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l 188 (340)
.+++|+-||.|.+...+.+. + ..|.++|+++.+++.-+.+.. +..++.+|+.++. ++...+|+++...-.
T Consensus 4 ~~~idLFaG~GG~~~G~~~a--G~~~~~v~a~e~d~~a~~ty~~N~~--~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPC 79 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES--GLDGEIVAAVDINTVANSVYKHNFP--ETNLLNRNIQQLTPQVIKKWNVDTILMSPPC 79 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHCT--TSCEECCCGGGCCHHHHHHTTCCEEEECCCC
T ss_pred CEEEEECcCccHHHHHHHHc--CCCceEEEEEeCCHHHHHHHHHhCC--CCceeccccccCCHHHhccCCCCEEEecCCC
Confidence 58999999999999998876 4 357799999999999888764 3456778887654 222358999975444
Q ss_pred ccc---------CCHH-HHHHHHHHhcccC--cEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYW---------PDPQ-RGIKEAYRVLKIG--GKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~---------~d~~-~~l~~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
..+ .|.. ..+.++.++++.- -.+++.+.+..-.. . .+.+.+.+.|++.||.+... .
T Consensus 80 Q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~-~----------~~~~~i~~~l~~~GY~v~~~-v 147 (333)
T 4h0n_A 80 QPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFEN-S----------TVRNLFIDKLKECNFIYQEF-L 147 (333)
T ss_dssp CCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGG-S----------HHHHHHHHHHHHTTEEEEEE-E
T ss_pred cchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhh-h----------hHHHHHHHHHHhCCCeEEEE-E
Confidence 332 2332 2344444444321 24555555443211 0 02467888999999987544 4
Q ss_pred eCCc
Q 019479 257 IGPK 260 (340)
Q Consensus 257 ~~~~ 260 (340)
+...
T Consensus 148 l~a~ 151 (333)
T 4h0n_A 148 LCPS 151 (333)
T ss_dssp ECTT
T ss_pred ecHH
Confidence 4433
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.04 Score=49.71 Aligned_cols=99 Identities=17% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-C-CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~v~~~~~ 187 (340)
+++.+||-+|+|. |..+..+++...+.+|+++|.+++-.+.+++.....-+.....|..+ . . .....+|.++....
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~ 241 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAV 241 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCS
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEecc
Confidence 5789999999986 45666677766688999999999998888875432212222222211 0 0 12234676665322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+....+.|+++|++++...
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 242 ------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp ------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred ------CcchhheeheeecCCceEEEEec
Confidence 23578889999999999988754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.014 Score=53.48 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l 188 (340)
+++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++.-. . .++..+-.+ . ... +.+|+|+-....
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~-~g~Dvvid~~g~ 267 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGA-D--EVVNSRNADEMAAHL-KSFDFILNTVAA 267 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEETTCHHHHHTTT-TCEEEEEECCSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-c--EEeccccHHHHHHhh-cCCCEEEECCCC
Confidence 5789999999985 88888888875 6789999999999999886432 1 112111000 0 111 469999864432
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ..++.+.+.|+++|++++...
T Consensus 268 ~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 P------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp C------CCHHHHHTTEEEEEEEEECCC
T ss_pred H------HHHHHHHHHhccCCEEEEecc
Confidence 1 236778899999999987654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.28 Score=37.81 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=58.9
Q ss_pred CCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
..+|+=+|||. |......+.. .+.+|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~--- 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE----RGVRAVLGNAANEEIMQLAHLECAKWLILT--- 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH----TTCEEEESCTTSHHHHHHTTGGGCSEEEEC---
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH----cCCCEEECCCCCHHHHHhcCcccCCEEEEE---
Confidence 45788999974 4433333333 27899999999999988875 45678889986522 122468988863
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
.++.. ..+-...+.+.|+.+++..
T Consensus 79 --~~~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 79 --IPNGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp --CSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred --CCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 33332 2234456667788876654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0053 Score=55.59 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCC-CCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDA-EDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~-~~~~~~~~~fD~v~~~~~l 188 (340)
++.+||-+|+|. |..+..+++.. |+.+|+++|.+++..+.+++.-...-+.... .|. .++. ....+|+|+-....
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~g~g~D~vid~~g~ 248 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLT-DGLGASIAIDLVGT 248 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHH-TTCCEEEEEESSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhh-cCCCccEEEECCCC
Confidence 688999999974 77888888874 3678999999999999988653211010000 111 1111 12369999864332
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...++.+.+.|++||++++...
T Consensus 249 ------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 249 ------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp ------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ------hHHHHHHHHHhhcCCEEEEeCC
Confidence 3467889999999999988753
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.013 Score=53.72 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CC-CCC-----CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DA-EDL-----PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~-~~~-----~~~~~~fD~v~ 183 (340)
.++.+||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.-. . .++.. +. .++ ....+.+|+|+
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-T--ECLNPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 5789999999874 7888888887633389999999999999986422 1 11111 10 111 01223699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
-...- ...++.+.+.|+++ |++++...
T Consensus 267 d~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 267 ECAGR------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ECCCC------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 54321 35678899999999 99987753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=54.53 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC--CCCC-----CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD--AEDL-----PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d--~~~~-----~~~~~~fD~v~ 183 (340)
+++.+||-+|+| .|..+..+++..+..+|+++|.+++.++.+++.-. . .++... -.++ ....+.+|+|+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-N--EFVNPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-C--EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-c--EEEccccCchhHHHHHHHhcCCCCCEEE
Confidence 578999999997 48888888888633489999999999999886422 1 111111 0110 01234799998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
-... ....++.+.+.|++| |++++...
T Consensus 269 d~~g------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIG------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 6432 235688999999997 99988764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.068 Score=48.64 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCEEEEEc-C-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCC--CCCCCCCccEEEecC
Q 019479 113 RNMRVVDVG-G-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAED--LPFPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiG-c-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~--~~~~~~~fD~v~~~~ 186 (340)
++.+||-+| + +.|..+..+++...+.+|+++|.+++..+.+++.-. . .++.. |+.+ .....+.+|+|+-..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa-d--~vi~~~~~~~~~v~~~~~~g~Dvvid~~ 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA-H--HVIDHSKPLAAEVAALGLGAPAFVFSTT 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC-S--EEECTTSCHHHHHHTTCSCCEEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC-C--EEEeCCCCHHHHHHHhcCCCceEEEECC
Confidence 678999998 4 468899999987557899999999999999986422 1 11111 1100 012335699988532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.....+..+.+.|+++|++++..
T Consensus 248 ------g~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 248 ------HTDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ------CHHHHHHHHHHHSCTTCEEEECS
T ss_pred ------CchhhHHHHHHHhcCCCEEEEEC
Confidence 23357889999999999998874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.019 Score=52.49 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCC-CCC-----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIE-GDA-EDL-----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~-~~~-----~~~~~~fD~v 182 (340)
.++.+||-+|+|. |..+..+++.. +. +|+++|.+++..+.+++... . .++. .+. .++ ....+.+|+|
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~v 266 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGA-T--DFVNPNDHSEPISQVLSKMTNGGVDFS 266 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-C--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCC-c--eEEeccccchhHHHHHHHHhCCCCCEE
Confidence 5789999999874 78888888886 55 89999999999999886422 1 1111 110 111 0112369999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
+-.... ...++.+.+.|++| |++++...
T Consensus 267 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 267 LECVGN------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp EECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred EECCCC------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 854321 34678899999999 99988754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.049 Score=49.55 Aligned_cols=95 Identities=23% Similarity=0.241 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~~ 184 (340)
+++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++... . .++..+..++. .....+|+|+-
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGA-D--HGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCC-C--EEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 5789999999875 88888888875 6799999999999999887532 1 12222211110 12336999986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...- ..+..+.+.|++||++++....
T Consensus 264 ~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 264 IAGG-------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp ETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred CCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence 5431 2467788999999999988643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.033 Score=51.55 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEE
Q 019479 111 FDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~ 183 (340)
..++.+||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.-.. .++..+-.++ . .....+|+|+
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~t~g~g~D~vi 287 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD---HVIDPTKENFVEAVLDYTNGLGAKLFL 287 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS---EEECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC---EEEcCCCCCHHHHHHHHhCCCCCCEEE
Confidence 35789999999974 78888888886334999999999999999875321 1221111111 0 1233699998
Q ss_pred ecCcccccCCHHHHHHHHHHhc----ccCcEEEEEccC
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVL----KIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~L----kpgG~l~i~~~~ 217 (340)
-.. ......+..+.+.| ++||++++....
T Consensus 288 d~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 288 EAT-----GVPQLVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp ECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred ECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 532 23333455555555 999999987643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.22 E-value=0.025 Score=51.70 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CC-CCC-----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEG-DA-EDL-----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~-~~~-----~~~~~~fD~v 182 (340)
+++.+||-+|+|. |..+..+++.. +. +|+++|.+++..+.+++.-. . .++.. +. .++ ....+.+|+|
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~~~~~~~g~D~v 265 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGA-T--ECVNPQDYKKPIQEVLTEMSNGGVDFS 265 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-c--eEecccccchhHHHHHHHHhCCCCcEE
Confidence 5789999999875 78888888886 55 89999999999999876422 1 11111 10 110 0122369999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
+-...- ...++.+.+.|+++ |++++...
T Consensus 266 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 266 FEVIGR------LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp EECSCC------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred EECCCC------HHHHHHHHHHhhcCCcEEEEecc
Confidence 854321 34678899999999 99988753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=51.83 Aligned_cols=92 Identities=17% Similarity=0.050 Sum_probs=63.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CC-------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LP-------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~-------~~~~~fD~ 181 (340)
.++++||..|+ |.|..+..+++.. +.+|+++|.+++..+.+++. ... .. .|..+ .. ...+.+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~-g~~--~~--~d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI-GFD--AA--FNYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCS--EE--EETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCc--EE--EecCCHHHHHHHHHHHhCCCCeE
Confidence 57899999998 5677777777764 67999999999988888543 211 11 13221 11 11246999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.+... ..++.+.+.|++||++++...
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 218 YFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 9875442 357888999999999987653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.024 Score=52.63 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCccchHHHHHH-HhCCC-ceEEEEeCCHHHHHHHHHhCC------C-CCcEEEEcCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIV-KHVDA-KNVTILDQSPHQLAKAKQKEP------L-KECTIIEGDA 169 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~-~~~~~-~~v~g~D~s~~~~~~a~~~~~------~-~~i~~~~~d~ 169 (340)
+++..|+|||++.|.++..++ +..+. .+|+++|++|...+..+++.. . ++++++..-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 578999999999999999988 55544 799999999999988887632 2 5666655444
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.024 Score=51.82 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCC-CCC-----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIE-GDA-EDL-----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~-~~~-----~~~~~~fD~v 182 (340)
+++.+||-+|+|. |..+..+++.. +. +|+++|.+++..+.+++.-. . .++. .+. .++ ....+.+|+|
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~D~v 264 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGA-T--ECINPQDFSKPIQEVLIEMTDGGVDYS 264 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTC-S--EEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-c--eEeccccccccHHHHHHHHhCCCCCEE
Confidence 5789999999874 78888888876 55 89999999999999986532 1 1111 110 110 0112369999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
+-.... ...++.+.+.|+++ |++++...
T Consensus 265 id~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 265 FECIGN------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp EECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred EECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence 854321 34678899999999 99988753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.023 Score=52.02 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCC-CCC-----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIE-GDA-EDL-----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~-~~~-----~~~~~~fD~v 182 (340)
.++.+||-+|+|. |..+..+++.. +. +|+++|.+++..+.+++.-. . .++. .+. .++ ....+.+|+|
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa-~--~vi~~~~~~~~~~~~v~~~~~~g~Dvv 269 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGA-T--DCLNPRELDKPVQDVITELTAGGVDYS 269 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC-S--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCC-c--EEEccccccchHHHHHHHHhCCCccEE
Confidence 5789999999874 78888888886 55 89999999999999876422 1 1111 110 010 0112369999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
+-...- ...++.+.+.|++| |++++...
T Consensus 270 id~~G~------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 270 LDCAGT------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp EESSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred EECCCC------HHHHHHHHHHhhcCCCEEEEECC
Confidence 854321 35678899999999 99988754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.099 Score=47.03 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=64.9
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC---CC-----CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED---LP-----FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~---~~-----~~~~~fD~ 181 (340)
.++++||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++..... ..+ |..+ +. ...+.+|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 228 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFD--DAF--NYKEESDLTAALKRCFPNGIDI 228 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCS--EEE--ETTSCSCSHHHHHHHCTTCEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCc--eEE--ecCCHHHHHHHHHHHhCCCCcE
Confidence 57899999997 5788888888875 679999999999988887443321 111 2211 10 11246999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
|+.+... ..++.+.+.|++||++++..
T Consensus 229 vi~~~g~-------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 229 YFENVGG-------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred EEECCCH-------HHHHHHHHHHhcCCEEEEEc
Confidence 9865431 36888999999999998764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.038 Score=49.21 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++.+||-+|+| .|..+..+++.. +.+|+++| +++..+.+++.-. ..+..|.+++ .+.+|+|+-.-.-
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa----~~v~~d~~~v---~~g~Dvv~d~~g~-- 209 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGV----RHLYREPSQV---TQKYFAIFDAVNS-- 209 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTE----EEEESSGGGC---CSCEEEEECC-----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCC----CEEEcCHHHh---CCCccEEEECCCc--
Confidence 579999999996 488888898886 67999999 9999999886422 2222242222 5679999853221
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+..+.+.|+++|++++..
T Consensus 210 -----~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 -----QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ---------TTGGGEEEEEEEEEEC
T ss_pred -----hhHHHHHHHhcCCCEEEEEe
Confidence 12356789999999998874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.088 Score=47.19 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=65.2
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~ 184 (340)
+++++||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+.+..... ..+..+-.++ ....+.+|+|+-
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFD--GAIDYKNEDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCS--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCC--EEEECCCHHHHHHHHHhcCCCceEEEE
Confidence 57899999998 5688888888875 679999999999998884333221 1111111110 011346999986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..- ..+..+.+.|++||++++...
T Consensus 225 ~~g~-------~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 225 NVGG-------EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp SSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred CCCc-------chHHHHHHHHhhCCEEEEEee
Confidence 4431 368889999999999988653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.078 Score=45.75 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccchHHHHHHHh-------CCCceEEEEe-----CCH----------------------HHHHHHH---H
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH-------VDAKNVTILD-----QSP----------------------HQLAKAK---Q 155 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D-----~s~----------------------~~~~~a~---~ 155 (340)
-+..|+|+|+-.|..+..++.. .+..+++++| ..+ +.++... +
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3568999999999988886542 2457999999 221 1112111 1
Q ss_pred ---hCC--CCCcEEEEcCCCC-CC-----CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 156 ---KEP--LKECTIIEGDAED-LP-----FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 156 ---~~~--~~~i~~~~~d~~~-~~-----~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+.. .++++++.+++.+ ++ .+..++|+|+.-.-. -......++.+...|+|||.+++-+...
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 122 3689999999965 33 245579999986532 1223467899999999999998877643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=45.53 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC------CCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP------TDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~------~~~fD~v~~ 184 (340)
.++.+||-+|+| .|..+..+++.. +.+|+++|.+++..+.+++... . .+ .|..+..+. .+.+|+|+-
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~~--~d~~~~~~~~~~~~~~~~~d~vid 236 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGA-D--LV--VNPLKEDAAKFMKEKVGGVHAAVV 236 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTC-S--EE--ECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCC-C--EE--ecCCCccHHHHHHHHhCCCCEEEE
Confidence 578999999986 578888888875 6799999999999998876321 1 11 233211100 046899986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.... ...++.+.+.|+++|++++....
T Consensus 237 ~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 237 TAVS------KPAFQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp SSCC------HHHHHHHHHHEEEEEEEEECCCC
T ss_pred CCCC------HHHHHHHHHHhhcCCEEEEeccc
Confidence 4331 24678889999999999887543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.049 Score=48.62 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=63.4
Q ss_pred EEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCCCCCCccEEEecCcccccC
Q 019479 116 RVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 116 ~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~ 192 (340)
+||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++.-.. . .+-..+... .....+.+|+|+-...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~-~-vi~~~~~~~~~~~~~~~~d~v~d~~g----- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGAN-R-ILSRDEFAESRPLEKQLWAGAIDTVG----- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTCS-E-EEEGGGSSCCCSSCCCCEEEEEESSC-----
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCC-E-EEecCCHHHHHhhcCCCccEEEECCC-----
Confidence 4999996 5788999999986 67999999999999999875321 1 111112111 1123456998875322
Q ss_pred CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+..+.+.|+++|++++...
T Consensus 221 --~~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 221 --DKVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --HHHHHHHHHTEEEEEEEEECCC
T ss_pred --cHHHHHHHHHHhcCCEEEEEec
Confidence 1378999999999999988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=47.01 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred CEEEEEcCc-cchHH-HHHH-HhCCCce-EEEEeCCHH---HHHHHHHhCCCCCcEEEEcCCCCCCCC-----CCCccEE
Q 019479 115 MRVVDVGGG-TGFTT-LGIV-KHVDAKN-VTILDQSPH---QLAKAKQKEPLKECTIIEGDAEDLPFP-----TDYADRY 182 (340)
Q Consensus 115 ~~vLDiGcG-~G~~~-~~l~-~~~~~~~-v~g~D~s~~---~~~~a~~~~~~~~i~~~~~d~~~~~~~-----~~~fD~v 182 (340)
.+||-+|+| .|..+ ..++ +.. +.+ |+++|.+++ ..+.+++.- .+.+ |..+..+. .+.+|+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG----a~~v--~~~~~~~~~i~~~~gg~Dvv 246 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD----ATYV--DSRQTPVEDVPDVYEQMDFI 246 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT----CEEE--ETTTSCGGGHHHHSCCEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC----Cccc--CCCccCHHHHHHhCCCCCEE
Confidence 899999985 47788 8888 765 555 999999988 888887532 2222 33221110 2368998
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-... ....++.+.+.|+++|++++...
T Consensus 247 id~~g------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 247 YEATG------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EECSC------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 85432 13467889999999999988754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.043 Score=49.47 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~~ 184 (340)
.++.+||-.|+|. |..+..+++......++++|.+++-.+.+++.-.. .++..+-.+.. .....+|+|+-
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~~~g~d~v~d 235 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM---QTFNSSEMSAPQMQSVLRELRFNQLILE 235 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe---EEEeCCCCCHHHHHHhhcccCCcccccc
Confidence 5789999999974 66778888886556789999999999999875321 12211111100 12245788775
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
... ....++.+.+.|++||++++.....
T Consensus 236 ~~G------~~~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 236 TAG------VPQTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp CSC------SHHHHHHHHHHCCTTCEEEECCCCS
T ss_pred ccc------ccchhhhhhheecCCeEEEEEeccC
Confidence 322 2356788999999999998876443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.018 Score=51.97 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-+|+| .|..+..+++.. +.+|+++|.+++..+.+++.... ..+..+-.++. .....+|+|+
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~---~~~~~~~~~~~~~~~~~~~~~g~Dvvi 218 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAA---YVIDTSTAPLYETVMELTNGIGADAAI 218 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCc---EEEeCCcccHHHHHHHHhCCCCCcEEE
Confidence 578999999986 678888888875 67999999999999988875321 11211111110 1234699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+..-. ...+..+.|++||++++...
T Consensus 219 d~~g~~-------~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 219 DSIGGP-------DGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp ESSCHH-------HHHHHHHTEEEEEEEEECCC
T ss_pred ECCCCh-------hHHHHHHHhcCCCEEEEEee
Confidence 643321 23445589999999988754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.14 Score=46.13 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCC-CCccEEE
Q 019479 112 DRNMRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPT-DYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~-~~fD~v~ 183 (340)
.++.+||-+|+| .|..+..+++...+.+|+++|.+++..+.+++... . .++...-.+. .... +.+|+|+
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-D--YVINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-C--EEecCCCccHHHHHHHHhcCCCceEEE
Confidence 578999999998 56677777777436799999999999888876421 1 1111111110 0112 4699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+..- ...++.+.+.|+++|++++...
T Consensus 246 ~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 246 DLNNS------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp ESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence 65332 3467888999999999988653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.14 Score=45.88 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEE
Q 019479 111 FDRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRY 182 (340)
Q Consensus 111 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v 182 (340)
.+++.+||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . .++..+-.++. .....+|+|
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~~~~~~~~~~~~~~~~~~~g~D~v 221 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGA-E--YLINASKEDILRQVLKFTNGKGVDAS 221 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-c--EEEeCCCchHHHHHHHHhCCCCceEE
Confidence 357899999994 5688888888875 6799999999999998876421 1 12221111110 123469999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-+..- ..++.+.+.|++||++++...
T Consensus 222 id~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 222 FDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp EECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 865432 357888899999999988753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.12 Score=46.49 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=64.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . .++..+ .++. .....+|+|+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~v~~~~-~~~~~~v~~~~~~~g~Dvvi 232 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGA-D--IVLPLE-EGWAKAVREATGGAGVDMVV 232 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTC-S--EEEESS-TTHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-c--EEecCc-hhHHHHHHHHhCCCCceEEE
Confidence 57899999997 5688888888885 6799999999999998887532 1 122222 2110 1233699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-+..- ..+..+.+.|++||++++..
T Consensus 233 d~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 233 DPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred ECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 65442 25778889999999998864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.02 Score=52.06 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC-CC--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE-DL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~-~~--~~~~~~fD~v~~~~~ 187 (340)
+++.+||-+|+| .|..+..+++.. +.+|+++|.+++..+.+++... . .++..+-. ++ ... +.+|+|+-...
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~-~~~D~vid~~g 252 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGA-D--HYIATLEEGDWGEKYF-DTFDLIVVCAS 252 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTC-S--EEEEGGGTSCHHHHSC-SCEEEEEECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHcCC-C--EEEcCcCchHHHHHhh-cCCCEEEECCC
Confidence 578999999986 478888888875 6789999999998898886432 1 12211101 10 011 46999986543
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
... ...++.+.+.|++||++++...
T Consensus 253 ~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 253 SLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 300 1234567889999999987653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.035 Score=50.58 Aligned_cols=94 Identities=20% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEEEe
Q 019479 112 DRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~ 184 (340)
+++.+||-+| +|.|..+..+++.. +.+|+++|.+++..+.+++... . .++..+-.++. .....+|+|+-
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGC-D--RPINYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCC-c--EEEecCChhHHHHHHHhcCCCCCEEEE
Confidence 5789999999 45788888888875 6799999999998888876321 1 12211111100 11246999986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..- ..++.+.+.|+++|++++...
T Consensus 238 ~~g~-------~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 238 SVGG-------AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp CSCT-------HHHHHHHHHEEEEEEEEECCC
T ss_pred CCCH-------HHHHHHHHHHhcCCEEEEEeC
Confidence 5431 477889999999999988753
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.27 Score=48.80 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=93.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHhCC--------------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEP-------------------------- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~-------------------------- 158 (340)
+...|+-+|||-=.....+....+ +.+++=+|. |+.++.-++.+.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 457899999999888887766533 567888898 666554433221
Q ss_pred -CCCcEEEEcCCCCCC----------C-CCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCC---ch
Q 019479 159 -LKECTIIEGDAEDLP----------F-PTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYP---TF 221 (340)
Q Consensus 159 -~~~i~~~~~d~~~~~----------~-~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~---~~ 221 (340)
..+..++..|+.+.. + ....-=++++-.++.+++.. .++|+.+.+ + ++|.+++.+...+ ..
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC
Confidence 036778889997631 1 22223467778888888654 367887775 4 6777776664433 11
Q ss_pred hHhh-HhhhH---------hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 222 WLSR-FFADV---------WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 222 ~~~~-~~~~~---------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
...+ ..... ...+.+.++..+.|.+.||+.+...++...
T Consensus 264 ~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~~~ 312 (695)
T 2zwa_A 264 PFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQL 312 (695)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHHHH
T ss_pred hHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHHHH
Confidence 1111 11111 112567999999999999998888876543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.039 Score=49.89 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=64.6
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEEe
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~~ 184 (340)
++.+||-+|+| .|..+..+++.. +. +|+++|.+++..+.+++... . .++..+-.++. .....+|+|+-
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga-~--~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGA-D--YVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTC-S--EEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCC-C--EEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 78899999996 378888888875 56 89999999999888886432 1 11111111110 11235999986
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.... ...++.+.+.|+++|+++....
T Consensus 243 ~~g~------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 243 FSGA------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEcc
Confidence 5331 3567889999999999988754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.029 Score=50.22 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=65.8
Q ss_pred CCCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEE
Q 019479 111 FDRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRY 182 (340)
Q Consensus 111 ~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v 182 (340)
.+++.+||-+| +|.|..+..+++.. +.+|+++|.+++..+.+++.... ..+..+-.++. .....+|+|
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~---~~~~~~~~~~~~~~~~~~~~~g~Dvv 213 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKALGAW---ETIDYSHEDVAKRVLELTDGKKCPVV 213 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCC---EEEeCCCccHHHHHHHHhCCCCceEE
Confidence 35789999999 35688888888875 67999999999999998865321 12211111110 123469999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-+..- ..+..+.+.|++||++++...
T Consensus 214 id~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 214 YDGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred EECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 865432 356788999999999988753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=51.12 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=65.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC---CCC-----CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE---DLP-----FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~---~~~-----~~~~~fD~ 181 (340)
.++++||.+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . .++ |.. ++. ...+.+|+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~-~--~~~--d~~~~~~~~~~~~~~~~~~~D~ 241 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGG-E--VFI--DFTKEKDIVGAVLKATDGGAHG 241 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTC-C--EEE--ETTTCSCHHHHHHHHHTSCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCC-c--eEE--ecCccHhHHHHHHHHhCCCCCE
Confidence 57899999998 5778888887764 6799999999888888875321 1 111 322 110 11126899
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|+.+... ...++.+.+.|+++|++++....
T Consensus 242 vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 242 VINVSVS------EAAIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp EEECSSC------HHHHHHHTTSEEEEEEEEECCCC
T ss_pred EEECCCc------HHHHHHHHHHHhcCCEEEEEeCC
Confidence 9865432 35788899999999999887543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.096 Score=46.89 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
..+...++.... .++..|||.-||+|..+....+. +.+.+|+|+++..++.+++++.
T Consensus 239 ~~l~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 239 AKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp THHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 345555554432 47899999999999999988777 8899999999999999998854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.29 Score=44.15 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
+++.+||-.|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . ..+ |..+.. .....+|+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~--d~~~~~~~~~~~~~~~~~~~D~ 242 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-H--EVF--NHREVNYIDKIKKYVGEKGIDI 242 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCC-C--EEE--eCCCchHHHHHHHHcCCCCcEE
Confidence 57899999997 5677888888775 6799999999998888775421 1 111 221111 11236999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+.+..- ..+..+.+.|+++|++++...
T Consensus 243 vi~~~G~-------~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 243 IIEMLAN-------VNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp EEESCHH-------HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHhccCCCEEEEEec
Confidence 9865431 357788999999999988753
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.039 Score=50.64 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC------CC-CC-CC-CCCCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGD------AE-DL-PF-PTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d------~~-~~-~~-~~~~fD 180 (340)
.++.+||-+|+| .|..+..+++.. + .+|+++|.+++..+.+++... . .++..+ +. .+ .. ....+|
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~~~v~~~~~g~g~D 269 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLKLAEEIGA-D--LTLNRRETSVEERRKAIMDITHGRGAD 269 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHHHHHHTTC-S--EEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHc-CCceEEEEcCCHHHHHHHHHcCC-c--EEEeccccCcchHHHHHHHHhCCCCCc
Confidence 578999999976 478888888886 5 699999999999999986422 1 122211 10 00 01 123699
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|+-.... ...++.+.+.|+++|++++....
T Consensus 270 vvid~~g~------~~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 270 FILEATGD------SRALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp EEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEecC
Confidence 99864331 13578889999999999887543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=2.5 Score=37.47 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=82.3
Q ss_pred CEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC-CCCCccEEEecCcccc--
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEY-- 190 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~-- 190 (340)
.+|||+=||.|.++.-+.+. |. .+.++|+++.+++.-+.+.. -.++.+|+.++.. .-..+|+++...-...
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~---~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS 75 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIGGPPSQSWS 75 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC---SEEEESCGGGCCGGGSCCCSEEECCCCGGGTE
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC---CCcccCChhhCCHhhCCcccEEEecCCCCCcC
Confidence 47999999999999988776 54 46689999999999887754 3578899977642 2245899987543332
Q ss_pred -------cCCHH-HHHHH---HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 191 -------WPDPQ-RGIKE---AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 191 -------~~d~~-~~l~~---~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
..|+. .++.+ +.+.++|. +++.+.+..-... . .-...+.+.+.|++.||.+. ...+..
T Consensus 76 ~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~-~-------~~~~~~~i~~~l~~~GY~v~-~~vlna 144 (331)
T 3ubt_Y 76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQ-R-------HNKAVQEFIQEFDNAGYDVH-IILLNA 144 (331)
T ss_dssp ETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGC-T-------TSHHHHHHHHHHHHHTEEEE-EEEEEG
T ss_pred CCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccc-c-------ccchhhhhhhhhccCCcEEE-EEeccc
Confidence 23443 34333 44456774 4445444321100 0 01134667788999999853 444443
Q ss_pred ccc
Q 019479 260 KWY 262 (340)
Q Consensus 260 ~~~ 262 (340)
..|
T Consensus 145 ~~y 147 (331)
T 3ubt_Y 145 NDY 147 (331)
T ss_dssp GGT
T ss_pred ccC
Confidence 333
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.072 Score=47.99 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
+++.+||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . .++ |..+.. .....+|+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~ga-~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKALGA-D--ETV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEE--cCCcccHHHHHHHHhCCCCceE
Confidence 57899999998 6788888888875 6799999999999988876421 1 111 222111 11246999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+-... . ..++.+.+.|+++|++++...
T Consensus 239 vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 239 VVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp EEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred EEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 987654 2 246788899999999987653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.35 Score=43.62 Aligned_cols=92 Identities=9% Similarity=-0.037 Sum_probs=64.0
Q ss_pred CCC--CEEEEEcC--ccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCc
Q 019479 112 DRN--MRVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYA 179 (340)
Q Consensus 112 ~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~f 179 (340)
+++ .+||-.|+ |.|..+..+++.. +. +|+++|.+++..+.+++..... .. .|..+.. ...+.+
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~--~~--~d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFD--AA--INYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCS--EE--EETTTSCHHHHHHHHCTTCE
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc--eE--EecCchHHHHHHHHhcCCCC
Confidence 467 89999997 5677777777775 66 9999999998888887643321 11 1221111 112268
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
|+++.+.. ...++.+.+.|++||++++..
T Consensus 232 d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 232 DVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp EEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred CEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 99986544 256888999999999998764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.61 Score=35.63 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=54.8
Q ss_pred CCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~ 187 (340)
..+|+-+|||. ++..+++.+ .+.+|+++|.+++.++.+++ .++.++.+|..+.. .....+|+|+....
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----EGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 45799999964 444333322 27899999999998888775 34678888886521 12346898887432
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
+.. ..+....+.+. ..+++..
T Consensus 80 -----~~~~n~~~~~~a~~~~-~~~iia~ 102 (141)
T 3llv_A 80 -----DDEFNLKILKALRSVS-DVYAIVR 102 (141)
T ss_dssp -----CHHHHHHHHHHHHHHC-CCCEEEE
T ss_pred -----CHHHHHHHHHHHHHhC-CceEEEE
Confidence 322 23334444455 4555444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.14 Score=45.15 Aligned_cols=93 Identities=22% Similarity=0.319 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCC-CC-CCCCCccEEEecCcccccC--------------------CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 160 KECTIIEGDAED-LP-FPTDYADRYVSAGSIEYWP--------------------DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 160 ~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~--------------------d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.+++++++|..+ +. +++++||+|+++--..... ....+++++.++|||||.+++....
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 456889999865 22 4678899999975543221 1135678999999999999887432
Q ss_pred CCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 218 YPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
..... ... .....+.....+..+++++||......
T Consensus 100 ~~~~~-~~~--g~~~~~~~~~~l~~~~~~~Gf~~~~~i 134 (297)
T 2zig_A 100 VAVAR-RRF--GRHLVFPLHADIQVRCRKLGFDNLNPI 134 (297)
T ss_dssp EEEEC-C------EEEECHHHHHHHHHHHTTCEEEEEE
T ss_pred Ccccc-ccC--CcccccccHHHHHHHHHHcCCeeeccE
Confidence 11000 000 000001113567788999999876543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.53 E-value=0.025 Score=50.00 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CCCCCCCCCccEEEecCc
Q 019479 111 FDRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 111 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~ 187 (340)
.+++.+||-+|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . .++..+- .++...-+.+|+|+- ..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga-~--~~~~~~~~~~~~~~~~~~d~vid-~g 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGA-E--EAATYAEVPERAKAWGGLDLVLE-VR 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTC-S--EEEEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCC-C--EEEECCcchhHHHHhcCceEEEE-CC
Confidence 457899999997 5688888888875 6799999999998888875321 1 1111110 010000046999986 32
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
- ..++.+.+.|+++|+++...
T Consensus 198 ~-------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 198 G-------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp C-------TTHHHHHTTEEEEEEEEEC-
T ss_pred H-------HHHHHHHHhhccCCEEEEEe
Confidence 2 25788899999999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.055 Score=49.05 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEEEe
Q 019479 112 DRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~ 184 (340)
+++.+||-+| +|.|..+..+++.. +.+|+++|.+++..+.+++.... ..+..+-.++. .....+|+|+-
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~---~~~~~~~~~~~~~~~~~~~~g~Dvvid 241 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAK---RGINYRSEDFAAVIKAETGQGVDIILD 241 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHHSSCEEEEEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCC---EEEeCCchHHHHHHHHHhCCCceEEEE
Confidence 5789999995 34688888888875 67999999999999988875321 11211111110 11346999987
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..- ..+..+.+.|+++|++++...
T Consensus 242 ~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 242 MIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp SCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 5442 256788899999999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.25 Score=44.03 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
+++++||-.| +|.|..+..+++.. +.+|+++|.+++..+.+++... . ..+ |..+.. .....+|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~g~-~--~~~--~~~~~~~~~~~~~~~~~~~~D~ 212 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGA-W--QVI--NYREEDLVERLKEITGGKKVRV 212 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-C--EEE--ECCCccHHHHHHHHhCCCCceE
Confidence 5789999999 35677777777765 6799999999988888876421 1 111 221111 11236999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.+.. ...++.+.+.|++||++++...
T Consensus 213 vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 213 VYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 987644 2357888999999999988753
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.1 Score=46.62 Aligned_cols=95 Identities=16% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCC-EEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CC--CCCCCCCccEEEec
Q 019479 112 DRNM-RVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA-ED--LPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~--~~~~~~~fD~v~~~ 185 (340)
.++. +||-+|+ |.|..+..+++.. +.+|++++.+++..+.+++... ..+ +-..+. .+ .....+.+|+|+-.
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa-~~~-i~~~~~~~~~~~~~~~~~~d~vid~ 223 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGA-KEV-LAREDVMAERIRPLDKQRWAAAVDP 223 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTC-SEE-EECC---------CCSCCEEEEEEC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHcCC-cEE-EecCCcHHHHHHHhcCCcccEEEEC
Confidence 3454 7999997 5788888888885 6789999999888888876422 111 111111 01 01223469998864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..- ..+..+.+.|++||++++...
T Consensus 224 ~g~-------~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 224 VGG-------RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp STT-------TTHHHHHHTEEEEEEEEECSC
T ss_pred CcH-------HHHHHHHHhhccCCEEEEEee
Confidence 331 246788899999999988753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.47 Score=42.77 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~ 183 (340)
.++.+||-.|+ |.|..+..+++.. +.+|+++|.+++.++.+++... . ..+..+-.+. . .....+|+++
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 236 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKLGA-A--AGFNYKKEDFSEATLKFTKGAGVNLIL 236 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTC-S--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC-c--EEEecCChHHHHHHHHHhcCCCceEEE
Confidence 57899999984 5778888888774 6799999999998888865422 1 1111111110 0 1224699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+..- ..+..+.+.|++||++++...
T Consensus 237 ~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 237 DCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp ESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred ECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 65442 146778899999999988754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.095 Score=47.53 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+||-+|+| .|..+..+++.. +.+|+++|.+++..+.+++......+ +-..+.+.+....+.+|+|+-...-.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~g~D~vid~~g~~-- 255 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDY-VIGSDQAKMSELADSLDYVIDTVPVH-- 255 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCE-EETTCHHHHHHSTTTEEEEEECCCSC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCcee-eccccHHHHHHhcCCCCEEEECCCCh--
Confidence 78999999986 477788888875 67999999999888888744432221 11111100000113699998644321
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..++.+.+.|++||++++...
T Consensus 256 ----~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 256 ----HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ----CCSHHHHTTEEEEEEEEECSC
T ss_pred ----HHHHHHHHHhccCCEEEEeCC
Confidence 135667889999999988753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.26 Score=44.32 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=63.6
Q ss_pred CCCEEEEEc-Cc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEEec
Q 019479 113 RNMRVVDVG-GG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~~ 185 (340)
++.+||-+| +| .|..+..+++.. +.+|+++|.+++..+.+++... . .++..+ +++ ......+|+|+-.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa-~--~vi~~~-~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGA-D--IVLNHK-ESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTC-S--EEECTT-SCHHHHHHHHTCCCEEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCC-c--EEEECC-ccHHHHHHHhCCCCccEEEEC
Confidence 688999994 44 688888888875 6799999999999999987532 1 111111 110 0123469998863
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. .....+..+.+.|+++|+++...
