Citrus Sinensis ID: 019524

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MSSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
ccccccccccccHHHHHHHcccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHccccccccEEccccccHHHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHcc
ccccccccccccccccccccEEcccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHcHHcccEEEccccccHHHHHHHccHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHccccEEEEcccccHHcccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccEEEEEccccEEEEEEcccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccEEEcEccccHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcc
mssssspsvttdaetlkrnrilssklyfdipifklpliyspdydisflgieklhpfdsskwgricqflssegfldkncivepleaskeDLLVVHSESYLKslqsspnvsiiievppvalfpnclvqrkvLYPFRKQVGGTILAAKLAKERGwainvgggfhhcsadegggfcayADISLCIHYAFVQLNISRVMIIdldahqgnghekdfssdsRVYILdmfnpgiyprdyeARRFIDQKVEVVSGTTTNEYLKKLDEALEvaghtfdpelVIYNagtdilegdplgmlkispdgiaarDEKTFRFArsrnipivmltsgpitsEKVLALWSIRFHVFV
mssssspsvttdaetlkrnrilssklyFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNghekdfssdsrVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTfrfarsrnipivmltsgpitsekvLALWSIRFHVFV
MssssspsVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
******************NRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN*****FSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVF*
**********************************LPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV*IIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
**************TLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
**************TLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q944K3387 Histone deacetylase 2 OS= yes no 0.967 0.847 0.748 1e-146
Q9GKU5347 Histone deacetylase 11 OS N/A no 0.879 0.858 0.575 2e-99
Q96DB2347 Histone deacetylase 11 OS yes no 0.879 0.858 0.571 5e-99
Q91WA3347 Histone deacetylase 11 OS yes no 0.879 0.858 0.568 2e-97
P28606300 Uncharacterized protein S yes no 0.799 0.903 0.280 8e-23
B1H369369 Histone deacetylase 8 OS= yes no 0.764 0.701 0.275 2e-22
Q6GPA7325 Histone deacetylase 8 OS= N/A no 0.728 0.76 0.268 7e-21
Q20296 955 Histone deacetylase 6 OS= no no 0.820 0.291 0.272 6e-19
P56517 480 Histone deacetylase 1 OS= no no 0.864 0.610 0.275 7e-19
Q8VH37377 Histone deacetylase 8 OS= no no 0.731 0.657 0.265 1e-18
>sp|Q944K3|HDA2_ARATH Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2 Back     alignment and function desciption
 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/330 (74%), Positives = 284/330 (86%), Gaps = 2/330 (0%)

Query: 2   SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
           S  SS S+ T  E L+R RIL+SKLYFD+P+ K+ +IYS  YDISF+GIEKLHPFDSSKW
Sbjct: 41  SEISSFSMATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKW 100

Query: 62  GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
           GR+C+FL S+GFL++  IVEPLEASK DLLVVHSE+YL SL+SS  V+ I EV PVA FP
Sbjct: 101 GRVCKFLVSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFP 160

Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
           N LVQ+KVLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCI
Sbjct: 161 NFLVQQKVLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCI 220

Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKV 241
           H+AF++L ISRVMIIDLDAHQGNGHE D   D+RVYILDM+NP IYP DY ARRFIDQKV
Sbjct: 221 HFAFLRLRISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKV 280

Query: 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE 301
           EV+SGTTT+EYL+KLDEALEVA   F PELVIYNAGTDIL+GDPLG+LKISPDGI +RDE
Sbjct: 281 EVMSGTTTDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDE 340

