Citrus Sinensis ID: 019487
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 340 | ||||||
| 255575275 | 361 | conserved hypothetical protein [Ricinus | 0.973 | 0.916 | 0.728 | 1e-140 | |
| 225446613 | 338 | PREDICTED: uncharacterized protein LOC10 | 0.961 | 0.967 | 0.717 | 1e-137 | |
| 147770695 | 338 | hypothetical protein VITISV_018738 [Viti | 0.961 | 0.967 | 0.714 | 1e-137 | |
| 118489593 | 343 | unknown [Populus trichocarpa x Populus d | 0.973 | 0.965 | 0.695 | 1e-133 | |
| 21593011 | 350 | unknown [Arabidopsis thaliana] | 0.967 | 0.94 | 0.677 | 1e-131 | |
| 18402535 | 350 | ATP synthase protein I [Arabidopsis thal | 0.967 | 0.94 | 0.674 | 1e-130 | |
| 297826533 | 350 | hypothetical protein ARALYDRAFT_482029 [ | 0.979 | 0.951 | 0.664 | 1e-129 | |
| 388496336 | 340 | unknown [Lotus japonicus] | 0.976 | 0.976 | 0.649 | 1e-123 | |
| 449465218 | 338 | PREDICTED: uncharacterized protein LOC10 | 0.961 | 0.967 | 0.660 | 1e-123 | |
| 357474593 | 341 | ATP synthase protein I [Medicago truncat | 0.976 | 0.973 | 0.645 | 1e-121 |
| >gi|255575275|ref|XP_002528541.1| conserved hypothetical protein [Ricinus communis] gi|223532043|gb|EEF33853.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/342 (72%), Positives = 284/342 (83%), Gaps = 11/342 (3%)
Query: 1 MAVLNYIPVTATSAPISQDSSSTSSSVPTT-RPTKILLPKKKSMKWSTGVAPGEYGGPPT 59
MA+LNYI VT+T+APISQDSS+ R TK++LPKKK +KWSTGVAPG+YGGPPT
Sbjct: 1 MAILNYISVTSTAAPISQDSSTPPPPQIPDPRQTKVILPKKKPLKWSTGVAPGDYGGPPT 60
Query: 60 TTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIEDTDESSAEKFPVQEEPSGFLSLNR 119
TTKLRK+WGGE EDPLTSDEFIWN DFM RMKRL++D D S E VQEE SGFLSLNR
Sbjct: 61 TTKLRKYWGGEDEDPLTSDEFIWNKDFMSRMKRLVQDPDIPSLEPTSVQEESSGFLSLNR 120
Query: 120 VMSLD------SKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKA 173
VMSLD +KEL K + EAA + S ++ KWRLAPTRREQ+KWDKA
Sbjct: 121 VMSLDNLEVDLTKELMRTPKLVPKVSAEAATKGSD----TIATKWRLAPTRREQEKWDKA 176
Query: 174 TKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYS 233
TKAATGGSDV+ RE+RKPRGDPE+LAAQS+EQYFKLK+KLQ LTLG+GGVGLVSAYISYS
Sbjct: 177 TKAATGGSDVLLREIRKPRGDPELLAAQSREQYFKLKNKLQILTLGVGGVGLVSAYISYS 236
Query: 234 PEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNE 293
PEIAASF AGL+GSLVY+RMLGS++DSMA GAKGL+KGA+GQPRLLVPVVLVMIYNRWN
Sbjct: 237 PEIAASFGAGLIGSLVYMRMLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNG 296
Query: 294 ITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKK 335
I VP+YG +HLELIPMLVGFFTYKIATF QA+EEAV++ +K
Sbjct: 297 ILVPDYGLMHLELIPMLVGFFTYKIATFVQAIEEAVTVAVEK 338
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446613|ref|XP_002280622.1| PREDICTED: uncharacterized protein LOC100243760 [Vitis vinifera] gi|302143424|emb|CBI21985.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147770695|emb|CAN77926.1| hypothetical protein VITISV_018738 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|118489593|gb|ABK96598.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