T Consensus 225 ~------g~~~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 225 F------NTDMYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp S------CHHHHHHHHHHHEEEEEEEEESS
T ss_pred C------CchHHHHHHHHHhccCCEEEEEC
Confidence 2 23456788999999999997653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.17 Score=45.26 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=48.2
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCH---HHHHHHHHhCC
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEP 158 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~---~~~~~a~~~~~ 158 (340)
....+...++.... .++..|||.-||+|..+....+. +.+.+|+|+++ ..++.+++++.
T Consensus 227 kp~~l~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 227 KPAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CCHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHH
Confidence 34556666665543 47899999999999999998887 78999999999 99999998864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.15 Score=46.30 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=62.4
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+||-+|+| .|..+..+++.. +.+|+++|.+++..+.+++...... ++.. +.+.+....+.+|+|+-......
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~--v~~~~~~~~~~~~~~~~D~vid~~g~~~ 263 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGADS--FLVSRDQEQMQAAAGTLDGIIDTVSAVH 263 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCSE--EEETTCHHHHHHTTTCEEEEEECCSSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCce--EEeccCHHHHHHhhCCCCEEEECCCcHH
Confidence 78899999986 377788888875 6799999999998888875443221 1111 10001001136999986543221
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++.+.+.|+++|+++....
T Consensus 264 ------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 264 ------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ------CSHHHHHHEEEEEEEEECCC
T ss_pred ------HHHHHHHHHhcCCEEEEEcc
Confidence 24567789999999987754
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.42 Score=43.71 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHhCCCC-CcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPLK-ECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~~~~-~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
.+..|+|+|.|+|.++..+++.. ...+++.||+|+...+.-++++... ++.+. .+++++| +. .-+|++
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~-~~l~~lp--~~-~~~viA 155 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVP--EG-PAVILA 155 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSC--CS-SEEEEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEe-CChhhcC--CC-CeEEEe
Confidence 35679999999999999887642 2358999999998888766665432 34433 3445554 22 457888
Q ss_pred cCcccccC
Q 019479 185 AGSIEYWP 192 (340)
Q Consensus 185 ~~~l~~~~ 192 (340)
+.++..++
T Consensus 156 NE~fDAlP 163 (387)
T 1zkd_A 156 NEYFDVLP 163 (387)
T ss_dssp ESSGGGSC
T ss_pred ccccccCc
Confidence 88877665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.41 Score=42.74 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=64.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
.++.+||-.|+ |.|..+..+++.. +.+|+++|.+++..+.+++... . ..+ |..+.. .....+|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~g~-~--~~~--d~~~~~~~~~i~~~~~~~~~d~ 217 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGC-H--HTI--NYSTQDFAEVVREITGGKGVDV 217 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTC-S--EEE--ETTTSCHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC-C--EEE--ECCCHHHHHHHHHHhCCCCCeE
Confidence 57899999995 6788888888775 6799999999988888876421 1 111 222111 11235999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+.+..- ..++.+.+.|++||++++...
T Consensus 218 vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 218 VYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred EEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 9865432 357888999999999988753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.14 Score=46.01 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=62.9
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCccEEE
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~v~ 183 (340)
++.+||-+|+| .|..+..+++.. +. +|+++|.+++.++.+++. . . .++ |..+.. .....+|+|+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-~--~v~--~~~~~~~~~~~~~~~~~g~D~vi 236 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-D--RLV--NPLEEDLLEVVRRVTGSGVEVLL 236 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-S--EEE--CTTTSCHHHHHHHHHSSCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-H--hcc--CcCccCHHHHHHHhcCCCCCEEE
Confidence 78899999986 377888888875 66 899999999888777653 2 1 111 221111 0134599998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-...- ...++.+.+.|+++|++++...
T Consensus 237 d~~g~------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 237 EFSGN------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp ECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred ECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 64321 3467889999999999988754
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.097 Score=47.75 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=62.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~ 184 (340)
.++.+||-+|+ +.|..+..+++.. +.+|+++. +++-.+.+++.-. . .++...-.++ ....+.+|+|+-
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSRGA-E--EVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHcCC-c--EEEECCCchHHHHHHHHccCCccEEEE
Confidence 47899999998 3789999999885 67898885 8888888876432 1 1222111111 012345999985
Q ss_pred cCcccccCCHHHHHHHHHHhc-ccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVL-KIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~L-kpgG~l~i~~ 215 (340)
.-. ....+..+.+.| ++||++++..
T Consensus 238 ~~g------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 238 CIT------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SSC------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CCC------chHHHHHHHHHhhcCCCEEEEEe
Confidence 332 234678888888 6999998775
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.34 Score=43.90 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=61.5
Q ss_pred CCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCH---HHHHHHHHhCCCCCcEEEEcCCCCCCCC------CCCccEEE
Q 019479 114 NMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKECTIIEGDAEDLPFP------TDYADRYV 183 (340)
Q Consensus 114 ~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~---~~~~~a~~~~~~~~i~~~~~d~~~~~~~------~~~fD~v~ 183 (340)
+.+||-+|+| .|..+..+++.. +.+|+++|.++ +..+.+++.. ...+ | .+ .+. .+.+|+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~g----a~~v--~-~~-~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEETK----TNYY--N-SS-NGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHHT----CEEE--E-CT-TCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHhC----Ccee--c-hH-HHHHHHHHhCCCCCEEE
Confidence 8899999985 366777777765 56999999988 7778877542 2222 2 22 111 14699998
Q ss_pred ecCcccccCCHHHHH-HHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYWPDPQRGI-KEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l-~~~~~~LkpgG~l~i~~~~ 217 (340)
...... ..+ +.+.+.|+++|++++....
T Consensus 252 d~~g~~------~~~~~~~~~~l~~~G~iv~~g~~ 280 (366)
T 2cdc_A 252 DATGAD------VNILGNVIPLLGRNGVLGLFGFS 280 (366)
T ss_dssp ECCCCC------THHHHHHGGGEEEEEEEEECSCC
T ss_pred ECCCCh------HHHHHHHHHHHhcCCEEEEEecC
Confidence 654321 245 8889999999999887543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.59 E-value=2.2 Score=32.02 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~ 187 (340)
+.+|+-+|+|. .+..+++.+ .+.+|+++|.+++.++...+.. ++.++.+|..+.. .....+|+|+....
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---CcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 46899998853 333333321 2679999999998877665432 4566777764321 11345899887532
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
-. .....+..+.+.++++ .+++.
T Consensus 79 ~~---~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 79 KE---EVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp CH---HHHHHHHHHHHHTTCC-CEEEE
T ss_pred Cc---hHHHHHHHHHHHcCCC-EEEEE
Confidence 11 1123455566667775 55443
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.097 Score=46.80 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCCC-EEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-CCCCCCccEEEecCc
Q 019479 112 DRNM-RVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~ 187 (340)
.++. +||-+|+ |.|..+..+++.. +.+|++++.+++..+.+++.....-+.....+.+.. ......+|+|+-...
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g 226 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG 226 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCc
Confidence 3554 8999997 5788888888875 678999999988888887643211011111111111 122346999886432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ..+..+.+.|++||++++...
T Consensus 227 -----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 227 -----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp -----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred -----H--HHHHHHHHhhcCCCEEEEEec
Confidence 2 367889999999999988754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.42 Score=44.65 Aligned_cols=98 Identities=15% Similarity=0.019 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----------------
Q 019479 111 FDRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL---------------- 172 (340)
Q Consensus 111 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~---------------- 172 (340)
.+++.+||-+|+ |.|..+..+++.. +.++++++.+++..+.+++.....-+.....|+.+.
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLA 296 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHH
Confidence 357899999997 4688888888875 789999999999999987642211111111122100
Q ss_pred ----CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 173 ----PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 173 ----~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
......+|+|+-.... ..++.+.+.|++||++++...
T Consensus 297 ~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 297 KLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred HHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence 0013469999864332 367888899999999988754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.15 Score=45.31 Aligned_cols=93 Identities=17% Similarity=0.075 Sum_probs=60.8
Q ss_pred CCCCEEEEEc-C-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVG-G-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiG-c-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
+++.+||-+| + |.|..+..+++.. +.+|++++ ++...+.+++.... .++..+-.+ +...-..+|+|+-...
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~lGa~---~~i~~~~~~~~~~~~~g~D~v~d~~g- 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKALGAE---QCINYHEEDFLLAISTPVDAVIDLVG- 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHHTCS---EEEETTTSCHHHHCCSCEEEEEESSC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHcCCC---EEEeCCCcchhhhhccCCCEEEECCC-
Confidence 5789999997 4 4688999999886 67999998 45557777765321 122111111 1111146899885432
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. .+..+.+.|++||+++....
T Consensus 225 -----~~-~~~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 225 -----GD-VGIQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -----HH-HHHHHGGGEEEEEEEEECCS
T ss_pred -----cH-HHHHHHHhccCCCEEEEeCC
Confidence 22 33888999999999987753
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.086 Score=48.14 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEec
Q 019479 111 FDRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSA 185 (340)
Q Consensus 111 ~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~ 185 (340)
..++.+||-+| .|.|..+..+++.. +.+|++++ +++..+.+++... . .++..+-.++. .....+|+|+-.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~~~~~g~D~vid~ 255 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKLGA-D--DVIDYKSGSVEEQLKSLKPFDFILDN 255 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHTTC-S--EEEETTSSCHHHHHHTSCCBSEEEES
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHcCC-C--EEEECCchHHHHHHhhcCCCCEEEEC
Confidence 35789999999 34788888888885 67999999 6777788765321 1 11211111100 011469999864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. .....+....+.|++||+++....
T Consensus 256 ~g-----~~~~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 256 VG-----GSTETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp SC-----TTHHHHGGGGBCSSSCCEEEESCC
T ss_pred CC-----ChhhhhHHHHHhhcCCcEEEEeCC
Confidence 33 222356777889999999987653
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.39 Score=41.12 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC----------CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF----------PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~----------~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.+++.++...+... .++.++..|+.+... .-+..
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFG-PRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 57889988877653 34445554 7899999999988776665432 467888999876320 01368
Q ss_pred cEEEecCcccccC-----CH---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWP-----DP---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+++.+....... +. + .+.+.+.+.++.+|+++.+..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 9998876554321 11 1 245566677777888877743
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.25 E-value=0.83 Score=42.73 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---------------
Q 019479 111 FDRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------------- 173 (340)
Q Consensus 111 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------------- 173 (340)
.+++.+||-+|+ |.|..+..+++.. +.++++++.+++-++.+++.-.. .++...-.+..
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~lGa~---~vi~~~~~d~~~~~~~~~~~~~~~~~ 301 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAMGAE---AIIDRNAEGYRFWKDENTQDPKEWKR 301 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCC---EEEETTTTTCCSEEETTEECHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCc---EEEecCcCcccccccccccchHHHHH
Confidence 357899999997 4688888888885 78999999999999999765321 11111111100
Q ss_pred --------CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 174 --------FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 --------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.....+|+|+-... . ..+..+.+.|++||++++...
T Consensus 302 ~~~~i~~~t~g~g~Dvvid~~G------~-~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 302 FGKRIRELTGGEDIDIVFEHPG------R-ETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHHTSCCEEEEEECSC------H-HHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHHhCCCCCcEEEEcCC------c-hhHHHHHHHhhCCcEEEEEec
Confidence 11246999886432 1 468889999999999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.11 Score=46.73 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=63.9
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-+|+ |.|..+..+++.. +.+|+++ .+++.++.+++... ..+. +-.++. .....+|+|+
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~lGa----~~i~-~~~~~~~~~~~~~~~~g~D~vi 221 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDLGA----TPID-ASREPEDYAAEHTAGQGFDLVY 221 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHHTS----EEEE-TTSCHHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHcCC----CEec-cCCCHHHHHHHHhcCCCceEEE
Confidence 57899999994 4688888888875 6799999 88988888876532 2222 221111 1224699988
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+.. . ..+..+.+.|+++|++++...
T Consensus 222 d~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 222 DTLG-----G--PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp ESSC-----T--HHHHHHHHHEEEEEEEEESCC
T ss_pred ECCC-----c--HHHHHHHHHHhcCCeEEEEcc
Confidence 6433 1 467888999999999987643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.2 Score=35.71 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----C-CCCCccEEEec
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----F-PTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~-~~~~fD~v~~~ 185 (340)
.+.+|+-+|+|. |......+.. . +.+|+++|.+++.++.+++ .++.++.+|..+.. . .-..+|+|+..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~~~~~~~~~----~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRA-RYGKISLGIEIREEAAQQHRS----EGRNVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCHHHHHHHHH----TTCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCHHHHHHHHH----CCCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 456899999863 3333222222 2 5789999999988887764 24566777775421 1 23458988874
Q ss_pred CcccccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 186 GSIEYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 186 ~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
. ++.. ..+-...+.+.|++.++..
T Consensus 113 ~-----~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 113 M-----PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp C-----SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred C-----CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 2 2332 2233455566777777664
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.07 E-value=2.3 Score=40.10 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCC-----------------
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPF----------------- 174 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~----------------- 174 (340)
..+++|+-||.|.++.-+.+. |. .|.++|+++.+++.-+.+.. .++..++.+|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 468999999999999998776 54 47899999999998887753 2455677888865321
Q ss_pred CCCCccEEEecCccc
Q 019479 175 PTDYADRYVSAGSIE 189 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~ 189 (340)
..+.+|+++...-..
T Consensus 166 ~~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQ 180 (482)
T ss_dssp HSCCCSEEEEECCCC
T ss_pred cCCCCCEEEecCCCc
Confidence 113589998754443
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.57 Score=41.21 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCce---EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---C-CCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKN---VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---P-TDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~-~~~fD~v~~ 184 (340)
....+++|+-||.|.++..+.+. |.+ |.++|+++.+++..+.+. ++..+..+|+.++.. + .+.+|+++.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~--~~~~~~~~DI~~i~~~~i~~~~~~Dll~g 89 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRH--QGKIMYVGDVRSVTQKHIQEWGPFDLVIG 89 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHT--TTCEEEECCGGGCCHHHHHHTCCCSEEEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhC--CCCceeCCChHHccHHHhcccCCcCEEEe
Confidence 35679999999999999988876 554 589999999998877765 344678899977541 1 135899997
Q ss_pred cC
Q 019479 185 AG 186 (340)
Q Consensus 185 ~~ 186 (340)
..
T Consensus 90 gp 91 (295)
T 2qrv_A 90 GS 91 (295)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.1 Score=47.86 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|+-+|+|. |..+...+..+ +.+|+++|.++..++.+++..... +.....+..++.-.-..+|+|+..-.....
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~~-~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~ 244 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCGR-IHTRYSSAYELEGAVKRADLVIGAVLVPGA 244 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTTS-SEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCCe-eEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 578999999963 55555555554 569999999999888877643321 211111111110001247999874322211
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.-+.++..+.+||||+++.+.
T Consensus 245 ~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 245 KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCcceecHHHHhcCCCCcEEEEEe
Confidence 111122456778899999886553
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.02 E-value=3.6 Score=34.17 Aligned_cols=138 Identities=10% Similarity=0.065 Sum_probs=73.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCC-CCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAE-DLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~-~~~~~~~~fD~v~~~~~l 188 (340)
.+++||-.|+ +|..+..+++.+ .+.+|++++.++...+.... .++ .++.+|+. .+...-+..|+|+.+...
T Consensus 20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----RGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----TTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----CCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence 5788998876 344444333332 37899999998877665543 367 88999986 222122368999987766
Q ss_pred cccCCHHHH-------HHHHHHhcc--cCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYWPDPQRG-------IKEAYRVLK--IGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~~d~~~~-------l~~~~~~Lk--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
....++... ...+.+.++ ..++++.+............ ........+....++++++.|+...-+..
T Consensus 95 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~-~~~~~Y~~sK~~~e~~~~~~gi~~~~lrp 170 (236)
T 3e8x_A 95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGP-MNMRHYLVAKRLADDELKRSSLDYTIVRP 170 (236)
T ss_dssp CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSC-GGGHHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCh-hhhhhHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 554444322 122222222 23667665432211110000 00000011344566677888887655444
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.95 Score=41.85 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=60.9
Q ss_pred CCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
..+|+-+|+|. |......+.. .+..|+++|.+++.++.+++ .++.++.+|..+.. ..-..+|+|++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~~v~~~~~----~g~~vi~GDat~~~~L~~agi~~A~~viv~~-- 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAAKAEVLINAI-- 76 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHHHHHHHHH----TTCCCEESCTTCHHHHHHTTTTTCSEEEECC--
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHh----CCCeEEEcCCCCHHHHHhcCCCccCEEEECC--
Confidence 45788899864 3333333333 37899999999999998875 34668899997632 2335689888742
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
++.. ..+....+.+.|...++..
T Consensus 77 ---~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 ---DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp ---SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ---CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3443 3455666777888777765
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.55 E-value=3.2 Score=35.52 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++||-.|+ |..+..+++.+ .+.+|++++.++...+.... .+++++.+|+.++. -..+|+|+.........
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----SGAEPLLWPGEEPS--LDGVTHLLISTAPDSGG 77 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----TTEEEEESSSSCCC--CTTCCEEEECCCCBTTB
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----CCCeEEEecccccc--cCCCCEEEECCCccccc
Confidence 68999995 77777666654 26799999998876655443 56899999998865 45689999876655443
Q ss_pred CH
Q 019479 193 DP 194 (340)
Q Consensus 193 d~ 194 (340)
++
T Consensus 78 ~~ 79 (286)
T 3ius_A 78 DP 79 (286)
T ss_dssp CH
T ss_pred cH
Confidence 33
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.12 Score=47.23 Aligned_cols=101 Identities=19% Similarity=0.192 Sum_probs=57.1
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++++|+-+|+| .|..+...+... +.+|+++|.++...+.+.+.... .+.....+..++.-.-..+|+|+..-.....
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVFGG-RVITLTATEANIKKSVQHADLLIGAVLVPGA 242 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-SEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhcCc-eEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence 46899999996 344455555554 67999999999888777654332 1211111111111001257999875443211
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.-+.++..+.+|+||.++.+.
T Consensus 243 ~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 243 KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ---CCSCHHHHTTSCTTCEEEECC
T ss_pred ccchhHHHHHHHhhcCCCEEEEEe
Confidence 111123467778899999876654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.53 Score=41.96 Aligned_cols=88 Identities=15% Similarity=-0.004 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCC-CC-CCCCCccEEEecCccccc--------------CCHHHHHHHHHHhcccCcEEEEEccCC--Cch
Q 019479 160 KECTIIEGDAED-LP-FPTDYADRYVSAGSIEYW--------------PDPQRGIKEAYRVLKIGGKACVIGPVY--PTF 221 (340)
Q Consensus 160 ~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~--------------~d~~~~l~~~~~~LkpgG~l~i~~~~~--~~~ 221 (340)
.+..++++|..+ +. +++++||+|++.--.... ......++++.++|||||.+++..... ...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~ 92 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV 92 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence 456788898754 33 457889999986444221 123578899999999999998874332 100
Q ss_pred hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 222 WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
... .......+.++++++||......
T Consensus 93 ~~~--------~~~~~~~i~~~~~~~Gf~~~~~i 118 (323)
T 1boo_A 93 PAR--------SIYNFRVLIRMIDEVGFFLAEDF 118 (323)
T ss_dssp EEE--------CCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccc--------ccchHHHHHHHHHhCCCEEEEEE
Confidence 000 00112345567889999876543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.67 Score=40.29 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++.+|--|++.|. .+..|++. |.+|+.+|.+++.++.+.+... .++.++.+|+.+.. -.-+..
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~~~l~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIG-GGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-TTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 67888888887773 45556665 8999999999998887765543 45677888986532 012568
Q ss_pred cEEEecCcccccC--------CHH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWP--------DPQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~--------d~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+++.+-...... +++ ...+.+.+.|+.+|.++.+..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS 160 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS 160 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence 9988776543321 111 345667778888888877643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.42 E-value=0.14 Score=46.65 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|+-+|+| .|..+..++... +.+|+++|.+++..+.+++... ..+.....+..++.-.-..+|+|+........
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 45899999986 455566666665 5699999999988887765422 12222211111110011258999875543321
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.-+.++..+.++|||+++...
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEe
Confidence 111112355677899999887654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.19 Score=45.92 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=59.1
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC--C-------------------
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA--E------------------- 170 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~--~------------------- 170 (340)
++.+|+-+|+|. |..+..++..+ +.+|+++|.++...+.+++. +.+++..+. .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l----Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV----GAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT----TCEECCCC-------------CHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 578999999984 66666666665 67999999999988888763 123322110 0
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 171 ~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.+.-.-...|+|+..-.+-.-..+.-+-+++.+.+|||+.++-+
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 00001146899996532211111112347888899998877544
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=1.3 Score=41.98 Aligned_cols=90 Identities=19% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..+++|+-+|+| .|......++.+ +.+|+++|.++...+.+++. +.++ .++.+. -...|+|+....-.+
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----Ga~~--~~l~e~---l~~aDvVi~atgt~~ 341 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----GFDV--VTVEEA---IGDADIVVTATGNKD 341 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----TCEE--CCHHHH---GGGCSEEEECSSSSC
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----CCEE--ecHHHH---HhCCCEEEECCCCHH
Confidence 478999999997 355555556655 67999999999887777643 2222 233221 135799998643333
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-+ .+..+.||+||+++....
T Consensus 342 ~i~-----~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 342 IIM-----LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp SBC-----HHHHHHSCTTCEEEECSS
T ss_pred HHH-----HHHHHhcCCCcEEEEeCC
Confidence 211 356778999999876654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=4.6 Score=34.28 Aligned_cols=102 Identities=8% Similarity=0.064 Sum_probs=64.5
Q ss_pred CCCEEEEEcCc--cch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCC----------
Q 019479 113 RNMRVVDVGGG--TGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPF---------- 174 (340)
Q Consensus 113 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~---------- 174 (340)
.++++|-.|++ .|. .+..++++ +.+|+.++.++...+.+.+. ....++.++.+|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 57889999976 332 45556665 78999999887554444332 333468899999976320
Q ss_pred CCCCccEEEecCcccc-------c--CCHH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 175 PTDYADRYVSAGSIEY-------W--PDPQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~-------~--~d~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..+..|+++.+..+.. + .+.+ .+++.+...++++|+++.+..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 0136899888765432 0 1111 245666777888898887643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.28 Score=45.18 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=59.4
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC-------------CCCC----
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE-------------DLPF---- 174 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~-------------~~~~---- 174 (340)
++.+|+-+|+|. |..+..++..+ +.+|+++|.++...+.+++. . .++...+.. +++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~-G---~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~ 263 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL-G---AKFIAVEDEEFKAAETAGGYAKEMSGEYQV 263 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT-T---CEECCCCC-----------------CHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-C---Cceeecccccccccccccchhhhcchhhhh
Confidence 578999999984 66666667765 67999999999888888763 1 222221110 0000
Q ss_pred --------CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 --------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 --------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.-...|+||..-.+..-..+.-+-+++.+.+|||..++-.
T Consensus 264 ~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 264 KQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEET
T ss_pred hhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEE
Confidence 0135799986432221112222346888999999887654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.64 E-value=4.3 Score=34.58 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CC-----CCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FP-----TDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~-----~~~f 179 (340)
.++++|-.|++.|. .+..+++. +.+|++++.+++..+...+... .++.++.+|+.+.. +. -+..
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888876542 34444444 7899999999887776665543 56788899986532 00 1357
Q ss_pred cEEEecCcccccC-----CH---H-----------HHHHHHHHhcccCcEEEEEccC
Q 019479 180 DRYVSAGSIEYWP-----DP---Q-----------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 180 D~v~~~~~l~~~~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|+++.+....... +. + .+.+.+.+.++.+|+++.+...
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 138 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 138 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 9999876553321 11 1 2344555556447888777544
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=3 Score=36.28 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=63.6
Q ss_pred CCCEEEEEcCccc-----hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGTG-----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G-----~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.++++|-.|++.| ..+..+++. +.+|+.++.++...+.+.+.. ...++.++.+|+.+.. + .-
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 5788999997632 245555665 789999999875444443321 1135788899996632 0 11
Q ss_pred CCccEEEecCcccc-------c--CCHH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEY-------W--PDPQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~-------~--~d~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+..+.. + .+.+ .+.+.+.+.++.+|+++.+..
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 46899998766542 0 1111 345666777788898887643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.15 E-value=2.9 Score=35.48 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.+++..+...+... .++.++.+|+.+.. + .-+..
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDIERARQAAAEIG-PAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-TTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888876552 34455555 7899999999887776655443 46788899996532 0 11368
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 84 d~lv~~Ag~~ 93 (259)
T 4e6p_A 84 DILVNNAALF 93 (259)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCcC
Confidence 9999876653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=0.39 Score=44.01 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=33.3
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
++.+|+-+|+| .|..+..+++.+ +.+|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 68899999998 466666777776 5689999999887777765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.78 E-value=3.3 Score=35.60 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC------------HHHHHHHHHh--CCCCCcEEEEcCCCCCC--
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS------------PHQLAKAKQK--EPLKECTIIEGDAEDLP-- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~--~~~~~i~~~~~d~~~~~-- 173 (340)
.+++||-.|++.|. .+..++++ +.+|+.+|.+ ...++.+... ....++.++.+|+.+..
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 57889888887653 34455555 7899999987 5444444322 12356888999997632
Q ss_pred ---C-----CCCCccEEEecCcccccC------CHH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 174 ---F-----PTDYADRYVSAGSIEYWP------DPQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ---~-----~~~~fD~v~~~~~l~~~~------d~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+ .-+..|+++.+....... +++ .+++.+.+.++.+|+++.+..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 0 013689999876653321 111 345666777778898877643
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.67 E-value=1.8 Score=39.12 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=70.6
Q ss_pred CCCEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
...+|.=||+|. | .++..+++. +.+|++.|.+++.++.+.+. ++.. ..+..+.--.....|+|++.-.-.
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~a~~~DvVi~~vp~~- 92 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE----GIAG-ARSIEEFCAKLVKPRVVWLMVPAA- 92 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT----TCBC-CSSHHHHHHHSCSSCEEEECSCGG-
T ss_pred cCCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC----CCEE-eCCHHHHHhcCCCCCEEEEeCCHH-
Confidence 457899999874 2 234445554 68999999999888777643 2211 112221100112359998754332
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+++++...|++|..++-.....+. +..++.+.+.+.|...+..-..+
T Consensus 93 --~v~~vl~~l~~~l~~g~iiId~st~~~~---------------~~~~~~~~l~~~g~~~vdapVsG 143 (358)
T 4e21_A 93 --VVDSMLQRMTPLLAANDIVIDGGNSHYQ---------------DDIRRADQMRAQGITYVDVGTSG 143 (358)
T ss_dssp --GHHHHHHHHGGGCCTTCEEEECSSCCHH---------------HHHHHHHHHHTTTCEEEEEEEEC
T ss_pred --HHHHHHHHHHhhCCCCCEEEeCCCCChH---------------HHHHHHHHHHHCCCEEEeCCCCC
Confidence 4457788888889887665443332211 23445566777788766654433
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.66 E-value=5.5 Score=32.93 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=47.3
Q ss_pred EEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCccEEEec
Q 019479 116 RVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYADRYVSA 185 (340)
Q Consensus 116 ~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~v~~~ 185 (340)
+||-.|++.|. .+..++++ +.+|+.+|.+++.++.+.+.. ..++.++..|+.+.. .....+|+++.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAE--GKATYLTGRSESKLSTVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence 57777776542 33444444 789999999998888777655 356788889986521 112345999877
Q ss_pred Cccc
Q 019479 186 GSIE 189 (340)
Q Consensus 186 ~~l~ 189 (340)
....
T Consensus 80 Ag~~ 83 (230)
T 3guy_A 80 AGSG 83 (230)
T ss_dssp CCCC
T ss_pred CCcC
Confidence 6544
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.33 E-value=3.6 Score=34.49 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v 182 (340)
.++++||-.|++.|. .+..++++ +.+|+++|.++..++...+... .++.+...|+.+.. ...+..|++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~id~l 88 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKL--GSKVIISGSNEEKLKSLGNALK-DNYTIEVCNLANKEECSNLISKTSNLDIL 88 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHC-SSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHhc-cCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 367889888876552 34444444 7899999999988777665443 46788888886521 112468999
Q ss_pred EecCccc
Q 019479 183 VSAGSIE 189 (340)
Q Consensus 183 ~~~~~l~ 189 (340)
+.+....
T Consensus 89 i~~Ag~~ 95 (249)
T 3f9i_A 89 VCNAGIT 95 (249)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 9876543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=2.1 Score=33.25 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~ 186 (340)
..+.+|+-+|+|. |......+.. .+.+|+++|.+++.++.+++ ..+..++.+|..+.. ..-..+|+|+...
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~~~~~~~~~---~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNEYAFHRLNS---EFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCGGGGGGSCT---TCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHh---cCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 4678999999864 4433333333 26799999998876554431 234566667764311 1123589888753
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.- +.....+..+.+.+.+...++...
T Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 93 ND---DSTNFFISMNARYMFNVENVIARV 118 (155)
T ss_dssp SC---HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred CC---cHHHHHHHHHHHHHCCCCeEEEEE
Confidence 21 111233344445455555655543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=0.33 Score=44.75 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=57.8
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC---------------------
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE--------------------- 170 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~--------------------- 170 (340)
++.+|+-+|+| .|..+..+++.+ +.+|+++|.++...+.+++. . .++...|..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~l-G---a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-G---AEFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHHT-T---CEECCC--------CCHHHHHHSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-C---CEEEEecccccccccccchhhccHHHHHHH
Confidence 57899999998 466666777776 57999999999888777543 2 222211110
Q ss_pred --CCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 171 --DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 171 --~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+.-.-...|+|+..-.+-.-..+.-+-++..+.+||||+++-+.
T Consensus 246 ~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 246 MELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 010001247999875222111111112256778899999887653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=87.04 E-value=2 Score=37.06 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+.+.+.. ..++.++.+|+.+.. + .-+..
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKI-GCGAAACRVDVSDEQQIIAMVDACVAAFGGV 104 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHH-CSSCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc-CCcceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888876653 34555555 789999999988777665544 256788899997632 0 01368
Q ss_pred cEEEecCcccc
Q 019479 180 DRYVSAGSIEY 190 (340)
Q Consensus 180 D~v~~~~~l~~ 190 (340)
|+++.+.....
T Consensus 105 D~lvnnAg~~~ 115 (277)
T 3gvc_A 105 DKLVANAGVVH 115 (277)
T ss_dssp CEEEECCCCCC
T ss_pred CEEEECCCCCC
Confidence 99998766543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.03 E-value=5.1 Score=30.81 Aligned_cols=96 Identities=11% Similarity=0.170 Sum_probs=56.0
Q ss_pred CCEEEEEcCccchHHHHHHHhC--CCceEEEEeCC-HHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQS-PHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAG 186 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s-~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~ 186 (340)
..+|+-+|+| ..+..+++.+ .+.+|+++|.+ ++.++...+... .++.++.+|..+.. ..-..+|+|++..
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-CCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 4578888875 4444444332 26899999997 454444433211 45788999986521 1234689888743
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.-. .....+....+.+.|..+++...
T Consensus 80 ~~d---~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 80 DND---ADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp SCH---HHHHHHHHHHHHHTSSSCEEEEC
T ss_pred CCh---HHHHHHHHHHHHHCCCCEEEEEE
Confidence 211 11244555666676777776653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.01 E-value=6.3 Score=34.35 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=53.2
Q ss_pred CCEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+|.-||+|. | .++..+++. +.+|++.|.+++.++.+.+. +......+..+. -...|+|+.. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~~e~---~~~aDvvi~~-----v 72 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE----GACGAAASAREF---AGVVDALVIL-----V 72 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----TCSEEESSSTTT---TTTCSEEEEC-----C
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc----CCccccCCHHHH---HhcCCEEEEE-----C
Confidence 46788999874 2 234444544 78999999999888877654 222224444432 2346999874 4
Q ss_pred CCHH---HHH---HHHHHhcccCcEEEEE
Q 019479 192 PDPQ---RGI---KEAYRVLKIGGKACVI 214 (340)
Q Consensus 192 ~d~~---~~l---~~~~~~LkpgG~l~i~ 214 (340)
++.. .++ +++...+++|..++-.
T Consensus 73 p~~~~~~~v~~~~~~l~~~l~~g~ivv~~ 101 (303)
T 3g0o_A 73 VNAAQVRQVLFGEDGVAHLMKPGSAVMVS 101 (303)
T ss_dssp SSHHHHHHHHC--CCCGGGSCTTCEEEEC
T ss_pred CCHHHHHHHHhChhhHHhhCCCCCEEEec
Confidence 4432 333 4556777877665433
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=86.99 E-value=4 Score=34.67 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=51.3
Q ss_pred CCCEEEEEcC-ccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-----C-----C
Q 019479 113 RNMRVVDVGG-GTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 113 ~~~~vLDiGc-G~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.+++||-.|+ |.|. .+..++++ +.+|+.+|.++...+.+.+.. ...++.++.+|+.+.. + .
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5788998887 5543 45555665 789999999987776655442 2257889999997632 0 0
Q ss_pred CCCccEEEecCccc
Q 019479 176 TDYADRYVSAGSIE 189 (340)
Q Consensus 176 ~~~fD~v~~~~~l~ 189 (340)
.+..|+++.+..+.
T Consensus 99 ~g~id~li~~Ag~~ 112 (266)
T 3o38_A 99 AGRLDVLVNNAGLG 112 (266)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCCcEEEECCCcC
Confidence 13689999876654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=9.6 Score=31.94 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=60.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCce-EEEEeCCH--HHHHHHHHhCCCCCcEEEEcCCCCC-C-----CC-----C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKN-VTILDQSP--HQLAKAKQKEPLKECTIIEGDAEDL-P-----FP-----T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~-v~g~D~s~--~~~~~a~~~~~~~~i~~~~~d~~~~-~-----~~-----~ 176 (340)
.+++||-.|++ |..+..+++.+ .+.+ |+.++.++ +.++...+.....++.++.+|+.+. . +. -
T Consensus 4 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 4 TNKNVIFVAAL-GGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 46788888865 44444444432 2565 88888875 3444444333334678889998763 1 00 1
Q ss_pred CCccEEEecCcccccCCHH-----------HHHHHHHHhccc-----CcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYWPDPQ-----------RGIKEAYRVLKI-----GGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~-----------~~l~~~~~~Lkp-----gG~l~i~~~ 216 (340)
+..|+++.+.......+++ .+++.+.+.++. +|+++.+..
T Consensus 83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 138 (254)
T 1sby_A 83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence 3689999877665555554 234445555532 577776643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.74 E-value=2.8 Score=35.74 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=62.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-----CC-----
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-----FP----- 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-----~~----- 175 (340)
.+++||-.|++.|. .+..+++. +.+|+++|.+++..+.+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 46788888876542 34444444 7899999998876655433321 235788889986532 00
Q ss_pred CCCccEEEecCcccccCCHHH-----------HHHHHHHhccc-----CcEEEEEcc
Q 019479 176 TDYADRYVSAGSIEYWPDPQR-----------GIKEAYRVLKI-----GGKACVIGP 216 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~-----------~l~~~~~~Lkp-----gG~l~i~~~ 216 (340)
-+..|+++.+.......+++. ..+.+.+.++. +|+++.+..
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 84 FGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred cCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 135799998876655555542 23445555543 577776643
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.95 E-value=15 Score=37.89 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=75.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC------------CC---CC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECTIIEGDAE------------DL---PF- 174 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~--~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~------------~~---~~- 174 (340)
...+++|+-||.|.++.-+.+. |. .+.++|+++.+++.-+.+. ++..++.+|+. +. .+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~--p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp 614 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNN--PGSTVFTEDCNILLKLVMAGETTNSRGQRLP 614 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHC--TTSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhC--CCCccccccHHHHhhhccchhhhhhhhhhcc
Confidence 4568999999999999998877 64 5779999999998888765 34455555532 11 11
Q ss_pred CCCCccEEEecCcccccC-----------CHH-HH---HHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHH
Q 019479 175 PTDYADRYVSAGSIEYWP-----------DPQ-RG---IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~-----------d~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
..+.+|+|+...-...+. |.. .+ +-++.+.++|. +++.+.+..-..... -...+.
T Consensus 615 ~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk--~~llENV~glls~~~--------~~~~~~ 684 (1002)
T 3swr_A 615 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVSFKR--------SMVLKL 684 (1002)
T ss_dssp CTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCS--EEEEEEEGGGGTTGG--------GHHHHH
T ss_pred cCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCC--EEEEeccHHHhccCc--------chHHHH
Confidence 134689999754433331 110 12 23344556663 444443322110000 012456
Q ss_pred HHHHHHHCCCcEEE
Q 019479 240 YIEWFQKAGFKDVK 253 (340)
Q Consensus 240 ~~~~l~~aGF~~v~ 253 (340)
+.+.|++.||.+..
