Citrus Sinensis ID: 019487


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MAVLNYIPVTATSAPISQDSSSTSSSVPTTRPTKILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIEDTDESSAEKFPVQEEPSGFLSLNRVMSLDSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKKDPDIV
ccccEEEEccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cEEEEEEEEEcccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccccccccHHHHccHHccccccccccccccHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
mavlnyipvtatsapisqdssstsssvpttrptkillpkkksmkwstgvapgeyggpptttklrkfwggekedpltsdefiwnndfmpRMKRLIEdtdessaekfpvqeepsgflslnrvmsldskeltadSKTALQQPVEAAIQDSqqksgsvprkwrlaptrreqdkwdkatkaatggsdvmfrelrkprgdpevlAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKglmkgavgqprlLVPVVLVMIYNrwneitvpeygfLHLELIPMLVGFFTYKIATFFQAVEEAVSIvekkdpdiv
mavlnyipvtatsapisqdssstsssvpttrptkillpkkksmkwstgvapgeyggppttTKLRKFWGGekedpltsdefiwnndFMPRMKRLIEDTDESsaekfpvqeepsgflslNRVMSLDSKELTADSKTALQQPVEAAiqdsqqksgsvprkwrlaptrreqdkwdkatkaatggsdvmfrelRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLmkgavgqprLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAvsivekkdpdiv
MAVLNYIPVTAtsapisqdssstsssvpttrptKILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIEDTDESSAEKFPVQEEPSGFLSLNRVMSLDSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIaasfaagllgslVYIRMLGSTVDSmaagakglmkgavgQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKKDPDIV
***************************************************************RKFWG*******TSDEFIWNNDFM*********************************************************************************************************************QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIV********
*AVLNYIPVTA******************************************YGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRM************************LSLNRVMSLDSKELT******************************************************************************KLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV*******************LLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV***********
MAVLNYIPVTATSA*****************PTKILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIED*************EPSGFLSLNRVMSLDSKELTADSKTALQQPV****************KWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKKDPDIV
MAVLNYIPVTATS*****************RPTKILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIED*************************SL*********************************************KWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG********VGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSI*********
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SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MAVLNYIPVTATSAPISQDSSSTSSSVPTTRPTKILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIEDTDESSAEKFPVQEEPSGFLSLNRVMSLDSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKKDPDIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
P08443118 ATP synthase protein I OS yes no 0.323 0.932 0.312 4e-08
P12403122 ATP synthase protein I OS yes no 0.323 0.901 0.288 1e-06
Q05376115 ATP synthase protein I OS N/A no 0.3 0.886 0.264 3e-05
>sp|P08443|ATPZ_SYNP6 ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1 Back     alignment and function desciption
 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)

Query: 205 QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 264
           +Y+ L+ +L  +TL    V   + + +YS   AAS+  G +G L+Y+RMLG  V+ +   
Sbjct: 3   EYYALQRQLLQVTLICTVVIFGAVWWAYSLNTAASYLLGAMGGLLYLRMLGKAVERI--- 59

Query: 265 AKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQA 324
             G  +   G+ RL + VVL+++  RW           +LEL+P+ +GF TYK A  +  
Sbjct: 60  --GERRRQFGKSRLALFVVLIVLAARWQ----------YLELMPVFLGFLTYKAALIWYT 107

Query: 325 VEEAV 329
           +   +
Sbjct: 108 LRAVI 112




A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)
>sp|P12403|ATPZ_NOSS1 ATP synthase protein I OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=atpI PE=3 SV=2 Back     alignment and function description
>sp|Q05376|ATPZ_SYNP1 ATP synthase protein I OS=Synechococcus sp. (strain PCC 6716) GN=atpI PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
255575275361 conserved hypothetical protein [Ricinus 0.973 0.916 0.728 1e-140
225446613338 PREDICTED: uncharacterized protein LOC10 0.961 0.967 0.717 1e-137
147770695338 hypothetical protein VITISV_018738 [Viti 0.961 0.967 0.714 1e-137
118489593343 unknown [Populus trichocarpa x Populus d 0.973 0.965 0.695 1e-133
21593011350 unknown [Arabidopsis thaliana] 0.967 0.94 0.677 1e-131
18402535350 ATP synthase protein I [Arabidopsis thal 0.967 0.94 0.674 1e-130
297826533350 hypothetical protein ARALYDRAFT_482029 [ 0.979 0.951 0.664 1e-129
388496336340 unknown [Lotus japonicus] 0.976 0.976 0.649 1e-123
449465218338 PREDICTED: uncharacterized protein LOC10 0.961 0.967 0.660 1e-123
357474593341 ATP synthase protein I [Medicago truncat 0.976 0.973 0.645 1e-121
>gi|255575275|ref|XP_002528541.1| conserved hypothetical protein [Ricinus communis] gi|223532043|gb|EEF33853.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/342 (72%), Positives = 284/342 (83%), Gaps = 11/342 (3%)