Query: 302 KTFRFARSRNIPIVMLTSGPI--TSEKVLA 329
           K FRFAR +NIP+VMLTSG    +S +V+A
Sbjct: 341 KVFRFAREKNIPLVMLTSGGYMKSSARVIA 370
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|Q9GKU5|HDA11_MACFA Histone deacetylase 11 OS=Macaca fascicularis GN=HDAC11 PE=2 SV=2 Back     alignment and function description
>sp|Q96DB2|HDA11_HUMAN Histone deacetylase 11 OS=Homo sapiens GN=HDAC11 PE=1 SV=1 Back     alignment and function description
>sp|Q91WA3|HDA11_MOUSE Histone deacetylase 11 OS=Mus musculus GN=Hdac11 PE=2 SV=1 Back     alignment and function description
>sp|P28606|Y1628_SYNP2 Uncharacterized protein SYNPCC7002_A1628 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1628 PE=3 SV=2 Back     alignment and function description
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1 Back     alignment and function description
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1 Back     alignment and function description
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2 Back     alignment and function description
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
255550810342 histone deacetylase, putative [Ricinus c 0.943 0.935 0.8 1e-152
225429480359 PREDICTED: histone deacetylase 2 [Vitis 0.932 0.880 0.805 1e-152
357437493350 Histone deacetylase [Medicago truncatula 0.935 0.905 0.823 1e-151
356564065348 PREDICTED: histone deacetylase 2-like [G 0.932 0.908 0.806 1e-151
388493714348 unknown [Lotus japonicus] 0.961 0.936 0.806 1e-151
449447110351 PREDICTED: histone deacetylase 2-like [C 0.967 0.934 0.758 1e-146
30690103387 histone deacetylase 2 [Arabidopsis thali 0.967 0.847 0.748 1e-145
297812823387 hypothetical protein ARALYDRAFT_489451 [ 0.967 0.847 0.745 1e-144
21105771340 HDA2 [Arabidopsis thaliana] 0.946 0.944 0.752 1e-143
326522206352 predicted protein [Hordeum vulgare subsp 0.970 0.934 0.705 1e-138
>gi|255550810|ref|XP_002516453.1| histone deacetylase, putative [Ricinus communis] gi|223544273|gb|EEF45794.1| histone deacetylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/320 (80%), Positives = 287/320 (89%)

Query: 2   SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61
           S   S S T D+ TL+RNRI+SSKLYFDIP+ K+P+IYSP YDISFLGIEKLHPFDSSKW
Sbjct: 16  SRQMSSSTTADSLTLRRNRIISSKLYFDIPLSKVPIIYSPAYDISFLGIEKLHPFDSSKW 75

Query: 62  GRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP 121
           GR+C+FL +EG LDKN IVEPLEASK+DLLVVH ESYL SL+SS NV+ IIEVPPV+LFP
Sbjct: 76  GRVCRFLVTEGVLDKNSIVEPLEASKDDLLVVHLESYLSSLRSSANVATIIEVPPVSLFP 135

Query: 122 NCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCI 181
           NCLVQ+KVL+PFRKQVGGTILAAKLAKERGWAINVGGGFHHCS+ +GGGFCAYADISLCI
Sbjct: 136 NCLVQQKVLFPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSSGKGGGFCAYADISLCI 195

Query: 182 HYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKV 241
           H+AFV+L ISRVMIIDLDAHQGNGHE DF  D+R+YILDM+NPGIYP DYEAR +IDQKV
Sbjct: 196 HFAFVRLRISRVMIIDLDAHQGNGHEMDFYDDNRIYILDMYNPGIYPLDYEARNYIDQKV 255

Query: 242 EVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDE 301
           E+ SGT T+EYL++LDEALEVA   FDPELV+YNAGTDIL+GDPLG LKISPDGI ARDE
Sbjct: 256 EIASGTRTDEYLRELDEALEVADQKFDPELVVYNAGTDILDGDPLGRLKISPDGITARDE 315