T Consensus 685 i~~~L~~lGY~v~~ 698 (1002)
T 3swr_A 685 TLRCLVRMGYQCTF 698 (1002)
T ss_dssp HHHHHHHHTCEEEE
T ss_pred HHHHHHhcCCeEEE
Confidence 77788999998643
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.74 E-value=0.27 Score=44.29 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEE
Q 019479 111 FDRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~ 183 (340)
.+++.+||-.|+ +.|..+..+++...+.+|++++ ++...+.++ . ... .++. +-.++ ....+.+|+|+
T Consensus 140 ~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~-ga~--~~~~-~~~~~~~~~~~~~~~g~Dvv~ 213 (349)
T 4a27_A 140 LREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-D-SVT--HLFD-RNADYVQEVKRISAEGVDIVL 213 (349)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-G-GSS--EEEE-TTSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-c-CCc--EEEc-CCccHHHHHHHhcCCCceEEE
Confidence 357899999998 3578888888876567999998 566666665 2 211 1222 11111 01235699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-...- ..+..+.+.|++||++++...
T Consensus 214 d~~g~-------~~~~~~~~~l~~~G~~v~~G~ 239 (349)
T 4a27_A 214 DCLCG-------DNTGKGLSLLKPLGTYILYGS 239 (349)
T ss_dssp EECC--------------CTTEEEEEEEEEEC-
T ss_pred ECCCc-------hhHHHHHHHhhcCCEEEEECC
Confidence 64321 123678899999999998753
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.67 E-value=7.3 Score=31.96 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=55.6
Q ss_pred EEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCccc
Q 019479 116 RVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSIE 189 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 189 (340)
+|+=+|+| .++..+++.+ .+.+|+++|.+++.++...+. .++.++.+|..+.. ..-..+|+|++..
T Consensus 2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~--- 73 (218)
T 3l4b_C 2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---LKATIIHGDGSHKEILRDAEVSKNDVVVILT--- 73 (218)
T ss_dssp CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---SSSEEEESCTTSHHHHHHHTCCTTCEEEECC---
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---cCCeEEEcCCCCHHHHHhcCcccCCEEEEec---
Confidence 57778874 4554444432 368999999999988776543 24678899986522 1234689988742
Q ss_pred ccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 190 YWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 190 ~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
++.. ..+....+.+.+..+++..
T Consensus 74 --~~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 74 --PRDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp --SCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred --CCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 2332 3445555656666666554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.60 E-value=3 Score=35.47 Aligned_cols=102 Identities=11% Similarity=-0.009 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCc-cchH----HHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCCcEEEEcCCCCCC-----C-----C
Q 019479 112 DRNMRVVDVGGG-TGFT----TLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~----~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-~~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.++++||-.|++ +|.. +..++++ +.+|+.++.+....+.+++. ....++.++.+|+.+.. + .
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHc--CCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 368899999975 2333 3444444 78999999876544444332 11234788899997632 0 1
Q ss_pred CCCccEEEecCccccc----------CCHH--------------HHHHHHHHhcccCcEEEEEc
Q 019479 176 TDYADRYVSAGSIEYW----------PDPQ--------------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~----------~d~~--------------~~l~~~~~~LkpgG~l~i~~ 215 (340)
-+..|+++.+..+... .+.+ .+++.+.+.++++|+++.+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1468999987655331 1111 34556666777788887764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=85.57 E-value=6.8 Score=33.90 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=62.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHH-HHHHHHh--CCCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQ-LAKAKQK--EPLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~--~~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.+++||-.|++.|. .+..++++ +.+|+.+|.++.. .+...+. ....++.++.+|+.+.. + .-
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57889988876653 34445554 7899999987642 3333222 22356888999997632 0 01
Q ss_pred CCccEEEecCccccc-C-----CH---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYW-P-----DP---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~-~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+-..... . +. + .+++.+.+.++.+|+++.+..
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 368999977543321 1 11 1 345667777888898877643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.49 E-value=3.7 Score=35.77 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=51.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~~ 177 (340)
.+++||-.|++.|. .+..++++ +.+|+++|.++..++.+.+.. ...++.++..|+.+.. + ..+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 57889988887652 34455554 789999999988777665442 2346888999997632 0 013
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
..|+++.+..+.
T Consensus 108 ~id~lvnnAg~~ 119 (301)
T 3tjr_A 108 GVDVVFSNAGIV 119 (301)
T ss_dssp SCSEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 689999876654
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=85.25 E-value=4 Score=34.82 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC----------C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP----------T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~----------~ 176 (340)
.+++||-.|++.|. .+..++++ +.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.... -
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788877776552 34444544 789999999987776655432 135688899999764310 1
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
+..|+++.+-...
T Consensus 97 g~id~lv~nAg~~ 109 (266)
T 4egf_A 97 GGLDVLVNNAGIS 109 (266)
T ss_dssp TSCSEEEEECCCC
T ss_pred CCCCEEEECCCcC
Confidence 3689999876544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.11 E-value=4 Score=34.92 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~~ 177 (340)
.++++|--|++.|. .+..+++. |.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. -.-+
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 67888888877663 34555555 899999999998776665432 2246778888886521 1235
Q ss_pred CccEEEecCcccc
Q 019479 178 YADRYVSAGSIEY 190 (340)
Q Consensus 178 ~fD~v~~~~~l~~ 190 (340)
..|+++.+-.+..
T Consensus 86 ~iDiLVNNAG~~~ 98 (255)
T 4g81_D 86 HVDILINNAGIQY 98 (255)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCcEEEECCCCCC
Confidence 7899998765543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.05 E-value=4 Score=34.69 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=64.6
Q ss_pred CCCEEEEEcCc----cch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC----------C
Q 019479 113 RNMRVVDVGGG----TGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP----------F 174 (340)
Q Consensus 113 ~~~~vLDiGcG----~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~----------~ 174 (340)
+++++|--|++ -|. .+..+++. |.+|+.+|.+++..+.+.+. ....++.++..|+.+.. -
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 68899999853 343 45666666 89999999998777666544 23356888899986521 0
Q ss_pred CCCCccEEEecCcccccC---------CHH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 175 PTDYADRYVSAGSIEYWP---------DPQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~---------d~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.-+..|+++.+-.+.... +.+ ...+.+...++.+|.++.+..
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 125689888765442211 111 122344566788899877643
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.81 E-value=3.6 Score=34.39 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=49.2
Q ss_pred CCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCcc
Q 019479 114 NMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYAD 180 (340)
Q Consensus 114 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~fD 180 (340)
++++|-.|++.|. .+..++++ +.+|+.+|.+++.++...+... .++.++.+|+.+.. + ..+..|
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVER--GHQVSMMGRRYQRLQQQELLLG-NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4678888876653 34445554 7899999999987776665443 35888999986532 0 013689
Q ss_pred EEEecCccc
Q 019479 181 RYVSAGSIE 189 (340)
Q Consensus 181 ~v~~~~~l~ 189 (340)
+++.+....
T Consensus 80 ~lvnnAg~~ 88 (235)
T 3l6e_A 80 LVLHCAGTG 88 (235)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 998876553
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.80 E-value=4.9 Score=34.28 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=63.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS-PHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.++++|-.|++.|. .+..+++. +.+|+.++.. ....+...+.. ...++.++.+|+.+.. + .-
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRL--GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57788888876653 34445554 7899987763 44444333221 2356888999997632 0 01
Q ss_pred CCccEEEecCcccccC-----CH---H-----------HHHHHHHHhcccCcEEEEEccC
Q 019479 177 DYADRYVSAGSIEYWP-----DP---Q-----------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+..|+++.+....... +. + .+.+.+.+.++++|+++.+...
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 154 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN 154 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 3689999776554321 11 1 3456777888889998887543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=7.4 Score=34.27 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=58.2
Q ss_pred CCEEEEEcCcc--chHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 114 NMRVVDVGGGT--GFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 114 ~~~vLDiGcG~--G~~~~~l~~~~~~~--~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
..+|.=||+|. +.++..+++. +. +|+++|.+++.++.+.+... +.-...|..+. .-...|+|+..--..
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~G~---~~~~~~~~~~~--~~~~aDvVilavp~~ 105 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAKV--EDFSPDFVMLSSPVR 105 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS---CSEEESCTTGG--GGGCCSEEEECSCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHCCC---cchhcCCHHHH--hhccCCEEEEeCCHH
Confidence 36899999884 3345555554 55 89999999998888875421 11123343320 123479999864433
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+++++...+++|..++-.
T Consensus 106 ---~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 106 ---TFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp ---GHHHHHHHHHHHSCTTCEEEEC
T ss_pred ---HHHHHHHHHhhccCCCcEEEEC
Confidence 3357888999999988766543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.36 E-value=6.4 Score=34.22 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=54.1
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+++|+=||+|. |......+..+ +.+|+++|.++...+.+.+. +++... .++.+. -...|+|+.....+.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~~~~~~----g~~~~~~~~l~~~---l~~aDvVi~~~p~~~ 225 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-GAKVKVGARESDLLARIAEM----GMEPFHISKAAQE---LRDVDVCINTIPALV 225 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----TSEEEEGGGHHHH---TTTCSEEEECCSSCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHC----CCeecChhhHHHH---hcCCCEEEECCChHH
Confidence 688999999874 44444444444 57999999998766555431 233321 122211 235899998765543
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+ +. +..+.+|||+.++-..
T Consensus 226 i-~~-----~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 226 V-TA-----NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp B-CH-----HHHHHSCTTCEEEECS
T ss_pred h-CH-----HHHHhcCCCCEEEEec
Confidence 3 22 3455789998776543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.35 E-value=3.8 Score=34.68 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----CC----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----FP----TDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~----~~~ 178 (340)
.++++|-.|++.|. .+..+++. +.+|+++|.+++.++.+.+.. ...++.++.+|+.+.. +. .+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 56788888887663 44555555 789999999887766555432 1346888999996632 00 046
Q ss_pred ccEEEecCccc
Q 019479 179 ADRYVSAGSIE 189 (340)
Q Consensus 179 fD~v~~~~~l~ 189 (340)
.|+++.+....
T Consensus 84 id~lv~nAg~~ 94 (252)
T 3h7a_A 84 LEVTIFNVGAN 94 (252)
T ss_dssp EEEEEECCCCC
T ss_pred ceEEEECCCcC
Confidence 89999876653
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=84.08 E-value=7.3 Score=33.06 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCC-----C-----C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+.+.+. ....++.++.+|+.+.. + .
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 57888888887653 34555555 78999999998776665543 22345888899997632 0 0
Q ss_pred CCCccEEEecCccc
Q 019479 176 TDYADRYVSAGSIE 189 (340)
Q Consensus 176 ~~~fD~v~~~~~l~ 189 (340)
-+..|+++.+....
T Consensus 85 ~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 85 LGCASILVNNAGQG 98 (265)
T ss_dssp HCSCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 14689999876654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=2 Score=36.40 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=61.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----CC-----CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----FP-----TD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~-----~~ 177 (340)
++++||-.|+ +|..+..+++.+ .+.+|++++.++...+...+.. ...++.++.+|+.+.. +. .+
T Consensus 3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4677876665 455554444432 2689999999876655544332 1246888999987632 00 12
Q ss_pred CccEEEecCccccc--------CCHH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 178 YADRYVSAGSIEYW--------PDPQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 178 ~fD~v~~~~~l~~~--------~d~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+|+|+.+...... .+.+ .+++.+.+.++++|+++.+..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 68999876544321 1111 345566667777788877643
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.01 E-value=5.2 Score=34.38 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CC-----CCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FP-----TDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~-----~~~f 179 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+...+... .++.++.+|+.+.. +. -+..
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKN--GAYVVVADVNEDAAVRVANEIG-SKAFGVRVDVSSAKDAESMVEKTTAKWGRV 102 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHC-TTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57788888876653 34445554 7899999999887766655432 46788889986532 00 1368
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 103 D~lv~nAg~~ 112 (277)
T 4dqx_A 103 DVLVNNAGFG 112 (277)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCcC
Confidence 9999876653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=3.9 Score=35.55 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=62.7
Q ss_pred CCCEEEEEcCcc----ch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGT----GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~----G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.++++|-.|++. |. .+..+++. +.+|+.+|.++...+.+.+.. ...++.++.+|+.+.. + .-
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW 106 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578899999753 32 45555555 789999999875544433221 1134678889986632 0 01
Q ss_pred CCccEEEecCccccc---------CCH---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYW---------PDP---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~---------~d~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+..+... .+. . .+.+.+.+.++.+|+++.+..
T Consensus 107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 468999987655421 111 1 345566677778898887643
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=0.76 Score=42.59 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=34.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCC-----CceEEEEeCCHHHHHHHHHh
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVD-----AKNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~ 156 (340)
..+|+|+|.|+|.++..+++... ..+++.||+|+...+.-+++
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~ 185 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRET 185 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHH
Confidence 47999999999999988876531 24899999999877666554
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.50 E-value=13 Score=32.03 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC-C----C------C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL-P----F------P 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~-~----~------~ 175 (340)
.+++||-.|++.|. .+..++++ +.+|++++.++...+.+.+.. ...++.++..|+.+. . + .
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 56788877876552 34444444 789999999987766554432 224688999999764 2 0 0
Q ss_pred CCCccEEEecCccc
Q 019479 176 TDYADRYVSAGSIE 189 (340)
Q Consensus 176 ~~~fD~v~~~~~l~ 189 (340)
.+..|+++.+-.+.
T Consensus 89 ~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 89 FGKLDILVNNAGVA 102 (311)
T ss_dssp HSSCCEEEECCCCC
T ss_pred CCCCCEEEECCccc
Confidence 14689999877654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=83.24 E-value=4.8 Score=34.56 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCC---------CCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPF---------PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~---------~~~~ 178 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+.+.+.. ...++.++.+|+.+... ..+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGA--GAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56788877776552 34444554 789999999876655544332 23568889999976430 0146
Q ss_pred ccEEEecCccc
Q 019479 179 ADRYVSAGSIE 189 (340)
Q Consensus 179 fD~v~~~~~l~ 189 (340)
.|+++.+....
T Consensus 110 iD~lvnnAg~~ 120 (275)
T 4imr_A 110 VDILVINASAQ 120 (275)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999876653
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.06 E-value=3.1 Score=37.12 Aligned_cols=92 Identities=12% Similarity=0.117 Sum_probs=58.7
Q ss_pred CCEEEEE-cC-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-CCCCccEEEec
Q 019479 114 NMRVVDV-GG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-PTDYADRYVSA 185 (340)
Q Consensus 114 ~~~vLDi-Gc-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD~v~~~ 185 (340)
+.+||-. |+ |.|..+..+++.. +.+|+++|.+++..+.+++.... .++..+-.++. . ....+|+|+-.
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~---~~~~~~~~~~~~~v~~~~~~~g~D~vid~ 240 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDIGAA---HVLNEKAPDFEATLREVMKAEQPRIFLDA 240 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHHTCS---EEEETTSTTHHHHHHHHHHHHCCCEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCC---EEEECCcHHHHHHHHHHhcCCCCcEEEEC
Confidence 3566654 44 3577778888875 67999999999999998865321 12221111110 0 11359999864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..- ..+..+.+.|+++|++++...
T Consensus 241 ~g~-------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 241 VTG-------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp SCH-------HHHHHHHHHSCTTCEEEECCC
T ss_pred CCC-------hhHHHHHhhhcCCCEEEEEec
Confidence 332 234778899999999988753
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.96 E-value=7.7 Score=33.20 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=49.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeC-------------CHHHHHHHHHh--CCCCCcEEEEcCCCCCC-
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQ-------------SPHQLAKAKQK--EPLKECTIIEGDAEDLP- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-------------s~~~~~~a~~~--~~~~~i~~~~~d~~~~~- 173 (340)
.++++|-.|++.|. .+..++++ +.+|+++|. +++.++.+.+. ....++.++..|+.+..
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 57888888887653 34555555 789999997 56655554433 22356788889986532
Q ss_pred ----C-----CCCCccEEEecCcccc
Q 019479 174 ----F-----PTDYADRYVSAGSIEY 190 (340)
Q Consensus 174 ----~-----~~~~fD~v~~~~~l~~ 190 (340)
+ .-+..|+++.+.....
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 0 0136899998766543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.95 E-value=4.3 Score=35.74 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=50.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCC-----C-----C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.+++||-.|++.|. .+..++++ +.+|++++.++...+.+.+.. ...++.++..|+.+.. + .
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789988887653 34444554 789999999988776655432 1236888999996632 0 1
Q ss_pred CCCccEEEecCccc
Q 019479 176 TDYADRYVSAGSIE 189 (340)
Q Consensus 176 ~~~fD~v~~~~~l~ 189 (340)
.+..|+++.+..+.
T Consensus 85 ~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 85 FGPVSILCNNAGVN 98 (319)
T ss_dssp TCCEEEEEECCCCC
T ss_pred CCCCCEEEECCCcC
Confidence 14689999876654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=82.49 E-value=3.4 Score=34.81 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=50.6
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.+++..+...+.. ..++.++.+|+.+.. + ..+..
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAAD--GATVIVSDINAEGAKAAAASI-GKKARAIAADISDPGSVKALFAEIQALTGGI 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-CTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 57889888876653 34455555 789999999998777665544 256788888986532 0 01368
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 82 d~lv~nAg~~ 91 (247)
T 3rwb_A 82 DILVNNASIV 91 (247)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999876654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=82.42 E-value=7.2 Score=36.05 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
-.+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. .+.+ ..++++. -...|+|+....-.+
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp~ra~~A~~----~G~~--v~~Leea---l~~ADIVi~atgt~~ 287 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDPICALQACM----DGFR--LVKLNEV---IRQVDIVITCTGNKN 287 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCE--ECCHHHH---TTTCSEEEECSSCSC
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCChhhhHHHHH----cCCE--eccHHHH---HhcCCEEEECCCCcc
Confidence 3789999999995 55555555554 7899999999865554542 1222 2333321 234799998533233
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+-+ .+..+.+|+|+.++-+.
T Consensus 288 lI~-----~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 288 VVT-----REHLDRMKNSCIVCNMG 307 (435)
T ss_dssp SBC-----HHHHHHSCTTEEEEECS
T ss_pred cCC-----HHHHHhcCCCcEEEEec
Confidence 222 36678899998776553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=82.37 E-value=11 Score=31.33 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=59.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~ 186 (340)
...+|+=+|+ |..+..+++.+- +. |+++|.+++.++.++ .++.++.+|..+.. ..-..+|+|++..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 3468988988 566666666652 45 999999998877765 35788999986521 2234689888742
Q ss_pred cccccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
++.. .......+.+.|+..++...
T Consensus 80 -----~~d~~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 80 -----ESDSETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp -----SCHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred -----CCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence 2332 34445666778877776654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.35 E-value=7 Score=33.43 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS-PHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.. ....+...+.. ...++.++.+|+.+.. + .-
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALE--GAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57889988887653 34555555 7899988654 34333333221 1356788899986532 0 01
Q ss_pred CCccEEEecCcccccC-----C---HH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYWP-----D---PQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~-----d---~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+-.+.... + ++ .+++.+.+.++++|+++.+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3689999876553321 1 11 345667778888898887743
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.33 E-value=10 Score=31.54 Aligned_cols=75 Identities=12% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~~ 177 (340)
.++++|-.|++.|. .+..++++ +.+|++++.++...+...+.. ...++.++..|+.+.. ...+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888876552 34455554 789999999987776655432 1246888999986532 1124
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
..|+++.+....
T Consensus 82 ~id~li~~Ag~~ 93 (247)
T 3lyl_A 82 AIDILVNNAGIT 93 (247)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876554
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=82.19 E-value=1.6 Score=34.31 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCC----CCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPF----PTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~----~~~~fD~v~~~~~ 187 (340)
-..-|||+|-|+|..-..+.+.+|+.+++++|-.-..-- -...+.-.++.+|+.+ ++. -..+.-++.....
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp----~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G 115 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP----DSTPPEAQLILGDIRETLPATLERFGATASLVHADLG 115 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG----GGCCCGGGEEESCHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCC----CCCCchHheecccHHHHHHHHHHhcCCceEEEEeecC
Confidence 345799999999999999999999999999997210000 0011234578888855 231 1334445555444
Q ss_pred ccccCCHHHH----HHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRG----IKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~----l~~~~~~LkpgG~l~i~~~~ 217 (340)
.++-+..... =.-+..+|.|||.++-..+.
T Consensus 116 ~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 116 GHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 4432222222 23456788999988655443
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=82.13 E-value=15 Score=31.14 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=48.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCH--HHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~--~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v 182 (340)
.++++|--|++.|. .+..|++. +.+|+..|.+. +..+..++. ..++.++..|+.+.. +..+..|++
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL 83 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAA--GAEVVCAARRAPDETLDIIAKD--GGNASALLIDFADPLAAKDSFTDAGFDIL 83 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCCHHHHHHHHHT--TCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHc--CCEEEEEeCCcHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 67888888877764 45556665 89999999864 333333332 246778888886522 345679999
Q ss_pred EecCccc
Q 019479 183 VSAGSIE 189 (340)
Q Consensus 183 ~~~~~l~ 189 (340)
+.+-.+.
T Consensus 84 VNNAGi~ 90 (247)
T 4hp8_A 84 VNNAGII 90 (247)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9876554
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.97 E-value=4.6 Score=34.54 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC------------HHHHHHHHHhC--CCCCcEEEEcCCCCCC--
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS------------PHQLAKAKQKE--PLKECTIIEGDAEDLP-- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~--~~~~i~~~~~d~~~~~-- 173 (340)
.++++|-.|++.|. .+..++++ +.+|+++|.+ ++.++...+.. ...++.++.+|+.+..
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 57889988876652 44555555 7899999986 44444433221 1256888999997632
Q ss_pred ---CC-----CCCccEEEecCcccccCC----HH-----------HHHHHHHHhcc---cCcEEEEEcc
Q 019479 174 ---FP-----TDYADRYVSAGSIEYWPD----PQ-----------RGIKEAYRVLK---IGGKACVIGP 216 (340)
Q Consensus 174 ---~~-----~~~fD~v~~~~~l~~~~d----~~-----------~~l~~~~~~Lk---pgG~l~i~~~ 216 (340)
+. -+..|+++.+..+..... ++ .+++.+.+.++ .+|+++.+..
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 158 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS 158 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 00 136899998776654321 11 23444555453 3688877653
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.84 E-value=7.1 Score=33.36 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeC-------------CHHHHHHHHHh--CCCCCcEEEEcCCCCCC-
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQ-------------SPHQLAKAKQK--EPLKECTIIEGDAEDLP- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~-------------s~~~~~~a~~~--~~~~~i~~~~~d~~~~~- 173 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|. +++.++...+. ....++.++..|+.+..
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 57889888887653 44555555 789999998 55555444332 12356788899987632
Q ss_pred ----CC-----CCCccEEEecCcccc
Q 019479 174 ----FP-----TDYADRYVSAGSIEY 190 (340)
Q Consensus 174 ----~~-----~~~fD~v~~~~~l~~ 190 (340)
+. -+..|+++.+..+..
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 00 146899998766543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=81.66 E-value=8.9 Score=28.57 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=50.9
Q ss_pred CCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~ 187 (340)
..+|+-+|+| ..+..+++.+ .+.+|+++|.+++.++.+++ ....++.+|..+.. .....+|+|+....
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 79 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YATHAVIANATEENELLSLGIRNFEYVIVAIG 79 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----TCSEEEECCTTCHHHHHTTTGGGCSEEEECCC
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCCEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 4579999985 4444433322 26789999998876554432 23456777765421 11245899887533
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
-. . +....+....+.+.+. +++..
T Consensus 80 ~~-~-~~~~~~~~~~~~~~~~-~ii~~ 103 (144)
T 2hmt_A 80 AN-I-QASTLTTLLLKELDIP-NIWVK 103 (144)
T ss_dssp SC-H-HHHHHHHHHHHHTTCS-EEEEE
T ss_pred Cc-h-HHHHHHHHHHHHcCCC-eEEEE
Confidence 21 0 1122344455556665 65544
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.65 E-value=5.5 Score=34.76 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+++|+-||+|. |......+..+ +.+|+++|.++...+.+.+. +++... .++.++ -...|+|+.....+.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~~~~~~----g~~~~~~~~l~~~---l~~aDvVi~~~p~~~ 227 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL-GANVKVGARSSAHLARITEM----GLVPFHTDELKEH---VKDIDICINTIPSMI 227 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----TCEEEEGGGHHHH---STTCSEEEECCSSCC
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CCeEEchhhHHHH---hhCCCEEEECCChhh
Confidence 688999999974 44444444444 67999999998766554431 233221 222221 245899998766644
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+ + ++..+.+|||+.++-+.
T Consensus 228 i-~-----~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 228 L-N-----QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp B-C-----HHHHTTSCTTCEEEECS
T ss_pred h-C-----HHHHHhCCCCCEEEEEe
Confidence 3 2 23457789988775543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.63 E-value=6.2 Score=33.41 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEE-eCCHHHHHHHHHh--CCCCCcEEEEcCCCCCC-----C-----CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTIL-DQSPHQLAKAKQK--EPLKECTIIEGDAEDLP-----F-----PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~--~~~~~i~~~~~d~~~~~-----~-----~~ 176 (340)
.++++|-.|++.|. .+..++++ +.+|+.+ +.++...+.+.+. ....++.++.+|+.+.. + .-
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 57889988887653 34555555 7889888 6555554444332 22356888999997632 0 01
Q ss_pred CCccEEEecCccc-c---cC--CH---H-----------HHHHHHHHhcccCcEEEEEc
Q 019479 177 DYADRYVSAGSIE-Y---WP--DP---Q-----------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~~~~~l~-~---~~--d~---~-----------~~l~~~~~~LkpgG~l~i~~ 215 (340)
+..|+++.+.... . +. +. + .+.+.+.+.++++|+++.+.
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3689998765433 1 11 11 1 34556666777788887764
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=81.58 E-value=9.7 Score=32.85 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=37.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEe-CCHHHHHHHHHhC---CCCCcEEEEcCCCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILD-QSPHQLAKAKQKE---PLKECTIIEGDAEDL 172 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D-~s~~~~~~a~~~~---~~~~i~~~~~d~~~~ 172 (340)
.++++|-.|++.| .+..+++.+ .+.+|+.+| .+++.++.+.+.. ...++.++..|+.+.
T Consensus 8 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 8 TVPVALVTGAAKR-LGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp CCCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 4567877776554 333333332 278999999 8887666554332 124688889998764
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=81.47 E-value=3.7 Score=35.00 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCEEEEEcC-ccchHHHHHHHhC--CCceEEEEeCCHHH-HHHHHHhCCCCCcEEEEcCCCCCC-----CC-----CC-
Q 019479 113 RNMRVVDVGG-GTGFTTLGIVKHV--DAKNVTILDQSPHQ-LAKAKQKEPLKECTIIEGDAEDLP-----FP-----TD- 177 (340)
Q Consensus 113 ~~~~vLDiGc-G~G~~~~~l~~~~--~~~~v~g~D~s~~~-~~~a~~~~~~~~i~~~~~d~~~~~-----~~-----~~- 177 (340)
.++++|-.|+ |+|..+..+++.+ .+.+|+.+|.++.. ++...+... .++.++.+|+.+.. +. -+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 84 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLP-AKAPLLELDVQNEEHLASLAGRVTEAIGA 84 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSS-SCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcC-CCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4678998997 3554444444432 27899999987654 344443332 35778889986532 00 12
Q ss_pred --CccEEEecCcccc--------c--CCHH--------------HHHHHHHHhcccCcEEEEEc
Q 019479 178 --YADRYVSAGSIEY--------W--PDPQ--------------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 --~fD~v~~~~~l~~--------~--~d~~--------------~~l~~~~~~LkpgG~l~i~~ 215 (340)
..|+++.+..... + .+.+ .+.+.+.+.++++|+++.+.
T Consensus 85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 6899998765432 1 1111 23455666677778887764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=81.38 E-value=4.3 Score=34.92 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~~ 177 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+...+.. ...++.++.+|+.+.. + .-+
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57889888877653 34455555 789999999887666554432 2246788999997632 0 013
Q ss_pred CccEEEecCcccc
Q 019479 178 YADRYVSAGSIEY 190 (340)
Q Consensus 178 ~fD~v~~~~~l~~ 190 (340)
..|+++.+.....
T Consensus 109 ~iD~lvnnAg~~~ 121 (276)
T 3r1i_A 109 GIDIAVCNAGIVS 121 (276)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6899998766543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=81.38 E-value=5.2 Score=33.66 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=49.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+++|.+++..+...+... .+..++..|+.+.. + .-+..
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAER--GAKVIGTATSESGAQAISDYLG-DNGKGMALNVTNPESIEAVLKAITDEFGGV 84 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-ccceEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888876652 34445554 7899999999887776654432 34677888886632 0 01368
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+-.+.
T Consensus 85 D~lv~nAg~~ 94 (248)
T 3op4_A 85 DILVNNAGIT 94 (248)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999876554
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=81.25 E-value=2.3 Score=38.12 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEE-EeCCH---HHHHHHHHhCCCCCcEEEE------cCCCCCCCCCCCc
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTI-LDQSP---HQLAKAKQKEPLKECTIIE------GDAEDLPFPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g-~D~s~---~~~~~a~~~~~~~~i~~~~------~d~~~~~~~~~~f 179 (340)
+++.+||-+|+ |.|..+..+++.. ++++++ ++.++ +..+.+++. .... ++. .++.+..-..+.+
T Consensus 166 ~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~l-Ga~~--vi~~~~~~~~~~~~~~~~~~~~ 241 (357)
T 1zsy_A 166 QPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKSL-GAEH--VITEEELRRPEMKNFFKDMPQP 241 (357)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHHT-TCSE--EEEHHHHHSGGGGGTTSSSCCC
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHhc-CCcE--EEecCcchHHHHHHHHhCCCCc
Confidence 57899999996 5788999999886 565554 44433 235566543 2121 111 1121111111248
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
|+|+-.-. .. ...++.+.|++||++++..
T Consensus 242 Dvvid~~g------~~-~~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 242 RLALNCVG------GK-SSTELLRQLARGGTMVTYG 270 (357)
T ss_dssp SEEEESSC------HH-HHHHHHTTSCTTCEEEECC
T ss_pred eEEEECCC------cH-HHHHHHHhhCCCCEEEEEe
Confidence 99885322 12 2345789999999998874
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.12 E-value=3.1 Score=35.37 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeC-CHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----CC-----CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQ-SPHQLAKAKQKE--PLKECTIIEGDAEDLP-----FP-----TD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~-s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~-----~~ 177 (340)
.+++||-.|++ |..+..+++.+ .+.+|++++. ++...+...+.. ...++.++.+|+.+.. +. -+
T Consensus 20 ~~k~vlItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 98 (274)
T 1ja9_A 20 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 98 (274)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788877654 44444444432 2789999998 766555443321 1246788899987532 00 12
Q ss_pred CccEEEecCcccccC-----CH---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 178 YADRYVSAGSIEYWP-----DP---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..|+++.+....... +. + .+++.+.+.++.+|+++.+..
T Consensus 99 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS 156 (274)
T 1ja9_A 99 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 156 (274)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence 689998765543221 11 1 233444555655688877643
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=81.12 E-value=10 Score=34.80 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=34.1
Q ss_pred CCEEEEEcCccchHHHHHHHhCCC---ce----EEEEeCCHHHHHHHHHhC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDA---KN----VTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~---~~----v~g~D~s~~~~~~a~~~~ 157 (340)
..+|+|+-||.|.....+.+. + .. |.++|+++.+++.-+.+.
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~a--G~~~~~~~~~v~avEid~~A~~ty~~n~ 58 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNI--ARSKNWEIQHSGMVEWFVDAIVSYVAIH 58 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHH--HHHHTEEEEEEEEECCBHHHHHHHHHHH
T ss_pred cceEEEEecCcCHHHHHHHHh--CCccccceeeEEEEecCHHHHHHHHHHc
Confidence 458999999999999988776 3 22 778999999988877663
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=81.07 E-value=5.8 Score=34.41 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCH--HHHHHHHHh--CCCCCcEEEEcCCCCCC-----C-----C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSP--HQLAKAKQK--EPLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~--~~~~~a~~~--~~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.+. ...+...+. ....++.++.+|+.+.. + .
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 57889988876653 34445554 78999998862 233333222 12256788888986532 0 0
Q ss_pred CCCccEEEecCcccc-cC-----CH---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 176 TDYADRYVSAGSIEY-WP-----DP---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~-~~-----d~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+..|+++.+..... .. +. + .+++.+.+.++.+|+++.+..
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 146899998766532 11 11 1 345666777888899887753
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.99 E-value=6.4 Score=33.60 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~~ 177 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. + .-+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVA--GAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35778878876553 34444554 789999999988776665432 1245778888986532 0 013
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
..|+++.+..+.
T Consensus 81 ~iD~lVnnAG~~ 92 (264)
T 3tfo_A 81 RIDVLVNNAGVM 92 (264)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689999876554
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=80.91 E-value=13 Score=31.45 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhC--CCceEEEEeCCH---HHHHHHHHhCCCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHV--DAKNVTILDQSP---HQLAKAKQKEPLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~~v~g~D~s~---~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~ 176 (340)
.+++||-.|++. |..+..+++.+ .+.+|+.+|.++ +.++...+.. .+..++.+|+.+.. -.-
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL--GSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT--TCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc--CCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467888888751 33443333322 278999999876 3333333222 23467888886521 112
Q ss_pred CCccEEEecCccccc----------CCHH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYW----------PDPQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~----------~d~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+...... .+.+ .+++.+.+.++++|+++.+..
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 149 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 149 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence 368999987655331 1111 234455566666788877643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.74 E-value=2.3 Score=36.38 Aligned_cols=78 Identities=13% Similarity=0.048 Sum_probs=46.3
Q ss_pred EEEEcCCCC-C-CCCCCCccEEEecCccccc----C----------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH
Q 019479 163 TIIEGDAED-L-PFPTDYADRYVSAGSIEYW----P----------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226 (340)
Q Consensus 163 ~~~~~d~~~-~-~~~~~~fD~v~~~~~l~~~----~----------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 226 (340)
+++++|..+ + .+++++||+|++.--...- + -....++++.++|+|||.+++... +.
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~---d~----- 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT---PF----- 77 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---HH-----
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcC---cH-----
Confidence 456666532 1 1345678888774332211 0 123678889999999999988731 11
Q ss_pred hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 227 FADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....+...+.+.||........
T Consensus 78 ---------~~~~~~~~~~~~gf~~~~~iiW 99 (260)
T 1g60_A 78 ---------NCAFICQYLVSKGMIFQNWITW 99 (260)
T ss_dssp ---------HHHHHHHHHHHTTCEEEEEEEE
T ss_pred ---------HHHHHHHHHHhhccceeEEEEE
Confidence 0123556788899986654443
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=80.73 E-value=0.97 Score=40.75 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCC-CEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHH----HHHHHHhCCCCCcEEEE------cCCCC-CC-C--
Q 019479 112 DRN-MRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQ----LAKAKQKEPLKECTIIE------GDAED-LP-F-- 174 (340)
Q Consensus 112 ~~~-~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~----~~~a~~~~~~~~i~~~~------~d~~~-~~-~-- 174 (340)
+++ .+||-+|+ |.|..+..+++.. +.+++++.-++.. .+.+++.-. .. ++. .|+.+ +. .
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa-~~--vi~~~~~~~~~~~~~i~~~t~ 240 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGA-TQ--VITEDQNNSREFGPTIKEWIK 240 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTC-SE--EEEHHHHHCGGGHHHHHHHHH
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCC-eE--EEecCccchHHHHHHHHHHhh
Confidence 477 99999986 4688888888875 6788887654432 455544321 11 111 12111 10 1
Q ss_pred -CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 175 -PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 175 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+|+|+-.-. ..... .+.+.|+++|++++...
T Consensus 241 ~~~~g~Dvvid~~G------~~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 241 QSGGEAKLALNCVG------GKSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp HHTCCEEEEEESSC------HHHHH-HHHHTSCTTCEEEECCC
T ss_pred ccCCCceEEEECCC------chhHH-HHHHHhccCCEEEEecC
Confidence 1346999985432 22233 67899999999988753
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=80.70 E-value=10 Score=32.48 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=48.8
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC----------------HHHHHHHHHh--CCCCCcEEEEcCCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS----------------PHQLAKAKQK--EPLKECTIIEGDAED 171 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s----------------~~~~~~a~~~--~~~~~i~~~~~d~~~ 171 (340)
.++++|-.|++.|. .+..+++. +.+|+++|.+ ++.++...+. ....++.++..|+.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 57889988887663 44555555 7899999987 5555444332 223568888999965
Q ss_pred CC----C------CCCCccEEEecCccc
Q 019479 172 LP----F------PTDYADRYVSAGSIE 189 (340)
Q Consensus 172 ~~----~------~~~~fD~v~~~~~l~ 189 (340)
.. + .-+..|+++.+..+.
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 32 0 013689999876653
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=80.68 E-value=6.7 Score=36.45 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
-.+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. .++++ .++++. -...|+|+....-.+
T Consensus 245 L~GKTVgVIG~G~IGr~vA~~lraf-Ga~Viv~d~dp~~a~~A~~----~G~~v--v~LeEl---L~~ADIVv~atgt~~ 314 (464)
T 3n58_A 245 MAGKVAVVCGYGDVGKGSAQSLAGA-GARVKVTEVDPICALQAAM----DGFEV--VTLDDA---ASTADIVVTTTGNKD 314 (464)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHH----TTCEE--CCHHHH---GGGCSEEEECCSSSS
T ss_pred ccCCEEEEECcCHHHHHHHHHHHHC-CCEEEEEeCCcchhhHHHh----cCcee--ccHHHH---HhhCCEEEECCCCcc
Confidence 4789999999985 55555555555 7899999998865444432 22332 233321 134799887533233
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+- -++..+.+|+|+.|+-+.