Query: 1   MAVLNYIPVTATSAPISQDSSSTSSSVPTT-RPTKILLPKKKSMKWSTGVAPGEYGGPPT 59
           MA+LNYI VT+T+APISQDSS+         R TK++LPKKK +KWSTGVAPG+YGGPPT
Sbjct: 1   MAILNYISVTSTAAPISQDSSTPPPPQIPDPRQTKVILPKKKPLKWSTGVAPGDYGGPPT 60

Query: 60  TTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIEDTDESSAEKFPVQEEPSGFLSLNR 119
           TTKLRK+WGGE EDPLTSDEFIWN DFM RMKRL++D D  S E   VQEE SGFLSLNR
Sbjct: 61  TTKLRKYWGGEDEDPLTSDEFIWNKDFMSRMKRLVQDPDIPSLEPTSVQEESSGFLSLNR 120

Query: 120 VMSLD------SKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKA 173
           VMSLD      +KEL    K   +   EAA + S     ++  KWRLAPTRREQ+KWDKA
Sbjct: 121 VMSLDNLEVDLTKELMRTPKLVPKVSAEAATKGSD----TIATKWRLAPTRREQEKWDKA 176

Query: 174 TKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKLKSKLQFLTLGIGGVGLVSAYISYS 233
           TKAATGGSDV+ RE+RKPRGDPE+LAAQS+EQYFKLK+KLQ LTLG+GGVGLVSAYISYS
Sbjct: 177 TKAATGGSDVLLREIRKPRGDPELLAAQSREQYFKLKNKLQILTLGVGGVGLVSAYISYS 236

Query: 234 PEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNE 293
           PEIAASF AGL+GSLVY+RMLGS++DSMA GAKGL+KGA+GQPRLLVPVVLVMIYNRWN 
Sbjct: 237 PEIAASFGAGLIGSLVYMRMLGSSIDSMADGAKGLIKGAIGQPRLLVPVVLVMIYNRWNG 296

Query: 294 ITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVSIVEKK 335
           I VP+YG +HLELIPMLVGFFTYKIATF QA+EEAV++  +K
Sbjct: 297 ILVPDYGLMHLELIPMLVGFFTYKIATFVQAIEEAVTVAVEK 338




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446613|ref|XP_002280622.1| PREDICTED: uncharacterized protein LOC100243760 [Vitis vinifera] gi|302143424|emb|CBI21985.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147770695|emb|CAN77926.1| hypothetical protein VITISV_018738 [Vitis vinifera] Back     alignment and taxonomy information
>gi|118489593|gb|ABK96598.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|21593011|gb|AAM64960.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18402535|ref|NP_565711.1| ATP synthase protein I [Arabidopsis thaliana] gi|3746067|gb|AAC63842.1| expressed protein [Arabidopsis thaliana] gi|15215861|gb|AAK91474.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|19699268|gb|AAL91000.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|20197222|gb|AAM14978.1| expressed protein [Arabidopsis thaliana] gi|330253388|gb|AEC08482.1| ATP synthase protein I [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297826533|ref|XP_002881149.1| hypothetical protein ARALYDRAFT_482029 [Arabidopsis lyrata subsp. lyrata] gi|297326988|gb|EFH57408.1| hypothetical protein ARALYDRAFT_482029 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388496336|gb|AFK36234.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449465218|ref|XP_004150325.1| PREDICTED: uncharacterized protein LOC101216352 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357474593|ref|XP_003607581.1| ATP synthase protein I [Medicago truncatula] gi|355508636|gb|AES89778.1| ATP synthase protein I [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2052836350 AT2G31040 [Arabidopsis thalian 0.9 0.874 0.633 4.1e-104
TAIR|locus:2052836 AT2G31040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 199/314 (63%), Positives = 239/314 (76%)

Query:    34 KILLPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRL 93
             KI+LP KK  KWSTGVAPGEYGGPPTTTKLRK+WGGEKEDP+TS + IWN DFM +MK+L
Sbjct:    29 KIILPNKKPEKWSTGVAPGEYGGPPTTTKLRKYWGGEKEDPITSTDLIWNRDFMDQMKKL 88

Query:    94 IEDTDESSAEKFPVQEEPSGFLSLNRVMSLDS------KELTADSKTALQQPVEAAIQDS 147
              +D ++SS +  P +E+ SGFLS +RVMSLDS      KEL + SK+ ++  ++ +  ++
Sbjct:    89 FDDPNDSSLDPSPSKEKSSGFLSFSRVMSLDSMDVDLSKELASSSKSVVKNRLDTSKSEA 148

Query:   148 --QQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQ 205
               Q     V  KW+LAPTRREQ+KWD+ATKAATGGSDVMFRELR+PRGDPEV AA+ +EQ
Sbjct:   149 KKQMSKAIVSPKWKLAPTRREQEKWDRATKAATGGSDVMFRELRRPRGDPEVQAAKDREQ 208

Query:   206 YFKLKSKLQFLTLGIGGVGLVSAYISYSPEIXXXXXXXXXXXXVYIRMLGSTVDSXXXXX 265
             YFKLK+K+Q LTLGIGGVGLVSAYISY+PEI             Y+RMLG++VD+     
Sbjct:   209 YFKLKNKIQVLTLGIGGVGLVSAYISYTPEIALSFGAGLLGSLAYMRMLGNSVDAMADGA 268