Query: 302 KTFRFARSRNIPIVMLTSGP 321
           K FRFAR +N P+VMLTSGP
Sbjct: 316 KVFRFAREKNAPLVMLTSGP 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225429480|ref|XP_002277742.1| PREDICTED: histone deacetylase 2 [Vitis vinifera] gi|296081627|emb|CBI20632.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357437493|ref|XP_003589022.1| Histone deacetylase [Medicago truncatula] gi|355478070|gb|AES59273.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356564065|ref|XP_003550277.1| PREDICTED: histone deacetylase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|388493714|gb|AFK34923.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449447110|ref|XP_004141312.1| PREDICTED: histone deacetylase 2-like [Cucumis sativus] gi|449486647|ref|XP_004157356.1| PREDICTED: histone deacetylase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690103|ref|NP_568480.2| histone deacetylase 2 [Arabidopsis thaliana] gi|145558941|sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gi|332006134|gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297812823|ref|XP_002874295.1| hypothetical protein ARALYDRAFT_489451 [Arabidopsis lyrata subsp. lyrata] gi|297320132|gb|EFH50554.1| hypothetical protein ARALYDRAFT_489451 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21105771|gb|AAM34784.1|AF510671_1 HDA2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|326522206|dbj|BAK04231.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2180657387 HDA2 "AT5G26040" [Arabidopsis 0.946 0.829 0.752 2.4e-131
UNIPROTKB|F1NYW6357 HDAC11 "Uncharacterized protei 0.876 0.831 0.573 5.1e-90
UNIPROTKB|Q9GKU5347 HDAC11 "Histone deacetylase 11 0.879 0.858 0.575 5.1e-90
UNIPROTKB|Q96DB2347 HDAC11 "Histone deacetylase 11 0.879 0.858 0.571 1.7e-89
ZFIN|ZDB-GENE-040704-7366 hdac11 "histone deacetylase 11 0.876 0.811 0.577 2.2e-89
UNIPROTKB|F1MWX4386 HDAC11 "Uncharacterized protei 0.876 0.769 0.570 2.8e-89
MGI|MGI:2385252347 Hdac11 "histone deacetylase 11 0.879 0.858 0.568 2e-88
RGD|1311706347 Hdac11 "histone deacetylase 11 0.879 0.858 0.568 2e-88
UNIPROTKB|F1PSI9319 HDAC11 "Uncharacterized protei 0.843 0.896 0.564 1.9e-83
UNIPROTKB|E7ETT9319 HDAC11 "Histone deacetylase 11 0.805 0.855 0.587 6.4e-83
TAIR|locus:2180657 HDA2 "AT5G26040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 243/323 (75%), Positives = 280/323 (86%)

Query:     9 VTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFL 68
             + T  E L+R RIL+SKLYFD+P+ K+ +IYS  YDISF+GIEKLHPFDSSKWGR+C+FL
Sbjct:    48 MATHPEALRRERILNSKLYFDVPLSKVSIIYSSSYDISFMGIEKLHPFDSSKWGRVCKFL 107

Query:    69 SSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPNCLVQRK 128
              S+GFL++  IVEPLEASK DLLVVHSE+YL SL+SS  V+ I EV PVA FPN LVQ+K
Sbjct:   108 VSDGFLEEKAIVEPLEASKIDLLVVHSENYLNSLKSSATVARITEVAPVAFFPNFLVQQK 167

Query:   129 VLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188
             VLYPFRKQVGGTILAAKLA ERGWAIN+GGGFHHC+A+ GGGFCA+ADISLCIH+AF++L
Sbjct:   168 VLYPFRKQVGGTILAAKLATERGWAINIGGGFHHCTAERGGGFCAFADISLCIHFAFLRL 227

Query:   189 NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVSGTT 248
              ISRVMIIDLDAHQGNGHE D   D+RVYILDM+NP IYP DY ARRFIDQKVEV+SGTT
Sbjct:   228 RISRVMIIDLDAHQGNGHETDLGDDNRVYILDMYNPEIYPFDYRARRFIDQKVEVMSGTT 287

Query:   249 TNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFAR 308
             T+EYL+KLDEALEVA   F PELVIYNAGTDIL+GDPLG+LKISPDGI +RDEK FRFAR
Sbjct:   288 TDEYLRKLDEALEVASRNFQPELVIYNAGTDILDGDPLGLLKISPDGITSRDEKVFRFAR 347