T Consensus 315 lI-----~~e~l~~MK~GAILINvG 334 (464)
T 3n58_A 315 VI-----TIDHMRKMKDMCIVGNIG 334 (464)
T ss_dssp SB-----CHHHHHHSCTTEEEEECS
T ss_pred cc-----CHHHHhcCCCCeEEEEcC
Confidence 32 256778889998876543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.64 E-value=20 Score=29.54 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-CCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-PTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD~v~~ 184 (340)
.+++||-.|++. ..+..+++.+ .+.+|+++|.++...+...+.. .+++++.+|+.+.. + ..+..|+|+.
T Consensus 6 ~~~~vlVTGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 82 (244)
T 1cyd_A 6 SGLRALVTGAGK-GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC--PGIEPVCVDLGDWDATEKALGGIGPVDLLVN 82 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--cCCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence 467888777644 4443333332 3789999999887666554432 35677888886521 1 1245899998
Q ss_pred cCccc
Q 019479 185 AGSIE 189 (340)
Q Consensus 185 ~~~l~ 189 (340)
+....
T Consensus 83 ~Ag~~ 87 (244)
T 1cyd_A 83 NAALV 87 (244)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.23 E-value=1.3 Score=33.88 Aligned_cols=41 Identities=12% Similarity=-0.057 Sum_probs=30.5
Q ss_pred CCCCCCccEEEecCccc-c-cCCHHHHHHHHHHhcccCcEEEE
Q 019479 173 PFPTDYADRYVSAGSIE-Y-WPDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~-~-~~d~~~~l~~~~~~LkpgG~l~i 213 (340)
.++..+||.|+.-.--. . ..=+..++..+.+.|||||+|..
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 45788999998743322 1 22337899999999999999975
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.16 E-value=4.5 Score=34.36 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC----------CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF----------PT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~----------~~ 176 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.+++..+.+.+.. ...++.++.+|+.+... .-
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 56788877766542 34444444 789999999988776655432 22468889999976320 01
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
+..|+++.+....
T Consensus 87 g~id~lvnnAg~~ 99 (262)
T 3pk0_A 87 GGIDVVCANAGVF 99 (262)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689999876543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=80.05 E-value=11 Score=32.07 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=47.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCC------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLP------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~------~~~~~f 179 (340)
.++++|-.|++.|. .+..+++. +.+|+.+|.+++..+...+. .....+.++..|+.+.. -.-+..
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 56788888876542 34444554 78999999998766554433 22345677888886521 012468
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 87 d~lv~nAg~~ 96 (267)
T 3t4x_A 87 DILINNLGIF 96 (267)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 340 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 8e-16 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-14 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 9e-14 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-13 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-13 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 7e-13 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-11 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-11 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-11 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 3e-10 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 5e-10 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-09 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 4e-09 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 6e-09 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 6e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-09 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-08 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 1e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-07 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-07 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 4e-07 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 5e-07 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 6e-07 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 6e-07 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 7e-07 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 7e-07 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-06 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-06 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 2e-06 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-06 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 7e-06 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 2e-05 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-05 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 3e-05 | |
| d1i4wa_ | 322 | c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake | 7e-05 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 8e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-04 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 1e-04 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-04 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 74.1 bits (181), Expect = 8e-16
Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 3/179 (1%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKA 153
++ +D + + + +VD G G G+ L ++ + T +D LA+A
Sbjct: 9 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 154 KQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212
++ L + + D D + + + P+ +++ +K GGK
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 213 VIGPVYPTFWLSRFFADVW-MLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGL 270
P + + S F + + F+ ++ K IG K + G+
Sbjct: 129 CFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGV 187
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 70.4 bits (171), Expect = 1e-14
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 13/155 (8%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP---HQLAKAKQKEPLKECTIIEGDAE 170
RV+D+G G G T L +V + +D + + Q++ ++ +G AE
Sbjct: 17 EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 74
Query: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230
LPFP D D + ++ D ++ ++E RVLK G+ ++ P + F +
Sbjct: 75 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNH 134
Query: 231 WML--------FPKEEEYIEWFQKAGFKDVKLKRI 257
E+ F +++
Sbjct: 135 LNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 169
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 67.8 bits (165), Expect = 9e-14
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
++ + + +FD +VDVGGGTG T I + + D+ P +
Sbjct: 62 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS 120
Query: 155 QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----RGIKEAYRVLKIGG 209
T + GD AD + + W D + KEA G
Sbjct: 121 GSN---NLTYVGGDMF---TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 174
Query: 210 KACVIGPVYPT------FWLSRFFADVWMLFPK-----EEEYIEWFQKAGFKDVKLKRIG 258
K +I V + DV M EEE+ + F +AGF+ K+ +
Sbjct: 175 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 234
Query: 259 P 259
Sbjct: 235 G 235
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.9 bits (168), Expect = 1e-13
Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 39/216 (18%)
Query: 71 QHKKEAFWFYRFLSIVYDHVINP----------------GHWTEDMRDEALEPADLFDRN 114
K + + FL IVY I+P G + + + L +
Sbjct: 159 IDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQL-KKG 217
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------------KEPLKE 161
+D+G G G + +
Sbjct: 218 DTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277
Query: 162 CTIIEGDAEDLPFPTDYADRY--VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
++ D + + + + + D + +++ + K+G K + +
Sbjct: 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 337
Query: 220 -----TFWLSRFFADVW--MLFPKEEEYIEWFQKAG 248
F+ + + +E+ + W G
Sbjct: 338 LTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGG 373
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 66.6 bits (161), Expect = 2e-13
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 13/155 (8%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP 173
N V+DV G G V K V D + L A+ +E D
Sbjct: 16 NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE 73
Query: 174 FPTD---YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230
+ ++P+P + EAYRVLK GG+ ++ P F +
Sbjct: 74 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 133
Query: 231 WML--------FPKEEEYIEWFQKAGFKDVKLKRI 257
K+ ++++ ++AGF+ +L
Sbjct: 134 VEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 168
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (161), Expect = 3e-13
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 11/196 (5%)
Query: 81 RFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNV 140
R +I +TE+ + R++D+G G+G +
Sbjct: 2 RIFTISESEHRIHNPFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGT 60
Query: 141 TILDQSPHQLAKAKQKEPLKECTIIEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQRGI 198
I S ++ E L + D + D G+
Sbjct: 61 GIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAE 120
Query: 199 KEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE-----EYIEWFQKAGFKDVK 253
+ + LK GG + P + + A + + + F G+ V+
Sbjct: 121 ELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVE 180
Query: 254 LKRIGPKWYRGVRRHG 269
+ G R+
Sbjct: 181 MVLADQ---EGWDRYE 193
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (159), Expect = 7e-13
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 30/202 (14%)
Query: 79 FYRFLSIVYDH-VINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA 137
F RFL+ +H + + + + ++++ +GGG G L I+ V A
Sbjct: 7 FRRFLNHSTEHQCMQ--EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQA 64
Query: 138 K------NVTILDQSPHQLAKAK------------QKEPLKECTIIEGDAEDLPFPTDYA 179
+ N +++ S Q+AK K + KE +
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKE-- 237
D + Y D +K + +L K +I + W + + FP++
Sbjct: 125 DFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQDDL 183
Query: 238 ------EEYIEWFQKAGFKDVK 253
++ + G K
Sbjct: 184 CQYITSDDLTQMLDNLGLKYEC 205
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 60.9 bits (147), Expect = 2e-11
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 17/167 (10%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDA 169
R+ +++ +G G T + D V ++ +P + + + I GDA
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131
Query: 170 EDLPFPTDYADRYVSAGSIEYWPD-PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
+ ++ P+ + IK A LK GG + +
Sbjct: 132 NKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYG---------MIAIKARS 182
Query: 229 DVWMLFPKE--EEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMG 273
PKE +E E + GFK V I P + + H + +G
Sbjct: 183 IDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP-FEKD---HVMFVG 225
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 4e-11
Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 27/201 (13%)
Query: 68 RFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFT 127
+ ++ + F VY + D+ + ++ + + VD+G G G
Sbjct: 113 HSVTDPEKLNNYEPFSPEVYGET------SFDLVAQMIDEIKM-TDDDLFVDLGSGVGQV 165
Query: 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQK------------EPLKECTIIEGDAEDLPFP 175
L + + K+ ++++ A+ + E T+ GD +
Sbjct: 166 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR 225
Query: 176 TDYADRYV-SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT--FWLSRFFADVWM 232
A+ V + + P+ +KE + +K GG+ P P SR +D+
Sbjct: 226 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGT 285
Query: 233 LFPKEE-----EYIEWFQKAG 248
+ E + W K
Sbjct: 286 IMRVVELSPLKGSVSWTGKPV 306
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 58.7 bits (141), Expect = 5e-11
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 26/161 (16%)
Query: 93 PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152
PG ++R + A+ +N VDVG GTG + + + V +D++P ++
Sbjct: 14 PGPTAMEVRCLIMCLAEP-GKNDVAVDVGCGTGG--VTLELAGRVRRVYAIDRNPEAIST 70
Query: 153 AKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIG 208
+ T++EGDA + D V GS + R LK G
Sbjct: 71 TEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILR---IIKDKLKPG 127
Query: 209 GKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249
G+ V + T + E +E + GF
Sbjct: 128 GRIIVTAILLET----------------KFEAMECLRDLGF 152
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 57.4 bits (138), Expect = 3e-10
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 21/173 (12%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
LE F+ +VDVGGG+G I+ D P + +
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI---E 118
Query: 155 QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKAC 212
PL + GD D + W D + + ++ L GK
Sbjct: 119 NAPPLSGIEHVGGDMFA---SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 175
Query: 213 VIGPVYP-------TFWLSRFFADVWMLFPK-----EEEYIEWFQKAGFKDVK 253
++ + P L ++ + E++Y + + +GF +
Sbjct: 176 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 56.9 bits (136), Expect = 5e-10
Identities = 33/170 (19%), Positives = 52/170 (30%), Gaps = 13/170 (7%)
Query: 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLA---KAKQKEPL 159
EA A + V+DVGGG G I T+++ + +
Sbjct: 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLA 130
Query: 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
T+ EGD T D ++ R L+ GG+ V+
Sbjct: 131 DRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV 190
Query: 220 TF-WLSRFFA---DVWMLFPK------EEEYIEWFQKAGFKDVKLKRIGP 259
RFF+ D+ ML +E ++ AG + G
Sbjct: 191 EGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 240
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 54.3 bits (129), Expect = 3e-09
Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 12/175 (6%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL---A 151
+D+ +A A + V+DVGGG G I + + T+L+ + +
Sbjct: 62 ACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARS 121
Query: 152 KAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211
K + ++EGD + A D R + L+ GG+
Sbjct: 122 YLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI 181
Query: 212 CVIGPVYP---TFWLSRFFADVWML------FPKEEEYIEWFQKAGFKDVKLKRI 257
+ +F D+ ML E++ AG +++++
Sbjct: 182 LIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL 236
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 54.1 bits (129), Expect = 4e-09
Identities = 35/176 (19%), Positives = 51/176 (28%), Gaps = 18/176 (10%)
Query: 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154
+ + LE F+ +VDVGGGTG IV D +
Sbjct: 63 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV----IE 118
Query: 155 QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+ GD P A + +K Y L GK V
Sbjct: 119 DAPSYPGVEHVGGDMFV-SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177
Query: 215 GPVYPTFWLSRFFA------DVWMLFPK-------EEEYIEWFQKAGFKDVKLKRI 257
+ P S DV ML ++E+ + + AGF+ K+
Sbjct: 178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-09
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 12/155 (7%)
Query: 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---------EPLK 160
+ RV++VG G + + + I++ + + +
Sbjct: 50 ASSKGGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKG 108
Query: 161 ECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT 220
+ D F D Y + + A+R+LK GG
Sbjct: 109 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 168
Query: 221 FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
+ ++D+ ++F E + +AGF+ ++
Sbjct: 169 ELMKSKYSDITIMFE--ETQVPALLEAGFRRENIR 201
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 53.2 bits (127), Expect = 6e-09
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 10/148 (6%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDL 172
+ RV+ +G +G T + VD + ++ S K + + DA
Sbjct: 57 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP 116
Query: 173 PFPTDYADR-YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW 231
+ ++ + I + A LK G+ ++ A+
Sbjct: 117 WKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDS----TAEPE 172
Query: 232 MLFPKEEEYIEWFQKAGFKDVKLKRIGP 259
+F + +E FK VK + P
Sbjct: 173 EVFKSVLKEME----GDFKIVKHGSLMP 196
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.8 bits (128), Expect = 6e-09
Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 16/201 (7%)
Query: 78 WFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA 137
+ + V+ I L RV+DV GTG ++ +V+ +
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 138 KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE---------DLPFPTDYADRYVSAGSI 188
+ A ++ KE + E D+P + S
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140
Query: 189 EYWPDPQRG-------IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI 241
+ PD + +K +++ GG + Y + ++ K +
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTK 200
Query: 242 EWFQKAGFKDVKLKRIGPKWY 262
+ + K + +
Sbjct: 201 DITTSVLTVNNKAHMVTLDYT 221
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 25/193 (12%), Positives = 47/193 (24%), Gaps = 44/193 (22%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGD 168
R V+D+G G G L + +D + + A+ + + + D
Sbjct: 24 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82
Query: 169 AEDLPFPTDYADRYV-SAGSIEYWPDPQRGIK----EAYRVLKIGGKACVIGPVYP---- 219
+ + S S Y + R L+ GG + P
Sbjct: 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILE 142
Query: 220 ------------------------------TFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249
F L + F ++ F++ G
Sbjct: 143 RYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGL 202
Query: 250 KDVKLKRIGPKWY 262
V+ K +
Sbjct: 203 SLVERKGFIDFYE 215
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 27/213 (12%)
Query: 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPA---------------DLFDRNMRVVDVGGG 123
FY + I+ G + E + + + A + R + +D+G G
Sbjct: 20 FYF--HVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAG 77
Query: 124 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR-- 181
G +V+ + L+ +P Q + ++ D
Sbjct: 78 YGGAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSY 136
Query: 182 --YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW-----MLF 234
S + + PD + +E RVLK G + P+ +
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 196
Query: 235 PKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRR 267
Y ++ G ++ +
Sbjct: 197 GSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSK 229
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 49.5 bits (117), Expect = 1e-07
Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 21/178 (11%)
Query: 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159
M + F R ++++G G T + +H ++T ++ S A + + L
Sbjct: 7 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEE--AISHAQGRL 62
Query: 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKE-AYRVLKIGGKACVIGP-- 216
K+ + D V +E+ DP +K L GG+ ++ P
Sbjct: 63 KDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 122
Query: 217 -------------VYPTFWLSRFFADVWML-FPKEEEYIEWFQKAGFKDVKLKRIGPK 260
+ ++ + +AG + I K
Sbjct: 123 NAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIFFK 180
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (119), Expect = 1e-07
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 77 FWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD 136
F Y I + ++ T R+ ++ DLF ++ V+DVG GTG ++ KH
Sbjct: 4 FDSYDHYGIHEE-MLQDTVRTLSYRNAIIQNKDLF-KDKIVLDVGCGTGILSMFAAKHG- 60
Query: 137 AKNVTILDQSPHQLA---KAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS---IEY 190
AK+V +D S + + T++ G ED+ P D +S + Y
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 191 WPDPQRGIKEAYRVLKIGGK 210
+ L GG
Sbjct: 121 ESMMDTVLYARDHYLVEGGL 140
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 14/162 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP 175
R +D+G G G +L + + + + + + + + +
Sbjct: 33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF 92
Query: 176 TDYADRYVSAGSIEYWPDPQRG--IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML 233
D +S + + I R K GG ++ + +
Sbjct: 93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFP---F 149
Query: 234 FPKEEEYIEWFQKAGFKDVK-------LKRIGPKWYRGVRRH 268
KE E ++ G+ +K L R R R
Sbjct: 150 AFKEGELRRYY--EGWDMLKYNEDVGELHRTDENGNRIKLRF 189
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 48.1 bits (113), Expect = 4e-07
Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 6/169 (3%)
Query: 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFD-RNMRVVDVGGGTGFTTLGIVKHVDA 137
Y + +YD +I + D +E + +D+ GTG T +
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 138 KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--- 194
L Q A+ K + + + D +L + S Y D
Sbjct: 62 TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDL 121
Query: 195 QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEW 243
++ K LK GG I + + LS+ + + +E + W
Sbjct: 122 KKYFKAVSNHLKEGGV--FIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 5e-07
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)
Query: 136 DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY----W 191
+ Q + +A+ K L AD VSA +E
Sbjct: 115 LIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL 174
Query: 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251
QR + +L+ GG +IG + +++ A + ++ EEE E ++G+K
Sbjct: 175 ASFQRALDHITTLLRPGGHLLLIGALEESWY-LAGEARLTVVPVSEEEVREALVRSGYKV 233
Query: 252 VKLK 255
L+
Sbjct: 234 RDLR 237
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 47.8 bits (112), Expect = 6e-07
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
Query: 79 FYRFLSIVYD----HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH 134
Y L+ YD I D +E + + RV+D+ GTG TL + +
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKRE-VRRVLDLACGTGIPTLELAER 62
Query: 135 VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP-- 192
L + ++A+ K KE + ++GD ++ F ++ + +I Y+
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252
D ++ + LK GG P + F+ R VW EE+ + + V
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDFPCW--FYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
Query: 253 KLKRI 257
+ R
Sbjct: 181 QKLRF 185
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 47.8 bits (113), Expect = 6e-07
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 19/142 (13%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
R++D G G+G + + V + V ++ A+ L + +IE
Sbjct: 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE--SNLTKWGLIERVTIK 160
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW 231
+ ++ D PDP I + + LK GG+ + P
Sbjct: 161 VRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT-------------- 206
Query: 232 MLFPKEEEYIEWFQKAGFKDVK 253
+ +E ++ Q+ F ++
Sbjct: 207 --TNQVQETLKKLQELPFIRIE 226
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 5/147 (3%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAED 171
R +D G G G T ++ + +L+ H L +AK++ + I E
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET 151
Query: 172 LPFPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229
P + D V + Y D + K + L G D
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
Query: 230 VWMLFPKEEEYIEWFQKAGFKDVKLKR 256
+ + Y F ++G + VK
Sbjct: 212 SSLTRS-DIHYKRLFNESGVRVVKEAF 237
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 47.4 bits (112), Expect = 7e-07
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP 173
M +++VG G+G + I+ ++ K +T++++ L KA L E I
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN--LSEFYDIGNVRTSRS 144
Query: 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216
D+ + I PDP +++ ++K G A P
Sbjct: 145 DIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP 187
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 77 FWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD 136
F Y I + ++ TE RD + +F ++ V+DVG GTG ++ K
Sbjct: 1 FSSYGHYGIHEE-MLKDKIRTESYRDFIYQNPHIF-KDKVVLDVGCGTGILSMFAAKAG- 57
Query: 137 AKNVTILDQSPHQLA---KAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
AK V +DQS + + T+I+G E++ P + D +S +
Sbjct: 58 AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF 117
Query: 194 ---PQRGIKEAYRVLKIGGK 210
+ + L GG
Sbjct: 118 ESMLDSVLYAKNKYLAKGGS 137
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 39/242 (16%), Positives = 67/242 (27%), Gaps = 35/242 (14%)
Query: 16 SGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSSSRPASQPRFIQHKKE 75
+S ++ H K+G V+ Q+ + S P +Q +
Sbjct: 9 QPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR---------SRDPGDSAEMMQAR-R 58
Query: 76 AFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV 135
AF + D ++ A L D+ V+D+G G G+ T +
Sbjct: 59 AFLDAGHYQPLRDAIV------------AQLRERLDDKATAVLDIGCGEGYYTHAFADAL 106
Query: 136 DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ 195
LD S + + T + LPF D + +
Sbjct: 107 PEITTFGLDVSKVA--IKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK----- 159
Query: 196 RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
+E RV+K GG P + + Q GF +
Sbjct: 160 --AEELARVVKPGGWVITATPGPRHLMELK---GLIYNEVHLHAPHAE-QLEGFTLQQSA 213
Query: 256 RI 257
+
Sbjct: 214 EL 215
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 46.5 bits (110), Expect = 2e-06
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 12/109 (11%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK------EPLKECTIIEG 167
RV++ G G+G TL +++ V V +Q A++ +P ++
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216
D D P DR + P + R+L GG V
Sbjct: 158 DLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVA 201
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (106), Expect = 2e-06
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 96 WTEDMRDEALEPADLFDR---NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152
W R L R V++G GTG V K ++ S
Sbjct: 16 WFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRF------AVPLKIKIGVEPSERM--- 66
Query: 153 AKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212
+ + +++G AE+LP + D + +I + DP+R +KEAYR+LK GG
Sbjct: 67 -AEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 125
Query: 213 VIGPVYPTFWLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGV 265
V +F + + F EE ++ +KAGF++ K+ + K +
Sbjct: 126 VGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL 185
Query: 266 RR 267
Sbjct: 186 SE 187
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.6 bits (107), Expect = 4e-06
Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 80 YRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN 139
Y I + ++ T R+ LF ++ V+DVG GTG + K A+
Sbjct: 2 YAHFGIHEE-MLKDEVRTLTYRNSMFHNRHLF-KDKVVLDVGSGTGILCMFAAKAG-ARK 58
Query: 140 VTILDQSPHQLAK---AKQKEPLKECTIIEGDAEDLPFPTDYADR---YVSAGSIEYWPD 193
V ++ S K + TII+G E++ P + D + Y
Sbjct: 59 VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESM 118
Query: 194 PQRGIKEAYRVLKIGGK 210
+ + L G
Sbjct: 119 LNTVLHARDKWLAPDGL 135
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 7e-06
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 18/118 (15%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK--------------EP 158
V++ G G+G +L + K V ++ V + AK+ E
Sbjct: 99 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158
Query: 159 LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216
I D D A +++ +P + Y LK GG V
Sbjct: 159 PDNVDFIHKDISGATE--DIKSLTFDAVALDM-LNPHVTLPVFYPHLKHGGVCAVYVV 213
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 42.8 bits (99), Expect = 2e-05
Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 23/215 (10%)
Query: 73 KKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIV 132
K ++ FY ++ YD + W R + RV+D+GGGTG
Sbjct: 2 KLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGK----WS 57
Query: 133 KHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192
+ + ++ P + +E + + + + + Y
Sbjct: 58 LFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117
Query: 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTF-----------WLSRFFADVWMLFPKEEEYI 241
+ + E RVL G + TF ++RF
Sbjct: 118 NKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSF 177
Query: 242 EWFQ--------KAGFKDVKLKRIGPKWYRGVRRH 268
+ GF+ V ++ IG Y R
Sbjct: 178 NSYAFKPEDLDSLEGFETVDIRGIGVMEYPDERIS 212
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 31/214 (14%)
Query: 67 PRFIQHKKEAFWFYRFLSIVYDHV------INPGHWTEDMRDEALEPADLFDRNMRVVDV 120
+ E + +++ ++ + ++ E + A + + VVD+
Sbjct: 55 GETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDM 114
Query: 121 GGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLPFPT 176
G G +L I + V +++ P+ + + + D D
Sbjct: 115 FAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF-PGE 172
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236
+ ADR + + Y I +A + K G + M
Sbjct: 173 NIADRIL----MGYVVRTHEFIPKALSIAKDGA----------IIHYHNTVPEKLMPREP 218
Query: 237 EEEYIEWFQKAGFKDVKL-----KRIGPKWYRGV 265
E + ++ G+ KL KR P + V
Sbjct: 219 FETFKRITKEYGYDVEKLNELKIKRYAPGVWHVV 252
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 22/166 (13%)
Query: 93 PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152
H T + +AL +V+D+G G+G + K +D P L +
Sbjct: 102 GHHETTRLALKALARHLR--PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQ 157
Query: 153 AKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212
A+ + + A Y L GG+A
Sbjct: 158 AEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA--NLYAELHAALAPRYREALVPGGRAL 215
Query: 213 VIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
+ G +L + E AGF+ ++ G
Sbjct: 216 LTG----------------ILKDRAPLVREAMAGAGFRPLEEAAEG 245
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (97), Expect = 7e-05
Identities = 12/89 (13%), Positives = 26/89 (29%)
Query: 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI 164
L ++V+D+ G G + + ++L++ K I
Sbjct: 35 LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQI 94
Query: 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPD 193
++ D D ++ D D
Sbjct: 95 LKRDPYDWSTYSNLIDEERIFVPEVQSSD 123
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 8e-05
Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 14/205 (6%)
Query: 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAK 138
+YR D IN + + + +V+D+ G G + + +
Sbjct: 5 YYRVFPTYTD--INSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV 62
Query: 139 NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP--DPQR 196
+ + + A+ K I GDA L F D + SI ++ + +
Sbjct: 63 VGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQ 122
Query: 197 GIKEAYRVLKIGGKACV----IGPVYPTFWLSRFFADVWML---FPKEEE---YIEWFQK 246
KE RVLK GK + + + P S + + P +EE IE+ +
Sbjct: 123 VFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSE 182
Query: 247 AGFKDVKLKRIGPKWYRGVRRHGLI 271
V+ G + +
Sbjct: 183 QDSFRVRFNVWGKTGVELLAKLYFT 207
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 15/176 (8%), Positives = 40/176 (22%), Gaps = 28/176 (15%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE-- 170
RV+ G + +V + S + + + + +GD +
Sbjct: 20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 171 --------------DLPFPTDYADRYVSAGSIEYWPDPQR--GIKEAYRVLKIGGKACVI 214
+ + ++ P R ++ ++ +I
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 215 GPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP--KWYRGVRRH 268
Y L + ++ K+ RG++
Sbjct: 138 TLEYDQALLEG-----PPFSVPQTWLHRVMS-GNWEVTKVGGQDTLHSSARGLKAG 187
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 40.5 bits (93), Expect = 1e-04
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 37/213 (17%)
Query: 77 FWFYRFLSIVYDHVIN---PGHWTEDMRDEALEPADLFDR-NMRVVDVGGGTGFTTLGIV 132
F F ++ V+ +I PG+ ++ A+ F + V D+G G TL
Sbjct: 1 FIFDENVAEVFPDMIQRSVPGY--SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSAR 58
Query: 133 KHVDAKNV--TILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAG 186
++++ NV +D S + + +Q I+ D +
Sbjct: 59 RNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118
Query: 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK---------- 236
D + + Y L G + K
Sbjct: 119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEV 178
Query: 237 ---------------EEEYIEWFQKAGFKDVKL 254
E + + GF V+L
Sbjct: 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 211
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 18/150 (12%)
Query: 74 KEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVK 133
K + SI + I+ H + L L + +DVG G+G T +
Sbjct: 40 KCNPYMDSPQSIGFQATISAPHMHAYALE--LLFDQL-HEGAKALDVGSGSGILTACFAR 96
Query: 134 HV-DAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLPFPTDYADRYVS 184
V V +D + + ++ GD D
Sbjct: 97 MVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 156
Query: 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+ P LK GG+ +
Sbjct: 157 GAAAPVVPQAL------IDQLKPGGRLILP 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 340 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.92 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.9 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.89 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.88 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.88 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.87 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.85 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.82 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.82 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.82 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.81 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.81 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.8 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.79 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.77 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.76 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.75 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.75 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.74 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.74 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.7 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.7 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.68 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.64 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.63 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.62 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.62 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.58 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.57 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.56 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.56 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.55 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.53 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.51 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.48 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.46 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.4 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.35 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.34 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.28 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.26 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.24 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.23 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.17 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.12 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.1 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.1 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.09 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.07 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.06 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.98 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.95 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.92 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.91 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.88 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.85 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.84 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.79 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.78 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.76 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.76 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.74 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.73 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.73 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.7 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.69 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.64 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.61 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.55 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.55 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.53 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.38 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.27 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.2 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.1 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.08 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.01 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.92 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.85 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.5 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.47 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.42 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.35 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.31 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.31 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.28 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.21 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.14 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.1 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.06 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.04 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.03 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.84 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.69 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.57 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.52 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.45 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.45 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.11 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.84 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.8 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.76 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.7 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.43 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.24 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.19 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.1 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.81 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.71 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.51 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.5 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.48 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.43 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.39 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.18 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.67 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.22 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.95 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.63 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.43 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.27 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.14 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.55 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.51 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.29 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.74 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.68 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.27 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.2 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.11 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 89.9 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 89.45 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.14 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.88 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.43 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 88.09 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.82 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.55 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.31 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.36 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 86.16 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.05 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.01 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 85.96 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.82 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.53 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 84.45 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 84.24 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.13 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.35 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.24 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 83.18 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.06 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 82.09 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.05 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.66 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.63 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 80.54 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 80.4 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=1.1e-25 Score=193.73 Aligned_cols=152 Identities=24% Similarity=0.346 Sum_probs=124.0
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCc
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
++++.+.+ +++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ ...++++++++|++++++++++|
T Consensus 6 ~ll~~~~l-~~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 6 KLMQIAAL-KGNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHTC-CSCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhcCC-CCcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 34444544 57899999999999999999988 57999999999999999876 44578999999999999999999
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh----h----hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF----A----DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
|+|++..+++|++|+..+++++.++|||||++++.++..+.......+ . ......++.+++.++|+++||++
T Consensus 83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 162 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 162 (231)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence 999999999999999999999999999999999987655432211111 1 11223568899999999999999
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
+++...
T Consensus 163 ~~~~~~ 168 (231)
T d1vl5a_ 163 EELHCF 168 (231)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 877655
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.9e-24 Score=186.54 Aligned_cols=152 Identities=21% Similarity=0.315 Sum_probs=124.3
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCc
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~f 179 (340)
.+++.+++ +++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. ..+++.++++|++++++++++|
T Consensus 7 ~l~~~~~~-~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAEC-RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHTC-CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhCC-CCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 34455554 58999999999999999999987 579999999999999998773 3468999999999999999999
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhhHhh-------hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFA-------DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
|+|++..+++|++|+..+++++.++|||||++++.+...+.. ....+.. .......+..++..+++++||.+
T Consensus 84 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~ 163 (234)
T d1xxla_ 84 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 163 (234)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred ceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCce
Confidence 999999999999999999999999999999999986554432 2222211 12223457899999999999988
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
.++...
T Consensus 164 ~~~~~~ 169 (234)
T d1xxla_ 164 QDIQKW 169 (234)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 776654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.3e-23 Score=177.77 Aligned_cols=136 Identities=27% Similarity=0.358 Sum_probs=113.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||||||+|.++..+. +++|+|+|+.+++.++++ +++++++|++++++++++||+|++..+++|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~ 105 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----GVFVLKGTAENLPLKDESFDFALMVTTICFVD 105 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----cccccccccccccccccccccccccccccccc
Confidence 45689999999999987763 468999999999999974 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh-------HhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
|+..+++++.++|+|||++++.++............. ....+++.+++.++|+++||+++++....
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~~ 178 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 178 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEEe
Confidence 9999999999999999999999877654332211111 11125689999999999999999887653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.90 E-value=1.8e-23 Score=185.46 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=122.8
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.+++.+|||||||+|.++..+++++ +.+|+|+|+|+.+++.|+++. ..++++++++|++++|+++++||+|++..
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 3588999999999999999999875 679999999999999999763 23689999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh----HhhHhhhH-hhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW----LSRFFADV-WMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+++|++|+..+++++.++|||||++++.++...... ...+.... ...+.+.+++.++++++||+++.+.....
T Consensus 144 ~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~ 221 (282)
T d2o57a1 144 AFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPD 221 (282)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHH
T ss_pred hhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECcH
Confidence 999999999999999999999999999865433211 11121111 12356889999999999999999887653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.89 E-value=2.8e-23 Score=181.19 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=139.0
Q ss_pred cccccccCccCcCCchhhhhhhhHHhhhhh----hhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchH
Q 019479 52 FTPRCSLSSSRPASQPRFIQHKKEAFWFYR----FLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFT 127 (340)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~ 127 (340)
..+|.+|.+.++.+.+.+....+..++.|- .....|...+... .......++...+. .+..+|||||||+|.+
T Consensus 18 ~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~--~~~~~~~~~~~~d~-~~~~~VLDvGcG~G~~ 94 (253)
T d1tw3a2 18 DISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACD--QDVAFDAPAAAYDW-TNVRHVLDVGGGKGGF 94 (253)
T ss_dssp GGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTT--TTTTTHHHHHHSCC-TTCSEEEEETCTTSHH
T ss_pred cccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHh--HHHHHHHHHhhcCC-ccCCEEEEeCCCCCHH
Confidence 446777888887666655544433333221 1222233332221 11122333444443 4678999999999999
Q ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHH
Q 019479 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEA 201 (340)
Q Consensus 128 ~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~ 201 (340)
+..+++++|+.+++++|+ +++++.++++. ...+++++.+|+.+. . ..+||+|++.+++||++|.+ .+|+++
T Consensus 95 ~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~ 171 (253)
T d1tw3a2 95 AAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-L-PRKADAIILSFVLLNWPDHDAVRILTRC 171 (253)
T ss_dssp HHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-SSCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-c-ccchhheeeccccccCCchhhHHHHHHH
Confidence 999999999999999998 67888888762 236799999998652 2 35699999999999998775 789999
Q ss_pred HHhcccCcEEEEEccCCCchh----HhhHh-----hhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 202 YRVLKIGGKACVIGPVYPTFW----LSRFF-----ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 202 ~~~LkpgG~l~i~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+++|||||+|+|.+....... ....+ .......++.++|.++++++||+++++..+.
T Consensus 172 ~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 172 AEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp HHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 999999999999876443211 11111 1111235689999999999999999988874
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-22 Score=176.63 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=125.5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~ 172 (340)
.......+...+.+ .++.+|||||||+|..+..+++.+ +.+|+|+|+|+.|++.|+++. ..++++|+++|++++
T Consensus 18 ~~~~~~~l~~~~~l-~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 18 TEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp CHHHHHHHHHHTCC-CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CHHHHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 44445555565555 478999999999999999999875 589999999999999998762 235699999999987
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh-----HhhcCCCHHHHHHHHHHC
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD-----VWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~a 247 (340)
+.+++||+|++..+++|++|+..++++++++|||||++++.++............. .+..+.+..++.+.++++
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 174 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDL 174 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTT
T ss_pred -cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHc
Confidence 46788999999999999999999999999999999999998654322111111111 122366889999999999
Q ss_pred CCcEEEEEEeC
Q 019479 248 GFKDVKLKRIG 258 (340)
Q Consensus 248 GF~~v~~~~~~ 258 (340)
||++++.....
T Consensus 175 G~~~v~~~~~~ 185 (245)
T d1nkva_ 175 GYDVVEMVLAD 185 (245)
T ss_dssp TBCCCEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99988776654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-22 Score=173.16 Aligned_cols=145 Identities=14% Similarity=0.037 Sum_probs=117.4
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
..++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++... .+++|+++|++++++++++||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 3467899999999999999887664 46899999999999999988543 4679999999999888899999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++|+++++ .++++++++|||||.+++.+.......... .......++.+++.++++++||++++.+...
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD--DVDSSVCRDLDVVRRIICSAGLSLLAEERQE 207 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE--TTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc--cCCceeeCCHHHHHHHHHHcCCEEEEEEEeC
Confidence 99998774 799999999999999999875544211100 0111123578999999999999999887643
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.88 E-value=1.6e-22 Score=176.42 Aligned_cols=200 Identities=19% Similarity=0.239 Sum_probs=140.1
Q ss_pred cccccCccCcCCchhhhhhhhHHhhhhhh----hhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHH
Q 019479 54 PRCSLSSSRPASQPRFIQHKKEAFWFYRF----LSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTL 129 (340)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~ 129 (340)
.|.+|.+.++.+.+.+....+..++.|-. ....|++.+... .......++...++ ....+|||||||+|.++.
T Consensus 21 ~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~--~~~~~~~~~~~~d~-~~~~~vlDvG~G~G~~~~ 97 (256)
T d1qzza2 21 AFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCD--EDLAYEAPADAYDW-SAVRHVLDVGGGNGGMLA 97 (256)
T ss_dssp GGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGG--STTTTHHHHHTSCC-TTCCEEEEETCTTSHHHH
T ss_pred hHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhh--HHHHHHHHHhcCCC-ccCCEEEEECCCCCHHHH
Confidence 57778888887776666555544433322 122333333221 11122333444443 466899999999999999
Q ss_pred HHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHHH
Q 019479 130 GIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYR 203 (340)
Q Consensus 130 ~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~ 203 (340)
.+++++|+.+++++|+ +++++.++++. ..+++.++.+|+.+ +.+ .+||+|++.+++|+++|.+ .+|+++++
T Consensus 98 ~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~ 174 (256)
T d1qzza2 98 AIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVR 174 (256)
T ss_dssp HHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccccccCcHHHHHHHHHHHh
Confidence 9999999999999998 88888888662 23679999999875 333 4599999999999998774 67999999
Q ss_pred hcccCcEEEEEccCCCch-----hHhhHhh-----hHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 204 VLKIGGKACVIGPVYPTF-----WLSRFFA-----DVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 204 ~LkpgG~l~i~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+|||||+++|.+...... .....+. ...-..+|.++|.++++++||++++++..+.