Query:   266 XXXXXXXXXQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAV 325
                      QPRLLVPVVLVMI+NRWN I VPEYGF+HLELIPMLVGFFTYKIATFFQA+
Sbjct:   269 RGVAKGAANQPRLLVPVVLVMIFNRWNAILVPEYGFMHLELIPMLVGFFTYKIATFFQAI 328

Query:   326 EEAVSIVEKKDPDI 339
             EEA+SI  +K   I
Sbjct:   329 EEAISITTQKPESI 342


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      340       292   0.00090  115 3  11 22  0.41    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  201 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.59u 0.11s 24.70t   Elapsed:  00:00:01
  Total cpu time:  24.59u 0.11s 24.70t   Elapsed:  00:00:01
  Start:  Mon May 20 15:06:33 2013   End:  Mon May 20 15:06:34 2013


GO:0005886 "plasma membrane" evidence=ISM
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
pfam0389999 pfam03899, ATP_synt_I, ATP synthase I chain 7e-07
>gnl|CDD|217784 pfam03899, ATP_synt_I, ATP synthase I chain Back     alignment and domain information
 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 212 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV----DSMAAGAKG 267
           +L  + L +  V  +   ++    +A S   G L SL+   +          ++A  AK 
Sbjct: 1   RLLLIQLILLAVLALGWGLTGGLTVALSALLGGLISLLNFALFARRAFRFGGAIARKAKK 60

Query: 268 LMKG-AVGQP-RLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFF 314
            ++   +G+  RL + + L ++           + +  L L+ + +G  
Sbjct: 61  AVRSFYLGEAIRLALTIALFVLA----------FKYPKLSLLALFLGLL 99


Length = 99

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PF03899100 ATP_synt_I: ATP synthase I chain; InterPro: IPR005 98.12
PF1296685 AtpR: N-ATPase, AtpR subunit 94.21
PRK05760124 F0F1 ATP synthase subunit I; Validated 92.49
PRK06099126 F0F1 ATP synthase subunit I; Validated 89.52
PRK08049124 F0F1 ATP synthase subunit I; Validated 86.82
COG3312128 AtpI F0F1-type ATP synthase, subunit I [Energy pro 81.64
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
Probab=98.12  E-value=1.1e-05  Score=63.39  Aligned_cols=93  Identities=20%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc----ccccc--CCCCCCchHHHHHHHH
Q 019487          213 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA----KGLMK--GAVGQPRLLVPVVLVM  286 (340)
Q Consensus       213 LLl~Tl~ig~vg~~~~~l~ys~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~----~g~~~--galgqpRLLVPV~Lvv  286 (340)
                      +...++.+++++.+.+++.++.+.++|+++|++.+++...++.+.++++.+..    ++..+  ...---|+++-+++++
T Consensus         2 i~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~~   81 (100)
T PF03899_consen    2 IVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLFI   81 (100)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999999999999999999999996664211    11111  0012357888888888


Q ss_pred             HHHHhhccccCCccccchhHHHHHHHHH
Q 019487          287 IYNRWNEITVPEYGFLHLELIPMLVGFF  314 (340)
Q Consensus       287 ~a~rwn~i~~p~~g~~~LeLlP~llGFL  314 (340)
                      +..++..         +++.++.++||+
T Consensus        82 ~~~~~~~---------~~~~~~~~~Gl~  100 (100)
T PF03899_consen   82 LAFKFPP---------ELNPIALLIGLL  100 (100)
T ss_pred             HHHHHHc---------ccHHHHHHHHHC
Confidence            8888832         488999999985



ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].

>PF12966 AtpR: N-ATPase, AtpR subunit Back     alignment and domain information
>PRK05760 F0F1 ATP synthase subunit I; Validated Back     alignment and domain information
>PRK06099 F0F1 ATP synthase subunit I; Validated Back     alignment and domain information
>PRK08049 F0F1 ATP synthase subunit I; Validated Back     alignment and domain information
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 43/185 (23%)

Query: 74  PLTSDEFIWNNDFMPRMKRLIEDTDE---SSAEKFPVQEEPSGFLSLNRVMSLDSKELTA 130
            +  D F+ N D      + ++D  +   S  E   +           R+       L +
Sbjct: 23  SVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLS 73

Query: 131 DSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRK 190
             +  +Q+ VE  ++ +         K+ ++P + E     +     T     M+ E R 
Sbjct: 74  KQEEMVQKFVEEVLRINY--------KFLMSPIKTE----QRQPSMMT----RMYIEQRD 117

Query: 191 P-RGDPEVLAAQS---KEQYFKLKSKLQ------FLTL-GIGGVG---LV-SAYISYSPE 235
               D +V A  +    + Y KL+  L        + + G+ G G   +     +SY  +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 236 IAASF 240
               F
Sbjct: 178 CKMDF 182


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00