Query:   309 SRNIPIVMLTSGPI--TSEKVLA 329
              +NIP+VMLTSG    +S +V+A
Sbjct:   348 EKNIPLVMLTSGGYMKSSARVIA 370
GO:0004407 "histone deacetylase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NYW6 HDAC11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKU5 HDAC11 "Histone deacetylase 11" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q96DB2 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040704-7 hdac11 "histone deacetylase 11" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWX4 HDAC11 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2385252 Hdac11 "histone deacetylase 11" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311706 Hdac11 "histone deacetylase 11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSI9 HDAC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7ETT9 HDAC11 "Histone deacetylase 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9GKU5HDA11_MACFA3, ., 5, ., 1, ., 9, 80.57520.87900.8587N/Ano
Q91WA3HDA11_MOUSE3, ., 5, ., 1, ., 9, 80.56850.87900.8587yesno
Q944K3HDA2_ARATH3, ., 5, ., 1, ., 9, 80.74840.96750.8475yesno
Q96DB2HDA11_HUMAN3, ., 5, ., 1, ., 9, 80.57190.87900.8587yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032175001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (351 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 1e-123
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 5e-71
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 6e-69
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 2e-48
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-33
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 5e-30
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 9e-29
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 3e-26
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-21
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 5e-19
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 8e-19
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-18
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-18
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1e-18
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 4e-18
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 8e-18
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-17
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 4e-17
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-16
cd11683337 cd11683, HDAC10, Histone deacetylase 10 3e-15
cd10009379 cd10009, HDAC9, Histone deacetylase 9 5e-14
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 7e-14
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 8e-14
PTZ00063 436 PTZ00063, PTZ00063, histone deacetylase; Provision 4e-13
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 6e-13
cd10007420 cd10007, HDAC5, Histone deacetylase 5 1e-08
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 2e-08
cd10006409 cd10006, HDAC4, Histone deacetylase 4 4e-08
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 8e-08
cd10008378 cd10008, HDAC7, Histone deacetylase 7 9e-08
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information 
 Score =  354 bits (911), Expect = e-123
 Identities = 109/267 (40%), Positives = 144/267 (53%), Gaps = 9/267 (3%)

Query: 54  HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE 113
           H F   K+G + + L  EG +    IVEP  A++EDLL VH   YL+SL+S     +  E
Sbjct: 1   HRFPMRKYGLLREALLEEGLVLPEDIVEPEPATREDLLRVHDPEYLESLKSG---ELSRE 57

Query: 114 VPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCA 173
                 FP      +++   R  VGGTILAA+LA E G AIN+ GG HH   D G GFC 
Sbjct: 58  EIRRIGFPWSP---ELVERTRLAVGGTILAARLALEHGLAINLAGGTHHAFPDRGEGFCV 114

Query: 174 YADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEA 233
           + DI++       +  + RV+I+DLD HQGNG    F+ D  V+   M     YP     
Sbjct: 115 FNDIAIAARVLLAEGLVRRVLIVDLDVHQGNGTAAIFADDPSVFTFSMHGEKNYPFR--- 171

Query: 234 RRFIDQKVEVVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISP 293
           +   D  V +  GT  +EYL  L+EAL      F P+LV YNAG D+L GD LG L +S 
Sbjct: 172 KEPSDLDVPLPDGTGDDEYLAALEEALPRLLAEFRPDLVFYNAGVDVLAGDRLGRLSLSL 231

Query: 294 DGIAARDEKTFRFARSRNIPIVMLTSG 320
           +G+  RD    RFAR+R IP+ M+  G
Sbjct: 232 EGLRERDRLVLRFARARGIPVAMVLGG 258

Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients. Length = 275
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
PTZ00063 436 histone deacetylase; Provisional 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1342 425 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
cd01835193 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG 90.21
cd01828169 sialate_O-acetylesterase_like2 sialate_O-acetylest 87.36
cd01822177 Lysophospholipase_L1_like Lysophospholipase L1-lik 87.17
cd01832185 SGNH_hydrolase_like_1 Members of the SGNH-hydrolas 86.44
cd04501183 SGNH_hydrolase_like_4 Members of the SGNH-hydrolas 86.27
PF13472179 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase fami 83.07
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 82.34
cd01825189 SGNH_hydrolase_peri1 SGNH_peri1; putative periplas 82.08
cd01833157 XynB_like SGNH_hydrolase subfamily, similar to Rum 80.48
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-82  Score=610.80  Aligned_cols=296  Identities=28%  Similarity=0.404  Sum_probs=269.2

Q ss_pred             CcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCccccc
Q 019524           33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII  112 (339)
Q Consensus        33 ~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~  112 (339)
                      |++.++||+.+..|..  +..|||+|+|++.+.++|++.++...+++++|++++.++|++||+++||++|++.+....  
T Consensus         2 ~~~~~~~~~~~~~~~~--~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~--   77 (340)
T COG0123           2 MKTALIYHPEFLEHEP--PPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG--   77 (340)
T ss_pred             CcceEeeCHHHhcCCC--CCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence            6788999999998864  479999999999999999999988888999999999999999999999999999876411  


Q ss_pred             cCCCccccCCccccccchHHHHHHhcHHHHHHHHhhhh--cceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHcCC
Q 019524          113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI  190 (339)
Q Consensus       113 e~~~~~~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~~--~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~~  190 (339)
                         ...++.||++++++++++++++|++++|++.+++.  ..++++.||||||++++++|||+|||+||||++|+++ +.
T Consensus        78 ---~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~  153 (340)
T COG0123          78 ---YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GV  153 (340)
T ss_pred             ---cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CC
Confidence               24578899999999999999999999999999875  4555555556999999999999999999999999998 88


Q ss_pred             CeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCC--CCCCCCccc------CCccccccccCCCCChHHHHHHHHHHHHH
Q 019524          191 SRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEA------RRFIDQKVEVVSGTTTNEYLKKLDEALEV  262 (339)
Q Consensus       191 ~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~--~~yP~tg~~------~~~~~~NvPL~~g~~d~~yl~a~~~~l~p  262 (339)
                      +||+|||||||||||||+|||+|++|+|+|+|+.  ++|||||..      ++++++|||||+|++|++|+.+|+.++.|
T Consensus       154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~y~~a~~~~v~~  233 (340)
T COG0123         154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDSYLEALEEIVLP  233 (340)
T ss_pred             CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999995  799999752      24689999999999999999999999999


Q ss_pred             HHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHHhh
Q 019524          263 AGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFH  336 (339)
Q Consensus       263 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~~~  336 (339)
                      ++++|+||+||||||||+|.+||||.|+||+++|.++++++++++..+++|+++||||||+...+...|+..+.
T Consensus       234 ~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~  307 (340)
T COG0123         234 LLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLA  307 (340)
T ss_pred             HHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998899999999999999755555555443

>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases Back     alignment and domain information
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 3e-20
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 9e-20
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 1e-19
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 1e-19
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 1e-19
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 1e-19
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 1e-19
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-19
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 2e-19
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 2e-19
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-19
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 1e-18
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 1e-16
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 2e-16
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 6e-16
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 3e-14
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 7e-13
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 7e-13
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 6e-08
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 5e-07
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 6e-07
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 6e-07
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 6e-07
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 29/317 (9%)
Query: 30  IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
           +P++    IYSP+Y      + K+      +   +   + +     +  IV+P  AS E+
Sbjct: 15  VPVY----IYSPEYVSMCDSLAKI----PKRASMVHSLIEAYALHKQMRIVKPKVASMEE 66
Query: 90  LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLA 147
           +   H+++YL+ LQ  S        +     L  NC     + + +   +GG  + A   
Sbjct: 67  MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYNCPATEGI-FDYAAAIGGATITAAQC 125
Query: 148 KERGW---AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
              G    AIN  GG+HH   DE  GFC   D  L I    ++    R++ +DLD H G+
Sbjct: 126 LIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGI--LRLRRKFERILYVDLDLHHGD 183
Query: 205 GHEKDFSSDSRVYILDM--FNPGIYPRDYEAR-------RFIDQKVEVVSGTTTNEYLKK 255
           G E  FS  S+V  + +  F+PG +P   +         R+    V +  G    +Y + 
Sbjct: 184 GVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQI 243
Query: 256 LDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIV 315
            +  L+     F+P+ V+   G D + GDP+    ++P GI     K  ++     +  +
Sbjct: 244 CESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATL 299
Query: 316 MLTSGPITSEKVLALWS 332
           +L  G          W+
Sbjct: 300 ILGGGGYNLANTARCWT 316
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 2e-44
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 5e-43
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 4e-40
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 9e-40
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 1e-26
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 2e-25
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 2e-25
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 6e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  155 bits (395), Expect = 2e-44
 Identities = 74/294 (25%), Positives = 120/294 (40%), Gaps = 23/294 (7%)