T Consensus 175 ~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 175 ALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGS 240 (256)
T ss_dssp HEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECC
T ss_pred hcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEEeCC
Confidence 999999999987643211 1111111 0111256899999999999999999988764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.87 E-value=1.1e-21 Score=168.11 Aligned_cols=141 Identities=19% Similarity=0.152 Sum_probs=115.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .+++++++|+++.++ +++||+|++.++++|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK-DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID 95 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC-SCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccc-ccccccccccccccc-ccccccccccceeEecC
Confidence 5678999999999999999887 6789999999999999998865 579999999988775 57899999999999999
Q ss_pred CHHHHHHHHH-HhcccCcEEEEEccCCCchhHhh----------------HhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 193 DPQRGIKEAY-RVLKIGGKACVIGPVYPTFWLSR----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 193 d~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
|+..+++++. ++|||||.+++..++....+... .........++.+++.++++++||++++..
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998 78999999999876544322110 001111235689999999999999988766
Q ss_pred Ee
Q 019479 256 RI 257 (340)
Q Consensus 256 ~~ 257 (340)
.+
T Consensus 176 ~~ 177 (225)
T d2p7ia1 176 GI 177 (225)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=2.9e-21 Score=165.32 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
+++.+|||||||+|..+..+++.. |+.+|+|+|+|+.|++.|+++. ...++.+..+|+.+.+ .+.+|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEe
Confidence 478899999999999999999864 6889999999999999999863 2345677788876654 5678999999
Q ss_pred CcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhH-hhHhh------------------------hHhhcCCCHH
Q 019479 186 GSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-SRFFA------------------------DVWMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~------------------------~~~~~~~~~~ 238 (340)
.++|+++ |+..+|++++++|||||.+++.+........ ..... .......+.+
T Consensus 116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999984 6679999999999999999998765432211 00000 0011245889
Q ss_pred HHHHHHHHCCCcEEEEE
Q 019479 239 EYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~ 255 (340)
++.++|+++||+.+++.
T Consensus 196 ~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHcCCCceEEe
Confidence 99999999999998875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=2.1e-21 Score=169.07 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=118.6
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccE
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
.++..+.. .++.+|||+|||+|.++..++..+ ..+|+++|+|+.|++.|+++.. .++++++++|++++++++++||+
T Consensus 84 ~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 84 NFIASLPG-HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL 161 (254)
T ss_dssp HHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred HHHhhCCC-CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence 33444433 467899999999999999888764 4589999999999999998864 35689999999999888899999
Q ss_pred EEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 182 v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|++..+++|++|.+ ++|+++.++|||||++++.+......... .........++.+++.++++++||++++....
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~-~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-VDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-EETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce-ecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 99999999998875 78999999999999999987543311000 00000112458899999999999999887653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.85 E-value=8.6e-21 Score=167.75 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=117.4
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~ 178 (340)
..++.......++.+|||||||+|.++..+++.+| +.+|+|+|+|+.+++.|+++... .+++|+++|+.+++++ ++
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~ 94 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DK 94 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SC
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CC
Confidence 33333333335788999999999999999999876 47999999999999999987432 3688999999988865 57
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch------------------hHhhHhhhHhhc----CCC
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------------------WLSRFFADVWML----FPK 236 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------------~~~~~~~~~~~~----~~~ 236 (340)
||+|++..+++|++|+..+++++.++|||||++++.++..... .....+...... ...
T Consensus 95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 174 (281)
T d2gh1a1 95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 174 (281)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTG
T ss_pred ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999987532100 001111111111 111
Q ss_pred HHHHHHHHHHCCCcEEEEEEeC
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..++..+|+++||+++++....
T Consensus 175 ~~~l~~~l~eaGf~~i~~~~~~ 196 (281)
T d2gh1a1 175 GMKIPIYLSELGVKNIECRVSD 196 (281)
T ss_dssp GGTHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEEec
Confidence 2467889999999999887643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.7e-21 Score=167.24 Aligned_cols=135 Identities=27% Similarity=0.422 Sum_probs=105.4
Q ss_pred HhhhhhhhhhhhhcccCCCCc--hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH
Q 019479 76 AFWFYRFLSIVYDHVINPGHW--TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a 153 (340)
.+.+|+.+++.|+.......+ .......++... .+++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|
T Consensus 5 ~~~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a 80 (246)
T d2avna1 5 SWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEY--LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVA 80 (246)
T ss_dssp HHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHH--CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh--cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccc
Confidence 346677777777764433211 122222222222 236789999999999999999887 78999999999999999
Q ss_pred HHhCCCCCcEEEEcCCCCCCCCCCCccEEEec-CcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 154 KQKEPLKECTIIEGDAEDLPFPTDYADRYVSA-GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 154 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++... .++.+|++++++++++||+|++. .++||++|+..+|+++.++|||||.+++..++
T Consensus 81 ~~~~~~---~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 81 REKGVK---NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHTCS---CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cccccc---ccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 987532 36789999999999999999985 68999999999999999999999999987653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=6.7e-21 Score=165.20 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=98.8
Q ss_pred hhhhhhhhhcccCCC-CchH--HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q 019479 80 YRFLSIVYDHVINPG-HWTE--DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~ 156 (340)
|+.+++.|+..+... .+.. ......+.... .++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|+++
T Consensus 3 y~~~A~~YD~l~~~~~~y~~~~~~~~~~~~~~~--~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~ 78 (246)
T d1y8ca_ 3 YNKFAHIYDKLIRADVDYKKWSDFIIEKCVENN--LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp HHHHHHHHHHHTTCSCCHHHHHHHHHHHHHTTT--CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC--CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhcccc
Confidence 666678887766543 2211 11222222222 35689999999999999999998 67999999999999999987
Q ss_pred CC--CCCcEEEEcCCCCCCCCCCCccEEEec-CcccccCCH---HHHHHHHHHhcccCcEEEEE
Q 019479 157 EP--LKECTIIEGDAEDLPFPTDYADRYVSA-GSIEYWPDP---QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 157 ~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~~~d~---~~~l~~~~~~LkpgG~l~i~ 214 (340)
.. ..+++++++|+.++++ +++||+|+|. .+++|+.+. .+++++++++|||||.+++.
T Consensus 79 ~~~~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 79 FRSQGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHHTTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCccceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 32 3479999999988775 4689999975 677777654 47899999999999999864
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=5.9e-21 Score=165.84 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=99.0
Q ss_pred hhhhhhhhhhhcccCCC--Cc--hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH
Q 019479 78 WFYRFLSIVYDHVINPG--HW--TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a 153 (340)
.+|+..++.|+.+.... .+ .......++..... .++++|||||||+|..+..+++. +.+|+|+|+|+.|++.|
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred chhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCCccchhhccc--ceEEEEEeecccccccc
Confidence 35555666666543221 01 11122333333333 36789999999999999999997 67999999999999999
Q ss_pred HHhCC--CCCcEEEEcCCCCCCCCCCCccEEEec-CcccccC--CHHHHHHHHHHhcccCcEEEEEc
Q 019479 154 KQKEP--LKECTIIEGDAEDLPFPTDYADRYVSA-GSIEYWP--DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 154 ~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++.. ..+++++++|+++++++ ++||+|++. .+++|+. +...+|++++++|||||++++..
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 98743 24699999999999876 579999986 5667763 44589999999999999998753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.82 E-value=2.9e-21 Score=166.56 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=135.6
Q ss_pred CCCcccccccccCccCcCCchh-hhhhhhHHhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPR-FIQHKKEAFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGG 123 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG 123 (340)
..|..+.+|.++.+++..+... |...++...+.|-...+...+.++.. .........+++....+....+|||||||
T Consensus 12 ~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG 91 (244)
T d1fp1d2 12 CYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGG 91 (244)
T ss_dssp TCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCT
T ss_pred hCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCC
Confidence 4578888999999988765543 55555544433322222222222211 11233344555555544567899999999
Q ss_pred cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHH
Q 019479 124 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEA 201 (340)
Q Consensus 124 ~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~ 201 (340)
+|.++..+++++|+.+++.+|+ |..++.+ ....+++++.+|+.+ +.+ ..|+|++.+++|+++|.+ ++|+++
T Consensus 92 ~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~de~~~~iL~~~ 164 (244)
T d1fp1d2 92 SGRNLELIISKYPLIKGINFDL-PQVIENA---PPLSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWSDEKCIEFLSNC 164 (244)
T ss_dssp TSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---CCCTTEEEEECCTTT-CCC--CEEEEEEESSGGGSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCCeEEEecc-hhhhhcc---CCCCCeEEecCCccc-ccc--cceEEEEehhhhhCCHHHHHHHHHHH
Confidence 9999999999999999999999 7665433 344789999999965 333 469999999999998875 789999
Q ss_pred HHhcccCcEEEEEccCCCc----hhHh---hHhh-----hHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 202 YRVLKIGGKACVIGPVYPT----FWLS---RFFA-----DVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 202 ~~~LkpgG~l~i~~~~~~~----~~~~---~~~~-----~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++.|+|||+|+|.+...+. .... ..+. ...-..+|.++|.++|++|||+.+++...
T Consensus 165 ~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~ 232 (244)
T d1fp1d2 165 HKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACR 232 (244)
T ss_dssp HHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEec
Confidence 9999999999998754321 1111 1111 11112568999999999999999988654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=2.3e-19 Score=158.36 Aligned_cols=161 Identities=24% Similarity=0.226 Sum_probs=124.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~ 175 (340)
..+.+++.+.+ +++.+|||||||.|.++..+++.+ +++|+|+++|+++++.++++.. ..++.+...|.. +.
T Consensus 49 k~~~~~~~l~l-~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~ 123 (291)
T d1kpia_ 49 KRKLALDKLNL-EPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EF 123 (291)
T ss_dssp HHHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GC
T ss_pred HHHHHHHhcCC-CCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---cc
Confidence 34455666665 589999999999999999999887 6799999999999999987622 245777777764 35
Q ss_pred CCCccEEEecCcccccCC---------HHHHHHHHHHhcccCcEEEEEccCCCchhHh---------------hHhhhH-
Q 019479 176 TDYADRYVSAGSIEYWPD---------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLS---------------RFFADV- 230 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d---------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~- 230 (340)
+++||.|++..+++|+.+ .+.+++++.++|||||++++.....+..... .++...
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 688999999999999976 4689999999999999999886554322110 111111
Q ss_pred --hhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccccc
Q 019479 231 --WMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGV 265 (340)
Q Consensus 231 --~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~ 265 (340)
...+++..++...++++||++++.+.++.++....
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence 11256899999999999999999999977654443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=6.6e-20 Score=161.36 Aligned_cols=157 Identities=24% Similarity=0.286 Sum_probs=120.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~ 175 (340)
..+.+++.+.+ +++.+|||||||.|.++..+++.+ +++|+|+|+|+++++.|+++.. ..++.+...|..++
T Consensus 40 k~~~~~~~l~l-~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 40 KVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 34556666665 589999999999999999998886 6799999999999999998732 23567777777654
Q ss_pred CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhH---------------hhHhhhHh---hcCC
Q 019479 176 TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWL---------------SRFFADVW---MLFP 235 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~~~~~---~~~~ 235 (340)
+++||.|++..+++|+.+. ..+++++.++|||||++++.......... ..++.... ..++
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 4689999999999999654 78999999999999999987643322110 01111111 1256
Q ss_pred CHHHHHHHHHHCCCcEEEEEEeCCcc
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRIGPKW 261 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~~~~~ 261 (340)
+.+++.+.++++||++++++.++.+.
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~~~hY 220 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSLRPHY 220 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEECHHHH
T ss_pred chHhhhhhHHhhccccceeeecccCH
Confidence 89999999999999999999886553
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=2.5e-19 Score=157.69 Aligned_cols=160 Identities=23% Similarity=0.206 Sum_probs=124.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~ 175 (340)
..+.+++.+.+ +++.+|||||||.|..+..+++.+ +++|+|+++|+++++.|+++.. ..++++..+|..+++
T Consensus 50 k~~~~~~~l~l-~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 50 KIDLALGKLGL-QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 125 (285)
T ss_dssp HHHHHHTTTTC-CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHcCC-CCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence 34556666665 689999999999999999999997 6899999999999999987632 357899999987753
Q ss_pred CCCccEEEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchh-----------H----hhHhhhHh---hcCC
Q 019479 176 TDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFW-----------L----SRFFADVW---MLFP 235 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------~----~~~~~~~~---~~~~ 235 (340)
++||.|++..+++|+. +...+++++.++|||||++++......... . ..++.... ...+
T Consensus 126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 6799999999999994 457999999999999999998764422111 0 01111110 1256
Q ss_pred CHHHHHHHHHHCCCcEEEEEEeCCccccc
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRIGPKWYRG 264 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 264 (340)
+..++.++++++||+++++..++.+..+.
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~~~hYarT 233 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSLQPHYAKT 233 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECHHHHHHH
T ss_pred ChhhHHHHHHHhchhhcccccchhhHHHH
Confidence 88999999999999999999987554333
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=4.8e-20 Score=157.16 Aligned_cols=104 Identities=25% Similarity=0.246 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. ...++.++++|+.++++++++||+|++..+++
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 46789999999999999999986 789999999999999999763 23567889999999999999999999999999
Q ss_pred ccC--CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 190 YWP--DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 190 ~~~--d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|++ |...+|+++.++|||||++++..+.
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 997 5568999999999999999887643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.81 E-value=1.5e-20 Score=162.13 Aligned_cols=205 Identities=21% Similarity=0.235 Sum_probs=141.3
Q ss_pred CCCcccccccccCccCcCCch-hhhhhhhHHhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCc
Q 019479 47 QNAKFFTPRCSLSSSRPASQP-RFIQHKKEAFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGG 123 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG 123 (340)
.+|....+|+.+.++++.+.. .|...++..+|.|-...+.+.+.|+.. .........+...........+|||||||
T Consensus 11 ~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG 90 (244)
T d1fp2a2 11 LDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGG 90 (244)
T ss_dssp TCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCT
T ss_pred hCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCC
Confidence 457788999999999986644 466555554444433333232222211 11122222332322222356789999999
Q ss_pred cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHH
Q 019479 124 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEA 201 (340)
Q Consensus 124 ~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~ 201 (340)
+|.++..+++++|+.++++.|+ |+.++.+. ..++++++.+|+.+. . ..+|++++.+++|+++|.+ ++|+++
T Consensus 91 ~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---~~~rv~~~~gD~f~~-~--p~aD~~~l~~vLHdw~d~~~~~iL~~~ 163 (244)
T d1fp2a2 91 TGTTAKIICETFPKLKCIVFDR-PQVVENLS---GSNNLTYVGGDMFTS-I--PNADAVLLKYILHNWTDKDCLRILKKC 163 (244)
T ss_dssp TSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---CBTTEEEEECCTTTC-C--CCCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---ccCceEEEecCcccC-C--CCCcEEEEEeecccCChHHHHHHHHHH
Confidence 9999999999999999999999 76665443 347899999999763 2 3589999999999998886 789999
Q ss_pred HHhcccC---cEEEEEccCCCchh----H--hhHhhhHh-----hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 202 YRVLKIG---GKACVIGPVYPTFW----L--SRFFADVW-----MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 202 ~~~Lkpg---G~l~i~~~~~~~~~----~--~~~~~~~~-----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++.|+|| |+++|.+...+... . .....+.. -..+|.++|.++|++|||+++++....
T Consensus 164 ~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~~ 234 (244)
T d1fp2a2 164 KEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLT 234 (244)
T ss_dssp HHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEECC
Confidence 9999998 78888875433211 1 11111111 125689999999999999999988764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.80 E-value=1.5e-20 Score=162.47 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=140.6
Q ss_pred CCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCcc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGT 124 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~ 124 (340)
.++.++.+|.+|.++++.++..|...++...+.|-...+.+...+... .+.......++..........+|||||||+
T Consensus 13 ~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~ 92 (243)
T d1kyza2 13 QDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGT 92 (243)
T ss_dssp TSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTT
T ss_pred cCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCC
Confidence 456778999999999998887776555444333222222222222211 112223344555554444567999999999
Q ss_pred chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHH
Q 019479 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAY 202 (340)
Q Consensus 125 G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~ 202 (340)
|.++..+++++|+.+++++|+ |..++.++ ..++++++.+|+.+ +.+ ..|++++.+++|++++.+ .+|++++
T Consensus 93 G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---~~~r~~~~~~d~~~-~~P--~ad~~~l~~vlh~~~d~~~~~iL~~~~ 165 (243)
T d1kyza2 93 GAVINTIVSKYPTIKGINFDL-PHVIEDAP---SYPGVEHVGGDMFV-SIP--KADAVFMKWICHDWSDEHCLKFLKNCY 165 (243)
T ss_dssp SHHHHHHHHHCTTSEEEEEEC-TTTTTTCC---CCTTEEEEECCTTT-CCC--CCSCEECSSSSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEccc-HHhhhhcc---cCCceEEecccccc-cCC--CcceEEEEEEeecCCHHHHHHHHHHHH
Confidence 999999999999999999999 55544333 34689999999965 333 368899999999998765 7899999
Q ss_pred HhcccCcEEEEEccCCCc----h--hHhhHhhhHh-------hcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 203 RVLKIGGKACVIGPVYPT----F--WLSRFFADVW-------MLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~----~--~~~~~~~~~~-------~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|+|||+++|.+...+. . .......+.. -..++.++|+++|++|||+.+++...
T Consensus 166 ~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 166 EALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233 (243)
T ss_dssp HHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEE
T ss_pred HhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEe
Confidence 999999999998754321 1 1111111111 12467999999999999999988765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.79 E-value=9.2e-19 Score=146.54 Aligned_cols=137 Identities=20% Similarity=0.232 Sum_probs=103.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++ ...+++.+...|+..+++ +++||+|++..+++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence 4469999999999999999998 78999999999999999866 334678999999988774 67899999999999
Q ss_pred ccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|+++. ..+++++.++|+|||++++............ .......+..++.+++ +||+++...+.
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~---~~~~~~~~~~el~~~~--~~~~i~~~~e~ 171 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT---VGFPFAFKEGELRRYY--EGWDMLKYNED 171 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------CCCCBCTTHHHHHT--TTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCC---CCCCCccCHHHHHHHh--CCCeEEEeeec
Confidence 99755 4799999999999999998765432211111 0011123555677776 68988765543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=2.2e-18 Score=146.96 Aligned_cols=141 Identities=19% Similarity=0.146 Sum_probs=112.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
+++.+|||+|||+|..+..+++..|+..|+|+|+|+.|++.++++.. .+|+.++.+|..... ..+..+|++++...++
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~ 152 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA 152 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc
Confidence 68999999999999999999999888999999999999999998844 467888888886643 4556788888888888
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.++...+++++.+.|||||.+++............. . ...++..+.|+++||++++..++.+
T Consensus 153 ~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~-~------~~~~e~~~~L~~aGF~ive~idL~p 215 (230)
T d1g8sa_ 153 QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-K------EIFKEQKEILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-H------HHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH-H------HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 9988899999999999999999887532211000000 0 0235778899999999999988754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-19 Score=157.69 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-----------------------------
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----------------------------- 162 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i----------------------------- 162 (340)
.++.+|||||||+|.++..++.. ...+|+|+|+|+.+++.|+++......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 36789999999999998777665 245899999999999999976322111
Q ss_pred ----EEEEcCC----CCCCCCCCCccEEEecCcccccC----CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH
Q 019479 163 ----TIIEGDA----EDLPFPTDYADRYVSAGSIEYWP----DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230 (340)
Q Consensus 163 ----~~~~~d~----~~~~~~~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 230 (340)
.....+. ...+++.++||+|++..++||+. +...+++++.++|||||++++.+......... .....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-~~~~~ 207 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-GKREF 207 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE-TTEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee-ccccc
Confidence 1111122 22356778999999999999985 45579999999999999999987654322110 01111
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
....++.+++.++|++|||+++++......
T Consensus 208 ~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~ 237 (257)
T d2a14a1 208 SCVALEKGEVEQAVLDAGFDIEQLLHSPQS 237 (257)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 223568999999999999999998776544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=1.4e-18 Score=151.00 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=110.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC-CCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF-PTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~-~~~~fD~v~~~~ 186 (340)
+++.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++.. ..++.+.++|+...++ ..++||+|++..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 47899999999999999999887 34689999999999999997632 2368899999976654 466899999999
Q ss_pred cccccCC----HHHHHHHHHHhcccCcEEEEEccCCCchhHh---------------------------h-------Hhh
Q 019479 187 SIEYWPD----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLS---------------------------R-------FFA 228 (340)
Q Consensus 187 ~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------------------~-------~~~ 228 (340)
++||+.+ ...+++++.++|||||++++..+........ . ...
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 181 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 181 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccccc
Confidence 9999743 3478999999999999998865432110000 0 000
Q ss_pred hHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 229 DVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.....+.+.+.+.++++++||+.++...+..
T Consensus 182 ~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~ 212 (252)
T d1ri5a_ 182 NCIEYFVDFTRMVDGFKRLGLSLVERKGFID 212 (252)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHH
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEecHHH
Confidence 0011134578999999999999988877643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.6e-18 Score=149.92 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=110.0
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHh----CCC--ceEEEEeCCHHHHHHHHHhCC-C---CCcE--EEEcCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKH----VDA--KNVTILDQSPHQLAKAKQKEP-L---KECT--IIEGDAE 170 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~--~~v~g~D~s~~~~~~a~~~~~-~---~~i~--~~~~d~~ 170 (340)
.++......++..+|||||||+|.++..+++. +++ .+++|+|+|+.|++.++++.. . .++. +...+++
T Consensus 30 ~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 109 (280)
T d1jqea_ 30 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSS 109 (280)
T ss_dssp HHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHH
T ss_pred HHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 34444443345568999999999998877654 333 478999999999999998732 2 3333 3444433
Q ss_pred C------CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH--------hhcCCC
Q 019479 171 D------LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV--------WMLFPK 236 (340)
Q Consensus 171 ~------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~ 236 (340)
+ .+.++++||+|++.+++||++|+..++++++++|||||.+++........+.. .+... +..+.+
T Consensus 110 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ 188 (280)
T d1jqea_ 110 EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDK-LWKKYGSRFPQDDLCQYIT 188 (280)
T ss_dssp HHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHH-HHHHHGGGSCCCTTSCCCC
T ss_pred hhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHH-HHHHHHHhcCCCcccccCC
Confidence 2 24567899999999999999999999999999999999999887655543322 11222 223568
Q ss_pred HHHHHHHHHHCCCcEEEE
Q 019479 237 EEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~ 254 (340)
.+++.++|++.||..+..
T Consensus 189 ~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 189 SDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 899999999999986543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.2e-18 Score=149.15 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|+++. +++++.++|+.++|+++++||+|++.+++++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc--ccccceeeehhhccCCCCCEEEEeecCCHHH-
Confidence 3678999999999999999999988999999999999999999875 5799999999999999999999999988876
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
++++.|+|||||++++..+....
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred ------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 57899999999999999876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.6e-18 Score=150.16 Aligned_cols=145 Identities=20% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC------------------------------
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE------------------------------ 161 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~------------------------------ 161 (340)
.++.+|||||||+|.++...+... ..+|+|+|+|+.|++.++++.....
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 368899999999998876555443 4689999999999999987632211
Q ss_pred ---cEEEEcCCCC------CCCCCCCccEEEecCcccccC----CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhh
Q 019479 162 ---CTIIEGDAED------LPFPTDYADRYVSAGSIEYWP----DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228 (340)
Q Consensus 162 ---i~~~~~d~~~------~~~~~~~fD~v~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 228 (340)
......|+.. .+...++||+|++..++|++. +...++++++++|||||.|++.+.......... ..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~-~~ 210 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG-EA 210 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-TE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC-Cc
Confidence 1234455532 224456899999999999985 446899999999999999999876443211100 01
Q ss_pred hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 229 DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.......+.+++.++|+++||++++++...
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~ 240 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRDLRTYI 240 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 112235699999999999999998876653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.3e-17 Score=141.13 Aligned_cols=137 Identities=12% Similarity=0.003 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------------------CCCcEEEEcCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECTIIEGDAED 171 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------------------~~~i~~~~~d~~~ 171 (340)
+++.+|||+|||+|..+..+++. |.+|+|+|+|+.+++.|+++.. ..++++.++|+.+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 47889999999999999999998 8999999999999999987643 1468899999977
Q ss_pred CC-CCCCCccEEEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC
Q 019479 172 LP-FPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 172 ~~-~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 248 (340)
++ ...+.||+|+...+++++. +....++++.++|||||++++........... . .....+.+++.+++.. +
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~---g--pp~~~~~~el~~lf~~-~ 195 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP---G--PPFYVPHAEIERLFGK-I 195 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC---C--SSCCCCHHHHHHHHTT-T
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC---C--CCCCCCHHHHHHHhcC-C
Confidence 64 5567899999999999995 44589999999999999988875543221100 0 0124578999999964 6
Q ss_pred CcEEEEEE
Q 019479 249 FKDVKLKR 256 (340)
Q Consensus 249 F~~v~~~~ 256 (340)
|.+..++.
T Consensus 196 ~~i~~le~ 203 (229)
T d2bzga1 196 CNIRCLEK 203 (229)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77654443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.74 E-value=2.2e-18 Score=143.65 Aligned_cols=138 Identities=11% Similarity=0.006 Sum_probs=105.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---------------CCcEEEEcCCCCCC-CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------------KECTIIEGDAEDLP-FP 175 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---------------~~i~~~~~d~~~~~-~~ 175 (340)
+++.+|||+|||+|.++..++++ |.+|+|+|+|+.|++.|+++... .++++.++|+.+++ ..
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 47899999999999999999998 89999999999999999987432 34678899998765 33
Q ss_pred CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 176 TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
...||+|++..+++++.+. ...++++.++|||||++++........... .. ....+.+++++++. .+|++..
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~---~p--~~~~~~~el~~l~~-~~~~i~~ 170 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE---GP--PFSVPQTWLHRVMS-GNWEVTK 170 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS---SC--CCCCCHHHHHHTSC-SSEEEEE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC---Cc--cccCCHHHHHHHhC-CCcEEEE
Confidence 4679999999999999753 589999999999999988765443221110 00 11346777877764 6777655
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
+...
T Consensus 171 ~~~~ 174 (201)
T d1pjza_ 171 VGGQ 174 (201)
T ss_dssp EEES
T ss_pred EEEe
Confidence 5544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1.8e-17 Score=143.15 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=100.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|+++.. .-++++.++|+.+ .++.++||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 47899999999999999988775 6899999999999999997632 2346788888865 34567899999875544
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+++++.++|||||++++++.... ..+++.+.++++||++++....+
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~~----------------~~~~v~~~~~~~Gf~~~~~~~~~ 245 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHHTTCEEEEEEEET
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecchh----------------hHHHHHHHHHHCCCEEEEEEEEC
Confidence 345788999999999999998754321 35778889999999998877654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-18 Score=147.24 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=106.1
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCC--
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAED-- 171 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~-- 171 (340)
|...+...+..... .++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... .++.++.+|+..
T Consensus 38 w~~~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 38 WETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 114 (229)
T ss_dssp GGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence 44444444433333 368899999999999999998873 46899999999999999988543 346777777643
Q ss_pred CCCCCCCccEEE-----ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc--CCCHHHHHHHH
Q 019479 172 LPFPTDYADRYV-----SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML--FPKEEEYIEWF 244 (340)
Q Consensus 172 ~~~~~~~fD~v~-----~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 244 (340)
.++++++||.|+ +...++|+.+...++++++|+|||||++++.+... ........+.. ....+.+...+
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 190 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS----WGELMKSKYSDITIMFEETQVPAL 190 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH----HHHHTTTTCSCHHHHHHHHTHHHH
T ss_pred cccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCC----cchhhhhhhhhcchhhhhHHHHHH
Confidence 346778899887 46777888889999999999999999998753211 11110000000 00134556778
Q ss_pred HHCCCcEEEEE
Q 019479 245 QKAGFKDVKLK 255 (340)
Q Consensus 245 ~~aGF~~v~~~ 255 (340)
.++||+..++.
T Consensus 191 ~~agF~~~~i~ 201 (229)
T d1zx0a1 191 LEAGFRRENIR 201 (229)
T ss_dssp HHTTCCGGGEE
T ss_pred HHCCCeeEEEE
Confidence 89999865544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=5.5e-17 Score=134.17 Aligned_cols=136 Identities=26% Similarity=0.292 Sum_probs=108.8
Q ss_pred CCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCC
Q 019479 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDA 169 (340)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~ 169 (340)
++..+.++..++..+.. .++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++. . .+|++++++|+
T Consensus 15 ~~t~~eir~~il~~l~~-~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda 91 (186)
T d1l3ia_ 15 GPTAMEVRCLIMCLAEP-GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA 91 (186)
T ss_dssp CCCCHHHHHHHHHHHCC-CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred CCChHHHHHHHHHhcCC-CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch
Confidence 44566777777777665 58999999999999999999886 579999999999999999873 2 25899999999
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 170 ~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
.+.....+.||+|++....+ +...+++++.+.|||||++++...... +...+.+.+++.||
T Consensus 92 ~~~~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~e----------------~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 92 PEALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE----------------TKFEAMECLRDLGF 152 (186)
T ss_dssp HHHHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH----------------HHHHHHHHHHHTTC
T ss_pred hhcccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeeccc----------------cHHHHHHHHHHcCC
Confidence 87666778899999987665 456889999999999999987753221 23456678888888
Q ss_pred cE
Q 019479 250 KD 251 (340)
Q Consensus 250 ~~ 251 (340)
..
T Consensus 153 ~~ 154 (186)
T d1l3ia_ 153 DV 154 (186)
T ss_dssp CC
T ss_pred Ce
Confidence 53
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=8.1e-17 Score=140.09 Aligned_cols=167 Identities=21% Similarity=0.213 Sum_probs=133.1
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
..+|.-+..+||+..-.+-..++.|++.++.+++..+.... ..+.+|||+|||+|..+..++...|..+|+++|+|+.
T Consensus 66 PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~ 143 (274)
T d2b3ta1 66 PIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD 143 (274)
T ss_dssp CHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH
T ss_pred ChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhH
Confidence 45666777788888788888899999999999888777554 3678999999999999999999999999999999999
Q ss_pred HHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC-------------------------HHHHHHH
Q 019479 149 QLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD-------------------------PQRGIKE 200 (340)
Q Consensus 149 ~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d-------------------------~~~~l~~ 200 (340)
+++.|+++ ....|++++++|+.+ ++++++||+|+++--.....+ ...++++
T Consensus 144 Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~ 222 (274)
T d2b3ta1 144 AVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ 222 (274)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH
T ss_pred HHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH
Confidence 99999987 334679999999976 445678999999744322111 1257888
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+.+.|+|||.+++.... ...+.+.+++++.||..+++.
T Consensus 223 a~~~L~~~G~l~lEig~-----------------~q~~~v~~~l~~~gf~~i~~~ 260 (274)
T d2b3ta1 223 SRNALVSGGFLLLEHGW-----------------QQGEAVRQAFILAGYHDVETC 260 (274)
T ss_dssp HGGGEEEEEEEEEECCS-----------------SCHHHHHHHHHHTTCTTCCEE
T ss_pred HHHhcCCCCEEEEEECc-----------------hHHHHHHHHHHHCCCCeEEEE
Confidence 89999999999886321 135778899999999866543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=3.6e-17 Score=137.49 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=100.6
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCCCCccEEE-ecCcc
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPTDYADRYV-SAGSI 188 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~~~fD~v~-~~~~l 188 (340)
.+++.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.++++. ...|+.++.+|....+.....+|.+. +...+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 36899999999999999999999988889999999999999998773 23689999999987554444443332 23456
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCc---hhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT---FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.|..+...+++++.++|||||++++....... ...... .+...+.+ ++||++++...+.+
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~----------~~~~~~~l-~~gf~i~E~i~L~P 196 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEV----------FKSVLKEM-EGDFKIVKHGSLMP 196 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHH----------HHHHHHHH-HTTSEEEEEEECTT
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHH----------HHHHHHHH-HcCCEEEEEEccCC
Confidence 67778889999999999999999887521100 000000 11222333 47999999888764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=5.6e-17 Score=140.23 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=110.8
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC------CCCCcEEEEcCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE------PLKECTIIEGDAEDLP 173 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~------~~~~i~~~~~d~~~~~ 173 (340)
...++..+.. .++.+|||+|||+|.++..+++.. |.++|+++|+++++++.|+++. ...|+.++++|+.+.+
T Consensus 85 ~s~Ii~~l~i-~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGDI-FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhCC-CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 4445555555 589999999999999999999985 6789999999999999999762 2468999999998888
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH-HHCCCcEE
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF-QKAGFKDV 252 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~v 252 (340)
+++++||.|++ +++++..++.++.++|||||++++..++..+ .....+.+ ++.||..+
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q----------------v~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ----------------LSRIVEALRAKQCWTEP 222 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHH----------------HHHHHHHHHHHSSBCCC
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccCh----------------HHHHHHHHHHcCCeecc
Confidence 88999999986 7899999999999999999999888765322 22333444 46789988
Q ss_pred EEEEeCC
Q 019479 253 KLKRIGP 259 (340)
Q Consensus 253 ~~~~~~~ 259 (340)
++.++-.
T Consensus 223 ~~~E~l~ 229 (264)
T d1i9ga_ 223 RAWETLQ 229 (264)
T ss_dssp EEECCCC
T ss_pred eEEEEEE
Confidence 7776643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=1.1e-16 Score=137.55 Aligned_cols=132 Identities=17% Similarity=0.292 Sum_probs=105.3
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCC
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~ 178 (340)
++..+.+ .++.+|||+|||+|.++..+++.. |..+|+++|.++++++.|+++. ...|+++..+|+.+. ++++.
T Consensus 77 Ii~~l~i-~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 77 IIMRCGL-RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp ----CCC-CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHcCC-CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 3444554 589999999999999999999874 5689999999999999999873 346899999999875 46778
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
||.|++ +++++..+++++.++|||||++++..+... ..++..+.++++||..+++.+.-
T Consensus 155 fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~----------------Qv~~~~~~l~~~gf~~i~~~E~~ 213 (250)
T d1yb2a1 155 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------QSEKTVLSLSASGMHHLETVELM 213 (250)
T ss_dssp EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------HHHHHHHHSGGGTEEEEEEEEEE
T ss_pred eeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcC----------------hHHHHHHHHHHCCCceeEEEEEE
Confidence 999987 578888999999999999999988765421 13455567788999988877653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=6.8e-16 Score=134.09 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=108.2
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFP 175 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~ 175 (340)
...++..+.+ .++.+|||+|||+|..+..+++.. |+++|+++|.++++++.|+++. . ..++.+...|+.. .+.
T Consensus 92 ~~~Ii~~l~i-~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~ 169 (266)
T d1o54a_ 92 SSFIAMMLDV-KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFD 169 (266)
T ss_dssp HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCS
T ss_pred HHHHHHhhCC-CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-ccc
Confidence 3444555555 589999999999999999999886 5789999999999999999873 2 3568888888754 345
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
...||.|+. +++++..+++++.++|||||++++..+... ..++..+.+++.||..+++.
T Consensus 170 ~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~----------------Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 170 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEE
T ss_pred ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc----------------HHHHHHHHHHHCCceeEEEE
Confidence 677998875 788999999999999999999998765421 23566678899999998888
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
+.-
T Consensus 229 E~l 231 (266)
T d1o54a_ 229 ESL 231 (266)
T ss_dssp CCC
T ss_pred EEE
Confidence 754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.63 E-value=8.5e-16 Score=127.76 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++. ...++++..+|+.+ ++++++||+|+++.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~ 127 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc
Confidence 47899999999999999999887 568999999999999999752 23458999999976 55678999999999
Q ss_pred cccccCCH-HHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDP-QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++|+..+. +.+++++.++|||||++++...
T Consensus 128 p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 128 PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 98877654 6789999999999999987643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.3e-15 Score=128.43 Aligned_cols=109 Identities=23% Similarity=0.278 Sum_probs=91.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~ 174 (340)
.+...+++.+.. +++.+|||||||+|..+..+++.+ +..+|+++|+++.+++.|+++ ....|+.++++|..+.+.
T Consensus 62 ~~~a~~l~~l~l-~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred hhhHHHHHhhhc-cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 345556666665 589999999999999999999876 457999999999999999987 345788999999987766
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.+++||+|++..++++++ +++.+.|||||+|++.
T Consensus 141 ~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred cccchhhhhhhccHHHhH------HHHHHhcCCCcEEEEE
Confidence 778899999999999886 3567889999999875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.3e-15 Score=127.14 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=89.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
....|||||||+|.++..+++.+|+..++|+|+++.++..|.++ ....|+.++++|+..+. ++++++|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 34579999999999999999999999999999999999998765 45579999999997754 77899999999887
Q ss_pred ccccCCH--------HHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDP--------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.... ..+++++.++|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7766543 379999999999999998874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.4e-15 Score=132.93 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=102.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--------------CCCcEEEE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------------LKECTIIE 166 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--------------~~~i~~~~ 166 (340)
..++..+.+ .+|.+|||+|||+|.++..+++.. |.++|+++|+++++++.|+++.. ..|+++..