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| >gi|21593011|gb|AAM64960.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18402535|ref|NP_565711.1| ATP synthase protein I [Arabidopsis thaliana] gi|3746067|gb|AAC63842.1| expressed protein [Arabidopsis thaliana] gi|15215861|gb|AAK91474.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|19699268|gb|AAL91000.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|20197222|gb|AAM14978.1| expressed protein [Arabidopsis thaliana] gi|330253388|gb|AEC08482.1| ATP synthase protein I [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297826533|ref|XP_002881149.1| hypothetical protein ARALYDRAFT_482029 [Arabidopsis lyrata subsp. lyrata] gi|297326988|gb|EFH57408.1| hypothetical protein ARALYDRAFT_482029 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|388496336|gb|AFK36234.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|449465218|ref|XP_004150325.1| PREDICTED: uncharacterized protein LOC101216352 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357474593|ref|XP_003607581.1| ATP synthase protein I [Medicago truncatula] gi|355508636|gb|AES89778.1| ATP synthase protein I [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 340 | ||||||
| TAIR|locus:2052836 | 350 | AT2G31040 [Arabidopsis thalian | 0.9 | 0.874 | 0.633 | 4.1e-104 |
| TAIR|locus:2052836 AT2G31040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 199/314 (63%), Positives = 239/314 (76%)
Query: 34 KILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRL 93
KI+LP KK KWSTGVAPGEYGGPPTTTKLRK+WGGEKEDP+TS + IWN DFM +MK+L
Sbjct: 29 KIILPNKKPEKWSTGVAPGEYGGPPTTTKLRKYWGGEKEDPITSTDLIWNRDFMDQMKKL 88
Query: 94 IEDTDESSAEKFPVQEEPSGFLSLNRVMSLDS------KELTADSKTALQQPVEAAIQDS 147
+D ++SS + P +E+ SGFLS +RVMSLDS KEL + SK+ ++ ++ + ++
Sbjct: 89 FDDPNDSSLDPSPSKEKSSGFLSFSRVMSLDSMDVDLSKELASSSKSVVKNRLDTSKSEA 148
Query: 148 --QQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQ 205
Q V KW+LAPTRREQ+KWD+ATKAATGGSDVMFRELR+PRGDPEV AA+ +EQ
Sbjct: 149 KKQMSKAIVSPKWKLAPTRREQEKWDRATKAATGGSDVMFRELRRPRGDPEVQAAKDREQ 208
Query: 206 YFKLKSKLQFLTLGIGGVGLVSAYISYSPEIXXXXXXXXXXXXVYIRMLGSTVDSXXXXX 265
YFKLK+K+Q LTLGIGGVGLVSAYISY+PEI Y+RMLG++VD+
Sbjct: 209 YFKLKNKIQVLTLGIGGVGLVSAYISYTPEIALSFGAGLLGSLAYMRMLGNSVDAMADGA 268
Query: 266 XXXXXXXXXQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAV 325
QPRLLVPVVLVMI+NRWN I VPEYGF+HLELIPMLVGFFTYKIATFFQA+
Sbjct: 269 RGVAKGAANQPRLLVPVVLVMIFNRWNAILVPEYGFMHLELIPMLVGFFTYKIATFFQAI 328
Query: 326 EEAVSIVEKKDPDI 339
EEA+SI +K I
Sbjct: 329 EEAISITTQKPESI 342
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 340 292 0.00090 115 3 11 22 0.41 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 592 (63 KB)
Total size of DFA: 201 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.59u 0.11s 24.70t Elapsed: 00:00:01
Total cpu time: 24.59u 0.11s 24.70t Elapsed: 00:00:01
Start: Mon May 20 15:06:33 2013 End: Mon May 20 15:06:34 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 340 | |||
| pfam03899 | 99 | pfam03899, ATP_synt_I, ATP synthase I chain | 7e-07 |
| >gnl|CDD|217784 pfam03899, ATP_synt_I, ATP synthase I chain | Back alignment and domain information |
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Score = 46.4 bits (111), Expect = 7e-07
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 212 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV----DSMAAGAKG 267
+L + L + V + ++ +A S G L SL+ + ++A AK
Sbjct: 1 RLLLIQLILLAVLALGWGLTGGLTVALSALLGGLISLLNFALFARRAFRFGGAIARKAKK 60
Query: 268 LMKG-AVGQP-RLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFF 314
++ +G+ RL + + L ++ + + L L+ + +G