Query: 37  LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
            IYSP+Y    + +         +   +   + +     +  IV+P  AS E++   H++
Sbjct: 18  YIYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTD 73

Query: 97  SYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKERGW 152
           +YL+ LQ  S        +     L   C     +        G TI AA+  +      
Sbjct: 74  AYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKV 133

Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
           AIN  GG+HH   DE  GFC   D  L I     +    R++ +DLD H G+G E  FS 
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSF 191

Query: 213 DSRVYILD--MFNPGIYP-----RDYEARRFIDQKVEV--VSGTTTNEYLKKLDEALEVA 263
            S+V  +    F+PG +P      D    +     V V    G    +Y +  +  L+  
Sbjct: 192 TSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEV 251

Query: 264 GHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVML 317
              F+P+ V+   G D + GDP+    ++P GI     K  ++     +  ++L
Sbjct: 252 YQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIG----KCLKYILQWQLATLIL 301
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
1ivn_A190 Thioesterase I; hydrolase, protease; 1.90A {Escher 87.5
3hp4_A185 GDSL-esterase; psychrotrophic, monoethylphosphonat 86.56
3mil_A240 Isoamyl acetate-hydrolyzing esterase; SGNH-hydrola 83.7
3p94_A204 GDSL-like lipase; serine hydrolase, catalytic tria 81.48
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 81.23
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
Probab=100.00  E-value=5e-87  Score=651.95  Aligned_cols=296  Identities=21%  Similarity=0.310  Sum_probs=271.8

Q ss_pred             CcceEEECcccCcccCCCCCC----------------CCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCCh
Q 019524           33 FKLPLIYSPDYDISFLGIEKL----------------HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE   96 (339)
Q Consensus        33 ~~~~ivy~~~~~~h~~~~~~~----------------HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~   96 (339)
                      |+++++|||+|..|.++  .+                |||+|+|++.|+++|++.|+++.+++++|++++.++|++||++
T Consensus         1 m~t~~~y~~~~~~h~~~--~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~   78 (369)
T 1zz1_A            1 MAIGYVWNTLYGWVDTG--TGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSA   78 (369)
T ss_dssp             -CEEEECCGGGGGCCCC--SSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCH
T ss_pred             CeEEEEEchHHcccCCC--CcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccH
Confidence            68999999999999765  44                9999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcCCC-ccccccCCCccccC-CccccccchHHHHHHhcHHHHHHHHhhh----hcceeeccCCCCCCCCCCCCc
Q 019524           97 SYLKSLQSSPN-VSIIIEVPPVALFP-NCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGG  170 (339)
Q Consensus        97 ~Yv~~l~~~~~-~~~~~e~~~~~~~~-~~~~~~~~~~~a~~aagg~l~aa~~~~~----~~~a~~~~~G~HHA~~~~a~G  170 (339)
                      +||++|++.+. ..      ...++. ||++++++++++++++||++.|++.+++    ++||++|||| |||++++++|
T Consensus        79 ~Yv~~l~~~~~~~~------~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~G  151 (369)
T 1zz1_A           79 AHLENMKRVSNLPT------GGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMG  151 (369)
T ss_dssp             HHHHHHHHHHHSTT------CEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBT
T ss_pred             HHHHHHHHhCcccc------ceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCC
Confidence            99999987653 11      123566 9999999999999999999999999987    4689999998 9999999999