T Consensus 88 ~~Il~~l~i-~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 88 NMILSMMDI-NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHTC-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhCC-CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 444555555 589999999999999999999975 56899999999999999987531 25799999
Q ss_pred cCCCCCC--CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH
Q 019479 167 GDAEDLP--FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 167 ~d~~~~~--~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (340)
+|+.+.. +.+..||.|++ +++++..++.++.++|||||+|++..++..+ .....+.|
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Q----------------v~~~~~~l 225 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNITQ----------------VIELLDGI 225 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSHHH----------------HHHHHHHH
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCHHH----------------HHHHHHHH
Confidence 9997653 45678999987 6778888999999999999999887654211 23344455
Q ss_pred HH--CCCcEEEEEEeCC
Q 019479 245 QK--AGFKDVKLKRIGP 259 (340)
Q Consensus 245 ~~--aGF~~v~~~~~~~ 259 (340)
++ .||..+++.++..
T Consensus 226 ~~~~~~f~~i~~~E~~~ 242 (324)
T d2b25a1 226 RTCELALSCEKISEVIV 242 (324)
T ss_dssp HHHTCCEEEEEEECCCC
T ss_pred HHcCCCceeeEEEEEEe
Confidence 53 4788888877753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.4e-15 Score=135.02 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=95.9
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh------------CCCCCcEE
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK------------EPLKECTI 164 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~------------~~~~~i~~ 164 (340)
.......+++...+ +++.+|||||||+|..+..+++.++..+++|+|+|+.+++.|++. ....++++
T Consensus 136 ~~~~~~~~~~~~~l-~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~ 214 (328)
T d1nw3a_ 136 SFDLVAQMIDEIKM-TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214 (328)
T ss_dssp CHHHHHHHHHHSCC-CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHHHHHHHcCC-CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 44556667777665 578999999999999999999988778999999999999998764 13467999
Q ss_pred EEcCCCCCCCCCCCc--cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 165 IEGDAEDLPFPTDYA--DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 165 ~~~d~~~~~~~~~~f--D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+++|+.+.++.+..+ |+|+++ .+.+.++....|.++.+.|||||++++....
T Consensus 215 ~~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 215 ERGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp EECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 999998877655444 566664 4556778889999999999999999887643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=3.6e-14 Score=120.09 Aligned_cols=138 Identities=16% Similarity=0.033 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCC---CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDL---PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~---~~~~~~fD~v~~~~ 186 (340)
++|.+|||+|||+|..+..+++.. |.++|+|+|+++.+++.++++.. ..++..+..|.... +.....+|+|++
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-- 149 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-- 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE--
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE--
Confidence 689999999999999999999987 56899999999999999998743 46788888888542 334567888876
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.+.+..+...+++++.+.|||||++++............. .. ..++.. .+.+.||++++...+.+
T Consensus 150 d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~-~~------v~~~v~-~l~~~gf~iie~i~L~p 214 (227)
T d1g8aa_ 150 DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP-EQ------VFREVE-RELSEYFEVIERLNLEP 214 (227)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH-HH------HHHHHH-HHHHTTSEEEEEEECTT
T ss_pred EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH-HH------HHHHHH-HHHHcCCEEEEEEcCCC
Confidence 3556667788999999999999999886432110000000 00 012223 34567999999888754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=9.1e-16 Score=135.80 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=78.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-------CCcEEEEcCCCCCC---CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------KECTIIEGDAEDLP---FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~i~~~~~d~~~~~---~~~~~fD~v 182 (340)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++... .+..+...++..++ ...++||+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 5679999999999999999997 78999999999999999876321 12344555553211 134679999
Q ss_pred Eec-CcccccCC-------HHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSA-GSIEYWPD-------PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~-~~l~~~~d-------~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++. .+++|+++ ...+|++++++|||||+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 875 58888865 3479999999999999998853
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.55 E-value=2.2e-14 Score=119.55 Aligned_cols=103 Identities=22% Similarity=0.173 Sum_probs=86.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
....|||||||+|.++..+|+.+|...++|+|+++.++..|.++ ...+|+.++.+|+.++. +++.++|.|++.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 34579999999999999999999999999999999999988765 34579999999997754 67889999998665
Q ss_pred ccccCCH--------HHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDP--------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-.+.... ..+|+.+.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4433322 478999999999999998864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.53 E-value=3.1e-14 Score=120.06 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=87.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-CCCCCcEEEEcCCCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-~~~~~i~~~~~d~~~~~~~~~~ 178 (340)
+...+++.+.. +++.+|||||||+|..+..+++. ..+|+++|.++.+++.|+++ ....|+.++.+|...-....++
T Consensus 58 ~~a~ml~~L~l-~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p 134 (224)
T d1vbfa_ 58 LGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (224)
T ss_dssp HHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred hHHHHHHHhhh-cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence 34445555554 58999999999999999998887 67999999999999999987 4457899999998664445678
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
||.|++..++.+++ ..+.+.|||||+|++.
T Consensus 135 fD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 99999999988876 4567889999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.1e-14 Score=121.57 Aligned_cols=110 Identities=19% Similarity=0.172 Sum_probs=88.8
Q ss_pred HHHHhccccC-CCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCC
Q 019479 100 MRDEALEPAD-LFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDA 169 (340)
Q Consensus 100 ~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~ 169 (340)
+...+++.+. ..+++.+|||||||+|..+..+++.. +..+|+++|.++++++.|+++.. ..++.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 3344444432 23589999999999999999988864 46799999999999999987632 35788999999
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 170 ~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+...++||.|++..++++++ .++.+.|||||+|++..
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence 87777788999999999999876 45788999999998853
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=3.2e-14 Score=127.71 Aligned_cols=98 Identities=27% Similarity=0.270 Sum_probs=80.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++++|||||||+|.++..++++ +..+|+++|.|+ +++.|++. ....+++++++|+.++++++++||+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 6899999999999999988876 346999999986 55566543 33467999999999999889999999997666
Q ss_pred ccc---CCHHHHHHHHHHhcccCcEEE
Q 019479 189 EYW---PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 189 ~~~---~d~~~~l~~~~~~LkpgG~l~ 212 (340)
+++ .....++..+.++|||||+++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 544 456788999999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.2e-14 Score=123.79 Aligned_cols=114 Identities=25% Similarity=0.258 Sum_probs=87.3
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH---hCCCCCcEEEEcCCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDLP 173 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~---~~~~~~i~~~~~d~~~~~ 173 (340)
...+...+...... .++++|||||||+|.++..+++. +..+|+++|.|+.+...++. +....++.++.+|+++++
T Consensus 20 ~~~y~~ai~~~~~~-~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~ 97 (311)
T d2fyta1 20 TESYRDFIYQNPHI-FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH 97 (311)
T ss_dssp HHHHHHHHHHCGGG-TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHHHhcccc-CCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc
Confidence 33444444444443 37899999999999999998887 34689999999987644332 233467999999999998
Q ss_pred CCCCCccEEEecCcccccCC---HHHHHHHHHHhcccCcEEE
Q 019479 174 FPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~ 212 (340)
++.++||+|++....++... ...++....+.|||||+++
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 88899999999777766543 3467777889999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=9.6e-14 Score=123.91 Aligned_cols=98 Identities=22% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++++|||||||+|.++..+++. +..+|+++|.|+.+ ..+++. ....+++++++|+.+++++.++||+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 6899999999999999988886 34689999999865 333332 23467999999999999888999999987766
Q ss_pred ccc---CCHHHHHHHHHHhcccCcEEE
Q 019479 189 EYW---PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 189 ~~~---~d~~~~l~~~~~~LkpgG~l~ 212 (340)
+++ .....++..+.+.|||||.++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 655 355789999999999999986
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.40 E-value=6.7e-13 Score=111.04 Aligned_cols=108 Identities=27% Similarity=0.364 Sum_probs=89.8
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~ 175 (340)
.+...+++.+.. +++.+|||||||+|..+..+++.. +.+|+++|.++.+++.|+++ ....|+.++++|...-...
T Consensus 65 ~~~a~ml~~L~l-~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 65 HMVAIMLEIANL-KPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHHTC-CTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hhHHHHHHhhcc-CccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 344556666665 589999999999999999998875 57899999999999999976 4568999999999775556
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.++||.|++..++.++++ .+.+.|||||+|++.
T Consensus 143 ~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence 788999999999988763 467789999999875
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=4.5e-13 Score=122.04 Aligned_cols=119 Identities=10% Similarity=0.101 Sum_probs=89.3
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------------CCCcEE
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECTI 164 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------------~~~i~~ 164 (340)
.......+++.+.+ +++.+|||||||+|..+..++..++..+|+|+|+|+.+++.|+++.. ...+.+
T Consensus 201 ~~~~i~~Il~~l~L-kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 201 LPNFLSDVYQQCQL-KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp CHHHHHHHHHHTTC-CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred CHHHHHHHHHHhCC-CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 44567777777766 58999999999999999999999877799999999999999986531 112233
Q ss_pred -EEcCCCCCCC---CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 165 -IEGDAEDLPF---PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 165 -~~~d~~~~~~---~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..+++...+. .-..+|+|+++. +++.++....|+++.+.|||||++++.+..
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred eeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 3455543221 113468888764 556778889999999999999999887643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=3.9e-12 Score=109.72 Aligned_cols=126 Identities=18% Similarity=0.156 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++. +.++|+++|+++.+++.++++. + .++++++++|+.++. ..+.||.|++...
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p 183 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 183 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC
Confidence 57999999999999999999987 4579999999999999999773 2 245899999998865 4567999997532
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.....++.++.+.|++||++.+......... .....+.+.+..+..||.+..
T Consensus 184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~----------~~~~~e~~~~~~~~~g~~v~~ 235 (260)
T d2frna1 184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM----------PREPFETFKRITKEYGYDVEK 235 (260)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT----------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----CchHHHHHHHHhhcCCCCEEEEEeccccccc----------hhhHHHHHHHHHHHcCCceEE
Confidence 2334678889999999999876543221110 012356677888899998643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=2.2e-12 Score=108.62 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=86.5
Q ss_pred HHHHhccccC-CCCCCCEEEEEcCccchHHHHHHHhC------CCceEEEEeCCHHHHHHHHHhC--------CCCCcEE
Q 019479 100 MRDEALEPAD-LFDRNMRVVDVGGGTGFTTLGIVKHV------DAKNVTILDQSPHQLAKAKQKE--------PLKECTI 164 (340)
Q Consensus 100 ~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~~v~g~D~s~~~~~~a~~~~--------~~~~i~~ 164 (340)
+...+++.+. ..+++.+|||||||+|..+..+++.. +..+|+++|.++++++.|+++. ...|+.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 3444455441 23589999999999999998888763 2358999999999999998763 2358999
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 165 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+.+|..+...+.++||.|++..++.+++ ..+.+.|||||++++.
T Consensus 146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 146 VEGDGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp EESCGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEE
T ss_pred EecccccccccccceeeEEEEeechhch------HHHHHhcCCCcEEEEE
Confidence 9999977666677899999999998876 3567899999999875
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=2.7e-12 Score=105.41 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=91.9
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP----- 173 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~----- 173 (340)
..++++.+.. .++..+||++||+|..+..+++.+|+++|+|+|.++.+++.|+++.. ..++.++++++.++.
T Consensus 12 l~evi~~l~~-~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLKP-EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHCC-CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhCC-CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 3444444443 47889999999999999999999999999999999999999998854 357999999987642
Q ss_pred CCCCCccEEEecCccc---------ccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 174 FPTDYADRYVSAGSIE---------YWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~---------~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+..++||.|+....+. .+......|..+.++|+|||+++++...
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 4467899999865542 2223347899999999999999988653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=5.3e-12 Score=109.00 Aligned_cols=162 Identities=18% Similarity=0.098 Sum_probs=117.2
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
..+|.-+..+||+..-.+-..++.|++.++.+.+.++..... ....+|+|+|||+|..+..+++ .|..+|+++|+|+.
T Consensus 67 Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~-~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~ 144 (271)
T d1nv8a_ 67 PLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRK-YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSK 144 (271)
T ss_dssp CHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHH-HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHH
T ss_pred ChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhhcc-ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhh
Confidence 456677777888887788888999999999998888776543 2456899999999999999886 48899999999999
Q ss_pred HHHHHHHhC---C-CCCcEEEEcCCCCC-CCCCCCccEEEecCcccc----cC-----CHH----------HHHHH-HHH
Q 019479 149 QLAKAKQKE---P-LKECTIIEGDAEDL-PFPTDYADRYVSAGSIEY----WP-----DPQ----------RGIKE-AYR 203 (340)
Q Consensus 149 ~~~~a~~~~---~-~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l~~----~~-----d~~----------~~l~~-~~~ 203 (340)
+++.|++++ . ..++.+..+|+.+. +...++||+|+++--.-. .+ +|. .++++ +.+
T Consensus 145 Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~ 224 (271)
T d1nv8a_ 145 AVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGR 224 (271)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHH
Confidence 999999873 2 24567788888653 333468999999732210 00 111 23333 457
Q ss_pred hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 204 VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 204 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
.|+|||++++.... . ..+.+.+++++.||
T Consensus 225 ~L~~~G~l~~Eig~-~----------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 225 YDTSGKIVLMEIGE-D----------------QVEELKKIVSDTVF 253 (271)
T ss_dssp CCCTTCEEEEECCT-T----------------CHHHHTTTSTTCEE
T ss_pred hcCCCCEEEEEECH-H----------------HHHHHHHHHHhCCE
Confidence 89999998776432 1 24556667777777
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.24 E-value=7.6e-12 Score=111.20 Aligned_cols=129 Identities=22% Similarity=0.111 Sum_probs=93.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC----CCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL----PFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~ 185 (340)
++++|||++||+|.++..++.. +.+|+++|+|+.+++.|+++ ....+++++++|..++ ....++||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 6889999999999999998865 68999999999999999977 3446789999998652 3345789999985
Q ss_pred Cccccc---------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHH----HHHHHHHHCCCcEE
Q 019479 186 GSIEYW---------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE----EYIEWFQKAGFKDV 252 (340)
Q Consensus 186 ~~l~~~---------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~aGF~~v 252 (340)
--.... .+...++..+.++|||||.|++...... .+.+ .+.+.+.++|-+..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~---------------~~~~~f~~~v~~a~~~a~~~~~ 287 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH---------------MTEPLFYAMVAEAAQDAHRLLR 287 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT---------------SCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 332211 1223678899999999999988765432 1233 34445667786655
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
.+...+
T Consensus 288 ~~~~~~ 293 (318)
T d1wxxa2 288 VVEKRG 293 (318)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 454444
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.5e-10 Score=97.68 Aligned_cols=164 Identities=10% Similarity=-0.068 Sum_probs=102.6
Q ss_pred hhhhhhhhhhhcccCCCCchH----HHHHHhccccC-CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH
Q 019479 78 WFYRFLSIVYDHVINPGHWTE----DMRDEALEPAD-LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~ 152 (340)
.||+....+....+.|+..++ .....++.... ...+..+|||+|||+|..+..++.+.|+.+++|+|+|+.+++.
T Consensus 21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~ 100 (250)
T d2h00a1 21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 100 (250)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHH
Confidence 455544455566667763332 22233332221 1234579999999999999999999899999999999999999
Q ss_pred HHHhCC----CCCcEEEEcCCCCC------CCCCCCccEEEecCcccccCCHH---------------------------
Q 019479 153 AKQKEP----LKECTIIEGDAEDL------PFPTDYADRYVSAGSIEYWPDPQ--------------------------- 195 (340)
Q Consensus 153 a~~~~~----~~~i~~~~~d~~~~------~~~~~~fD~v~~~~~l~~~~d~~--------------------------- 195 (340)
|+++.. ..++.++..+.... ...+++||+|+|+--++...+..
T Consensus 101 A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~ 180 (250)
T d2h00a1 101 AKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE 180 (250)
T ss_dssp HHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHH
T ss_pred HHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccc
Confidence 998732 34577776655331 12356799999987776432211
Q ss_pred --------HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 196 --------RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 196 --------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.++++..+.++..|++..... ...+.+++.+.|++.||..+++.+.
T Consensus 181 gGe~~F~~~ii~es~~~~~~~g~~t~~ig----------------~~~~l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 181 GGELEFVKRIIHDSLQLKKRLRWYSCMLG----------------KKCSLAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp HTHHHHHHHHHHHHHHHGGGBSCEEEEES----------------STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHhhcCcEEEEEec----------------chhhHHHHHHHHHHcCCCeEEEEEe
Confidence 122333334444444322211 0235678899999999998877766
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.17 E-value=3.1e-11 Score=107.54 Aligned_cols=106 Identities=20% Similarity=0.062 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCC----CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDL----PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~----~~~~~~fD~v~ 183 (340)
.++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++. + ..+++++++|+.+. +....+||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 47899999999999999999887 3468999999999999999873 2 24688999998642 23467899999
Q ss_pred ecCccccc--C-------CHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 184 SAGSIEYW--P-------DPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 184 ~~~~l~~~--~-------d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+.--.... . +...++..+.++|||||+|+......
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 85332211 1 12357888899999999998876543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.12 E-value=3.2e-11 Score=95.47 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=76.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~ 187 (340)
.+.+|||+|||+|.++..++.+ ...+|+++|.++.+++.++++.. ..+++++++|+.. +....++||+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHh-CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 6899999999999999998887 33699999999999999987732 2458999999865 3345678999998533
Q ss_pred ccccCCHHHHHHHHH--HhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAY--RVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~--~~LkpgG~l~i~~ 215 (340)
.. .......+..+. +.|+|||.+++..
T Consensus 93 y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA-KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc-cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 21 112235566554 4699999998764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.10 E-value=1.2e-10 Score=95.67 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=60.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.|++|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++. .+++++++|+.++ +++||+|+++--+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC--GGVNFMVADVSEI---SGKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC--TTSEEEECCGGGC---CCCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc--ccccEEEEehhhc---CCcceEEEeCccc
Confidence 6899999999999999887776 3468999999999999999876 4789999999875 3679999997554
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.10 E-value=1.3e-10 Score=95.55 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=74.4
Q ss_pred CCCEEEEEcCccchHH----HHHHHhC----CCceEEEEeCCHHHHHHHHHhC---------------------CC----
Q 019479 113 RNMRVVDVGGGTGFTT----LGIVKHV----DAKNVTILDQSPHQLAKAKQKE---------------------PL---- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~----~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~---------------------~~---- 159 (340)
+..+|+++|||+|.-. +.+.+.. ...+++|+|+|+.+++.|++.. ..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 5679999999999843 3333321 1357999999999999998431 00
Q ss_pred ---------CCcEEEEcCCCCC-CCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 160 ---------KECTIIEGDAEDL-PFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+.+...+.... +.+.+.||+|+|.+++.++++. .++++++++.|+|||.|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1134455555432 2345779999999999999776 48999999999999998765
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.09 E-value=2.6e-10 Score=99.73 Aligned_cols=103 Identities=18% Similarity=0.124 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCC----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDL----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~----~~~~~~fD~v 182 (340)
.++.+|||++||+|.++..++.. +++|++||.|+.+++.|+++. ...+++|+++|+.+. .....+||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 36889999999999999998876 779999999999999999862 234689999999652 1235679999
Q ss_pred EecCc---c------ccc-CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGS---I------EYW-PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~---l------~~~-~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.-- - ..+ .+....++.+.++|+|||.+++...
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 98421 1 111 1224567788899999997666543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=8e-10 Score=91.32 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.|.+|||+|||+|.++..++.. +..+|+|+|+++.+++.++++... .+.+++.+|+.++ +++||+|+++--...
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCcccc
Confidence 6889999999999999988776 446999999999999999987543 3577888998764 467999999766543
Q ss_pred cCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 191 WPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
.... ...+.. .+.+++.++........ ..+-+..+..+.|+.+.....
T Consensus 122 ~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~---------------~~~~i~~~~~~~g~~i~~~~~ 171 (201)
T d1wy7a1 122 QRKHADRPFLLK---AFEISDVVYSIHLAKPE---------------VRRFIEKFSWEHGFVVTHRLT 171 (201)
T ss_dssp SSTTTTHHHHHH---HHHHCSEEEEEEECCHH---------------HHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccccHHHHHH---HHhhcccchhcccchHH---------------HHHHHHHHHhhcCceEEEEEE
Confidence 3211 123333 33445555544322111 123345677788987655433
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.06 E-value=1.5e-10 Score=102.44 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=79.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCC----CCCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDL----PFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~----~~~~~~fD~v~ 183 (340)
++++|||+.||+|.++..++.. +..+|+++|+|+.+++.++++. ...+++++++|+.+. .....+||+|+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 6899999999999999987775 3458999999999999999772 235789999999542 22356799999
Q ss_pred ecCccc-----c----cCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIE-----Y----WPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~-----~----~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.---. . ..+...+++.+.++|+|||.|++....
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 842211 1 123346888999999999999887643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=5e-10 Score=91.22 Aligned_cols=118 Identities=11% Similarity=0.019 Sum_probs=85.8
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC-
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED- 171 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~- 171 (340)
.+..+++.+...+...-.+.+|||++||+|.++.+++.+ +..+|+.+|.++.+++.++++ ....+++++..|+..
T Consensus 26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~ 104 (183)
T d2fpoa1 26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF 104 (183)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccc
Confidence 344445555444332226789999999999999998887 345899999999999999976 345678899999854
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHH--hcccCcEEEEEc
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYR--VLKIGGKACVIG 215 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~--~LkpgG~l~i~~ 215 (340)
+.....+||+|++.--... ......+..+.+ .|+++|.+++..
T Consensus 105 l~~~~~~fDlIf~DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 105 LAQKGTPHNIVFVDPPFRR-GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HSSCCCCEEEEEECCSSST-TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccccccccCEEEEcCcccc-chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3345678999999755432 344567777665 599999998864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=2.2e-10 Score=92.33 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCC----CCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAED----LPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~----~~~~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|.++..++.+ +.+++++|.++.+++.+++++.. -+.++...+... ......+||+|++.
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 46889999999999999998887 77999999999999999877321 122344444422 12345679999986
Q ss_pred CcccccCCHHHHHHHHH--HhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAY--RVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~--~~LkpgG~l~i~~~ 216 (340)
--++. +....+.++. ..|+|||.+++...
T Consensus 118 PPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PPYAM--DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred ccccc--CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 44332 2233444443 46999999887643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=7.1e-10 Score=92.50 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCC-C-----CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDL-P-----FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~-~-----~~~~~fD~ 181 (340)
++++|||||||+|..+..+++.++ +++++++|.++.+.+.|+++. . .++++++.+|..+. + ...++||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 678999999999999999999874 589999999999999998663 2 25699999998552 2 34567999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|++.+.-.. ......+.++.+.|||||.+++-+.
T Consensus 136 ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 136 VFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeecccccc-cccHHHHHHHhCccCCCcEEEEeCc
Confidence 998632111 1122357778899999998765443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.92 E-value=2e-09 Score=87.44 Aligned_cols=120 Identities=9% Similarity=0.019 Sum_probs=88.9
Q ss_pred CCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCC
Q 019479 94 GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDA 169 (340)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~ 169 (340)
++.+..+++.+...+.....+.+|||++||+|.++.+++.+ +..+|+++|.++.+++.++++. ...+++++++|+
T Consensus 22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~ 100 (182)
T d2fhpa1 22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA 100 (182)
T ss_dssp CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence 34455666666665544347899999999999999999998 3458999999999999999763 234789999998
Q ss_pred CCC----CCCCCCccEEEecCcccccCCHHHHHHHHHH--hcccCcEEEEEc
Q 019479 170 EDL----PFPTDYADRYVSAGSIEYWPDPQRGIKEAYR--VLKIGGKACVIG 215 (340)
Q Consensus 170 ~~~----~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~--~LkpgG~l~i~~ 215 (340)
.+. .....+||+|++.--.. ..+....+..+.. .|+++|.+++..
T Consensus 101 ~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 101 NRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 642 12355799999865432 3455677777765 699999888754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2e-09 Score=89.84 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC-----CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP-----FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~-----~~~~~fD 180 (340)
.+.++|||||||+|..+..+++..+ +++++.+|.+++..+.|++.. . .++++++.+|+.+ ++ ...++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 3678999999999999999999876 689999999999999999763 2 3569999999844 21 2356899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+|+...- -.+....++.+.+.|+|||.+++-+...
T Consensus 138 ~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 138 VAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 9998532 2345578899999999999998876543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=1.3e-09 Score=95.83 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--------CCCCcEEEEcCCCCC-CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECTIIEGDAEDL-PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--------~~~~i~~~~~d~~~~-~~~~~~fD~v 182 (340)
+.+++||.||+|.|..+..+++..+..+|+++|+++++++.+++.+ ..++++++.+|..+. ...+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 3678999999999999999988766789999999999999999764 346899999999652 2345679999
Q ss_pred EecCccccc-CC------HHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYW-PD------PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~-~d------~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++...=.+. .. ..++++.+.+.|+|||.+++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 964321111 11 1478999999999999998764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.85 E-value=2e-09 Score=93.23 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------------CCCCcEEEEcCCCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------------PLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------------~~~~i~~~~~d~~~~~~~~~~ 178 (340)
+++++||.||+|.|..+..+++. +..+|+++|+++.+++.|++.. ..++++++.+|....--.+++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 46789999999999999998875 5679999999999999999753 246799999998543223577
Q ss_pred ccEEEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEc
Q 019479 179 ADRYVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~ 215 (340)
||+|++...-. .... .++++.+.+.|+|||.+++..
T Consensus 150 yDvIi~D~~~~-~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 150 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeCCCC-CCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 99999743322 2111 478999999999999998764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=2e-08 Score=82.74 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|+|+|+|.|.-+..++-.+|..+++.+|.+..-+...+ +.....|+++++..+++.. ...+||+|++..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 467999999999999999999999999999999997666555 4466689999999998865 4567999998654
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+...+++-+...++++|++++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 467789999999999999998874
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=6.8e-09 Score=90.20 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~ 183 (340)
+.+++||-||+|.|..+..+++..+..+|+++|+++.+++.+++.. ..++++++.+|... +.-..++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 3678999999999999999998766789999999999999999764 35789999999854 233456799999
Q ss_pred ecCccccc-C----CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYW-P----DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~-~----d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+...-... + -..++++.+.+.|+|||.+++....
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 75322111 1 1247999999999999999887543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=7.3e-08 Score=80.81 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCCcEEEEcCCCCCCC---CCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECTIIEGDAEDLPF---PTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~ 186 (340)
...+|+|||+|.|.-++.++-.+|..+++.+|.+..-+...+ +.....|+.+++..++++.. ..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 567999999999999999999889999999999996655544 45666899999988876432 235799999974
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccccccc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVR 266 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~ 266 (340)
+.+...++.-+...+++||.+++.-...... ..++....+...|++..++..+........+
T Consensus 150 ----va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~--------------El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r 211 (239)
T d1xdza_ 150 ----VARLSVLSELCLPLVKKNGLFVALKAASAEE--------------ELNAGKKAITTLGGELENIHSFKLPIEESDR 211 (239)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH--------------HHHHHHHHHHHTTEEEEEEEEEECTTTCCEE
T ss_pred ----hhCHHHHHHHHhhhcccCCEEEEECCCChHH--------------HHHHHHHHHHHcCCEEEEEEEEeCCCCCCCE
Confidence 4477889999999999999998874321110 1244556788899998888777543333222
Q ss_pred ccceeeeeeEEeecCCCCCCCCCCCc
Q 019479 267 RHGLIMGCSVTGVKPLSGDSPLQLGP 292 (340)
Q Consensus 267 ~~~~~~~~~~~~~kp~~~~~~l~~~~ 292 (340)
+- ..+.-.++....-|...|.
T Consensus 212 -~l----v~i~K~~~~p~~yPR~~g~ 232 (239)
T d1xdza_ 212 -NI----MVIRKIKNTPKKYPRKPGT 232 (239)
T ss_dssp -EE----EEEEECSCCCTTCSCSTTH
T ss_pred -EE----EEEEECCCCCCCCCCCCCC
Confidence 11 1245556655554444443
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.76 E-value=2.3e-08 Score=84.17 Aligned_cols=86 Identities=16% Similarity=0.287 Sum_probs=69.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~ 176 (340)
..+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++..+++. ..+|++++.+|+.+++++.
T Consensus 7 ~~i~~~iv~~~~~-~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 7 KHNIDKIMTNIRL-NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHHTTCCC-CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHHhcCC-CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 3456677777765 48999999999999999999998 689999999999999999875 4578999999998877655
Q ss_pred CCccEEEecC
Q 019479 177 DYADRYVSAG 186 (340)
Q Consensus 177 ~~fD~v~~~~ 186 (340)
.....|+++-
T Consensus 84 ~~~~~vv~NL 93 (235)
T d1qama_ 84 NQSYKIFGNI 93 (235)
T ss_dssp SCCCEEEEEC
T ss_pred cccceeeeee
Confidence 4444555443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=1.3e-08 Score=87.83 Aligned_cols=105 Identities=18% Similarity=0.104 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+++||-||.|.|..+..+++..+..+++.+|+++++++.|++.. ..++++++.+|... +...+++||+|++
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 578999999999999999998766689999999999999998763 35789999999854 2234578999997
Q ss_pred cCcccccC----CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWP----DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~----d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...-..-. -..++++.+.+.|+|||.++.....
T Consensus 155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 53221111 1248899999999999999887543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=9.3e-09 Score=89.06 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~ 183 (340)
+.+++||-||.|.|..+..+.+..+..+++++|+++.+++.|++.. ..++++++.+|... +....++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 3678999999999999999998766789999999999999999764 35789999999854 223456899999
Q ss_pred ecCcccccCCH-----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 184 SAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 184 ~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+.. ......+ .++++.+.+.|+|||.+++........ .. ....+.+.+++. |..+......
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~--~~----------~~~~~~~tl~~~-F~~v~~y~~~ 222 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--LD----------LIKEMRQFCQSL-FPVVAYAYCT 222 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--HH----------HHHHHHHHHHHH-CSEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh--HH----------HHHHHHHHHHhc-CCeeeEEeee
Confidence 853 2211111 278999999999999998875332110 00 123334455544 7777765554
Q ss_pred Cccc
Q 019479 259 PKWY 262 (340)
Q Consensus 259 ~~~~ 262 (340)
-..+
T Consensus 223 vP~~ 226 (285)
T d2o07a1 223 IPTY 226 (285)
T ss_dssp CTTS
T ss_pred eeec
Confidence 3333
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.73 E-value=3.2e-08 Score=85.87 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~--~~~~~~fD~v 182 (340)
+.+++||-||.|.|..+..+++..+..+++++|+++++++.+++.. ..++++++.+|.... ...+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 3678999999999999999998766679999999999999999764 257899999997542 2345689999
Q ss_pred EecCcccccCC----HHHHHHHHHHhcccCcEEEEEccC
Q 019479 183 VSAGSIEYWPD----PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 183 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++...-..-.. ...+++.+.+.|+|||.+++....
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 97432111111 137899999999999999988644
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=2.7e-08 Score=83.25 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC------CCCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP------FPTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~------~~~~~fD 180 (340)
++++|||||+++|..+..+++..| +++++.+|.+++..+.|++.+ . .++++++.+++.+ ++ ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 678999999999999999999876 589999999999999999763 2 3569999999954 22 1256799
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|+... +-......++.+.+.|+|||.+++-+..
T Consensus 139 ~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 139 FIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp EEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred EEEecc---chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 999853 2234568899999999999999887543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.70 E-value=1.4e-08 Score=88.68 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC-CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL-PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~-~~~~~~fD~v~ 183 (340)
+.+++||-||.|.|..+..+++..+..+|+.+|+++.+++.+++... .++++++.+|.... ....++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 36789999999999999999987556799999999999999998643 37889999998542 23456799999
Q ss_pred ecCcccccC----CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYWP----DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+...-..-+ -...+++.+.+.|+|||.++.....
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 753221111 1137899999999999999988543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.69 E-value=2.2e-08 Score=88.97 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+++.+|||.+||+|.++..+.++. +..+++|+|+++.+++.|+.+. ...+..+..+|..... ...+||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccccc
Confidence 467899999999999998887643 2358999999999999998652 2345667777765432 4568999999
Q ss_pred cCcccccCCH------------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 185 AGSIEYWPDP------------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 185 ~~~l~~~~d~------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
+--+...... ..++..+.+.|+|||+++++.+.. +.. -...+.+++.+.+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~---~l~---------~~~~~~lR~~L~~ 262 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA---MFG---------TSDFAKVDKFIKK 262 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG---GGG---------STTHHHHHHHHHH
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc---ccc---------CchhHHHHHHHHh
Confidence 8665432221 146899999999999998876532 110 1235566776666
Q ss_pred CCCcEEEEEEeCCcccc
Q 019479 247 AGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 247 aGF~~v~~~~~~~~~~~ 263 (340)
.+ .+..+..+....+.
T Consensus 263 ~~-~i~~ii~lp~~~F~ 278 (328)
T d2f8la1 263 NG-HIEGIIKLPETLFK 278 (328)
T ss_dssp HE-EEEEEEECCGGGSC
T ss_pred CC-cEEEEEECCccccC
Confidence 53 66667777655543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=3.8e-08 Score=79.38 Aligned_cols=102 Identities=26% Similarity=0.326 Sum_probs=82.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~ 186 (340)
.++..++|..+|.|..+..+++. +.+|+|+|.++.+++.+++.. .+++.+++.++.++. ...+.+|.|+...
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~-~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH-LPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC-CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc-ccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 47889999999999999999997 679999999999999998764 478999999987643 3456799999855
Q ss_pred ccc--ccCCH-------HHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIE--YWPDP-------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~--~~~d~-------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+. +++++ ...|......|+|||++++...
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 443 22222 2578888999999999998875
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=5.2e-07 Score=80.73 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=94.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC-C
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL-P 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~-~ 173 (340)
+.+...+++.+.. .++.+|||+-||+|.++..+++. ..+|+|+|.++.+++.|+++ ....|++|+.+|.++. .
T Consensus 198 e~l~~~v~~~~~~-~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 198 QKMVARALEWLDV-QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHTC-CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred hHHHHHHHHhhcc-CCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhh
Confidence 3444555555543 46789999999999999999987 68999999999999999976 4557899999998663 2
Q ss_pred ---CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 174 ---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 174 ---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
.....+|+|++.--=.-. .+.++.+.+. +|.-.+++... +.. + ..++. .|.+.||+
T Consensus 275 ~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~~-~~~~ivYVSCn--p~T----l----------aRDl~-~l~~~gy~ 333 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIKL-EPIRIVYVSCN--PAT----L----------ARDSE-ALLKAGYT 333 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTCC---HHHHHHHHHH-CCSEEEEEESC--HHH----H----------HHHHH-HHHHTTCE
T ss_pred hhhhhhccCceEEeCCCCccH---HHHHHHHHHc-CCCEEEEEeCC--HHH----H----------HHHHH-HHHHCCCe
Confidence 234669999973211111 2466666654 66666666632 111 0 12332 45678999
Q ss_pred EEEEEEeC
Q 019479 251 DVKLKRIG 258 (340)
Q Consensus 251 ~v~~~~~~ 258 (340)
+.++..+.
T Consensus 334 l~~i~~~D 341 (358)
T d1uwva2 334 IARLAMLD 341 (358)
T ss_dssp EEEEEEEC
T ss_pred EeEEEEEe
Confidence 99888875
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.55 E-value=1.1e-07 Score=76.85 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=81.3
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CC--CCCcEEEEcCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EP--LKECTIIEGDAED 171 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~--~~~i~~~~~d~~~ 171 (340)
...+++.+...+...-.+.+|||+.||||.++.+.+.+ +..+|+.+|.+..+++..+++ .. .....+...|..+
T Consensus 27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~ 105 (183)
T d2ifta1 27 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD 105 (183)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH
T ss_pred cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhcccccccccccccccc
Confidence 33444444444432226789999999999999999988 346999999999999999876 22 2345666666533
Q ss_pred ---CCCCCCCccEEEecCcccccCCHHHHHHHHHH--hcccCcEEEEEcc
Q 019479 172 ---LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYR--VLKIGGKACVIGP 216 (340)
Q Consensus 172 ---~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~--~LkpgG~l~i~~~ 216 (340)
......+||+|++.--... ......+..+.. .|+++|.+++...
T Consensus 106 ~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 106 FLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 2234557999998655432 234567777765 6999999988643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=1.6e-07 Score=75.58 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=76.3
Q ss_pred ccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCC
Q 019479 107 PADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTD 177 (340)
Q Consensus 107 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~ 177 (340)
...+.+++.+|||+||+.|.|+..+.+..+ ...++++|+.+. ...+++.++++|+.+.. ....
T Consensus 16 k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T d1ej0a_ 16 SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------DPIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------CCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------cccCCceEeecccccchhhhhhhhhccCc
Confidence 334456889999999999999999888654 478999998552 13467899999996522 2456
Q ss_pred CccEEEecCcccccCCHH-----------HHHHHHHHhcccCcEEEEEccC
Q 019479 178 YADRYVSAGSIEYWPDPQ-----------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~-----------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
++|+|++..+.....+.. ..+.-+.++||+||.+++-...
T Consensus 88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 799999976655433331 5667778899999999887543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.53 E-value=6.5e-09 Score=88.14 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=70.5
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~~~f 179 (340)
...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++. ..+|++++++|+.+++++...+
T Consensus 18 i~kIv~~~~~-~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLNL-KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCCC-CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcCC-CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 4455555544 47889999999999999999998 689999999999999888775 3468999999999888777777
Q ss_pred cEEEecCcccccC
Q 019479 180 DRYVSAGSIEYWP 192 (340)
Q Consensus 180 D~v~~~~~l~~~~ 192 (340)
+.|+++--. ++.
T Consensus 95 ~~vv~NLPY-~Is 106 (245)
T d1yuba_ 95 YKIVGNIPY-HLS 106 (245)
T ss_dssp EEEEEECCS-SSC
T ss_pred eeEeeeeeh-hhh
Confidence 777766554 443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=1.3e-07 Score=78.61 Aligned_cols=108 Identities=18% Similarity=0.095 Sum_probs=76.6
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
.+.++..+.. +++.+|||.|||+|.++..+.+..+. ..++|+|+++..+..+ .+..++++|..... ....|
T Consensus 8 ~~~m~~l~~~-~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------~~~~~~~~~~~~~~-~~~~f 79 (223)
T d2ih2a1 8 VDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------PWAEGILADFLLWE-PGEAF 79 (223)
T ss_dssp HHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------TTEEEEESCGGGCC-CSSCE
T ss_pred HHHHHHhcCC-CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------ccceeeeeehhccc-ccccc
Confidence 3334444443 47889999999999999988876544 6799999988665433 23567788886544 45679
Q ss_pred cEEEecCcccccC----------------------------C-HHHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWP----------------------------D-PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~----------------------------d-~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|+++....... + ...++..+.+.|||||++.++.+
T Consensus 80 d~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 80 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 9999976543221 0 12557888999999999988864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=1.2e-06 Score=76.74 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-- 185 (340)
.++.+|||+++|.|.=+..++.... .+.+++.|.++.-+...+++ ....++.....|...++.....||.|++.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccc
Confidence 4789999999999999888888754 47899999999888887754 44577877778877666667789999972
Q ss_pred ----CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 ----GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 ----~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.++..-++. .++|.++.+.|||||+|+-.+..... ..+.+.+...++
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~-------------eENE~VV~~~L~ 261 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-------------EENEFVIQWALD 261 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------------GGTHHHHHHHHH
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh-------------HhHHHHHHHHHh
Confidence 222111111 16788999999999988776544321 125667777888
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
+.+|+.+.+
T Consensus 262 ~~~~~~~~~ 270 (313)
T d1ixka_ 262 NFDVELLPL 270 (313)
T ss_dssp HSSEEEECC
T ss_pred cCCCEEeec
Confidence 888776543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.27 E-value=6.9e-07 Score=74.61 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=68.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~ 184 (340)
++++|||||++.|..+..++... +.++++++|+.+....... ...++++++++|..+.. +....+|+|+.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~--~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--SDMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh--ccccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 57899999999998777666432 4689999999765433222 12368999999975432 33456898887
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-.. |+-......+ ++...|++||.+++.+.
T Consensus 158 D~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 544 4322222223 46689999999988875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=7.8e-06 Score=70.38 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC-CCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP-FPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~-- 185 (340)
.++.+|||+++|.|.=+..+++.....+++++|.++.-++..+++ .+..++.....|..... .....||.|++.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 478999999999999999999886678999999999888777755 44455555555443221 234679999972
Q ss_pred ----CcccccCCHH----------------HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 ----GSIEYWPDPQ----------------RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 ----~~l~~~~d~~----------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.++..-++.. ++|+++.+.|||||+|+-.+..... ..+.+.+...++
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~-------------~ENE~vv~~~l~ 247 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP-------------EENSLQIKAFLQ 247 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG-------------GGTHHHHHHHHH
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch-------------hhCHHHHHHHHH
Confidence 2222222221 6889999999999998776554322 125666777777
Q ss_pred H-CCCcEE
Q 019479 246 K-AGFKDV 252 (340)
Q Consensus 246 ~-aGF~~v 252 (340)
+ .+|+.+
T Consensus 248 ~~~~~~~~ 255 (284)
T d1sqga2 248 RTADAELC 255 (284)
T ss_dssp HCTTCEEC
T ss_pred hCCCcEEe
Confidence 6 456543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=6.6e-06 Score=70.33 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=66.1
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~ 174 (340)
.+...+.+.+.. .++..|||||+|.|.++..+++. +.+|+++|+++.+++..+++... .+++++.+|+...++
T Consensus 8 ~i~~kIv~~~~~-~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 8 LIINSIIDKAAL-RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHTCC-CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhCC-CCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 345555555554 46889999999999999999998 67999999999999999877432 579999999977654
Q ss_pred CCCCccEEEecCcc
Q 019479 175 PTDYADRYVSAGSI 188 (340)
Q Consensus 175 ~~~~fD~v~~~~~l 188 (340)
+ .++.|+.+--.
T Consensus 85 ~--~~~~vV~NLPY 96 (278)
T d1zq9a1 85 P--FFDTCVANLPY 96 (278)
T ss_dssp C--CCSEEEEECCG
T ss_pred h--hhhhhhcchHH
Confidence 3 34677765443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=2.1e-06 Score=72.55 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~ 173 (340)
+.+.+.+.+.. .++..|||||||+|.++..+++. +.+|+++|+++.+++..+++. ..+|++++.+|+.+++
T Consensus 9 ~~~~Iv~~~~~-~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 9 VIDSIVSAINP-QKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHCC-CTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred HHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence 44555555544 46889999999999999999987 689999999999999998763 3468999999998765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.01 E-value=7.9e-06 Score=74.58 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=96.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-------------CceEEEEeCCHHHHHHHHHh-----CCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQK-----EPLKE 161 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~g~D~s~~~~~~a~~~-----~~~~~ 161 (340)
+...++..+.. ..+.+|+|..||+|.+...+.++.. ...++|+|+++.+...|+-+ ....+
T Consensus 150 Iv~~mv~ll~~-~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 150 LIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hhHhhheeccC-cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 34444444433 4678999999999999988877531 13599999999999999865 12234
Q ss_pred cEEEEcCCCCCCCCCCCccEEEecCcccccC----------------CH-HHHHHHHHHhcccCcEEEEEccCCCchhHh
Q 019479 162 CTIIEGDAEDLPFPTDYADRYVSAGSIEYWP----------------DP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLS 224 (340)
Q Consensus 162 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~----------------d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 224 (340)
..+...|....+ ...+||+|+++--+.... +. ..++..+.+.|++||++.++.+... +
T Consensus 229 ~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~---L- 303 (425)
T d2okca1 229 SPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV---L- 303 (425)
T ss_dssp CSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH---H-
T ss_pred ceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH---h-
Confidence 567778876533 456799999976553211 11 2589999999999999988854210 0
Q ss_pred hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccc
Q 019479 225 RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 263 (340)
+. --....+++.|-+.+ .+..+..+....+.
T Consensus 304 --~~-----~~~~~~iR~~Ll~~~-~i~aIi~LP~~~F~ 334 (425)
T d2okca1 304 --FE-----AGAGETIRKRLLQDF-NLHTILRLPTGIFY 334 (425)
T ss_dssp --HC-----STHHHHHHHHHHHHE-EEEEEEECCSSSSS
T ss_pred --hh-----hhhHHHHHHHHHHhc-chhHhhcCCccccc
Confidence 00 001345666665543 44566666655443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=8.8e-06 Score=72.62 Aligned_cols=100 Identities=22% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------------------CCcEEEEcCCCCCC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------------------KECTIIEGDAEDLP- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------------------~~i~~~~~d~~~~~- 173 (340)
++.+|||..||+|..++..+...+..+|++.|+|+.+++.++++... .++.+.+.|+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 56899999999999999888876667999999999999999977321 12455566653321
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.....||+|.+.- +-.+..+|..+.+.++.||.|.++..
T Consensus 125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEec
Confidence 2345699998753 34667899999999999999999843
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.85 E-value=4.5e-05 Score=63.05 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH--HHHhCCCCCcEEEEcC-CCCCCCCCCCccEEEecC
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK--AKQKEPLKECTIIEGD-AEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~--a~~~~~~~~i~~~~~d-~~~~~~~~~~fD~v~~~~ 186 (340)
...+..+|+|+|||.|.|+..++.+.+...|.|+|+--..-+. ..+.....-+++...+ +.. .+....|.|+|.-
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 3457779999999999999999988555678888873221000 0000111113343332 222 3567799999875
Q ss_pred cccccCCHH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 187 SIEYWPDPQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+- ...++. +++.-+.+.|+|||.+++-...
T Consensus 141 ~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 141 GE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 43 344442 5677777899999988776443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00012 Score=63.00 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC---CCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP---TDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~---~~~fD~v~~ 184 (340)
.++.+|||+++|.|.-+..++... +...++++|+++.-++..+++ .+..++.+...|...+... .+.||.|++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 478999999999999999888764 357999999999888887765 5567889999988665422 256999997
Q ss_pred c
Q 019479 185 A 185 (340)
Q Consensus 185 ~ 185 (340)
.
T Consensus 173 D 173 (293)
T d2b9ea1 173 D 173 (293)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.62 E-value=0.00017 Score=63.43 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=90.5
Q ss_pred CCCEEEEEcCccchHHHHH-------HH---------hCCCceEEEEeCCHHHHHHHHHhCC-----CCC--cEEEEcCC
Q 019479 113 RNMRVVDVGGGTGFTTLGI-------VK---------HVDAKNVTILDQSPHQLAKAKQKEP-----LKE--CTIIEGDA 169 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l-------~~---------~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~--i~~~~~d~ 169 (340)
..-+|.|+||.+|..+..+ .+ ..|..+|..-|+-..--...=+.+. .++ +..+.+++
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 4468999999999887432 21 1245788888874432222222111 112 33466888
Q ss_pred CCCCCCCCCccEEEecCcccccCC---------------------------------HHHHHHHHHHhcccCcEEEEEcc
Q 019479 170 EDLPFPTDYADRYVSAGSIEYWPD---------------------------------PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 170 ~~~~~~~~~fD~v~~~~~l~~~~d---------------------------------~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-.--+|+++.|++++..++||+.. +..+|+.=.+-|+|||+++++..
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 776688999999999999999742 12577777788999999998743
Q ss_pred CCCc--------hhHhhHhhhHhh--------------------cCCCHHHHHHHHHHCC-CcEEEEEEe
Q 019479 217 VYPT--------FWLSRFFADVWM--------------------LFPKEEEYIEWFQKAG-FKDVKLKRI 257 (340)
Q Consensus 217 ~~~~--------~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~aG-F~~v~~~~~ 257 (340)
..+. ......+...|. .+++.+++++.+++.| |++.+++..
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~ 280 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEee
Confidence 3221 001111111111 1568999999998865 666655544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=4.7e-05 Score=59.97 Aligned_cols=97 Identities=20% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
+++.+||-+|+| .|.++..+++.. +++|+++|.+++.++.+++.-.. .++. .+..+ .....+.+|+|+.....
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~---~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGAD---HYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCS---EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCc---EEeeccchHHHHHhhhcccceEEEEecC
Confidence 588999999998 678888888875 78999999999999999876322 1221 11111 11224569988864332
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+-. .+..+.+.|+|+|++++...
T Consensus 102 ~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 102 LTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp STTC----CTTTGGGGEEEEEEEEECCC
T ss_pred Cccc----hHHHHHHHhhccceEEEecc
Confidence 2211 24567899999999988753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.47 E-value=0.00075 Score=52.67 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=68.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~fD 180 (340)
+++.+||-+||| .|.++..+++.. +.+|+++|.+++-++.+++.... ..+ ..+..... .....+|
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~--~~~-~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGAD--VTL-VVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS--EEE-ECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCc--EEE-eccccccccchhhhhhhcccccCCc
Confidence 578999999998 677888888875 68999999999999999875321 122 22221111 1134589
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|+-.- .....+..+.+.++|+|++++....
T Consensus 101 ~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 101 VTIDCS------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence 888532 2346788899999999999988643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.42 E-value=0.00051 Score=55.21 Aligned_cols=100 Identities=24% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~v 182 (340)
+++.+||.+|||. |..+..+++.....+|+++|.++.-++.|++.-. .... +..+.+ .....+|++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga----~~~~-~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIAD-LSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEE-TTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc----cEEE-eCCCcCHHHHHHHHhCCCCcEEE
Confidence 5899999999997 6678888887766799999999999999987532 2222 211111 123458998
Q ss_pred EecCccc---------ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIE---------YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~---------~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-.-... ........++.+.+.++|||++.+...
T Consensus 99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 8543211 111234789999999999999998863
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00012 Score=68.36 Aligned_cols=150 Identities=14% Similarity=0.019 Sum_probs=89.9
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC------------------CceEEEEeCCHHHHHHHHHh--CCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD------------------AKNVTILDQSPHQLAKAKQK--EPL 159 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~g~D~s~~~~~~a~~~--~~~ 159 (340)
+...+...+.. ..+.+|+|..||+|.+...+.+... ...++|+|+++.+...|+-+ ...
T Consensus 152 Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 33444444433 4678999999999999887765421 12589999999999998854 111
Q ss_pred --C----CcEEEEcCCCCCC-CCCCCccEEEecCccccc-------------CCH-HHHHHHHHHhcccCcEEEEEccCC
Q 019479 160 --K----ECTIIEGDAEDLP-FPTDYADRYVSAGSIEYW-------------PDP-QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 160 --~----~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~-------------~d~-~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
. +-.+...+....+ ....+||+|+++--+..- .+. -.++..+.+.|||||++.++.+..
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 1 1223444443211 234679999997554311 111 258999999999999998886421
Q ss_pred CchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccc
Q 019479 219 PTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262 (340)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 262 (340)
.+ +. -.....+++.|-+.+ .+..+..+....+
T Consensus 311 ---~L---f~-----~~~~~~iR~~Ll~~~-~i~aII~LP~~~F 342 (524)
T d2ar0a1 311 ---VL---FE-----GGKGTDIRRDLMDKC-HLHTILRLPTGIF 342 (524)
T ss_dssp ---HH---HC-----CTHHHHHHHHHHHHE-EEEEEEECCSSCS
T ss_pred ---Hh---hh-----hhhhHHHHHHHHHcC-CceEEEECCCCcC
Confidence 10 00 001234555555433 4556666655444
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=0.00013 Score=57.98 Aligned_cols=96 Identities=24% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC--------C-CCCCCccE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL--------P-FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~--------~-~~~~~fD~ 181 (340)
+++.+||-+|+| .|..+..+++..+..+|+++|.+++.++.+++.... .++...-.+. . .....+|+
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~---~vi~~~~~~~~~~~~~i~~~~~~~g~Dv 103 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD---LTLNRRETSVEERRKAIMDITHGRGADF 103 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce---EEEeccccchHHHHHHHHHhhCCCCceE
Confidence 578999999998 488888999886434899999999999999875321 1221111110 0 12345999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+-.-.- ...++.+.+.|++||++++...
T Consensus 104 vid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 104 ILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 8854221 2467888999999999988753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.31 E-value=6.4e-05 Score=59.57 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~ 184 (340)
+++.+||-+|||. |..+..+++.....+|+++|.++.-++.+++.-.. .++...-+++ . .....+|+|+-
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~---~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT---DILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS---EEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc---ccccccchhHHHHHHHHhhccCcceEEE
Confidence 5788999999986 88899999986446899999999999999875321 1221111110 0 12345999886
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.-.. ...++.+.+.++|+|++++...
T Consensus 103 ~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 103 AGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred ccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 4332 2467888999999999998754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.28 E-value=0.00021 Score=56.49 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--C--CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--L--PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~--~~~~~~fD~v~~~~ 186 (340)
+++.+||-+|||. |..+..+++......|+++|.+++-.+.+++.-...-+.....|-.. . ......+|+|+-..
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~ 106 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA 106 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence 5889999999997 88999999987556899999999999999975332111111111100 0 01235689998532
Q ss_pred cccccCCHHHHHHHHHHhcccC-cEEEEEccC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG-GKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~~ 217 (340)
.....+.+..+.+++| |++++....
T Consensus 107 ------G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 107 ------GTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp ------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred ------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence 2345789999999997 999887643
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.00041 Score=60.36 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~ 171 (340)
.+.+|||||.|.|.++..+.+.....+|+++|.++...+..++.....+++++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 57789999999999999999874346899999999999999988777889999999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.00025 Score=55.33 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~ 185 (340)
+++.+||-+|+| .|..+..+++.. +.+|+++|.++..++.+++.-.. .++..+-++.. ...+.+|.|++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGAS---LTVNARQEDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS---EEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCcc---ccccccchhHHHHHHHhhcCCccccccc
Confidence 578899999998 477788888876 68999999999999999875321 22222211110 112223344332
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. . ...++.+.+.|+|||++++...
T Consensus 102 ~------~-~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 102 V------S-NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp S------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred c------c-chHHHHHHHHhcCCcEEEEEEe
Confidence 1 1 3467889999999999988754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.14 E-value=0.00017 Score=57.02 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~~~~~~fD~v~~~ 185 (340)
+++.+||-+|||. |..+..+++..+...++++|.++.-++.+++.-.. .++..+-++. .+.++.+|+|+-.
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT---HVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe---EEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 5899999999984 55677778777667888999999999999876321 2332222221 1234579998853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
- .....++.+.+.++|+|++++..
T Consensus 104 ~------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 104 T------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp S------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred C------CcHHHHHHHHhcccCceEEEEEe
Confidence 2 23357789999999999998875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.10 E-value=0.00025 Score=55.80 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----C-CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL----P-FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~----~-~~~~~fD~v~~~ 185 (340)
+++.+||-+|+|. |..+..+++......|+++|.+++-++.+++.... .++..+-+.. . .....+|+|+-.
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~---~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD---HVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS---EEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc---eeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 5789999999985 56667778776667899999999999999875332 2332221110 0 123458988854
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ....++...+.|++||++++...
T Consensus 108 ~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 108 VG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp SC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred cC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 32 23468889999999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00043 Score=54.25 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~v 182 (340)
+++.+||-+|||. |..+..+++..+..+|+++|.++.-++.|++.-.. .++..+-++.. .....+|+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~---~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD---LVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS---EEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc---ccccccccccccccccccccCCCCceEE
Confidence 4788999999985 56677777776445899999999999999875321 12222211110 012458998
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+-... ....++.+.+.+++||++++....
T Consensus 102 id~~G------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 102 IECTG------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred EeccC------CchhHHHHHHHhcCCCEEEEEecC
Confidence 86432 245788999999999999988643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.04 E-value=0.00034 Score=54.78 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=67.1
Q ss_pred CCCCEEEEEcC-c-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-+|| | .|..+..+++..+..+|+++|.++.-.+.+++.-.. .++..+-++.. ...+.||+|+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD---YVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc---eeeccCCcCHHHHHHHHhhcccchhhh
Confidence 57899999997 3 667777777776567999999999999999875321 22222222210 1235699888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-.. .....++.+.+.++|||++++...
T Consensus 103 d~~------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 103 DLN------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp ESC------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred ccc------ccchHHHhhhhhcccCCEEEEecc
Confidence 643 234567788999999999988754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00098 Score=51.97 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~ 189 (340)
+++.+||-+||| .|.++..+++.. +.+++++|.+++-.+.+++.-.. .++...-.. .....+.+|+++-.....
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad---~~i~~~~~~~~~~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGAD---EVVNSRNADEMAAHLKSFDFILNTVAAP 104 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCS---EEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCc---EEEECchhhHHHHhcCCCceeeeeeecc
Confidence 588999999997 478888888886 77888999999988988875332 222211111 112235699988653322
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..++...+.++++|++++...
T Consensus 105 ------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 105 ------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------CCHHHHHTTEEEEEEEEECCC
T ss_pred ------hhHHHHHHHHhcCCEEEEecc
Confidence 246778899999999998753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.00056 Score=53.76 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~ 181 (340)
+++.+||-.|+ |.|..+..+++.. +++|++++.+++..+.+++.-. . .++ |..+.. .....+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga-~--~vi--~~~~~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA-H--EVF--NHREVNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-S--EEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCc-c--ccc--ccccccHHHHhhhhhccCCceE
Confidence 58899999996 5788888888886 7899999999988888886532 1 122 221111 23456999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+.... ...++...++|+|+|+++....
T Consensus 101 v~d~~g-------~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 101 IIEMLA-------NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp EEESCH-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred Eeeccc-------HHHHHHHHhccCCCCEEEEEec
Confidence 986432 2468889999999999988753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.69 E-value=0.00038 Score=53.99 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=70.7
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|+-||+|. |..+...+... +..|+++|.+++.++..+.... .+++....+-+.+...-...|+||..-.+---
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 578999999994 77788888886 7999999999999988876543 34555444433222122357999986555444
Q ss_pred CCHHHHHHHHHHhcccCcEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i 213 (340)
+-|.-+=+++.+.+|||..++=
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEE
T ss_pred ccCeeecHHHHhhcCCCcEEEE
Confidence 4445556889999999998753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.57 E-value=0.0013 Score=54.63 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=58.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---C---C------CCCcEEEEcCCCC-CCCCCCCcc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---E---P------LKECTIIEGDAED-LPFPTDYAD 180 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~---~------~~~i~~~~~d~~~-~~~~~~~fD 180 (340)
..+|||.-||.|..+..++.. +++|+++|-++.+....+.. . . ..|++++++|..+ +....++||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 458999999999999999998 78999999999765554432 1 1 1368999999754 333356799
Q ss_pred EEEecCccccc
Q 019479 181 RYVSAGSIEYW 191 (340)
Q Consensus 181 ~v~~~~~l~~~ 191 (340)
+|++--++.+-
T Consensus 167 vIYlDPMFp~~ 177 (250)
T d2oyra1 167 VVYLDPMFPHK 177 (250)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99998777554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.52 E-value=0.0023 Score=50.24 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--C--CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--L--PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~--~~~~~~fD~v~~~~ 186 (340)
+++.+||-+|||. |..+..+++.....+|+++|.+++-++.|++.-...-+.....|... . ......+|+|+-..
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~ 107 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI 107 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence 5899999999984 66778888887668999999999999999987442211111111100 0 01234689888532
Q ss_pred cccccCCHHHHHHHHHHhc-ccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVL-KIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~L-kpgG~l~i~~~ 216 (340)
. . ...+......+ +.+|++++...
T Consensus 108 g-----~-~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 108 G-----H-LETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp C-----C-HHHHHHHHTTSCTTTCEEEECSC
T ss_pred C-----c-hHHHHHHHHHhhcCCeEEEEEEc
Confidence 2 2 23444444444 55699988754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.45 E-value=0.0033 Score=49.22 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC--C--CCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAE--D--LPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~--~--~~~~~~~fD~v~~~~ 186 (340)
+++.+||-+|||. |..+..+++.....+|+++|.+++-++.+++.-...-+.+...|.. + .....+.+|+|+-.-
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA 105 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence 5899999999985 5667777887666799999999999999997633211111112210 0 002234689888532
Q ss_pred cccccCCHHHHHHHHHHhccc-CcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKI-GGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkp-gG~l~i~~~ 216 (340)
. ....+......+++ +|++++...
T Consensus 106 g------~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 106 G------RIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp C------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred C------CchHHHHHHHHHHHhcCceEEEEE
Confidence 2 23456666666655 599888764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.45 E-value=0.0018 Score=50.16 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~~ 184 (340)
+++.+||-.|+|. |..+..+++. .+.+|+++|.+++-++.+++... ........+.. ...+ +|.++.
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga----~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGA----DLVVNPLKEDAAKFMKEKVGG-VHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTC----SEEECTTTSCHHHHHHHHHSS-EEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCc----ceecccccchhhhhcccccCC-CceEEe
Confidence 4789999999985 5566677776 46799999999999999987422 12222111110 1223 444443
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..+ -...+....+.|+|||++++....
T Consensus 100 ~~~------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 100 TAV------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp SSC------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred ecC------CHHHHHHHHHHhccCCceEecccc
Confidence 221 135789999999999999987543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.0059 Score=47.80 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--CCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--LPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~~~~~~~fD~v~~~~~ 187 (340)
+++.+||-.|+ |.|.++..+++.. +++|+++.-+++-.+.+++.....-+.. ..+..+ .....+.+|+|+-.-.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~-~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAR-EDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEEC-C---------CCSCCEEEEEECST
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeec-chhHHHHHHHhhccCcCEEEEcCC
Confidence 46888999985 5678899999885 8999999999999999987633221221 111111 1234567998885432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
- ..+.+..++|+|||+++.....
T Consensus 108 g-------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 108 G-------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp T-------TTHHHHHHTEEEEEEEEECSCC
T ss_pred c-------hhHHHHHHHhCCCceEEEeecc
Confidence 1 2478899999999999988654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.84 E-value=0.077 Score=44.78 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----C--CCCcEEEEcCCCCCC--------CCCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----P--LKECTIIEGDAEDLP--------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~--~~~i~~~~~d~~~~~--------~~~~~ 178 (340)
....|+.+|||--.-...+ ...++.+++=+|. |++++.-++.+ . ..+..++..|+.+.+ +....
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 3457778999976655444 2235678999998 88887665542 1 234667888886521 11222
Q ss_pred ccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchh-HhhH---hh---------------hHhhcCCCH
Q 019479 179 ADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRF---FA---------------DVWMLFPKE 237 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~---~~---------------~~~~~~~~~ 237 (340)
-=++++-.++.+++.. ..+++.+.+...||+.|++......... .... .. ..+....+.
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENR 246 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCch
Confidence 3467777788888655 4889999999999999987643322111 0000 00 001112234
Q ss_pred HHHHHHHHHCCCcEEEE
Q 019479 238 EEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 238 ~~~~~~l~~aGF~~v~~ 254 (340)
.+..++|+..||++...
T Consensus 247 ~~~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 247 AVVADWLNRHGWRATAQ 263 (297)
T ss_dssp CCHHHHHTTTTEEEEEE
T ss_pred hhHHHHHHhCCCEEEEe
Confidence 56789999999986644
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.80 E-value=0.0052 Score=48.08 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=65.4
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEE----------EcCCCCCC--C-----
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTII----------EGDAEDLP--F----- 174 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~----------~~d~~~~~--~----- 174 (340)
++.+||-||+|. |..+...+..+ ++.|+++|.++..++..++... ..+++. .+...++. +
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~-~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGG-KFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTC-EECCC-----------------------CCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhc-ceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 578999999995 67788888876 8899999999999999987532 111110 00111100 0
Q ss_pred -----CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEE
Q 019479 175 -----PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 175 -----~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i 213 (340)
.-...|+||..-.+.--..|.-+=+++.+.+|||..++=
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 013579999866555444444556789999999998753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.76 E-value=0.0037 Score=49.07 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-.|+ |.|..+..+++.. +.++++++-+++..+.+++... . .++...-.++. .....+|+|+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga-~--~vi~~~~~~~~~~v~~~t~~~g~d~v~ 99 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGV-E--YVGDSRSVDFADEILELTDGYGVDVVL 99 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCC-S--EEEETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccc-c--ccccCCccCHHHHHHHHhCCCCEEEEE
Confidence 57899998773 5678889999886 7899999888988888886422 1 12211111110 1345699999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.... ...++.+.++|+++|+++...
T Consensus 100 d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 100 NSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp ECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred eccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 7433 246788899999999998864
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.70 E-value=0.0078 Score=46.75 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCCC------CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AEDL------PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~~------~~~~~~fD~v~ 183 (340)
+++.+||-+||| .|..+..+++......|+++|.+++-.+.+++.-... ++..+ -.+. ....+.+|+|+
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE---CINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 589999999986 4567788888876679999999999999998764321 22111 1110 01235699998
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
-.-. ....++.+...+++||.+++.
T Consensus 104 d~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 104 ECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred ecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 6432 235778899999999877665
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0066 Score=47.35 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 112 DRNMRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
+++.+||-.|+| .|..+..+++.. +++|+++|.|++-.+.+++.-.. .++..+-+++. .....+|+|+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~---~vi~~~~~d~~~~v~~~t~g~g~d~v~ 102 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAW---QVINYREEDLVERLKEITGGKKVRVVY 102 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCS---EEEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCe---EEEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 578999998665 577888888885 78999999999999999876432 22221111110 1245689888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-.-.- ..+....+.++++|++++..
T Consensus 103 d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 103 DSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp ECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred eCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 64332 24678899999999987764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.24 E-value=0.017 Score=44.75 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCC------CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDL------PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~------~~~~~~fD~v~ 183 (340)
+++.+||-+|+|. |..+..+++.....+|+++|.+++-.+.+++.... ..+. .+.++. ....+.+|+|+
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT---ECVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS---EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe---eEEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 5899999999964 45667777777668999999999999999876432 1111 111111 02335699988
Q ss_pred ecCcccccCCHHHHHHHHHHhcccC-cEEEEE
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACVI 214 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~ 214 (340)
-.... ...++.+...+++| |.+++.
T Consensus 104 d~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 104 EVIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp ECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred ecCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 64433 34567778888887 455544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.19 E-value=0.017 Score=49.03 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
...+.+.++.... +++..|||.=||+|..+...... +.+.+|+|++++.++.|++|+.
T Consensus 236 P~~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 236 PAKLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp CTHHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGS
T ss_pred chHHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHH
Confidence 3455666665553 48899999999999999988777 8999999999999999998854
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.10 E-value=0.071 Score=40.75 Aligned_cols=92 Identities=14% Similarity=0.039 Sum_probs=60.0
Q ss_pred EEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|+=||||. |.++..+.+.....+|+|+|.+++.++.+++... +.....+.... .+...|+|++..-.. .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---~~~~~~~~~~~--~~~~~dlIila~p~~---~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---IDEGTTSIAKV--EDFSPDFVMLSSPVR---T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---CSEEESCGGGG--GGTCCSEEEECSCHH---H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---chhhhhhhhhh--hccccccccccCCch---h
Confidence 588899985 3456666665445789999999999999987522 22222232221 233579999754322 3
Q ss_pred HHHHHHHHHHhcccCcEEEEEc
Q 019479 194 PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...++.++.+.++++..+.-+.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEECC
T ss_pred hhhhhhhhhccccccccccccc
Confidence 3478889999999876665443
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.24 Score=41.91 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=79.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCc--e-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAK--N-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~--~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~ 187 (340)
+.+|+|+-||.|.+...+.+. |. + +.++|+++.+++..+.+. ++..++.+|+.++. ++...+|+++...-
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a--G~~~~~~~a~E~~~~a~~~~~~n~--~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES--CIPAQVVAAIDVNTVANEVYKYNF--PHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH--TCSEEEEEEECCCHHHHHHHHHHC--TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCEEEEcCcCccHHHHHHHHc--CCCCeEEEEEECCHHHHHHHHHHC--CCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 468999999999998887665 43 3 678999999999888765 34567778887654 22235899997655
Q ss_pred cccc---------CCHH-HHHHHHHHhc-----ccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 188 IEYW---------PDPQ-RGIKEAYRVL-----KIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 188 l~~~---------~d~~-~~l~~~~~~L-----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
...+ .|.. .++-++.+++ || ++++.+.+..-.. ....+.+.+.|++.||.+
T Consensus 78 Cq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~~-----------~~~~~~i~~~l~~~GY~v- 143 (343)
T d1g55a_ 78 CQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFEV-----------SSTRDLLIQTIENCGFQY- 143 (343)
T ss_dssp ------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGGG-----------SHHHHHHHHHHHHTTEEE-
T ss_pred cccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCccc-----------chhhHHHHhhhhcccccc-
Confidence 4433 2222 2444444444 35 3455554432110 012356788899999986
Q ss_pred EEEEeCCccc
Q 019479 253 KLKRIGPKWY 262 (340)
Q Consensus 253 ~~~~~~~~~~ 262 (340)
....+....|
T Consensus 144 ~~~vlna~dy 153 (343)
T d1g55a_ 144 QEFLLSPTSL 153 (343)
T ss_dssp EEEEECGGGG
T ss_pred ceeeeecccc
Confidence 4445544444
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.81 E-value=0.021 Score=44.12 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~v~ 183 (340)
+++.+||-+|+|. |..+..+++......|+++|.+++-++.+++.-.. .++..+-++.. .....+|+|+
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd---~~in~~~~~~~~~~~~~~~~~~G~d~vi 103 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT---DFVNPNDHSEPISQVLSKMTNGGVDFSL 103 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC---EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc---EEEcCCCcchhHHHHHHhhccCCcceee
Confidence 5899999999987 45566666766677999999999999999976332 12211111111 1234689988
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCc-EEEEE
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGG-KACVI 214 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG-~l~i~ 214 (340)
-.-. ....+..+...+++|| .+++.
T Consensus 104 d~~G------~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 104 ECVG------NVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp ECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred eecC------CHHHHHHHHHHhhCCCcceeEE
Confidence 5432 2345677777777664 44444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.71 E-value=0.005 Score=47.92 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCCCEEEEEcC-c-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGG-G-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+++++||-.|+ | .|..+..+++.. +++|++++.+++..+.+++.-...-+. ..+..........+|+|+-.. .
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i~--~~~~~~~~~~~~g~D~v~d~~--G 100 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAAT--YAEVPERAKAWGGLDLVLEVR--G 100 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEE--GGGHHHHHHHTTSEEEEEECS--C
T ss_pred CCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceeee--hhhhhhhhhcccccccccccc--c
Confidence 58899999884 3 478888888885 789999999999888888753211111 111100001234599988532 1
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+ .+....+.|+|+|+++...
T Consensus 101 --~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 101 --K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --T----THHHHHTTEEEEEEEEEC-
T ss_pred --h----hHHHHHHHHhcCCcEEEEe
Confidence 1 3577889999999998764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.51 E-value=0.019 Score=44.86 Aligned_cols=93 Identities=17% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~~~~~~fD~v~ 183 (340)
+++++||-.|++ .|..+..+++.. +++|++++-+++..+.+++.... .++..+-++. ......+|+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~---~vi~~~~~~~~~~~~~~~~~~Gvd~v~ 103 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFD---AAFNYKTVNSLEEALKKASPDGYDCYF 103 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS---EEEETTSCSCHHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhh---hhcccccccHHHHHHHHhhcCCCceeE
Confidence 589999988885 467888888885 78999999999999888875321 1222121111 01335699988
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-.-. ...++++.+.|+|||++++..
T Consensus 104 D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 104 DNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp ESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred EecC-------chhhhhhhhhccCCCeEEeec
Confidence 5321 247889999999999998874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.50 E-value=0.037 Score=45.24 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
..+...++.... .++..|||.=||+|..+....+. +.+.+|+|++++.++.|++|+
T Consensus 199 ~~L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 199 RDLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH
Confidence 455566665553 47899999999999999987777 889999999999999999874
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.48 E-value=1.1 Score=37.22 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=77.7
Q ss_pred CEEEEEcCccchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC-CCCCccEEEecCccccc-
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW- 191 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~- 191 (340)
.+|||+=||.|.+..-+.+. |.+ +.++|+++.+++..+.+.. -.++.+|+.++.. .-...|+++...-...+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~---~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS 75 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS---AKLIKGDISKISSDEFPKCDGIIGGPPCQSWS 75 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCC---SEEEESCTTTSCGGGSCCCSEEEECCCCTTTS
T ss_pred CeEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC---CCCccCChhhCCHhHcccccEEeecccccccc
Confidence 37999999999999888776 555 5599999999998887754 3567899987642 22458999976444433
Q ss_pred --------CCHH-HH---HHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 192 --------PDPQ-RG---IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 192 --------~d~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.|.. .. +-++.+.++|. +++.+.+..-.... .....+.+.+.+.+.||.+....
T Consensus 76 ~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~~~~--------~~~~~~~~l~~l~~lGY~v~~~v 141 (324)
T d1dcta_ 76 EGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQR--------HNKAVQEFIQEFDNAGYDVHIIL 141 (324)
T ss_dssp SSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGGSGG--------GHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccccccccccccchHHHHHHHHHhhCCc--eeeccccccccccc--------cchhhHHHHhHHhhCCCccceee
Confidence 3443 22 23355566774 33343332110000 00123556667788898754433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.43 E-value=0.31 Score=35.29 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=56.0
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
++|+=+|+ |.++..+++.+ .+.+|+.+|.+++.++.+.+.. ++.++.+|..+.. ..-..+|.+++.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~--- 72 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DALVINGDCTKIKTLEDAGIEDADMYIAV--- 72 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SSEEEESCTTSHHHHHHTTTTTCSEEEEC---
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---hhhhccCcccchhhhhhcChhhhhhhccc---
Confidence 36777777 45555555432 3689999999999998887653 4678999997632 223558888873
Q ss_pred cccCCHH--HHHHHHHHhcccCcEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKA 211 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l 211 (340)
.++.+ .......+.+.+.-.+
T Consensus 73 --t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 --TGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp --CSCHHHHHHHHHHHHHTTCCCEE
T ss_pred --CCcHHHHHHHHHHHHHcCCceEE
Confidence 22332 3344555667776443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.39 E-value=0.13 Score=38.92 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=57.0
Q ss_pred CEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 115 MRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 115 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
++|.=||+|. +.++..+.+. +.+|++.|.+++.++.+++... +.....+.+. -...|+|+..--. .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~---~~~~~~~~~~----~~~~DiIilavp~---~ 68 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL---VDEAGQDLSL----LQTAKIIFLCTPI---Q 68 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS---CSEEESCGGG----GTTCSEEEECSCH---H
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc---cceeeeeccc----ccccccccccCcH---h
Confidence 3677788873 3455666555 7899999999999998886522 1122223222 2347999874321 2
Q ss_pred CHHHHHHHHHHhcccCcEEEEE
Q 019479 193 DPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+++++...++++-.++-.
T Consensus 69 ~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 69 LILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhhhhhcccccceeec
Confidence 3357889998888887766443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.18 E-value=0.02 Score=44.13 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=65.7
Q ss_pred CCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-CCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-PFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 189 (340)
++.+||--|+ |-|.++..+++.. +++|+++.-+++-.+.+++.....-+.....+.+.. ....+.+|+|+-.-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-- 99 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-- 99 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc--
Confidence 5667887774 5788999999986 789999999999888888764322111111111111 233456998874321
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+.+..+.|+|+|++++....
T Consensus 100 -----g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 100 -----GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp -----THHHHHHHTTEEEEEEEEECCCS
T ss_pred -----HHHHHHHHHHhccCceEEEeecc
Confidence 24678999999999999887644
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.72 E-value=1.3 Score=36.85 Aligned_cols=126 Identities=13% Similarity=-0.021 Sum_probs=77.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 190 (340)
.+.+|||+=||.|.+...+.+. |.+ +.++|+++.+++..+.+.... .++|+.++... -..+|+++...-...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~~----~~~Di~~~~~~~~~~~Dll~ggpPCq~ 83 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK----PEGDITQVNEKTIPDHDILCAGFPCQA 83 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC----CBSCGGGSCGGGSCCCSEEEEECCCTT
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCCC----CcCchhcCchhhcceeeeeecccccch
Confidence 5789999999999999988766 554 566999999999988775321 25777665322 245899997544332
Q ss_pred c---------CCHH----HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 191 W---------PDPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 191 ~---------~d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+ .|.. ..+-++.+.++|. +++.+.+..-... . .....+.+.+.|++.||.+...
T Consensus 84 fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~-~-------~~~~~~~i~~~l~~lGY~~~~~ 150 (327)
T d2c7pa1 84 FSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASH-D-------NGNTLEVVKNTMNELDYSFHAK 150 (327)
T ss_dssp TCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTG-G-------GGHHHHHHHHHHHHTTBCCEEE
T ss_pred hhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhh-c-------cchhhHHhhhHHHhcCCcceee
Confidence 2 2222 2233444556774 3344333221100 0 0112467778999999986543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.67 E-value=0.058 Score=44.65 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=47.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
-..+...++.... .++..|||.=||+|..+...... +.+.+|+|+++...+.|++|+
T Consensus 193 P~~L~~~~I~~~s--~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 193 PAAVIERLVRALS--HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp CHHHHHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHH
T ss_pred chhHHHHHHHhhc--CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHH
Confidence 3456666666553 48999999999999999988887 889999999999999999874
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.22 E-value=0.18 Score=43.72 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=52.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+..+|+|+|+|+|.++..+++.+ ...+++.+|.|+...+.-+++... .++.. ..++++++ +. .-+|++
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w-~~~~~~~~--~~-~g~iia 154 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHW-HDSFEDVP--EG-PAVILA 154 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEE-ESSGGGSC--CS-SEEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccccccee-ccChhhcc--cC-CeEEEe
Confidence 45689999999999998887653 235799999999988777776543 33432 34555443 11 257777
Q ss_pred cCcccccC
Q 019479 185 AGSIEYWP 192 (340)
Q Consensus 185 ~~~l~~~~ 192 (340)
+..+..++
T Consensus 155 NE~fDAlP 162 (365)
T d1zkda1 155 NEYFDVLP 162 (365)
T ss_dssp ESSGGGSC
T ss_pred cccCcccc
Confidence 77776665
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.24 Score=38.15 Aligned_cols=93 Identities=13% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CC-CCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DA-EDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~-~~~~~~~~~fD~v~~~~~l 188 (340)
++.+||-.|+ |.|..+..+++.. +.+|+++.-+++..+.+++...+ .++.- +. ..-.+....+|.|+- .+.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lGad---~vi~~~~~~~~~~l~~~~~~~vvD-~Vg 105 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLGAS---RVLPRDEFAESRPLEKQVWAGAID-TVG 105 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTEE---EEEEGGGSSSCCSSCCCCEEEEEE-SSC
T ss_pred CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhccc---cccccccHHHHHHHHhhcCCeeEE-Ecc
Confidence 4557877664 4678899999986 88999999999999988865321 11211 11 111234556788752 222
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+.+..+.|+++|+++....
T Consensus 106 ------g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 106 ------DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ------HHHHHHHHHTEEEEEEEEECCC
T ss_pred ------hHHHHHHHHHhccccceEeecc
Confidence 2468899999999999998753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.54 Score=36.20 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=60.4
Q ss_pred CCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CCCCCccEEEecC
Q 019479 114 NMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FPTDYADRYVSAG 186 (340)
Q Consensus 114 ~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~ 186 (340)
+.+||-.| .|.|..+..+++..+...|++++.+++......+..... .++...-+++. ..++.+|+|+-.-
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad--~vi~~~~~~~~~~~~~~~~~GvDvv~D~v 108 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD--AAVNYKTGNVAEQLREACPGGVDVYFDNV 108 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS--EEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce--EEeeccchhHHHHHHHHhccCceEEEecC
Confidence 37899877 468999999999875567888887777666555443322 11111111110 1235699998432
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...+....++|+++|+++...
T Consensus 109 G-------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 109 G-------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp C-------HHHHHHHHTTEEEEEEEEEC-
T ss_pred C-------chhHHHHhhhccccccEEEec
Confidence 2 246889999999999998764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.98 Score=38.19 Aligned_cols=145 Identities=13% Similarity=0.180 Sum_probs=90.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC------------------------CCCCcEEEEcC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE------------------------PLKECTIIEGD 168 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~------------------------~~~~i~~~~~d 168 (340)
+...|+-+|||.-.....+...+++.+++=+|. |++++.-++.+ ..++...+..|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 456899999999888888877777888889999 66655433221 12356678888
Q ss_pred CCCCC---------CCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCC---CchhHhhH-hhhH---
Q 019479 169 AEDLP---------FPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVY---PTFWLSRF-FADV--- 230 (340)
Q Consensus 169 ~~~~~---------~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~~~-~~~~--- 230 (340)
+.+.. +....-=++++-.++.+++.. .++++.+.+... +|.+++-++.. ++....+. ...+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~D~FG~~M~~nl~~~ 253 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPNDRFGAIMQSNLKES 253 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTTCCHHHHHHHHHHHH
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCCChHHHHHHHHHHHh
Confidence 86632 112223478888999999654 367888877765 56666666652 22222211 1111
Q ss_pred -------hhcCCCHHHHHHHHHHCCCcEEEEEEeCCcc
Q 019479 231 -------WMLFPKEEEYIEWFQKAGFKDVKLKRIGPKW 261 (340)
Q Consensus 231 -------~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~ 261 (340)
...+.+.+...+.+ .|+..+...++...|
T Consensus 254 r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm~~~~ 289 (328)
T d1rjda_ 254 RNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMWEIF 289 (328)
T ss_dssp HCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHH--hcCCccchhhHHHHH
Confidence 12256777766655 488888887775443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.27 E-value=0.38 Score=34.68 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=52.4
Q ss_pred EEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCccc
Q 019479 116 RVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSIE 189 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 189 (340)
+++-+|+| .++..+++.+ .+.+|+++|.+++.++.++. .....+.+|..+.. ..-...|.|++...
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~-- 73 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YATHAVIANATEENELLSLGIRNFEYVIVAIG-- 73 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TCSEEEECCTTCTTHHHHHTGGGCSEEEECCC--
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hCCcceeeecccchhhhccCCccccEEEEEcC--
Confidence 45556665 4444444432 37899999999999888763 33467788886643 11235787776321
Q ss_pred ccCCH-HHHHHHHHHhcccCcEEEEE
Q 019479 190 YWPDP-QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 190 ~~~d~-~~~l~~~~~~LkpgG~l~i~ 214 (340)
++. ...+-...+.+.+...++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 74 --ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp --SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred --chHHhHHHHHHHHHHcCCCcEEee
Confidence 122 23344444445566676655
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.97 Score=36.35 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=54.7
Q ss_pred CCCEEEEEcCccc---hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 113 RNMRVVDVGGGTG---FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
.|+++|-.|++.| ..+..+++. +.+|+.+|.+++.++...+.. .++..++.|+.+.. -.-++.|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVREC--PGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 6899999998877 345666665 889999999998888777654 35778888986521 1235799999
Q ss_pred ecCccccc
Q 019479 184 SAGSIEYW 191 (340)
Q Consensus 184 ~~~~l~~~ 191 (340)
.+......
T Consensus 82 nnAg~~~~ 89 (244)
T d1pr9a_ 82 NNAAVALL 89 (244)
T ss_dssp ECCCCCCC
T ss_pred eccccccc
Confidence 77655443
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.62 Score=37.90 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCC----------CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLP----------FP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~----------~~ 175 (340)
+++.+|-.|++.|. .+..+++. |.+|+++|.+++.++.+.+.. ...++.++.+|+.+.. -.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57899999998774 45555555 889999999998887765542 1235778899996522 11
Q ss_pred CCCccEEEecCcccc
Q 019479 176 TDYADRYVSAGSIEY 190 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~ 190 (340)
-+..|+++.+....+
T Consensus 87 ~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 87 HSGVDICINNAGLAR 101 (257)
T ss_dssp HCCCSEEEECCCCCC
T ss_pred cCCCCEEEecccccC
Confidence 256899887655543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.51 E-value=0.48 Score=34.02 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=60.3
Q ss_pred CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcccccCCHH--
Q 019479 122 GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ-- 195 (340)
Q Consensus 122 cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~d~~-- 195 (340)
||.|..+..+++.+.+..++.+|.++...+..+. .++.++.+|..+.. ..-...+.+++.. ++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~n 76 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSET 76 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhhh
Confidence 4567788899998877889999999998887764 46789999986522 2335578888632 2332
Q ss_pred HHHHHHHHhcccCcEEEEEcc
Q 019479 196 RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 196 ~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..+....+.+.|...++....
T Consensus 77 ~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEECS
T ss_pred HHHHHHHHHHCCCceEEEEEc
Confidence 334556677888887766643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.65 Score=37.65 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCC----------CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLP----------FP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~----------~~ 175 (340)
.|+++|--|++.|. .+..++++ |.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. ..
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 47888888887663 34455555 899999999998877766542 2245788899996632 01
Q ss_pred CCCccEEEecCcccccCCHH
Q 019479 176 TDYADRYVSAGSIEYWPDPQ 195 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~ 195 (340)
-+..|+++.+.......+++
T Consensus 80 ~G~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHH
T ss_pred cCCcCeecccccccccccch
Confidence 25799999988887777765
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.74 E-value=1.1 Score=36.03 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+.++.+.+.++...+... .++.++++|+.+.. ..-++.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHcC-CceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57889988988763 44555555 8999999999988877766654 56778889996522 011568
Q ss_pred cEEEecCcccccCCHH-------------------HHHHHHHHhcccCcEEEEEccC
Q 019479 180 DRYVSAGSIEYWPDPQ-------------------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~-------------------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|+++.+....+..+.. .+.+.+...++.++.+++....
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~ 137 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV 137 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence 9988876555432211 3455666778888877766543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.68 E-value=0.4 Score=39.06 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+... .+..++.+|+.+.. -.-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELG-ERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHC-TTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC-CCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 57888888877662 45555555 8899999999988887766544 45677888886521 112568
Q ss_pred cEEEecCcccccCC--------HH-----------HHHHHHHHhcc-cCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPD--------PQ-----------RGIKEAYRVLK-IGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d--------~~-----------~~l~~~~~~Lk-pgG~l~i~~~ 216 (340)
|+++.+.......+ ++ ...+.+.+.|+ .+|.++.+..
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS 138 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS 138 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence 99988765543211 11 33556666665 4788877643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.58 Score=37.75 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=64.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++...+... .+..++..|+.+.. ..-+..
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISDYLG-ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHG-GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhC-CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 57788888877663 44555555 8899999999988887765543 45677888986521 112578
Q ss_pred cEEEecCcccccCCH--------H-----------HHHHHHHHhcc--cCcEEEEEc
Q 019479 180 DRYVSAGSIEYWPDP--------Q-----------RGIKEAYRVLK--IGGKACVIG 215 (340)
Q Consensus 180 D~v~~~~~l~~~~d~--------~-----------~~l~~~~~~Lk--pgG~l~i~~ 215 (340)
|+++.+....+.... + ...+.+.+.|+ .+|.++.+.
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is 136 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG 136 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence 999876554433211 1 34455666663 468887764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.20 E-value=0.61 Score=37.91 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=53.8
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++...+... .++.++.+|+.+.. ..-++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELG-DAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhC-CceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 57899999988773 45666665 8899999999988877766543 46788999996522 012568
Q ss_pred cEEEecCcccc
Q 019479 180 DRYVSAGSIEY 190 (340)
Q Consensus 180 D~v~~~~~l~~ 190 (340)
|+++.+-....
T Consensus 81 DilVnnAg~~~ 91 (254)
T d1hdca_ 81 DGLVNNAGIST 91 (254)
T ss_dssp CEEEECCCCCC
T ss_pred cEEEecCcccc
Confidence 98887655443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.4 Score=39.45 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=66.9
Q ss_pred CCEEEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCCCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
|++|.=|-.|++..+..+++.+ .+.+|+..+.+++..+.+.+.+ ...++.++..|+.+.. -..+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 6777555555555544444432 3689999999998887776542 2356889999997632 11257
Q ss_pred ccEEEecCcccccC---C-----HH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 179 ADRYVSAGSIEYWP---D-----PQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~~~~---d-----~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.|++|.+-.+.... + .+ .+.+.+...|+++|+++.+..
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999886654321 1 11 345667788899999877643
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.90 E-value=0.95 Score=34.50 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=54.5
Q ss_pred EEEEEcCcc-chHHHHHHHhCCCceEEEE-eCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGT-GFTTLGIVKHVDAKNVTIL-DQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~-G~~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|.=||||. |..-.......++.+++++ |.+++-.+...+....+...-...|++++- .+...|+|+...-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~iD~v~I~tp------ 75 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLL-EDPEIDALYVPLP------ 75 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHH-HCTTCCEEEECCC------
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhh-hccccceeeeccc------
Confidence 677899985 5444444455578888875 888876655554433222222345554432 2455899886432
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
...-+.-+..+|+.|=-+++.-|..
T Consensus 76 ~~~h~~~~~~~l~~g~~v~~EKP~~ 100 (184)
T d1ydwa1 76 TSLHVEWAIKAAEKGKHILLEKPVA 100 (184)
T ss_dssp GGGHHHHHHHHHTTTCEEEECSSCS
T ss_pred chhhcchhhhhhhccceeecccccc
Confidence 1223455666677665555554443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=89.45 E-value=0.19 Score=39.06 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcC---ccchHHHHHHHhCCCceEEEEe----CCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CC
Q 019479 111 FDRNMRVVDVGG---GTGFTTLGIVKHVDAKNVTILD----QSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FP 175 (340)
Q Consensus 111 ~~~~~~vLDiGc---G~G~~~~~l~~~~~~~~v~g~D----~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~ 175 (340)
.+++.+||-+.+ |.|..+..+++.. +++|+++- -+++..+.+++.-...-+.....|..++. ..
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~ 104 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS 104 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhc
Confidence 357777877732 3567888888886 77888773 33344455554432211111111221110 01
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+|+|+-. +. ...+....+.|+|+|+++...
T Consensus 105 g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 105 GGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp TCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred cCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 3458888842 11 235677889999999998765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.14 E-value=1.6 Score=35.38 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=53.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-----------~~~ 176 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+... ..++.++.+|+.+.. ...
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 68899988887763 45556665 7899999999988877765532 245778889986521 012
Q ss_pred CCccEEEecCcccc
Q 019479 177 DYADRYVSAGSIEY 190 (340)
Q Consensus 177 ~~fD~v~~~~~l~~ 190 (340)
+..|+++.+....+
T Consensus 85 ~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 85 GKLNILVNNAGIVI 98 (259)
T ss_dssp TCCCEEEECCCCCC
T ss_pred CCceEEEECCceec
Confidence 36899998765543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.88 E-value=1.2 Score=35.95 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=51.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
.++.+|-.|++.| .+..+++.+ .+.+|+.+|.+++.++.+.+.+. ..++.++..|+.+.. -.-+.
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5788888887665 444444432 37899999999988877765532 246788899996521 11257
Q ss_pred ccEEEecCcccc
Q 019479 179 ADRYVSAGSIEY 190 (340)
Q Consensus 179 fD~v~~~~~l~~ 190 (340)
.|+++.+.....
T Consensus 88 iDilvnnag~~~ 99 (251)
T d2c07a1 88 VDILVNNAGITR 99 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceeeeecccccc
Confidence 999887655543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.43 E-value=1.2 Score=35.87 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. -.-+.
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 57888888876663 34555555 899999999998888777653 3356888999996532 01257
Q ss_pred ccEEEecCccc
Q 019479 179 ADRYVSAGSIE 189 (340)
Q Consensus 179 fD~v~~~~~l~ 189 (340)
.|+++.+-...
T Consensus 83 iDiLVnnAg~~ 93 (251)
T d1zk4a1 83 VSTLVNNAGIA 93 (251)
T ss_dssp CCEEEECCCCC
T ss_pred ceEEEeccccc
Confidence 89988765554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=88.09 E-value=0.93 Score=33.39 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=55.2
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
.+|+=+|+| ..+..+++.+ .+..++.+|.+++......+.....++.++.+|..+.. ..-+..|.|++..
T Consensus 4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~-- 79 (153)
T d1id1a_ 4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS-- 79 (153)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS--
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc--
Confidence 357777775 3444443322 26789999998865433332222357899999996632 2234578888642
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
++.. .......+.+.|.-+++...
T Consensus 80 ---~~d~~n~~~~~~~r~~~~~~~iia~~ 105 (153)
T d1id1a_ 80 ---DNDADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ---SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred ---ccHHHHHHHHHHHHHhCCCCceEEEE
Confidence 2332 23344556667777776654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.82 E-value=0.69 Score=35.17 Aligned_cols=124 Identities=12% Similarity=-0.001 Sum_probs=69.8
Q ss_pred EEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
.|==||+|.= ..+..|++. +.+|++.|.+++.++...+.........-.....+........|.++..- -.-..
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~--~~~~~ 79 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV--KAGQA 79 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS--CTTHH
T ss_pred cEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEec--CchHH
Confidence 3555777642 345555555 78999999999988877665322111111112211111122346666531 11122
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...++..+...+++|-.++-.....+. +..++.+.+.+.|...++.-..+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~---------------~~~~~~~~~~~~g~~~ldapvsG 129 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYR---------------DTMRRCRDLKDKGILFVGSGVSG 129 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHH---------------HHHHHHHHHHHTTCEEEEEEEES
T ss_pred HHHHHHHHHhccccCcEEEecCcchhH---------------HHHHHHHHHHhcCCceecccccc
Confidence 246778888899987765544433221 23456678888899888775554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.55 E-value=1.4 Score=35.61 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~----------~~~ 176 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. ...++.++.+|+.+.. -.-
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999987763 45566665 899999999988776554331 1245778889986521 012
Q ss_pred CCccEEEecCcccccCC--------HH-----------HHHHHHHHhccc--CcEEEEEc
Q 019479 177 DYADRYVSAGSIEYWPD--------PQ-----------RGIKEAYRVLKI--GGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d--------~~-----------~~l~~~~~~Lkp--gG~l~i~~ 215 (340)
+..|+++.+.......+ ++ .+.+.+.+.|+. +|.++.+.
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 47899998765543321 11 345566666743 57777664
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.31 E-value=1.3 Score=35.60 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=56.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~~ 177 (340)
.|+.+|--|++.|. .+..++++ |.+|+.+|.+++.++...+.. ...++.++.+|+.+.. ...+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 57888888888874 56666666 899999999998887766542 2356788899997632 1235
Q ss_pred CccEEEecCccccc
Q 019479 178 YADRYVSAGSIEYW 191 (340)
Q Consensus 178 ~fD~v~~~~~l~~~ 191 (340)
..|+++.+......
T Consensus 84 ~idilinnag~~~~ 97 (244)
T d1yb1a_ 84 DVSILVNNAGVVYT 97 (244)
T ss_dssp CCSEEEECCCCCCC
T ss_pred CCceeEeecccccc
Confidence 68999987766644
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.36 E-value=1.8 Score=35.23 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=65.4
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS-PHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~ 176 (340)
+++++|--|++.|. .+..++++ |.+|+.+|.+ ++.++.+.+.. ...++.+++.|+.+.. ...
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 67899988887774 55666666 8899999986 44444443321 2245778888986521 112
Q ss_pred CCccEEEecCcccccCCH--------H-----------HHHHHHHHhcccCcEEEEEc
Q 019479 177 DYADRYVSAGSIEYWPDP--------Q-----------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~--------~-----------~~l~~~~~~LkpgG~l~i~~ 215 (340)
+..|+++.+......... . ...+.+.+.|+.+|.++++.
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 568998877655443211 1 34677778888888887764
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=86.16 E-value=1.2 Score=35.92 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
.++++|--|++.|. .+..+++. +.+|+..|.+++..+.+++. +..++..|+.+.. -.-++.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKEVAEAI----GGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHHHHHHH----TCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHc----CCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 68899988877663 35555555 89999999998877766643 3467788886522 012578
Q ss_pred cEEEecCcccccC--------CHH-----------HHHHHHHHhccc--CcEEEEEc
Q 019479 180 DRYVSAGSIEYWP--------DPQ-----------RGIKEAYRVLKI--GGKACVIG 215 (340)
Q Consensus 180 D~v~~~~~l~~~~--------d~~-----------~~l~~~~~~Lkp--gG~l~i~~ 215 (340)
|+++.+....... +++ .+.+.+.+.|+. +|.++.+.
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 9988765443221 111 345566666654 57777664
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.05 E-value=1.1 Score=36.35 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCCEEEEEcCccc---hHHHHHHHhCCCceEEEE-eCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGTG---FTTLGIVKHVDAKNVTIL-DQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----------~~~ 176 (340)
.|++||-.|++.| ..+..+++. +.+|+.. +.++...+.+.+.. ...++.++.+|+.+.. ..-
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 6888997776655 455556665 7888875 55666666655442 2246788999996521 122
Q ss_pred CCccEEEecCcccccCCHH-------------------HHHHHHHHhcccCcEEEEEc
Q 019479 177 DYADRYVSAGSIEYWPDPQ-------------------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~-------------------~~l~~~~~~LkpgG~l~i~~ 215 (340)
+..|+++.+....+..+.. ...+.+...|+.+|.++++.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 5689999876665543221 45677778888888877764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.01 E-value=3.4 Score=32.86 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC------CCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------FPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v~ 183 (340)
.++++|--|++.|. .+..+++. +.+|+.+|.+++.++...+.. .++..++.|+.+.. -.-++.|+++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 79 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKEC--PGIEPVCVDLGDWDATEKALGGIGPVDLLV 79 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence 58899988887763 45555555 899999999988877766554 45778888986522 1225789999
Q ss_pred ecCccc
Q 019479 184 SAGSIE 189 (340)
Q Consensus 184 ~~~~l~ 189 (340)
.+-...
T Consensus 80 nnAg~~ 85 (242)
T d1cyda_ 80 NNAALV 85 (242)
T ss_dssp ECCCCC
T ss_pred ECCccc
Confidence 775544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=85.96 E-value=0.55 Score=35.26 Aligned_cols=125 Identities=15% Similarity=0.047 Sum_probs=61.6
Q ss_pred CCCEEEEEcCcc-chH-HHHHHHhCCCceEEEEeCCHHHH-HHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGT-GFT-TLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~g~D~s~~~~-~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.+.+||=||.|. |.. +..+... +..+++.+.-+.+-. +.+++. . . ...+++++.-.-..||+|+....-.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~-~---~--~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL-G---G--EAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH-T---C--EECCGGGHHHHHHTCSEEEECCSSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhh-h---c--ccccchhHHHHhccCCEEEEecCCC
Confidence 678999999853 222 2233333 335798888885443 344432 1 1 2233433321224699999876543
Q ss_pred c-cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 190 Y-WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 190 ~-~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
+ +-+. ..++...+.-+.+.-+++.+...|...............++.+++.++.+
T Consensus 96 ~~ii~~-~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l~~~~~ 151 (159)
T d1gpja2 96 HPVIHV-DDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIAR 151 (159)
T ss_dssp SCCBCH-HHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHH
T ss_pred CccccH-hhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHHHHHHH
Confidence 3 2222 34444444434455566776554422111111111112346666666554
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.82 E-value=0.68 Score=40.35 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=38.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHh
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~ 156 (340)
.++..++|||+-.|.++..++...++ .+|+++|+++...+..+++
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkN 257 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV 257 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHH
Confidence 57789999999999999888776544 5899999999998888765
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=84.53 E-value=2.7 Score=33.84 Aligned_cols=76 Identities=9% Similarity=0.011 Sum_probs=52.9
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-----------~~~ 176 (340)
+++++|-.|+..|. .+..+++. +.+|+.+|.+++.++.+.+... ..++.++..|+.+.. ...
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 68999999987763 45556665 8899999999988777665422 245777889996521 113
Q ss_pred CCccEEEecCcccc
Q 019479 177 DYADRYVSAGSIEY 190 (340)
Q Consensus 177 ~~fD~v~~~~~l~~ 190 (340)
+..|+++.+.....
T Consensus 83 g~idilinnag~~~ 96 (258)
T d1ae1a_ 83 GKLNILVNNAGVVI 96 (258)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCcEEEeccccccc
Confidence 56888887655543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=84.45 E-value=1.2 Score=36.04 Aligned_cols=103 Identities=13% Similarity=0.018 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----C------------------------------------CceEEEEeCCHHHHH
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----D------------------------------------AKNVTILDQSPHQLA 151 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----~------------------------------------~~~v~g~D~s~~~~~ 151 (340)
..+..++|--||+|.+.++.+-.. | ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 356789999999999988865421 1 124578888888888
Q ss_pred HHHH---h---CC-CCCcEEEEcCCCCCC-----CCCCCccEEEecCcccccC-----C----HHHHHHHHHHhcccCcE
Q 019479 152 KAKQ---K---EP-LKECTIIEGDAEDLP-----FPTDYADRYVSAGSIEYWP-----D----PQRGIKEAYRVLKIGGK 210 (340)
Q Consensus 152 ~a~~---~---~~-~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~-----d----~~~~l~~~~~~LkpgG~ 210 (340)
.|++ + .. ...+.+.+.|+.+.. .+....++|+++--...-- . ...+...+.+++.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 7742 2 22 245888899986532 1234578999975554321 1 12455567777755455
Q ss_pred EEEE
Q 019479 211 ACVI 214 (340)
Q Consensus 211 l~i~ 214 (340)
++++
T Consensus 209 ~~it 212 (249)
T d1o9ga_ 209 IAVT 212 (249)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=84.24 E-value=1.4 Score=32.71 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=66.0
Q ss_pred EEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|.= ..+..+++. +.+|++.|.++...+...+.. .. ...+..+. ....|+|++ .+++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~----~~-~~~~~~e~---~~~~d~ii~-----~v~~ 66 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAAG----AE-TASTAKAI---AEQCDVIIT-----MLPN 66 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT----CE-ECSSHHHH---HHHCSEEEE-----CCSS
T ss_pred EEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHhh----hh-hcccHHHH---HhCCCeEEE-----EcCC
Confidence 4556788752 344555555 789999999999888887542 11 22222221 234688887 3445
Q ss_pred HH---HHH---HHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 194 PQ---RGI---KEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 194 ~~---~~l---~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.. .++ ..+...+++|-.++-.....+. +..++.+.+++.|...++.-..
T Consensus 67 ~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~---------------~~~~~~~~~~~~g~~~vdapv~ 121 (161)
T d1vpda2 67 SPHVKEVALGENGIIEGAKPGTVLIDMSSIAPL---------------ASREISDALKAKGVEMLDAPVS 121 (161)
T ss_dssp HHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHH---------------HHHHHHHHHHTTTCEEEECCEE
T ss_pred HHHHHHHHhCCcchhhccCCCCEEEECCCCCHH---------------HHHHHHHHHHHcCCceeccccc
Confidence 44 333 3466777886655444333322 2356667888888877665443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.13 E-value=3.1 Score=33.13 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+.. +..++.+|+.+.. -.-+..
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 78 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEAV---GAHPVVMDVADPASVERGFAEALAHLGRL 78 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT---TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc---CCeEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 57889988987763 34555555 889999999998888877643 4677888986522 011468
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 79 DilVnnAG~~ 88 (242)
T d1ulsa_ 79 DGVVHYAGIT 88 (242)
T ss_dssp CEEEECCCCC
T ss_pred eEEEECCccc
Confidence 9888765443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.35 E-value=2.2 Score=31.95 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=56.9
Q ss_pred CEEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEE------EEcCCCCCCCCCCCccEE
Q 019479 115 MRVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTI------IEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 115 ~~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~------~~~d~~~~~~~~~~fD~v 182 (340)
++|--||+|.-. ++..|++. +.+|+.+|.+++-++..++... .+.... ...|..+ .-..+|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HHTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---HhcCCCEE
Confidence 578889998643 34445554 7899999999988888775421 011111 1111111 11457999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEE
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i 213 (340)
++.-- -.....+++++...++++-.+++
T Consensus 77 ii~v~---~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIVVP---AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence 87432 22446889999999999876554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=1.6 Score=35.40 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~----------~~~ 176 (340)
+|+++|-.|+++|. .+..++++ |.+|+.++.+++.++.+.+. .....+.+...|..+.. ...
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 68899999988873 45566665 89999999999988877654 12244666777775421 112
Q ss_pred CCccEEEecCcccc
Q 019479 177 DYADRYVSAGSIEY 190 (340)
Q Consensus 177 ~~fD~v~~~~~l~~ 190 (340)
+..|+++.+....+
T Consensus 91 g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 91 GGLDMLILNHITNT 104 (269)
T ss_dssp TSCSEEEECCCCCC
T ss_pred CCcccccccccccc
Confidence 46788887655543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=83.18 E-value=2.3 Score=34.38 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=52.7
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
+++++|-.|++.|. .+..+++. +.+|+.+|.+++.++.+.+... ..++.++.+|+.+.. -.-+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 68899999988774 34555555 8899999999988887776533 345778889986521 11257
Q ss_pred ccEEEecCcc
Q 019479 179 ADRYVSAGSI 188 (340)
Q Consensus 179 fD~v~~~~~l 188 (340)
.|+++.+...
T Consensus 83 iD~lVnnAG~ 92 (268)
T d2bgka1 83 LDIMFGNVGV 92 (268)
T ss_dssp CCEEEECCCC
T ss_pred cceecccccc
Confidence 8999976554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.06 E-value=0.54 Score=38.31 Aligned_cols=86 Identities=17% Similarity=0.028 Sum_probs=51.2
Q ss_pred EEEEcCCCCC--CCCCCCccEEEecCccc----cc-------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh
Q 019479 163 TIIEGDAEDL--PFPTDYADRYVSAGSIE----YW-------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD 229 (340)
Q Consensus 163 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~~-------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 229 (340)
.|+.+|..+. .++++++|+|+..--.. .. ......+.++.|+|||+|.+++..........
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~------ 79 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA------ 79 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT------
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc------
Confidence 3566666442 35678889888753321 11 11247789999999999999886432211000
Q ss_pred HhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 230 VWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 230 ~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
........+..+++..||.......
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~i~ 104 (279)
T d1eg2a_ 80 --GSGDLISIISHMRQNSKMLLANLII 104 (279)
T ss_dssp --TBCCHHHHHHHHHHHCCCEEEEEEE
T ss_pred --cccchhhHHHHHHhccCceeeeeee
Confidence 0011234455678899999765543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=82.09 E-value=2.6 Score=33.71 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=48.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHH-HHHHHHhCCCCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
+++.+|--|++.|. .+..+++. +.+|+.+|.++.. .+...+.. ..++.++.+|+.+.. -.-+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVE--GADIAIADLVPAPEAEAAIRNL-GRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHHHc-CCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 57888888877663 45555555 8899999987632 22222222 256788899996532 01257
Q ss_pred ccEEEecCccccc
Q 019479 179 ADRYVSAGSIEYW 191 (340)
Q Consensus 179 fD~v~~~~~l~~~ 191 (340)
.|+++.+......
T Consensus 81 iDilVnnAG~~~~ 93 (247)
T d2ew8a1 81 CDILVNNAGIYPL 93 (247)
T ss_dssp CCEEEECCCCCCC
T ss_pred CCEEEECCCCCCC
Confidence 8999887655443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.05 E-value=1.9 Score=34.81 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=62.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCC-HHHHHHHHHhC---CCCCcEEEEcCCCCCC----------CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQS-PHQLAKAKQKE---PLKECTIIEGDAEDLP----------FP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~---~~~~i~~~~~d~~~~~----------~~ 175 (340)
+++++|--|++.|. .+..|++. +.+|+.+|.+ +..++.+.+.. ...++.++..|+.+.. -.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57888877777664 45556665 8899999986 45555544321 1246788899997632 01
Q ss_pred CCCccEEEecCcccccCC--------HH-----------HHHHHHHHhccc--CcEEEEEcc
Q 019479 176 TDYADRYVSAGSIEYWPD--------PQ-----------RGIKEAYRVLKI--GGKACVIGP 216 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d--------~~-----------~~l~~~~~~Lkp--gG~l~i~~~ 216 (340)
-+..|+++.+-...+... ++ ...+.+.+.++. +|+++.+..
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS 142 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIAS 142 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccc
Confidence 156899987755443321 11 234555566643 578877643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.66 E-value=1.5 Score=34.87 Aligned_cols=76 Identities=11% Similarity=0.070 Sum_probs=47.7
Q ss_pred EEEcCCCCC--CCCCCCccEEEecCccc-------ccCCH-------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHh
Q 019479 164 IIEGDAEDL--PFPTDYADRYVSAGSIE-------YWPDP-------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF 227 (340)
Q Consensus 164 ~~~~d~~~~--~~~~~~fD~v~~~~~l~-------~~~d~-------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 227 (340)
++++|..+. .++++++|+|+..--.. ...+. ...++++.|+|+|||.+++.....
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~--------- 77 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF--------- 77 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH---------
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCch---------
Confidence 566676441 25677888888753321 11112 257889999999999987653210
Q ss_pred hhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 228 ADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
....+...+.+.||.......
T Consensus 78 --------~~~~~~~~~~~~g~~~~~~ii 98 (256)
T d1g60a_ 78 --------NCAFICQYLVSKGMIFQNWIT 98 (256)
T ss_dssp --------HHHHHHHHHHHTTCEEEEEEE
T ss_pred --------hhhhhhhhhhcccceeeeeeE
Confidence 123456778899998766543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.63 E-value=3.3 Score=27.82 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCCCEEEEEcC-ccc--hHHHHHHHhCCCceEEEEeCCH-HHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGG-GTG--FTTLGIVKHVDAKNVTILDQSP-HQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGc-G~G--~~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
...++|.=||. |+| .++..+.++ |.+|+|.|... ...+...+ .++.+..+...+. -...|+|+.+..
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~~~---i~~~d~vV~S~A 76 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ----AGAKIYIGHAEEH---IEGASVVVVSSA 76 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH----TTCEEEESCCGGG---GTTCSEEEECTT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH----CCCeEEECCcccc---CCCCCEEEECCC
Confidence 45678888875 466 345666666 89999999853 22233332 4566666555331 134799888776
Q ss_pred cc
Q 019479 188 IE 189 (340)
Q Consensus 188 l~ 189 (340)
+-
T Consensus 77 I~ 78 (96)
T d1p3da1 77 IK 78 (96)
T ss_dssp SC
T ss_pred cC
Confidence 53
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=80.54 E-value=9.6 Score=28.64 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=81.1
Q ss_pred CCEEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------CC------------CcEEEEcCCCC
Q 019479 114 NMRVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LK------------ECTIIEGDAED 171 (340)
Q Consensus 114 ~~~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~~------------~i~~~~~d~~~ 171 (340)
-++|--||+|+=. ++..++.. |.+|+.+|.+++.++.+.++.. .. ++. ...+...
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 80 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGD 80 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-ccccccc
Confidence 3568889998632 34455554 8999999999999888765411 00 122 1223222
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH------------hhhHhhc------
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF------------FADVWML------ 233 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~~~------ 233 (340)
-...|+|+- .+.+.++-..++++++.+.++|+-.+.-.....+....... +++.+..
T Consensus 81 ----~~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv 155 (186)
T d1wdka3 81 ----FGNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVI 155 (186)
T ss_dssp ----GGGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEE
T ss_pred ----ccccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEEC
Confidence 123688885 55555555568999999999998887666544432221111 1111100
Q ss_pred ---CC---CHHHHHHHHHHCCCcEEEEEE
Q 019479 234 ---FP---KEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 234 ---~~---~~~~~~~~l~~aGF~~v~~~~ 256 (340)
.. +.+...++++..|...+.+.+
T Consensus 156 ~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 156 RGEKSSDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 01 246677888999999887654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.40 E-value=2.5 Score=33.80 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=54.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~f 179 (340)
+++++|--|++.|. .+..+++. +.+|+.+|.+++.++.+.+... .++.++.+|+.+.. ..-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh-CcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 67889988988773 45566665 8899999999998887776654 46778889986522 112568
Q ss_pred cEEEecCcccc
Q 019479 180 DRYVSAGSIEY 190 (340)
Q Consensus 180 D~v~~~~~l~~ 190 (340)
|+++.+-...+
T Consensus 82 dilinnAG~~~ 92 (244)
T d1nffa_ 82 HVLVNNAGILN 92 (244)
T ss_dssp CEEEECCCCCC
T ss_pred eEEEECCcccC
Confidence 99887655543
|