Sbjct: 61 AVRSFYLGEAIRLALTIALFVLA----------FKYPKLSLLALFLGLL 99
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Length = 99 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 340 | |||
| PF03899 | 100 | ATP_synt_I: ATP synthase I chain; InterPro: IPR005 | 98.12 | |
| PF12966 | 85 | AtpR: N-ATPase, AtpR subunit | 94.21 | |
| PRK05760 | 124 | F0F1 ATP synthase subunit I; Validated | 92.49 | |
| PRK06099 | 126 | F0F1 ATP synthase subunit I; Validated | 89.52 | |
| PRK08049 | 124 | F0F1 ATP synthase subunit I; Validated | 86.82 | |
| COG3312 | 128 | AtpI F0F1-type ATP synthase, subunit I [Energy pro | 81.64 |
| >PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
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Probab=98.12 E-value=1.1e-05 Score=63.39 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc----ccccc--CCCCCCchHHHHHHHH
Q 019487 213 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA----KGLMK--GAVGQPRLLVPVVLVM 286 (340)
Q Consensus 213 LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~----~g~~~--galgqpRLLVPV~Lvv 286 (340)
+...++.+++++.+.+++.++.+.++|+++|++.+++...++.+.++++.+.. ++..+ ...---|+++-+++++
T Consensus 2 i~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~~ 81 (100)
T PF03899_consen 2 IVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLFI 81 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999996664211 11111 0012357888888888
Q ss_pred HHHHhhccccCCccccchhHHHHHHHHH
Q 019487 287 IYNRWNEITVPEYGFLHLELIPMLVGFF 314 (340)
Q Consensus 287 ~a~rwn~i~~p~~g~~~LeLlP~llGFL 314 (340)
+..++.. +++.++.++||+
T Consensus 82 ~~~~~~~---------~~~~~~~~~Gl~ 100 (100)
T PF03899_consen 82 LAFKFPP---------ELNPIALLIGLL 100 (100)
T ss_pred HHHHHHc---------ccHHHHHHHHHC
Confidence 8888832 488999999985
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ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases []. |
| >PF12966 AtpR: N-ATPase, AtpR subunit | Back alignment and domain information |
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| >PRK05760 F0F1 ATP synthase subunit I; Validated | Back alignment and domain information |
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| >PRK06099 F0F1 ATP synthase subunit I; Validated | Back alignment and domain information |
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| >PRK08049 F0F1 ATP synthase subunit I; Validated | Back alignment and domain information |
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| >COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 340 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 46.8 bits (110), Expect = 7e-06
Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 43/185 (23%)
Query: 74 PLTSDEFIWNNDFMPRMKRLIEDTDE---SSAEKFPVQEEPSGFLSLNRVMSLDSKELTA 130
+ D F+ N D + ++D + S E + R+ L +
Sbjct: 23 SVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLS 73
Query: 131 DSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRK 190
+ +Q+ VE ++ + K+ ++P + E + T M+ E R
Sbjct: 74 KQEEMVQKFVEEVLRINY--------KFLMSPIKTE----QRQPSMMT----RMYIEQRD 117
Query: 191 P-RGDPEVLAAQS---KEQYFKLKSKLQ------FLTL-GIGGVG---LV-SAYISYSPE 235
D +V A + + Y KL+ L + + G+ G G + +SY +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 236 IAASF 240
F
Sbjct: 178 CKMDF 182
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00