Q ss_pred             ccccchHHHHHHHHHHHcCCCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCCCCC-CCccc-------CCccccccc
Q 019524          171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYP-RDYEA-------RRFIDQKVE  242 (339)
Q Consensus       171 FC~fNnvAIAa~~l~~~~~~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP-~tg~~-------~~~~~~NvP  242 (339)
                      ||+|||+||||++|++++|++||+|||||||||||||+|||+||+|+|+|+|+.++|| +||..       ++++++|||
T Consensus       152 FC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvP  231 (369)
T 1zz1_A          152 FCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVP  231 (369)
T ss_dssp             TBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEE
T ss_pred             chHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeee
Confidence            9999999999999999999999999999999999999999999999999999999999 88753       246899999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhh-CCCCEEEEeCCC
Q 019524          243 VVSGTTTNEYLKKLDEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARS-RNIPIVMLTSGP  321 (339)
Q Consensus       243 L~~g~~d~~yl~a~~~~l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~-~~~p~v~vleGG  321 (339)
                      ||+|++|++|+.+|++++.|++++|+||+||||||||+|++||||.|+||+++|.++++.|+++|.+ +++|++++||||
T Consensus       232 L~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGG  311 (369)
T 1zz1_A          232 LPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGG  311 (369)
T ss_dssp             ECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999988 799999999999


Q ss_pred             CChhHHHHHHHHHhhh
Q 019524          322 ITSEKVLALWSIRFHV  337 (339)
Q Consensus       322 Y~~~~~~a~~~~~~~~  337 (339)
                      |+...+..+|+..+..
T Consensus       312 Y~~~~l~~~~~~~~~~  327 (369)
T 1zz1_A          312 YSPHYLPFCGLAVIEE  327 (369)
T ss_dssp             CCTTTHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHH
Confidence            9986566666655443
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A* Back     alignment and structure
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 Back     alignment and structure
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis} Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 4e-35
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 2e-34
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 3e-30
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 4e-35
 Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 27/304 (8%)

Query: 30  IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
           +P++    IYSP+Y    + +         +   +   + +     +  IV+P  AS E+
Sbjct: 2   VPVY----IYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEE 53

Query: 90  LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK-- 145
           +   H+++YL+ LQ  S        +     L  +C     +        G TI AA+  
Sbjct: 54  MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCL 113

Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
           +      AIN  GG+HH   DE  GFC   D  L I     +    R++ +DLD H G+G
Sbjct: 114 IDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDG 171

Query: 206 HEKDFSSDSRV--YILDMFNPGIYPRDYEA-------RRFIDQKVEVVSGTTTNEYLKKL 256
            E  FS  S+V    L  F+PG +P   +         R+    V +  G    +Y +  
Sbjct: 172 VEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQIC 231

Query: 257 DEALEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVM 316
           +  L+     F+P+ V+   G D + GDP+    ++P GI        ++     +  ++
Sbjct: 232 ESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCL----KYILQWQLATLI 287

Query: 317 LTSG 320
           L  G
Sbjct: 288 LGGG 291
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.7e-81  Score=608.63  Aligned_cols=299  Identities=22%  Similarity=0.322  Sum_probs=263.4

Q ss_pred             CcceEEECcccCcccCCCCCCCCCCChHHHHHHHHHHHCCCCCCCeeeCCCCCCHHHHhccCChhHHHHhhcCCCccccc
Q 019524           33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII  112 (339)
Q Consensus        33 ~~~~ivy~~~~~~h~~~~~~~HPe~p~R~~~i~~~L~~~gl~~~~~~~~p~~a~~e~l~~vHs~~Yv~~l~~~~~~~~~~  112 (339)
                      .|+++|||++|..|.++  ++|||+|+|+..++++|++.|+++.+++++|++|+.++|++|||++||++|++.+......
T Consensus         1 ~k~~li~~~d~~~~~~g--~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~   78 (372)
T d1c3pa_           1 KKVKLIGTLDYGKYRYP--KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP   78 (372)
T ss_dssp             CCEEEEECGGGGGSCCC--TTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred             CeEEEEeChhhcCCCCC--CccCcCHHHHHHHHHHHHHcCCCCCCcEEcCCCCCHHHHHHhCCHHHHHHHHHhcccccCc
Confidence            47899999999988654  7899999999999999999999999999999999999999999999999998754322111


Q ss_pred             cCCCcc---ccCCccccccchHHHHHHhcHHHHHHHHhhhhcceeeccCCCCCCCCCCCCcccccchHHHHHHHHHHHcC
Q 019524          113 EVPPVA---LFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN  189 (339)
Q Consensus       113 e~~~~~---~~~~~~~~~~~~~~a~~aagg~l~aa~~~~~~~~a~~~~~G~HHA~~~~a~GFC~fNnvAIAa~~l~~~~~  189 (339)
                      +.....   ...++++++++++++++++|+++.|++.+.++..++++|||+|||.+++++|||+|||+||||++++++ +
T Consensus        79 ~~~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~-~  157 (372)
T d1c3pa_          79 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-G  157 (372)
T ss_dssp             TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-T
T ss_pred             ccccccccCCCcCCCCCHHHHHHHHHhhhhHHHHhhhhccccceeeccccccccccccceeeeecchHHHHHHHHHHh-c
Confidence            100001   124678889999999999999999999998777788888888999999999999999999999998775 5


Q ss_pred             CCeEEEEeccCcCCcchhhhhcCCCcEEEEEeeCCCCCCC---Ccc-------cCCccccccccCCCCChHHHHHHHHHH
Q 019524          190 ISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPR---DYE-------ARRFIDQKVEVVSGTTTNEYLKKLDEA  259 (339)
Q Consensus       190 ~~RV~IiD~DvHHGnGTq~if~~d~~Vl~iSiH~~~~yP~---tg~-------~~~~~~~NvPL~~g~~d~~yl~a~~~~  259 (339)
                      ++||+|||||||||||||+|||+||+|+|+|+|+.+.||+   ||.       .+.++++|||||+|++|++|+.+|+++
T Consensus       158 ~~RV~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~  237 (372)
T d1c3pa_         158 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS  237 (372)
T ss_dssp             CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred             cCceEEEeccccCCCceeEEEeecCCccccccccCCCCCCCCCCCCccccCCCccccceecccCCcccccHHHHHHHHHh
Confidence            8999999999999999999999999999999999887764   443       234689999999999999999999999


Q ss_pred             HHHHHhhcCCCEEEEEcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHhhCCCCEEEEeCCCCChhHHHHHHHHHhhhc
Q 019524          260 LEVAGHTFDPELVIYNAGTDILEGDPLGMLKISPDGIAARDEKTFRFARSRNIPIVMLTSGPITSEKVLALWSIRFHVF  338 (339)
Q Consensus       260 l~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~a~~~~~p~v~vleGGY~~~~~~a~~~~~~~~~  338 (339)
                      |.|++++|+||+||||||||+|++||+|+|+||+++|.++++.|++++    +|++++|||||+...+..+|+..+.++
T Consensus       238 l~p~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~----~~~~~vleGGY~~~~~a~~~~~~~~~l  312 (372)
T d1c3pa_         238 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVF----GEGVYLGGGGYHPYALARAWTLIWCEL  312 (372)
T ss_dssp             HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHH----CSCEEECCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCcccCCcCcccCCcCCHHHHHHHHHHHHHhC----CCeEEEEcCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998765    899999999999987888887766543
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure